# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	1.01e-11	b.36.1.1	60400
1tp5A	119	1.67e-11	b.36.1.1	119305
2he4A	90	1.71e-11		
2he2A	102	1.90e-11		
2ozfA	92	1.99e-11		
2v90A	96	2.82e-11		
2ocsA	88	5.17e-11		
2awxA	105	5.79e-11		
2qg1A	92	6.50e-11		
2iwnA	97	7.21e-11		
2fneA	117	7.35e-11	b.36.1.1	133813
2fe5A	94	8.12e-11	b.36.1.1	133323
2opgA	98	9.11e-11		
2f5yA	91	1.05e-10	b.36.1.1	133015
2i1nA	102	1.16e-10		
1qauA	112	1.18e-10	b.36.1.1	24779
1nf3C	128	1.70e-10	b.36.1.1	85596
2jikA	101	1.83e-10		
2jilA	97	1.86e-10		
1n7eA	97	1.94e-10	b.36.1.1	91691
2pktA	91	2.22e-10		
2q3gA	89	2.31e-10		
2pa1A	87	2.37e-10		
1q3oA	109	2.54e-10	b.36.1.1	95700
2uzcA	88	2.70e-10		
2qkvA	96	3.07e-10		
2egoA	96	3.14e-10		
1qavA	90	3.99e-10	b.36.1.1	24777
2iwoA	120	4.84e-10		
1kwaA	88	5.65e-10	b.36.1.1	24772
2fcfA	103	6.07e-10	b.36.1.1	133267
2q9vA	90	7.16e-10		
2h2bA	107	7.30e-10		
1wf7A	103	7.34e-10	b.36.1.1	114577
1ihjA	98	7.38e-10	b.36.1.1	62382
2f0aA	98	8.57e-10	b.36.1.1	132661
2vphA	100	9.24e-10		
1fc6A	388	9.49e-10	b.36.1.3,c.14.1.2	64738,64739
2reyA	100	1.10e-09		
1r6jA	82	1.21e-09	b.36.1.1	97151
2i04A	85	1.32e-09		
2eaqA	90	1.77e-09		
1x45A	98	2.14e-09	b.36.1.1	121679
3bpuA	88	4.33e-09		
2h3lA	103	4.54e-09	b.36.1.1	136046
2gzvA	114	5.04e-09		
1mfgA	95	5.41e-09	b.36.1.1	79043
2rczA	81	1.49e-08		
2p3wA	112	2.19e-05		
1y8tA	324	2.36e-05	b.36.1.4,b.47.1.1	122763,122764
1te0A	318	7.18e-05	b.36.1.4,b.47.1.1	112400,112401
1lcyA	325	0.000150	b.36.1.4,b.47.1.1	73834,73835
1j7xA	302	0.001818	c.14.1.2	66425
1k32A	1045	0.02345	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	3.564		
1w30A	201	7.946	c.61.1.1	114118
2g8oA	264	10.06	d.117.1.1	134779
2g8mA	264	10.72		
1zn8A	180	11.56	c.61.1.1	125376
2adzA	178	12.69	b.55.1.1	126599
1ypvA	313	13.33		
2igbA	179	16.04		
1bkpA	278	17.29	d.117.1.1	41029
1g2qA	187	19.49	c.61.1.1	65117
1qqqA	264	20.96	d.117.1.1	40931
1y0bA	197	21.15	c.61.1.1	122476
1vctA	205	21.38	a.7.12.1,d.286.1.1	119986,119987
2aeeA	211	21.53	c.61.1.1	126620
1l1qA	186	24.96	c.61.1.1	77653
2p1zA	180	25.60		
2jbhA	225	25.83		
1f28A	297	27.99	d.117.1.1	59608
1vchA	175	28.05	c.61.1.1	119980
1lh0A	213	29.14	c.61.1.1	73896
1mi8A	158	29.64	b.86.1.2	91279
1a3c	181	32.19		
2og9A	393	32.90		
1u9yA	284	35.04	c.61.1.2,c.61.1.2	119655,119656
2yzkA	178	35.57		
1h5rA	293	38.35	c.68.1.6	65623
2j3tD	219	39.41		
1cjbA	231	42.98	c.61.1.1	34079
1ev5A	264	47.32	d.117.1.1	40935
1oj7A	408	49.43	e.22.1.2	103971
1dkuA	317	50.13	c.61.1.2,c.61.1.2	34118,34119
1f5nA	592	51.39	a.114.1.1,c.37.1.8	19077,32152
2gebA	185	54.42		
1fi2A	201	58.62	b.82.1.2	59845
1zlqA	502	58.67	c.94.1.1	125253
2cw5A	255	60.13		
2hcrA	326	63.51		
1h9oA	112	67.39	d.93.1.1	60837
2zbvA	263	68.19		
1a3cA	181	68.91	c.61.1.1	34095
2q6kA	283	69.26		
1vmkA	277	69.28	c.56.2.1	113680
1i0lA	221	72.28	c.61.1.1	71096
2vesA	299	73.10		
1c9oA	66	74.25	b.40.4.5	25325
1b5eA	246	78.42	d.117.1.1	41056
1oroA	213	79.61	c.61.1.1	34093
1t6t1	118	84.07		
1wd5A	208	84.64	c.61.1.1	114524
1ua4A	455	84.72	c.72.1.3	99128
2nwhA	317	85.43		
2v40A	459	85.60		
3bbdA	205	86.11		
1l5jA	865	86.81	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1dmgA	225	87.48	c.22.1.1	31036
3bs5A	106	88.37		
1fsgA	233	88.86	c.61.1.1	34029
2dx0A	138	89.56