# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 5.55e-13 b.36.1.1 60400 2ozfA 92 9.70e-13 2he4A 90 1.02e-12 2v90A 96 1.24e-12 2he2A 102 1.27e-12 1tp5A 119 1.34e-12 b.36.1.1 119305 2ocsA 88 4.28e-12 2qg1A 92 5.11e-12 2fneA 117 7.06e-12 b.36.1.1 133813 2iwnA 97 7.13e-12 2awxA 105 7.64e-12 2opgA 98 8.90e-12 2i1nA 102 9.94e-12 2fe5A 94 1.08e-11 b.36.1.1 133323 1qauA 112 1.13e-11 b.36.1.1 24779 1n7eA 97 1.22e-11 b.36.1.1 91691 2jikA 101 1.37e-11 2f5yA 91 1.42e-11 b.36.1.1 133015 1nf3C 128 2.11e-11 b.36.1.1 85596 2egoA 96 2.17e-11 2pa1A 87 2.21e-11 2jilA 97 2.31e-11 1q3oA 109 2.80e-11 b.36.1.1 95700 2q3gA 89 3.23e-11 1fc6A 388 3.67e-11 b.36.1.3,c.14.1.2 64738,64739 2pktA 91 4.23e-11 1wf7A 103 5.02e-11 b.36.1.1 114577 2iwoA 120 5.15e-11 2uzcA 88 5.45e-11 2fcfA 103 5.69e-11 b.36.1.1 133267 2qkvA 96 5.79e-11 2q9vA 90 8.16e-11 1qavA 90 8.21e-11 b.36.1.1 24777 2eaqA 90 9.25e-11 1r6jA 82 9.94e-11 b.36.1.1 97151 1kwaA 88 1.02e-10 b.36.1.1 24772 2i04A 85 1.06e-10 2h2bA 107 1.07e-10 2f0aA 98 1.15e-10 b.36.1.1 132661 1ihjA 98 1.37e-10 b.36.1.1 62382 1x45A 98 1.42e-10 b.36.1.1 121679 2reyA 100 1.87e-10 2vphA 100 1.94e-10 2gzvA 114 4.23e-10 2h3lA 103 4.47e-10 b.36.1.1 136046 3bpuA 88 5.46e-10 2rczA 81 5.65e-10 1mfgA 95 9.73e-10 b.36.1.1 79043 2p3wA 112 1.06e-05 1y8tA 324 1.17e-05 b.36.1.4,b.47.1.1 122763,122764 1te0A 318 2.40e-05 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 5.33e-05 b.36.1.4,b.47.1.1 73834,73835 1j7xA 302 0.000301 c.14.1.2 66425 1k32A 1045 0.002373 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2i6vA 87 2.620 2g8mA 264 5.859 2g8oA 264 6.370 d.117.1.1 134779 1f28A 297 7.010 d.117.1.1 59608 1bkpA 278 8.800 d.117.1.1 41029 1ypvA 313 12.89 1qqqA 264 15.52 d.117.1.1 40931 2adzA 178 16.20 b.55.1.1 126599 1u9yA 284 17.82 c.61.1.2,c.61.1.2 119655,119656 1g2qA 187 17.93 c.61.1.1 65117 2cw5A 255 19.72 1w30A 201 21.34 c.61.1.1 114118 1ev5A 264 22.88 d.117.1.1 40935 2q6kA 283 24.65 2igbA 179 27.76 1a3c 181 28.99 2jbhA 225 29.87 2f4nA 273 30.16 2zbvA 263 33.57 3bpkA 206 35.89 2p1zA 180 36.41 2og9A 393 40.08 2nwhA 317 40.64 1vchA 175 45.28 c.61.1.1 119980 1cjbA 231 46.27 c.61.1.1 34079 2j3tD 219 50.57 1mi8A 158 53.06 b.86.1.2 91279 1rqpA 299 54.16 b.141.1.1,c.132.1.1 97754,97755 1a3cA 181 57.56 c.61.1.1 34095 1eovA 487 59.91 b.40.4.1,d.104.1.1 25239,40760 1w8oA 601 62.48 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2yzkA 178 62.59 2ef0A 301 66.85 1b5eA 246 67.64 d.117.1.1 41056 2etjA 250 68.99 c.55.3.1 132360 1wd5A 208 70.72 c.61.1.1 114524 2pbtA 134 71.94 1fi2A 201 74.74 b.82.1.2 59845 2gsmB 262 75.23 b.6.1.2,f.17.2.1 135590,135591 2pi6A 361 75.33 2vesA 299 75.79 2h5uA 499 76.47 1vctA 205 76.50 a.7.12.1,d.286.1.1 119986,119987 1aj2A 282 78.03 c.1.21.1 29665 2o38A 120 79.39 1zlqA 502 80.43 c.94.1.1 125253 2i62A 265 80.51 1fitA 147 81.97 d.13.1.1 37499 2et1A 201 85.30 b.82.1.2 132351 2gebA 185 86.08 1dmgA 225 88.04 c.22.1.1 31036 2d5wA 603 88.47