# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 2.82e-16 b.36.1.1 60400 2ozfA 92 1.04e-15 2qg1A 92 2.26e-15 2v90A 96 4.31e-15 2he4A 90 6.06e-15 2f5yA 91 7.22e-15 b.36.1.1 133015 2ocsA 88 1.06e-14 2uzcA 88 1.30e-14 2fe5A 94 1.81e-14 b.36.1.1 133323 2iwnA 97 1.89e-14 2jikA 101 1.90e-14 2opgA 98 2.04e-14 2egoA 96 3.37e-14 2qkvA 96 3.37e-14 2q3gA 89 3.42e-14 2he2A 102 3.53e-14 1ihjA 98 3.61e-14 b.36.1.1 62382 1qavA 90 3.97e-14 b.36.1.1 24777 2fneA 117 4.55e-14 b.36.1.1 133813 2i1nA 102 4.98e-14 2fcfA 103 5.76e-14 b.36.1.1 133267 2pktA 91 5.88e-14 2gzvA 114 6.35e-14 2jilA 97 6.46e-14 2awxA 105 6.48e-14 1tp5A 119 7.99e-14 b.36.1.1 119305 2reyA 100 8.66e-14 1x45A 98 1.12e-13 b.36.1.1 121679 1qauA 112 1.23e-13 b.36.1.1 24779 1q3oA 109 1.25e-13 b.36.1.1 95700 2h2bA 107 2.24e-13 2pa1A 87 3.47e-13 1n7eA 97 4.14e-13 b.36.1.1 91691 2h3lA 103 4.39e-13 b.36.1.1 136046 3bpuA 88 5.86e-13 1kwaA 88 6.21e-13 b.36.1.1 24772 1mfgA 95 7.77e-13 b.36.1.1 79043 2iwoA 120 7.83e-13 2vphA 100 8.61e-13 1r6jA 82 8.75e-13 b.36.1.1 97151 2i04A 85 1.20e-12 2q9vA 90 1.91e-12 1wf7A 103 2.14e-12 b.36.1.1 114577 2f0aA 98 5.70e-12 b.36.1.1 132661 1nf3C 128 1.30e-11 b.36.1.1 85596 2eaqA 90 4.63e-11 1fc6A 388 6.79e-09 b.36.1.3,c.14.1.2 64738,64739 2rczA 81 8.46e-09 1y8tA 324 1.48e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 3.90e-06 1lcyA 325 1.48e-05 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 6.81e-05 b.36.1.4,b.47.1.1 112400,112401 2i6vA 87 0.001003 1k32A 1045 0.02485 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2dstA 131 8.524 3bdiA 207 8.631 2yysA 286 9.632 2j3tD 219 11.46 2ap1A 327 12.94 c.55.1.10,c.55.1.10 127108,127109 2ffqA 171 13.27 1cjwA 166 13.59 d.108.1.1 40818 1pne 140 13.63 1x3mA 415 14.26 c.55.1.2,c.55.1.2 121664,121665 2reeA 224 15.40 2rexB 197 15.49 1l3kA 196 16.42 d.58.7.1,d.58.7.1 73539,73540 1mtzA 293 19.10 c.69.1.7 79467 2gs8A 317 19.34 2cf5A 357 19.59 1lh0A 213 20.35 c.61.1.1 73896 2qdfA 335 20.70 1wv8A 73 24.08 d.304.1.1 121326 1j1iA 296 24.42 c.69.1.10 83977 1l0cA 207 25.96 d.108.1.1 73393 1i4uA 181 26.95 b.60.1.1 61732 1luzA 88 27.09 b.40.4.5 74271 1u04A 771 27.56 b.34.14.1,c.55.3.10 107539,107540 2ei9A 240 29.94 2h7aA 110 30.04 2f9lA 199 31.27 c.37.1.8 133166 3tglA 269 33.02 c.69.1.17 34733 1a62 130 33.24 2qruA 274 35.66 1a62A 130 39.12 a.140.3.1,b.40.4.5 64708,64709 1fxlA 167 39.43 d.58.7.1,d.58.7.1 39183,39184 1ek0A 170 39.58 c.37.1.8 32076 1vhxA 150 39.79 c.55.3.8 100712 1vj0A 380 40.18 b.35.1.2,c.2.1.1 100786,100787 2v8fA 140 40.23 1dmgA 225 40.60 c.22.1.1 31036 2aefA 234 41.58 2pavP 139 41.86 2dxqA 150 42.73 3bp1A 290 44.05 1azwA 313 45.88 c.69.1.7 34658 1widA 130 46.73 b.142.1.2 114667 1j1tA 233 47.10 b.29.1.18 90771 2cdqA 510 47.89 c.73.1.3,d.58.18.10,d.58.18.10 130290,130291,130292 2oaaA 249 49.05 1vh0A 161 50.33 c.116.1.3 100626 1z0jA 170 50.46 c.37.1.8 124319 1yzqA 170 50.48 c.37.1.8 124286 1r61A 207 50.88 c.8.8.1 97138 2e1zA 415 52.01 1z2aA 168 53.49 c.37.1.8 124374 1ygsA 234 54.41 b.26.1.1 23907 1s3zA 165 57.94 d.108.1.1 105250 1xqwA 293 58.85 2e3jA 356 60.09 1x3sA 195 60.30 c.37.1.8 121670 1y9kA 157 61.29 d.108.1.1 122779 2a67A 167 63.29 1pneA 139 63.36 d.110.1.1 40866 2ew1A 201 63.85 c.37.1.8 132446 2pbdP 139 65.01 1r2qA 170 67.93 c.37.1.8 96874 2bw3A 534 67.95 a.270.1.1,c.55.3.12 129317,129318 1uufA 369 68.08 b.35.1.2,c.2.1.1 100006,100007 1sjyA 159 69.87 d.113.1.1 98900 2g6bA 180 71.88 c.37.1.8 134701 1yb3A 175 72.49 d.296.1.2 122869 2btuA 346 72.74 1i2mA 216 73.30 c.37.1.8 61568 2gf9A 189 73.79 2v8pA 271 74.07 1tibA 269 75.88 c.69.1.17 34738 1tqxA 227 75.89 c.1.2.2 112614 1yioA 208 76.30 a.4.6.2,c.23.1.1 123326,123327 1m5q1 130 76.43 1q0rA 298 76.46 c.69.1.28 95508 1brwA 433 77.43 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1y37A 304 77.86 2bcgY 206 78.53 c.37.1.8 128285 2q88A 257 78.96 1l1qA 186 80.25 c.61.1.1 77653 1yqdA 366 80.49 2go9A 161 81.04 1bn7A 294 81.46 c.69.1.8 34677 1viuA 203 83.50 d.113.1.1 100771 1z08A 170 83.70 c.37.1.8 124303 2bhoA 130 84.77 2c5qA 240 84.91 1vkcA 158 86.87 d.108.1.1 113663 1cq3A 233 88.93 b.27.1.1 23923