# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 3.58e-14 b.36.1.1 60400 2he2A 102 4.20e-14 2he4A 90 8.16e-14 1tp5A 119 8.59e-14 b.36.1.1 119305 2ozfA 92 9.22e-14 2v90A 96 1.16e-13 2ocsA 88 2.57e-13 2qg1A 92 3.47e-13 2awxA 105 4.33e-13 2jilA 97 4.50e-13 2iwnA 97 4.67e-13 2opgA 98 5.86e-13 2pktA 91 6.43e-13 2f5yA 91 6.77e-13 b.36.1.1 133015 2i1nA 102 7.05e-13 2fe5A 94 7.56e-13 b.36.1.1 133323 1qavA 90 8.40e-13 b.36.1.1 24777 1qauA 112 9.41e-13 b.36.1.1 24779 2jikA 101 9.86e-13 2iwoA 120 1.04e-12 1n7eA 97 1.18e-12 b.36.1.1 91691 2q3gA 89 1.25e-12 1wf7A 103 1.26e-12 b.36.1.1 114577 2pa1A 87 1.33e-12 2uzcA 88 1.58e-12 1kwaA 88 1.60e-12 b.36.1.1 24772 1q3oA 109 1.73e-12 b.36.1.1 95700 1nf3C 128 1.76e-12 b.36.1.1 85596 2egoA 96 2.44e-12 2qkvA 96 2.71e-12 2fneA 117 3.34e-12 b.36.1.1 133813 2fcfA 103 5.54e-12 b.36.1.1 133267 2q9vA 90 6.23e-12 1ihjA 98 6.74e-12 b.36.1.1 62382 2eaqA 90 7.64e-12 2vphA 100 8.60e-12 2h2bA 107 8.62e-12 2i04A 85 9.01e-12 1r6jA 82 9.89e-12 b.36.1.1 97151 2reyA 100 1.36e-11 1x45A 98 2.59e-11 b.36.1.1 121679 2f0aA 98 2.83e-11 b.36.1.1 132661 2gzvA 114 2.83e-11 2h3lA 103 6.60e-11 b.36.1.1 136046 3bpuA 88 8.00e-11 1mfgA 95 8.89e-11 b.36.1.1 79043 2rczA 81 1.78e-10 1fc6A 388 4.39e-09 b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 2.14e-06 b.36.1.4,b.47.1.1 73834,73835 2p3wA 112 2.41e-06 1te0A 318 0.000282 b.36.1.4,b.47.1.1 112400,112401 1y8tA 324 0.001307 b.36.1.4,b.47.1.1 122763,122764 1j7xA 302 0.004281 c.14.1.2 66425 1l1qA 186 0.5662 c.61.1.1 77653 2i6vA 87 0.6279 2aeeA 211 1.575 c.61.1.1 126620 1zn8A 180 3.168 c.61.1.1 125376 1yp2A 451 3.353 b.81.1.4,c.68.1.6 123798,123799 3bpkA 206 3.443 2nt0A 497 3.466 b.71.1.2,c.1.8.3 138561,138562 1w30A 201 3.872 c.61.1.1 114118 1y0bA 197 4.596 c.61.1.1 122476 1vf8A 377 5.612 c.1.8.5,d.26.3.1 120029,120030 1vchA 175 5.640 c.61.1.1 119980 1g2qA 187 5.656 c.61.1.1 65117 2adzA 178 7.203 b.55.1.1 126599 2dkaA 544 8.653 1p2fA 220 11.62 a.4.6.1,c.23.1.1 87720,87721 1oj7A 408 13.51 e.22.1.2 103971 2epgA 487 15.12 1b5eA 246 15.18 d.117.1.1 41056 2v40A 459 15.40 1a3c 181 15.46 2og9A 393 18.77 1j7jA 178 19.09 c.61.1.1 84131 1rqpA 299 19.84 b.141.1.1,c.132.1.1 97754,97755 2jbhA 225 20.42 1vctA 205 21.47 a.7.12.1,d.286.1.1 119986,119987 2yzkA 178 21.50 1l5jA 865 21.67 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 2vesA 299 22.56 1jr7A 311 22.92 b.82.2.3 63255 1l3kA 196 23.33 d.58.7.1,d.58.7.1 73539,73540 1oqvA 192 23.51 d.24.1.2 87320 2r0cA 549 24.94 2gj2A 85 26.12 2zbvA 263 26.18 2dx0A 138 29.14 1hyuA 521 31.17 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1ro0A 216 31.98 d.264.1.2 97664 1h5rA 293 32.54 c.68.1.6 65623 1u9yA 284 33.58 c.61.1.2,c.61.1.2 119655,119656 2p1zA 180 34.19 2vhsA 217 34.38 2g5cA 281 34.42 a.100.1.12,c.2.1.6 134646,134647 2f4nA 273 35.27 2cmgA 262 36.00 1a3cA 181 39.02 c.61.1.1 34095 1arb 268 39.81 1c3pA 375 40.41 c.42.1.2 32606 2imhA 231 40.52 1mkyA 439 40.89 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 3biqA 467 41.86 3b3qE 197 44.46 1c4rA 182 44.63 b.29.1.4 24229 1hgxA 183 44.88 c.61.1.1 34027 2o7iA 592 44.96 2vr4A 846 45.23 2dpyA 438 45.57 1zynA 202 46.87 c.47.1.2,c.47.1.2 125838,125839 2j3tD 219 46.87 1h9oA 112 46.90 d.93.1.1 60837 1ed8A 449 49.36 c.76.1.1 34988 1i0lA 221 49.80 c.61.1.1 71096 1fi2A 201 50.44 b.82.1.2 59845 2ywuA 181 50.89 1vr7A 142 51.09 d.156.1.2 120443 2gebA 185 51.56 1m2tB 263 52.51 b.42.2.1,b.42.2.1 84762,84763 2qf2A 624 57.58 1yw5A 177 57.60 2choA 716 58.30 a.246.1.1,c.1.8.10,d.92.2.3 130479,130480,130481 1o57A 291 58.54 a.4.5.40,c.61.1.1 92483,92484 1l0wA 580 59.43 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1dkuA 317 59.97 c.61.1.2,c.61.1.2 34118,34119 1xrsA 516 60.03 c.1.19.4 115883 1qo8A 566 60.23 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2pfsA 150 61.29 2qn6A 414 61.46 3bbdA 205 62.27 2f2hA 773 63.42 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 3vubA 101 64.45 b.34.6.1 24613 1id1A 153 65.61 c.2.1.9 62286 1fsgA 233 66.57 c.61.1.1 34029 2fxqA 264 66.93 1eceA 358 72.30 c.1.8.3 28813 2az4A 429 73.37 d.157.1.10 127597 2oqhA 385 74.09 2ebn 289 75.88 1vmkA 277 76.78 c.56.2.1 113680 2yv5A 302 77.50 1heiA 451 77.93 c.37.1.14,c.37.1.14 32463,32464 1se8A 301 80.10 b.40.4.3 105448 1yxaA 398 81.10 1ulyA 192 81.71 a.4.5.58 113297 1ofdA 1520 82.29 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1cb8A 678 82.96 a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1jwoA 97 83.18 d.93.1.1 63310 1h6lA 353 83.45 b.68.3.1 60687 1g0sA 209 84.61 d.113.1.1 60187 1b12A 248 84.62 b.87.1.2 28388 2et1A 201 85.81 b.82.1.2 132351 2gl5A 410 85.86 c.1.11.2,d.54.1.1 135336,135337 2nx9A 464 86.17 2qr3A 140 86.30 1yioA 208 86.61 a.4.6.2,c.23.1.1 123326,123327 3bodA 178 87.76 1jdwA 423 88.83 d.126.1.2 41129