# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	1.25e-10	b.36.1.1	60400
2he2A	102	1.48e-10		
2he4A	90	2.30e-10		
2v90A	96	2.84e-10		
2ozfA	92	2.86e-10		
2fe5A	94	3.87e-10	b.36.1.1	133323
2i1nA	102	4.05e-10		
1tp5A	119	5.24e-10	b.36.1.1	119305
2qg1A	92	5.56e-10		
2opgA	98	5.91e-10		
2awxA	105	5.95e-10		
2fneA	117	6.19e-10	b.36.1.1	133813
2iwnA	97	6.66e-10		
2ocsA	88	8.17e-10		
1n7eA	97	8.30e-10	b.36.1.1	91691
1wf7A	103	8.73e-10	b.36.1.1	114577
2jikA	101	9.95e-10		
2jilA	97	1.08e-09		
2pktA	91	1.27e-09		
2q3gA	89	1.28e-09		
2uzcA	88	1.31e-09		
2f5yA	91	1.31e-09	b.36.1.1	133015
2pa1A	87	1.38e-09		
1qavA	90	2.13e-09	b.36.1.1	24777
1q3oA	109	2.98e-09	b.36.1.1	95700
2fcfA	103	3.26e-09	b.36.1.1	133267
2q9vA	90	3.52e-09		
1x45A	98	3.72e-09	b.36.1.1	121679
2vphA	100	4.13e-09		
2iwoA	120	4.37e-09		
1nf3C	128	4.82e-09	b.36.1.1	85596
1qauA	112	5.32e-09	b.36.1.1	24779
2qkvA	96	6.22e-09		
2egoA	96	6.94e-09		
1kwaA	88	6.98e-09	b.36.1.1	24772
2h2bA	107	6.98e-09		
1ihjA	98	7.72e-09	b.36.1.1	62382
2h3lA	103	9.33e-09	b.36.1.1	136046
2reyA	100	1.02e-08		
2i04A	85	1.20e-08		
2f0aA	98	1.43e-08	b.36.1.1	132661
1r6jA	82	1.49e-08	b.36.1.1	97151
1mfgA	95	1.61e-08	b.36.1.1	79043
2gzvA	114	2.24e-08		
1fc6A	388	2.64e-08	b.36.1.3,c.14.1.2	64738,64739
2eaqA	90	3.02e-08		
3bpuA	88	4.70e-08		
2rczA	81	5.40e-06		
2p3wA	112	0.000163		
1lcyA	325	0.000515	b.36.1.4,b.47.1.1	73834,73835
1y8tA	324	0.000548	b.36.1.4,b.47.1.1	122763,122764
1te0A	318	0.001191	b.36.1.4,b.47.1.1	112400,112401
1j7xA	302	0.006282	c.14.1.2	66425
1k32A	1045	0.02990	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	18.86		
2zihA	347	40.89		
1c9oA	66	47.28	b.40.4.5	25325
1w30A	201	49.04	c.61.1.1	114118
1l3kA	196	50.84	d.58.7.1,d.58.7.1	73539,73540
1jdlA	121	59.22	a.3.1.1	66557
2qsfX	171	59.54		
1n91A	108	64.47	d.206.1.1	80326
1tz0A	114	65.48	d.58.4.5	107463
1vddA	228	66.31	e.49.1.1	108519
1ro0A	216	68.76	d.264.1.2	97664
1mjcA	69	76.45	b.40.4.5	25319
1d0qA	103	78.91	g.41.3.2	45208
3bpkA	206	80.69		
2cw5A	255	83.12		
2j3tD	219	84.74		
1ro2A	216	86.60	d.264.1.2	97665
1fxlA	167	87.99	d.58.7.1,d.58.7.1	39183,39184