# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	2.41e-12	b.36.1.1	60400
2he4A	90	4.04e-12		
2ozfA	92	5.44e-12		
2qg1A	92	6.38e-12		
2he2A	102	7.89e-12		
2v90A	96	9.74e-12		
2ocsA	88	1.55e-11		
1tp5A	119	1.61e-11	b.36.1.1	119305
2iwnA	97	1.86e-11		
2awxA	105	1.87e-11		
2f5yA	91	1.95e-11	b.36.1.1	133015
2fneA	117	2.05e-11	b.36.1.1	133813
2opgA	98	2.12e-11		
2fe5A	94	2.35e-11	b.36.1.1	133323
2jikA	101	4.15e-11		
1qauA	112	5.01e-11	b.36.1.1	24779
2uzcA	88	5.02e-11		
2i1nA	102	5.06e-11		
2q3gA	89	6.16e-11		
1n7eA	97	6.50e-11	b.36.1.1	91691
1nf3C	128	6.85e-11	b.36.1.1	85596
2jilA	97	7.04e-11		
2pa1A	87	7.79e-11		
2pktA	91	7.96e-11		
1q3oA	109	8.21e-11	b.36.1.1	95700
2fcfA	103	9.21e-11	b.36.1.1	133267
2qkvA	96	9.78e-11		
1ihjA	98	9.82e-11	b.36.1.1	62382
1qavA	90	1.10e-10	b.36.1.1	24777
2q9vA	90	1.13e-10		
2h2bA	107	1.17e-10		
1wf7A	103	1.18e-10	b.36.1.1	114577
2f0aA	98	1.38e-10	b.36.1.1	132661
2egoA	96	1.70e-10		
2i04A	85	1.70e-10		
1x45A	98	1.77e-10	b.36.1.1	121679
2reyA	100	2.00e-10		
2vphA	100	2.17e-10		
2iwoA	120	2.90e-10		
1kwaA	88	3.04e-10	b.36.1.1	24772
1r6jA	82	3.37e-10	b.36.1.1	97151
2gzvA	114	6.23e-10		
2h3lA	103	7.30e-10	b.36.1.1	136046
1fc6A	388	7.90e-10	b.36.1.3,c.14.1.2	64738,64739
3bpuA	88	8.25e-10		
1mfgA	95	8.70e-10	b.36.1.1	79043
2eaqA	90	1.68e-09		
2rczA	81	1.54e-08		
2p3wA	112	9.30e-06		
1y8tA	324	1.19e-05	b.36.1.4,b.47.1.1	122763,122764
1lcyA	325	1.85e-05	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	4.67e-05	b.36.1.4,b.47.1.1	112400,112401
1k32A	1045	0.01067	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.01623	c.14.1.2	66425
2i6vA	87	0.7017		
2j3tD	219	14.98		
1ypvA	313	18.88		
2ek5A	129	34.43		
2igbA	179	39.71		
1bkpA	278	45.58	d.117.1.1	41029
2j73A	103	45.71		
2d59A	144	48.32	c.2.1.8	131266
2g8oA	264	48.50	d.117.1.1	134779
1qqqA	264	51.44	d.117.1.1	40931
1w30A	201	52.13	c.61.1.1	114118
2r8rA	228	53.28		
3by6A	126	54.11		
2g5cA	281	56.17	a.100.1.12,c.2.1.6	134646,134647
1vctA	205	56.42	a.7.12.1,d.286.1.1	119986,119987
2gsmB	262	56.85	b.6.1.2,f.17.2.1	135590,135591
2g8mA	264	58.11		
1mi8A	158	63.68	b.86.1.2	91279
1tz0A	114	65.78	d.58.4.5	107463
2burB	241	65.96	b.3.6.1	129228
1f28A	297	67.65	d.117.1.1	59608
2pfuA	99	71.48		
1kgsA	225	84.83	a.4.6.1,c.23.1.1	68596,68597
1fitA	147	85.80	d.13.1.1	37499
2gebA	185	86.15