# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	1.68e-11	b.36.1.1	60400
1tp5A	119	3.61e-11	b.36.1.1	119305
2he2A	102	3.65e-11		
2he4A	90	3.89e-11		
2ozfA	92	3.93e-11		
2v90A	96	4.10e-11		
2ocsA	88	8.51e-11		
2iwnA	97	1.23e-10		
2fneA	117	1.29e-10	b.36.1.1	133813
2awxA	105	1.29e-10		
2opgA	98	1.65e-10		
2qg1A	92	1.76e-10		
2f5yA	91	1.89e-10	b.36.1.1	133015
2fe5A	94	2.09e-10	b.36.1.1	133323
2i1nA	102	2.29e-10		
1qauA	112	2.84e-10	b.36.1.1	24779
2q3gA	89	2.85e-10		
1nf3C	128	2.97e-10	b.36.1.1	85596
2jilA	97	3.20e-10		
2pa1A	87	3.25e-10		
2pktA	91	3.25e-10		
2jikA	101	3.54e-10		
2uzcA	88	3.70e-10		
1q3oA	109	4.24e-10	b.36.1.1	95700
1n7eA	97	4.29e-10	b.36.1.1	91691
2qkvA	96	6.05e-10		
2egoA	96	6.64e-10		
1qavA	90	7.54e-10	b.36.1.1	24777
2iwoA	120	7.77e-10		
1wf7A	103	9.04e-10	b.36.1.1	114577
2fcfA	103	1.06e-09	b.36.1.1	133267
2q9vA	90	1.14e-09		
2h2bA	107	1.20e-09		
1kwaA	88	1.24e-09	b.36.1.1	24772
1ihjA	98	1.34e-09	b.36.1.1	62382
1fc6A	388	1.37e-09	b.36.1.3,c.14.1.2	64738,64739
2vphA	100	1.38e-09		
2f0aA	98	1.61e-09	b.36.1.1	132661
2i04A	85	1.79e-09		
2reyA	100	2.04e-09		
1r6jA	82	2.15e-09	b.36.1.1	97151
2eaqA	90	2.49e-09		
2gzvA	114	6.26e-09		
1x45A	98	6.45e-09	b.36.1.1	121679
3bpuA	88	6.97e-09		
2h3lA	103	7.66e-09	b.36.1.1	136046
1mfgA	95	9.78e-09	b.36.1.1	79043
2rczA	81	1.75e-08		
1y8tA	324	1.98e-05	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	2.55e-05		
1te0A	318	7.51e-05	b.36.1.4,b.47.1.1	112400,112401
1lcyA	325	0.000126	b.36.1.4,b.47.1.1	73834,73835
1j7xA	302	0.001934	c.14.1.2	66425
1k32A	1045	0.01493	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	1.341		
2g8oA	264	8.098	d.117.1.1	134779
2g8mA	264	8.682		
1zn8A	180	9.672	c.61.1.1	125376
1w30A	201	10.13	c.61.1.1	114118
1ypvA	313	11.94		
1y0bA	197	12.23	c.61.1.1	122476
1vchA	175	12.63	c.61.1.1	119980
2aeeA	211	12.82	c.61.1.1	126620
1bkpA	278	13.03	d.117.1.1	41029
2adzA	178	16.17	b.55.1.1	126599
2igbA	179	19.89		
2p1zA	180	19.95		
1l1qA	186	20.05	c.61.1.1	77653
1mi8A	158	21.39	b.86.1.2	91279
1qqqA	264	23.34	d.117.1.1	40931
2zbvA	263	26.56		
2jbhA	225	26.58		
2yzkA	178	27.14		
1a3c	181	27.71		
2nwhA	317	29.15		
1u9yA	284	30.62	c.61.1.2,c.61.1.2	119655,119656
2z1cA	75	31.09		
2j3tD	219	32.22		
1oj7A	408	33.36	e.22.1.2	103971
1g2qA	187	33.64	c.61.1.1	65117
1f28A	297	35.74	d.117.1.1	59608
2q6kA	283	36.67		
2cw5A	255	37.06		
1h5rA	293	38.57	c.68.1.6	65623
1cjbA	231	40.04	c.61.1.1	34079
1i0lA	221	41.89	c.61.1.1	71096
1a3cA	181	51.02	c.61.1.1	34095
2f4nA	273	51.65		
1ev5A	264	53.24	d.117.1.1	40935
2hcrA	326	56.48		
1h9oA	112	56.53	d.93.1.1	60837
1lh0A	213	57.56	c.61.1.1	73896
2gebA	185	58.65		
1dkuA	317	59.35	c.61.1.2,c.61.1.2	34118,34119
1fsgA	233	62.10	c.61.1.1	34029
1c9oA	66	66.84	b.40.4.5	25325
1l3kA	196	67.87	d.58.7.1,d.58.7.1	73539,73540
1rqpA	299	72.86	b.141.1.1,c.132.1.1	97754,97755
1vctA	205	73.48	a.7.12.1,d.286.1.1	119986,119987
2gsmB	262	76.36	b.6.1.2,f.17.2.1	135590,135591
2og9A	393	77.12		
1f5nA	592	78.14	a.114.1.1,c.37.1.8	19077,32152
2ef0A	301	79.43		
1ra9	159	80.26		
1p2fA	220	83.76	a.4.6.1,c.23.1.1	87720,87721
3bs5A	106	85.33		
1zlqA	502	89.13	c.94.1.1	125253