# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 3.70e-14 b.36.1.1 60400 2ozfA 92 6.79e-14 2v90A 96 7.46e-14 2he2A 102 7.94e-14 2he4A 90 1.17e-13 1tp5A 119 2.13e-13 b.36.1.1 119305 2qg1A 92 2.30e-13 2iwnA 97 3.12e-13 2awxA 105 3.72e-13 2fneA 117 3.81e-13 b.36.1.1 133813 2i1nA 102 5.06e-13 2jilA 97 5.80e-13 1qavA 90 5.95e-13 b.36.1.1 24777 2ocsA 88 7.03e-13 2jikA 101 7.58e-13 1nf3C 128 8.59e-13 b.36.1.1 85596 1n7eA 97 8.59e-13 b.36.1.1 91691 2fe5A 94 8.81e-13 b.36.1.1 133323 2opgA 98 8.92e-13 2pa1A 87 1.19e-12 2uzcA 88 1.45e-12 2f5yA 91 1.50e-12 b.36.1.1 133015 2q3gA 89 1.54e-12 1q3oA 109 2.06e-12 b.36.1.1 95700 2pktA 91 2.35e-12 2qkvA 96 2.58e-12 1wf7A 103 2.61e-12 b.36.1.1 114577 1qauA 112 2.63e-12 b.36.1.1 24779 1x45A 98 3.02e-12 b.36.1.1 121679 2h2bA 107 3.75e-12 1ihjA 98 3.80e-12 b.36.1.1 62382 2egoA 96 4.11e-12 2q9vA 90 4.37e-12 2iwoA 120 4.83e-12 2reyA 100 6.13e-12 2fcfA 103 6.42e-12 b.36.1.1 133267 1kwaA 88 6.86e-12 b.36.1.1 24772 2f0aA 98 7.61e-12 b.36.1.1 132661 2i04A 85 9.30e-12 2vphA 100 1.21e-11 1fc6A 388 1.95e-11 b.36.1.3,c.14.1.2 64738,64739 2gzvA 114 2.09e-11 1r6jA 82 4.69e-11 b.36.1.1 97151 2h3lA 103 5.63e-11 b.36.1.1 136046 3bpuA 88 8.14e-11 1mfgA 95 1.15e-10 b.36.1.1 79043 2eaqA 90 1.20e-10 2rczA 81 2.05e-08 2p3wA 112 1.04e-05 1lcyA 325 4.79e-05 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 8.52e-05 b.36.1.4,b.47.1.1 112400,112401 1y8tA 324 8.72e-05 b.36.1.4,b.47.1.1 122763,122764 1j7xA 302 0.002030 c.14.1.2 66425 1k32A 1045 0.08109 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2i6vA 87 0.8924 1w30A 201 5.509 c.61.1.1 114118 3bpkA 206 9.134 2qckA 167 11.48 2g8mA 264 12.21 1bkpA 278 13.02 d.117.1.1 41029 1yoaA 159 13.23 b.45.1.2 123775 2g8oA 264 15.80 d.117.1.1 134779 2r0xA 158 15.88 1qqqA 264 19.33 d.117.1.1 40931 1ypvA 313 20.99 2o07A 304 22.99 c.66.1.17 138862 2igbA 179 24.07 1i0rA 169 24.41 b.45.1.2 61489 1f28A 297 25.07 d.117.1.1 59608 1rz1A 161 25.52 b.45.1.2 98124 1f5nA 592 28.89 a.114.1.1,c.37.1.8 19077,32152 1ev5A 264 30.11 d.117.1.1 40935 1dmgA 225 34.29 c.22.1.1 31036 1rqpA 299 35.29 b.141.1.1,c.132.1.1 97754,97755 1xm7A 195 37.03 d.159.1.8 115473 2ecuA 149 39.42 2ax4A 198 40.16 1iy8A 267 42.64 c.2.1.2 83774 1up7A 417 46.24 c.2.1.5,d.162.1.2 113374,113375 2r6vA 191 47.76 1z7xW 461 50.02 c.10.1.1 124675 2zbvA 263 51.77 2og9A 393 52.05 2vefA 314 52.39 2ahoA 414 52.57 b.43.3.1,b.44.1.1,c.37.1.8 126767,126768,126769 2ebn 289 52.88 1kk1A 410 54.20 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2zihA 347 55.62 1vctA 205 59.40 a.7.12.1,d.286.1.1 119986,119987 1vjnA 220 60.13 d.157.1.4 100825 2d5mA 190 60.84 2cw5A 255 62.10 2j73A 103 64.13 2acfA 182 64.95 c.50.1.2 126547 1tzfA 259 68.10 c.68.1.13 107476 2cl2A 298 69.17 3bs5A 106 73.13 2ptfA 233 75.47 1kgsA 225 75.52 a.4.6.1,c.23.1.1 68596,68597 1wuuA 399 76.00 d.14.1.5,d.58.26.7 114900,114901 1o4uA 285 77.49 c.1.17.1,d.41.2.1 86624,86625 1xv5A 401 77.52 2q6kA 283 77.79 1pujA 282 78.39 c.37.1.8 88294 1zk4A 251 82.76 c.2.1.2 125176 1u14A 172 83.59 c.51.4.3 107579 1zynA 202 83.92 c.47.1.2,c.47.1.2 125838,125839 2q4gW 461 87.57 c.10.1.1 139849 1tz0A 114 87.91 d.58.4.5 107463