# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	2.30e-12	b.36.1.1	60400
2he4A	90	3.95e-12		
2ozfA	92	4.17e-12		
1tp5A	119	4.89e-12	b.36.1.1	119305
2he2A	102	5.07e-12		
2v90A	96	6.28e-12		
2qg1A	92	1.29e-11		
2fneA	117	1.35e-11	b.36.1.1	133813
2ocsA	88	1.53e-11		
2iwnA	97	1.65e-11		
2awxA	105	2.01e-11		
2fe5A	94	2.09e-11	b.36.1.1	133323
2opgA	98	2.10e-11		
2f5yA	91	3.22e-11	b.36.1.1	133015
2i1nA	102	3.65e-11		
1qauA	112	3.99e-11	b.36.1.1	24779
1n7eA	97	4.00e-11	b.36.1.1	91691
2pa1A	87	4.62e-11		
2jilA	97	5.72e-11		
2pktA	91	6.04e-11		
1nf3C	128	6.06e-11	b.36.1.1	85596
2jikA	101	6.30e-11		
2q3gA	89	6.82e-11		
2uzcA	88	6.89e-11		
1q3oA	109	8.25e-11	b.36.1.1	95700
1qavA	90	1.06e-10	b.36.1.1	24777
2qkvA	96	1.19e-10		
2egoA	96	1.64e-10		
2iwoA	120	1.77e-10		
1wf7A	103	1.77e-10	b.36.1.1	114577
1kwaA	88	1.78e-10	b.36.1.1	24772
1fc6A	388	1.92e-10	b.36.1.3,c.14.1.2	64738,64739
2fcfA	103	1.97e-10	b.36.1.1	133267
2h2bA	107	2.29e-10		
2i04A	85	2.39e-10		
2vphA	100	2.58e-10		
2q9vA	90	2.75e-10		
1ihjA	98	2.77e-10	b.36.1.1	62382
2f0aA	98	3.49e-10	b.36.1.1	132661
1r6jA	82	3.61e-10	b.36.1.1	97151
2eaqA	90	3.62e-10		
2reyA	100	5.23e-10		
1x45A	98	7.66e-10	b.36.1.1	121679
2gzvA	114	1.10e-09		
3bpuA	88	1.16e-09		
2h3lA	103	1.78e-09	b.36.1.1	136046
1mfgA	95	2.89e-09	b.36.1.1	79043
2rczA	81	4.01e-09		
2p3wA	112	9.81e-06		
1y8tA	324	1.09e-05	b.36.1.4,b.47.1.1	122763,122764
1te0A	318	3.00e-05	b.36.1.4,b.47.1.1	112400,112401
1lcyA	325	4.41e-05	b.36.1.4,b.47.1.1	73834,73835
1j7xA	302	0.001201	c.14.1.2	66425
1k32A	1045	0.003995	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	2.017		
2g8oA	264	7.096	d.117.1.1	134779
2g8mA	264	7.831		
2adzA	178	8.683	b.55.1.1	126599
1bkpA	278	8.800	d.117.1.1	41029
1w30A	201	9.098	c.61.1.1	114118
1ypvA	313	13.35		
1zn8A	180	13.91	c.61.1.1	125376
1u9yA	284	15.52	c.61.1.2,c.61.1.2	119655,119656
1l1qA	186	18.93	c.61.1.1	77653
1f28A	297	20.81	d.117.1.1	59608
1qqqA	264	23.51	d.117.1.1	40931
2j3tD	219	24.03		
2igbA	179	26.23		
1h5rA	293	28.03	c.68.1.6	65623
2yzkA	178	29.30		
1dkuA	317	30.08	c.61.1.2,c.61.1.2	34118,34119
1v9sA	208	30.42	c.61.1.1	119894
2jbhA	225	30.80		
2zbvA	263	32.07		
2q6kA	283	35.39		
2p1zA	180	37.16		
2cw5A	255	37.28		
1p2fA	220	37.83	a.4.6.1,c.23.1.1	87720,87721
1a3c	181	39.71		
1mi8A	158	40.23	b.86.1.2	91279
1g2qA	187	40.29	c.61.1.1	65117
2hcrA	326	41.28		
1fi2A	201	43.42	b.82.1.2	59845
1cjbA	231	43.64	c.61.1.1	34079
1vctA	205	44.60	a.7.12.1,d.286.1.1	119986,119987
2f4nA	273	44.95		
1ev5A	264	46.03	d.117.1.1	40935
2og9A	393	47.69		
2pezA	179	55.27		
1s98A	107	55.88	b.124.1.1	105377
1zlqA	502	57.75	c.94.1.1	125253
1y0bA	197	60.40	c.61.1.1	122476
1c9oA	66	60.88	b.40.4.5	25325
1dmgA	225	64.84	c.22.1.1	31036
1lh0A	213	65.62	c.61.1.1	73896
1vchA	175	67.26	c.61.1.1	119980
2nwhA	317	67.68		
3bhxA	709	69.13		
2et1A	201	70.19	b.82.1.2	132351
2g5cA	281	70.58	a.100.1.12,c.2.1.6	134646,134647
1lvwA	295	70.60	c.68.1.6	84723
1h9oA	112	71.09	d.93.1.1	60837
2rdyA	803	71.26		
1rqpA	299	71.85	b.141.1.1,c.132.1.1	97754,97755
2gsmB	262	73.14	b.6.1.2,f.17.2.1	135590,135591
2v40A	459	75.27		
1b5eA	246	76.07	d.117.1.1	41056
2aeeA	211	77.74	c.61.1.1	126620
1l5jA	865	79.41	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1wd5A	208	81.20	c.61.1.1	114524