# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	3.89e-12	b.36.1.1	60400
2he4A	90	6.02e-12		
2ozfA	92	6.55e-12		
1tp5A	119	8.04e-12	b.36.1.1	119305
2he2A	102	8.44e-12		
2v90A	96	9.77e-12		
2qg1A	92	1.48e-11		
2ocsA	88	1.97e-11		
2fneA	117	2.11e-11	b.36.1.1	133813
2iwnA	97	2.35e-11		
2fe5A	94	2.74e-11	b.36.1.1	133323
2awxA	105	2.97e-11		
2opgA	98	3.00e-11		
2f5yA	91	3.86e-11	b.36.1.1	133015
2i1nA	102	4.27e-11		
1n7eA	97	5.11e-11	b.36.1.1	91691
1qauA	112	5.51e-11	b.36.1.1	24779
2pa1A	87	6.16e-11		
1nf3C	128	6.88e-11	b.36.1.1	85596
2q3gA	89	8.32e-11		
2pktA	91	9.24e-11		
2jikA	101	9.26e-11		
2jilA	97	9.48e-11		
2uzcA	88	9.99e-11		
1qavA	90	1.17e-10	b.36.1.1	24777
1q3oA	109	1.22e-10	b.36.1.1	95700
2qkvA	96	1.57e-10		
1fc6A	388	1.75e-10	b.36.1.3,c.14.1.2	64738,64739
2egoA	96	1.95e-10		
2fcfA	103	1.97e-10	b.36.1.1	133267
2iwoA	120	2.19e-10		
1wf7A	103	2.24e-10	b.36.1.1	114577
1kwaA	88	2.39e-10	b.36.1.1	24772
2i04A	85	3.47e-10		
2q9vA	90	3.59e-10		
1ihjA	98	3.67e-10	b.36.1.1	62382
2eaqA	90	3.94e-10		
2h2bA	107	3.97e-10		
2vphA	100	4.23e-10		
1r6jA	82	5.04e-10	b.36.1.1	97151
2f0aA	98	5.17e-10	b.36.1.1	132661
2reyA	100	6.77e-10		
1x45A	98	7.38e-10	b.36.1.1	121679
2gzvA	114	1.51e-09		
3bpuA	88	1.84e-09		
2h3lA	103	2.60e-09	b.36.1.1	136046
1mfgA	95	3.71e-09	b.36.1.1	79043
2rczA	81	5.64e-09		
1y8tA	324	1.35e-05	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	1.42e-05		
1te0A	318	4.61e-05	b.36.1.4,b.47.1.1	112400,112401
1lcyA	325	5.70e-05	b.36.1.4,b.47.1.1	73834,73835
1j7xA	302	0.000766	c.14.1.2	66425
1k32A	1045	0.006164	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	3.016		
2g8oA	264	6.468	d.117.1.1	134779
2g8mA	264	7.112		
1bkpA	278	7.214	d.117.1.1	41029
2adzA	178	7.808	b.55.1.1	126599
1w30A	201	8.784	c.61.1.1	114118
1ypvA	313	9.380		
1zn8A	180	10.07	c.61.1.1	125376
1u9yA	284	13.47	c.61.1.2,c.61.1.2	119655,119656
1f28A	297	15.19	d.117.1.1	59608
1l1qA	186	16.37	c.61.1.1	77653
1qqqA	264	19.73	d.117.1.1	40931
2igbA	179	24.01		
2yzkA	178	27.29		
1dkuA	317	28.27	c.61.1.2,c.61.1.2	34118,34119
2zbvA	263	28.30		
2og9A	393	30.85		
2p1zA	180	31.30		
1v9sA	208	33.72	c.61.1.1	119894
2jbhA	225	34.03		
1a3c	181	37.59		
1g2qA	187	37.87	c.61.1.1	65117
1h5rA	293	38.41	c.68.1.6	65623
2q6kA	283	39.49		
1fi2A	201	39.53	b.82.1.2	59845
2f4nA	273	39.72		
2cw5A	255	40.34		
1ev5A	264	40.40	d.117.1.1	40935
1lh0A	213	41.18	c.61.1.1	73896
1zlqA	502	42.36	c.94.1.1	125253
1y0bA	197	44.32	c.61.1.1	122476
1vctA	205	45.40	a.7.12.1,d.286.1.1	119986,119987
1cjbA	231	45.95	c.61.1.1	34079
1b5eA	246	47.03	d.117.1.1	41056
2hcrA	326	48.72		
2aeeA	211	48.97	c.61.1.1	126620
2gsmB	262	53.13	b.6.1.2,f.17.2.1	135590,135591
2pezA	179	53.53		
2j3tD	219	54.39		
1p2fA	220	56.90	a.4.6.1,c.23.1.1	87720,87721
2et1A	201	57.86	b.82.1.2	132351
1mi8A	158	60.76	b.86.1.2	91279
1f5nA	592	62.00	a.114.1.1,c.37.1.8	19077,32152
2nwhA	317	65.96		
3bhxA	709	68.66		
2g5cA	281	72.24	a.100.1.12,c.2.1.6	134646,134647
1tz0A	114	74.60	d.58.4.5	107463
1oroA	213	74.62	c.61.1.1	34093
1ra9	159	76.79		
2ef0A	301	77.29		
3bpkA	206	77.82		
1a3cA	181	78.01	c.61.1.1	34095
2vesA	299	78.30		
1fitA	147	80.20	d.13.1.1	37499
1lvwA	295	82.20	c.68.1.6	84723
1dmgA	225	82.65	c.22.1.1	31036
1l5jA	865	82.93	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1srrA	124	86.22	c.23.1.1	31110
2qzjA	136	86.24		
1rqpA	299	86.79	b.141.1.1,c.132.1.1	97754,97755
2o7iA	592	87.38		
4dfrA	159	88.22	c.71.1.1	34822