# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 7.73e-14 b.36.1.1 60400 2he2A 102 1.19e-13 2he4A 90 1.32e-13 1tp5A 119 1.62e-13 b.36.1.1 119305 2ozfA 92 1.68e-13 2v90A 96 3.05e-13 2ocsA 88 5.05e-13 2qg1A 92 5.22e-13 2awxA 105 6.04e-13 2fneA 117 7.65e-13 b.36.1.1 133813 2iwnA 97 7.98e-13 2fe5A 94 8.49e-13 b.36.1.1 133323 2opgA 98 8.80e-13 1qauA 112 9.82e-13 b.36.1.1 24779 2f5yA 91 1.31e-12 b.36.1.1 133015 1n7eA 97 1.50e-12 b.36.1.1 91691 1nf3C 128 1.89e-12 b.36.1.1 85596 2i1nA 102 1.96e-12 2jilA 97 2.03e-12 2pa1A 87 2.32e-12 2jikA 101 2.93e-12 2qkvA 96 3.48e-12 2pktA 91 3.57e-12 2q3gA 89 3.70e-12 1wf7A 103 4.36e-12 b.36.1.1 114577 2uzcA 88 4.46e-12 1qavA 90 4.73e-12 b.36.1.1 24777 2egoA 96 4.86e-12 2iwoA 120 6.02e-12 1q3oA 109 6.52e-12 b.36.1.1 95700 2q9vA 90 7.60e-12 1kwaA 88 7.94e-12 b.36.1.1 24772 2fcfA 103 8.42e-12 b.36.1.1 133267 1fc6A 388 8.82e-12 b.36.1.3,c.14.1.2 64738,64739 2eaqA 90 9.29e-12 1ihjA 98 1.30e-11 b.36.1.1 62382 2i04A 85 1.41e-11 2f0aA 98 1.43e-11 b.36.1.1 132661 2vphA 100 1.76e-11 2reyA 100 1.96e-11 1r6jA 82 2.04e-11 b.36.1.1 97151 1x45A 98 2.27e-11 b.36.1.1 121679 2h2bA 107 2.35e-11 2gzvA 114 7.27e-11 2rczA 81 1.12e-10 3bpuA 88 1.14e-10 2h3lA 103 1.42e-10 b.36.1.1 136046 1mfgA 95 2.32e-10 b.36.1.1 79043 1y8tA 324 4.12e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 4.66e-06 1te0A 318 1.16e-05 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 1.90e-05 b.36.1.4,b.47.1.1 73834,73835 1j7xA 302 0.000254 c.14.1.2 66425 1k32A 1045 0.009349 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2adzA 178 1.784 b.55.1.1 126599 2i6vA 87 3.300 1w30A 201 8.710 c.61.1.1 114118 1bkpA 278 9.552 d.117.1.1 41029 2g8oA 264 9.903 d.117.1.1 134779 2g8mA 264 11.85 1f28A 297 14.62 d.117.1.1 59608 2og9A 393 15.78 1qqqA 264 16.29 d.117.1.1 40931 1ev5A 264 24.61 d.117.1.1 40935 1zlqA 502 28.67 c.94.1.1 125253 1vctA 205 30.43 a.7.12.1,d.286.1.1 119986,119987 2igbA 179 32.05 1l3kA 196 33.88 d.58.7.1,d.58.7.1 73539,73540 1l1qA 186 37.51 c.61.1.1 77653 1ypvA 313 38.28 2cw5A 255 39.07 2q6kA 283 39.16 4dfrA 159 44.69 c.71.1.1 34822 2zbvA 263 44.79 1mi8A 158 45.78 b.86.1.2 91279 1ra9 159 47.42 1a3c 181 47.55 2nwhA 317 47.66 2f4nA 273 49.03 2jbhA 225 49.68 1tz0A 114 50.91 d.58.4.5 107463 1u9yA 284 52.65 c.61.1.2,c.61.1.2 119655,119656 1p2fA 220 53.61 a.4.6.1,c.23.1.1 87720,87721 3bpkA 206 53.83 1g2qA 187 53.95 c.61.1.1 65117 2vesA 299 54.69 1c9oA 66 55.60 b.40.4.5 25325 2d5wA 603 55.80 2gsmB 262 61.46 b.6.1.2,f.17.2.1 135590,135591 1fi2A 201 62.13 b.82.1.2 59845 2bmfA 451 62.40 c.37.1.14,c.37.1.14 128791,128792 2pbtA 134 65.02 2p1zA 180 65.29 1b5eA 246 66.06 d.117.1.1 41056 2rdyA 803 69.17 2j3tD 219 69.84 2h5uA 499 72.88 2pezA 179 77.68 1dmgA 225 78.14 c.22.1.1 31036 1lh0A 213 79.91 c.61.1.1 73896 1fitA 147 83.42 d.13.1.1 37499 2v40A 459 84.70 2etjA 250 88.11 c.55.3.1 132360 2et1A 201 89.25 b.82.1.2 132351