# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	2.63e-12	b.36.1.1	60400
2he2A	102	4.79e-12		
2he4A	90	5.94e-12		
1tp5A	119	6.30e-12	b.36.1.1	119305
2ozfA	92	6.52e-12		
2v90A	96	9.78e-12		
2ocsA	88	1.40e-11		
2fneA	117	1.62e-11	b.36.1.1	133813
2fe5A	94	1.86e-11	b.36.1.1	133323
2awxA	105	1.91e-11		
2qg1A	92	1.94e-11		
2i1nA	102	2.24e-11		
2iwnA	97	2.30e-11		
2opgA	98	2.52e-11		
2f5yA	91	3.07e-11	b.36.1.1	133015
1n7eA	97	3.22e-11	b.36.1.1	91691
1qauA	112	3.56e-11	b.36.1.1	24779
2jikA	101	4.22e-11		
2jilA	97	4.46e-11		
1nf3C	128	4.59e-11	b.36.1.1	85596
2pa1A	87	5.10e-11		
2q3gA	89	6.94e-11		
2uzcA	88	8.72e-11		
2pktA	91	9.02e-11		
1qavA	90	9.28e-11	b.36.1.1	24777
1fc6A	388	1.03e-10	b.36.1.3,c.14.1.2	64738,64739
2qkvA	96	1.05e-10		
1q3oA	109	1.05e-10	b.36.1.1	95700
1kwaA	88	1.22e-10	b.36.1.1	24772
2iwoA	120	1.26e-10		
2q9vA	90	1.31e-10		
2fcfA	103	1.43e-10	b.36.1.1	133267
1wf7A	103	1.43e-10	b.36.1.1	114577
2egoA	96	1.63e-10		
2i04A	85	1.85e-10		
1ihjA	98	1.92e-10	b.36.1.1	62382
2f0aA	98	2.30e-10	b.36.1.1	132661
1r6jA	82	2.38e-10	b.36.1.1	97151
2h2bA	107	2.48e-10		
2reyA	100	3.27e-10		
1x45A	98	3.61e-10	b.36.1.1	121679
2eaqA	90	3.81e-10		
2vphA	100	4.61e-10		
2gzvA	114	8.78e-10		
2rczA	81	9.73e-10		
2h3lA	103	1.20e-09	b.36.1.1	136046
1mfgA	95	1.27e-09	b.36.1.1	79043
3bpuA	88	2.03e-09		
1y8tA	324	8.74e-06	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	1.07e-05		
1lcyA	325	3.50e-05	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	3.56e-05	b.36.1.4,b.47.1.1	112400,112401
1j7xA	302	0.001248	c.14.1.2	66425
1k32A	1045	0.008038	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	3.583		
2g8oA	264	7.846	d.117.1.1	134779
2g8mA	264	8.897		
1f28A	297	9.028	d.117.1.1	59608
1w30A	201	9.599	c.61.1.1	114118
1bkpA	278	10.04	d.117.1.1	41029
1g2qA	187	12.72	c.61.1.1	65117
1qqqA	264	13.17	d.117.1.1	40931
2adzA	178	16.92	b.55.1.1	126599
1ev5A	264	18.25	d.117.1.1	40935
2igbA	179	18.84		
1vctA	205	19.58	a.7.12.1,d.286.1.1	119986,119987
1ypvA	313	19.79		
2jbhA	225	20.02		
1u9yA	284	23.25	c.61.1.2,c.61.1.2	119655,119656
2q6kA	283	24.35		
2j3tD	219	27.16		
2z1cA	75	29.66		
2zbvA	263	32.36		
2og9A	393	34.79		
1mi8A	158	35.46	b.86.1.2	91279
2p1zA	180	35.49		
1zn8A	180	37.72	c.61.1.1	125376
2cw5A	255	39.28		
1p2fA	220	39.28	a.4.6.1,c.23.1.1	87720,87721
1a3c	181	40.00		
1v9sA	208	40.92	c.61.1.1	119894
1wd5A	208	41.81	c.61.1.1	114524
1cjbA	231	45.53	c.61.1.1	34079
2nwhA	317	45.76		
1fi2A	201	47.07	b.82.1.2	59845
2gsmB	262	50.70	b.6.1.2,f.17.2.1	135590,135591
2yzkA	178	51.67		
1ra9	159	52.56		
1f5nA	592	55.32	a.114.1.1,c.37.1.8	19077,32152
2f4nA	273	56.93		
1fitA	147	59.48	d.13.1.1	37499
2vesA	299	61.44		
1vmkA	277	65.32	c.56.2.1	113680
2i62A	265	66.75		
2et1A	201	68.05	b.82.1.2	132351
2hcrA	326	69.93		
1aj2A	282	70.33	c.1.21.1	29665
1s98A	107	73.15	b.124.1.1	105377
1lh0A	213	74.32	c.61.1.1	73896
1vchA	175	75.99	c.61.1.1	119980
3bs5A	106	76.11		
1dkuA	317	77.20	c.61.1.2,c.61.1.2	34118,34119
4dfrA	159	78.20	c.71.1.1	34822
1t6t1	118	79.74		
1l1qA	186	80.57	c.61.1.1	77653
1oroA	213	80.84	c.61.1.1	34093
1c9oA	66	81.28	b.40.4.5	25325
2o38A	120	82.46		
2burB	241	83.78	b.3.6.1	129228
1p42A	270	85.06	d.14.1.7,d.14.1.7	87754,87755
2rdyA	803	85.93		
1a3cA	181	86.63	c.61.1.1	34095
1h5rA	293	87.52	c.68.1.6	65623
1l3kA	196	87.78	d.58.7.1,d.58.7.1	73539,73540
1dmgA	225	87.91	c.22.1.1	31036