# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	1.17e-12	b.36.1.1	60400
2he4A	90	2.16e-12		
2ozfA	92	2.28e-12		
1tp5A	119	2.66e-12	b.36.1.1	119305
2he2A	102	2.83e-12		
2v90A	96	3.10e-12		
2qg1A	92	5.25e-12		
2ocsA	88	6.06e-12		
2fneA	117	6.47e-12	b.36.1.1	133813
2iwnA	97	7.94e-12		
2fe5A	94	9.00e-12	b.36.1.1	133323
2awxA	105	9.88e-12		
2opgA	98	9.93e-12		
2f5yA	91	1.24e-11	b.36.1.1	133015
2i1nA	102	1.63e-11		
1n7eA	97	1.86e-11	b.36.1.1	91691
2pa1A	87	1.92e-11		
1qauA	112	2.07e-11	b.36.1.1	24779
1nf3C	128	2.40e-11	b.36.1.1	85596
2jikA	101	2.74e-11		
2q3gA	89	2.74e-11		
2pktA	91	2.90e-11		
2jilA	97	3.06e-11		
2uzcA	88	3.17e-11		
1q3oA	109	3.97e-11	b.36.1.1	95700
1qavA	90	5.05e-11	b.36.1.1	24777
2qkvA	96	6.13e-11		
1fc6A	388	6.62e-11	b.36.1.3,c.14.1.2	64738,64739
2fcfA	103	7.00e-11	b.36.1.1	133267
2egoA	96	7.07e-11		
2iwoA	120	7.99e-11		
1kwaA	88	8.12e-11	b.36.1.1	24772
1wf7A	103	9.02e-11	b.36.1.1	114577
2i04A	85	1.12e-10		
2q9vA	90	1.18e-10		
2h2bA	107	1.31e-10		
1ihjA	98	1.36e-10	b.36.1.1	62382
2vphA	100	1.65e-10		
2eaqA	90	1.72e-10		
2f0aA	98	1.83e-10	b.36.1.1	132661
1r6jA	82	1.94e-10	b.36.1.1	97151
2reyA	100	2.13e-10		
1x45A	98	3.36e-10	b.36.1.1	121679
2gzvA	114	5.45e-10		
3bpuA	88	7.48e-10		
2h3lA	103	1.05e-09	b.36.1.1	136046
1mfgA	95	1.29e-09	b.36.1.1	79043
2rczA	81	2.19e-09		
2p3wA	112	6.97e-06		
1y8tA	324	7.12e-06	b.36.1.4,b.47.1.1	122763,122764
1te0A	318	2.79e-05	b.36.1.4,b.47.1.1	112400,112401
1lcyA	325	3.45e-05	b.36.1.4,b.47.1.1	73834,73835
1j7xA	302	0.000774	c.14.1.2	66425
1k32A	1045	0.005270	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	2.083		
2adzA	178	6.244	b.55.1.1	126599
2g8oA	264	6.475	d.117.1.1	134779
1l1qA	186	6.746	c.61.1.1	77653
2g8mA	264	7.096		
1bkpA	278	7.737	d.117.1.1	41029
1w30A	201	9.196	c.61.1.1	114118
1zn8A	180	9.919	c.61.1.1	125376
1u9yA	284	13.88	c.61.1.2,c.61.1.2	119655,119656
1f28A	297	15.48	d.117.1.1	59608
1ypvA	313	16.56		
2zbvA	263	20.33		
1qqqA	264	22.71	d.117.1.1	40931
2cw5A	255	24.26		
2igbA	179	25.03		
1v9sA	208	25.48	c.61.1.1	119894
2yzkA	178	27.14		
1dkuA	317	29.26	c.61.1.2,c.61.1.2	34118,34119
2q6kA	283	29.71		
1vctA	205	29.82	a.7.12.1,d.286.1.1	119986,119987
2f4nA	273	31.64		
1fi2A	201	32.05	b.82.1.2	59845
1h5rA	293	32.38	c.68.1.6	65623
2p1zA	180	33.85		
2j3tD	219	34.45		
2jbhA	225	35.48		
1g2qA	187	36.83	c.61.1.1	65117
1zlqA	502	37.49	c.94.1.1	125253
1mi8A	158	38.08	b.86.1.2	91279
1y0bA	197	41.53	c.61.1.1	122476
2og9A	393	44.58		
2hcrA	326	45.12		
1a3c	181	45.60		
1l5jA	865	47.50	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1lh0A	213	48.45	c.61.1.1	73896
2gsmB	262	50.60	b.6.1.2,f.17.2.1	135590,135591
1cjbA	231	52.07	c.61.1.1	34079
1ev5A	264	52.40	d.117.1.1	40935
2et1A	201	53.33	b.82.1.2	132351
2aeeA	211	53.52	c.61.1.1	126620
1f5nA	592	55.66	a.114.1.1,c.37.1.8	19077,32152
1b5eA	246	55.99	d.117.1.1	41056
3bpkA	206	58.07		
2pezA	179	62.75		
1p2fA	220	62.75	a.4.6.1,c.23.1.1	87720,87721
1dmgA	225	65.00	c.22.1.1	31036
1fitA	147	66.94	d.13.1.1	37499
1rqpA	299	69.14	b.141.1.1,c.132.1.1	97754,97755
2vesA	299	71.14		
2o7iA	592	73.95		
3bhxA	709	75.81		
1tz0A	114	80.08	d.58.4.5	107463
2i62A	265	81.47		
1c9oA	66	82.92	b.40.4.5	25325
1bd3A	243	84.74	c.61.1.1	34098
1s98A	107	86.75	b.124.1.1	105377
2yzqA	282	88.57		
1vchA	175	89.27	c.61.1.1	119980