# List of top-scoring protein chains for T0387.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2he2A 102 2.87e-09 1um7A 113 5.04e-09 b.36.1.1 99579 1rgrA 99 1.05e-08 b.36.1.1 104931 1gq5A 91 1.25e-08 b.36.1.1 76274 1g9oA 91 1.33e-08 b.36.1.1 60400 1i92A 91 1.39e-08 b.36.1.1 61990 1kefA 93 1.41e-08 b.36.1.1 72369 1gq4A 90 1.49e-08 b.36.1.1 70340 2i1nA 102 1.52e-08 2dkrA 93 1.53e-08 1iu0A 91 1.66e-08 b.36.1.1 83707 1pdrA 99 1.89e-08 b.36.1.1 24771 1zokA 93 1.96e-08 b.36.1.1 125451 2enoA 120 2.40e-08 1tp5A 119 2.66e-08 b.36.1.1 119305 2jikA 101 2.69e-08 1be9A 119 2.78e-08 b.36.1.1 24774 2jinA 102 2.90e-08 2bygA 117 3.85e-08 b.36.1.1 129480 2i0iA 85 3.89e-08 b.36.1.1 136953 2he4A 90 3.95e-08 2r4hA 112 4.09e-08 2ocsA 88 4.21e-08 2awxA 105 4.52e-08 2dm8A 116 5.09e-08 2ozfA 92 5.70e-08 2g2lA 105 5.78e-08 1d5gA 96 6.14e-08 b.36.1.1 70080 2awwA 105 6.48e-08 2awuA 105 6.66e-08 2fe5A 94 6.77e-08 b.36.1.1 133323 1wfvA 103 7.37e-08 b.36.1.1 114594 1gm1A 94 8.21e-08 b.36.1.1 70271 1vj6A 102 8.25e-08 b.36.1.1 120064 2oqsA 97 8.70e-08 1x5qA 110 1.06e-07 b.36.1.1 121717 2jilA 97 1.11e-07 1whaA 105 1.25e-07 b.36.1.1 114638 2d90A 102 1.34e-07 2fcfA 103 1.51e-07 b.36.1.1 133267 2dc2A 103 1.55e-07 2qg1A 92 1.56e-07 2fneA 117 1.57e-07 b.36.1.1 133813 2opgA 98 1.58e-07 1uhpA 107 1.59e-07 b.36.1.1 99400 1qlcA 95 1.59e-07 b.36.1.1 24776 2iwqA 123 1.65e-07 2eeiA 106 2.22e-07 1wf8A 107 2.24e-07 b.36.1.1 120967 1uezA 101 2.73e-07 b.36.1.1 99286 2djtA 104 3.07e-07 2dazA 124 3.15e-07 2fn5A 94 3.41e-07 1z87A 263 3.55e-07 1qavA 90 4.09e-07 b.36.1.1 24777 2ogpA 97 4.36e-07 2i0lA 84 4.49e-07 2vrfA 95 4.59e-07 1q7xA 108 5.28e-07 b.36.1.1 96059 1z86A 87 5.55e-07 b.36.1.1 124690 2pdzA 86 5.70e-07 b.36.1.1 24778 2eejA 96 5.74e-07 2g5mB 113 5.96e-07 2pktA 91 6.19e-07 2v90A 96 6.65e-07 1uewA 114 6.92e-07 b.36.1.1 99281 2iwoA 120 7.11e-07 1um1A 110 7.17e-07 b.36.1.1 99578 1oziA 99 8.66e-07 b.36.1.1 93845 2dmzA 129 9.25e-07 2ehrA 117 9.34e-07 2o2tA 117 1.00e-06 2edzA 114 1.10e-06 1uf1A 128 1.17e-06 b.36.1.1 99288 2iwnA 97 1.22e-06 2dluA 111 1.32e-06 1wi2A 104 1.36e-06 b.36.1.1 114659 2csjA 117 1.38e-06 b.36.1.1 130771 2v1wA 90 1.58e-06 1ueqA 123 1.84e-06 b.36.1.1 99271 2yuyA 126 2.00e-06 1t2mA 101 2.09e-06 b.36.1.1 119133 1ujuA 111 2.17e-06 b.36.1.1 99469 1vb7A 94 2.37e-06 b.36.1.1 108474 2omjA 89 2.41e-06 1q3oA 109 2.46e-06 b.36.1.1 95700 1n7eA 97 2.53e-06 b.36.1.1 91691 2eegA 94 2.54e-06 2d92A 108 2.56e-06 2q9vA 90 2.58e-06 1v5lA 103 2.59e-06 b.36.1.1 108378 1xz9A 101 2.66e-06 b.36.1.1 122471 2ainA 93 2.86e-06 1ihjA 98 3.32e-06 b.36.1.1 62382 2pa1A 87 3.50e-06 1uepA 103 4.30e-06 b.36.1.1 99270 1m5zA 91 4.58e-06 b.36.1.1 78676 2f5yA 91 4.59e-06 b.36.1.1 133015 1uitA 117 4.60e-06 b.36.1.1 99433 2db5A 128 4.93e-06 2uzcA 88 4.94e-06 2h2cA 107 5.17e-06 2h2bA 107 5.18e-06 1rgwA 85 5.51e-06 b.36.1.1 97455 1wf7A 103 5.60e-06 b.36.1.1 114577 1x5nA 114 5.82e-06 b.36.1.1 121714 1wjlA 90 5.95e-06 b.36.1.1 114701 2q3gA 89 5.99e-06 2eehA 100 6.83e-06 2h3mA 97 6.84e-06 1qavB 115 7.05e-06 b.36.1.1 24780 1b8qA 127 7.37e-06 b.36.1.1 24781 1whdA 100 8.80e-06 b.36.1.1 114641 1qauA 112 9.01e-06 b.36.1.1 24779 3b76A 118 9.36e-06 1wg6A 127 1.06e-05 b.36.1.1 114603 2dlsA 93 1.11e-05 1mfgA 95 1.25e-05 b.36.1.1 79043 1x6dA 119 1.26e-05 b.36.1.2 121739 2h3lA 103 1.45e-05 b.36.1.1 136046 2reyA 100 1.57e-05 3bpuA 88 1.67e-05 1v62A 117 1.69e-05 b.36.1.1 108390 2qbwA 195 1.69e-05 1x8sA 102 1.75e-05 b.36.1.1 114967 1x5rA 112 1.83e-05 b.36.1.1 121718 2f0aA 98 1.85e-05 b.36.1.1 132661 1rzxA 98 1.90e-05 b.36.1.1 98236 1mc7A 95 1.90e-05 b.36.1.1 91241 1i16A 130 1.94e-05 b.36.1.2 24787 1ry4A 128 2.01e-05 b.36.1.1 98085 1l6oA 95 2.03e-05 b.36.1.1 84534 2egkA 101 2.08e-05 2i04A 85 2.09e-05 2egoA 96 2.40e-05 2jweA 88 2.70e-05 2rczA 81 2.95e-05 2pntA 98 3.00e-05 2cs5A 119 3.68e-05 b.36.1.1 130747 1p1dA 196 3.88e-05 b.36.1.1,b.36.1.1 93896,93897 2vphA 100 3.88e-05 1wh1A 124 4.02e-05 b.36.1.1 114629 1w9eA 166 4.12e-05 b.36.1.1,b.36.1.1 120779,120780 2osgA 83 4.42e-05 1v5qA 122 5.99e-05 b.36.1.1 108383 1wi4A 109 6.11e-05 b.36.1.1 120973 1ujvA 96 6.26e-05 b.36.1.1 99470 1nf3C 128 6.61e-05 b.36.1.1 85596 1p1eA 101 7.43e-05 b.36.1.1 93898 2ev8A 97 0.000123 1ujdA 117 0.000139 b.36.1.1 99454 2ejyA 97 0.000157 2pkuA 87 0.000171 2gzvA 114 0.000172 1kwaA 88 0.000176 b.36.1.1 24772 2cssA 121 0.000188 b.36.1.1 130780 2edvA 96 0.000202 1va8A 113 0.000204 b.36.1.1 119903 2edpA 100 0.000249 2qktA 90 0.000254 1wfgA 131 0.000277 b.36.1.1 114581 1vaeA 111 0.000299 b.36.1.1 108466 1u3bA 185 0.000342 b.36.1.1,b.36.1.1 119508,119509 1zubA 114 0.000369 b.36.1.1 125665 2qkvA 96 0.000385 1y7nA 90 0.000394 b.36.1.1 122700 1u39A 80 0.000418 b.36.1.1 119503 1v6bA 118 0.000450 b.36.1.1 108394 2yt8A 94 0.000601 2yt7A 101 0.000681 1u37A 89 0.000725 b.36.1.1 119501 1x45A 98 0.000748 b.36.1.1 121679 1ufxA 103 0.001416 b.36.1.1 99359 1wifA 126 0.001725 b.36.1.1 114669 1r6jA 82 0.002642 b.36.1.1 97151 2e7kA 91 0.003725 1obxA 79 0.003983 b.36.1.1 86783 2eaqA 90 0.004019 2d8iA 114 0.004581 2yubA 118 0.009428 2ytwA 118 0.02085 2joaA 105 0.02200 2pzdA 113 0.03298 2p3wA 112 0.03366 1lcyA 325 0.2928 b.36.1.4,b.47.1.1 73834,73835 1ky9A 448 0.5298 b.36.1.4,b.47.1.1 73198,73199 1fc6A 388 0.8490 b.36.1.3,c.14.1.2 64738,64739 1fc9A 388 1.132 b.36.1.3,c.14.1.2 64742,64743 1te0A 318 1.143 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 1.147 b.36.1.4,b.47.1.1 105852,105853 1sozA 314 1.161 b.36.1.4,b.47.1.1 105859,105860 2hgaA 125 1.742 1y8tA 324 2.589 b.36.1.4,b.47.1.1 122763,122764 2dy0A 190 20.81 2bh4X 134 25.15 2bgvX 134 26.15 1zn8A 180 37.36 c.61.1.1 125376 2plnA 137 39.67 1mzvA 235 48.35 c.61.1.1 91502 1cotA 129 49.45 a.3.1.1 15899 1lnzA 342 50.52 b.117.1.1,c.37.1.8 78112,78113 2hqoA 123 52.49 1x6vA 630 55.81 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1ao0A 459 61.81 c.61.1.1,d.153.1.1 34049,41816 1gph1 465 62.23 1qb7A 236 64.84 c.61.1.1 34087 1mkmA 249 67.17 a.4.5.33,d.110.2.2 79242,79243 1hw3A 313 71.04 d.117.1.1 41053 1hvyA 288 71.29 d.117.1.1 41049 1hzwA 290 71.73 d.117.1.1 61464 1hw4A 355 72.04 d.117.1.1 41054 1ju6A 313 72.39 d.117.1.1 63289 1ypvA 313 73.91 2hqrA 223 79.79