# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	5.52e-14	b.36.1.1	60400
2ozfA	92	5.83e-14		
1tp5A	119	6.34e-14	b.36.1.1	119305
2he2A	102	7.07e-14		
1be9A	119	8.55e-14	b.36.1.1	24774
2v90A	96	9.10e-14		
2he4A	90	1.01e-13		
2qg1A	92	2.60e-13		
2fneA	117	2.62e-13	b.36.1.1	133813
2ocsA	88	3.11e-13		
2iwnA	97	3.36e-13		
2jilA	97	3.47e-13		
2i1nA	102	3.80e-13		
2awxA	105	4.00e-13		
2jikA	101	4.18e-13		
1n7eA	97	4.31e-13	b.36.1.1	91691
2opgA	98	4.77e-13		
2fe5A	94	5.84e-13	b.36.1.1	133323
1qavA	90	8.26e-13	b.36.1.1	24777
2f5yA	91	8.34e-13	b.36.1.1	133015
2pktA	91	9.83e-13		
2q3gA	89	1.50e-12		
1qauA	112	1.57e-12	b.36.1.1	24779
1kwaA	88	1.68e-12	b.36.1.1	24772
2iwoA	120	1.95e-12		
1q3oA	109	1.97e-12	b.36.1.1	95700
2gzvA	114	2.76e-12		
1wf7A	103	3.17e-12	b.36.1.1	114577
2qkvA	96	3.38e-12		
1ihjA	98	3.99e-12	b.36.1.1	62382
2pa1A	87	4.04e-12		
1v5lA	103	4.38e-12	b.36.1.1	108378
2fcfA	103	4.63e-12	b.36.1.1	133267
2h2bA	107	5.76e-12		
2uzcA	88	5.94e-12		
2f0aA	98	6.31e-12	b.36.1.1	132661
1l6oA	95	7.40e-12	b.36.1.1	84534
2q9vA	90	8.04e-12		
2i04A	85	8.47e-12		
2egoA	96	9.26e-12		
1x45A	98	1.21e-11	b.36.1.1	121679
2vphA	100	1.40e-11		
1r6jA	82	1.57e-11	b.36.1.1	97151
3bpuA	88	2.47e-11		
2reyA	100	2.54e-11		
2h3lA	103	4.47e-11	b.36.1.1	136046
1fc6A	388	5.32e-11	b.36.1.3,c.14.1.2	64738,64739
1mfgA	95	1.27e-10	b.36.1.1	79043
1nf3C	128	1.52e-10	b.36.1.1	85596
2rczA	81	2.59e-10		
2eaqA	90	7.64e-10		
1y8tA	324	8.99e-06	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	1.52e-05		
1lcyA	325	0.000110	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.000138	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.000933	b.36.1.4,b.47.1.1	105852,105853
2adzA	178	0.007146	b.55.1.1	126599
1k32A	1045	0.07319	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	0.2073		
2p1zA	180	2.441		
2g8mA	264	2.570		
1vchA	175	2.862	c.61.1.1	119980
1hvyA	288	3.143	d.117.1.1	41049
1qqqA	264	3.523	d.117.1.1	40931
1ha1	184	3.853		
1bkpA	278	3.990	d.117.1.1	41029
1j7xA	302	4.261	c.14.1.2	66425
2g8oA	264	4.615	d.117.1.1	134779
1ypvA	313	5.020		
1evfA	264	5.804	d.117.1.1	40932
1l3kA	196	6.236	d.58.7.1,d.58.7.1	73539,73540
2d5wA	603	8.177		
2rgqA	144	8.606		
2q6kA	283	8.701		
1f28A	297	10.35	d.117.1.1	59608
1g2qA	187	12.39	c.61.1.1	65117
2yzkA	178	13.87		
1rqpA	299	15.42	b.141.1.1,c.132.1.1	97754,97755
1dkuA	317	15.48	c.61.1.2,c.61.1.2	34118,34119
1l5jA	865	16.28	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
2hcrA	326	17.54		
1ev5A	264	18.32	d.117.1.1	40935
2zbvA	263	23.02		
1l1qA	186	23.30	c.61.1.1	77653
1c9oA	66	27.11	b.40.4.5	25325
2btuA	346	31.59		
1bd3A	243	31.97	c.61.1.1	34098
2ps1A	226	33.53		
2adcA	229	35.11	d.58.7.1,d.58.7.1	126582,126583
1qm9A	198	35.52	d.58.7.1,d.58.7.1	39207,39208
2aeeA	211	36.40	c.61.1.1	126620
1b5eA	246	36.48	d.117.1.1	41056
2cw5A	255	36.62		
2f4nA	273	39.89		
3bs5A	106	41.94		
1u9yA	284	46.60	c.61.1.2,c.61.1.2	119655,119656
2j3tD	219	51.65		
2jfrA	234	52.63		
1v9sA	208	54.19	c.61.1.1	119894
2yyhA	139	58.47		
1fxlA	167	59.72	d.58.7.1,d.58.7.1	39183,39184
1t71A	281	59.93	d.159.1.9	112283
1uc2A	481	61.93	d.261.1.1	99161
2dy0A	190	64.12		
1w30A	201	65.01	c.61.1.1	114118
2gm5A	139	65.49		
1xv5A	401	68.31		
1krhA	338	68.81	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2ax4A	198	72.82		
2epgA	487	77.85		
2blnA	305	81.38	b.46.1.1,c.65.1.1	128734,128735
2akaB	299	82.20	c.37.1.8	126914
2go9A	161	83.53		
1z2uA	150	86.82	d.20.1.1	124389
2nooA	502	87.30		
2ehjA	208	87.43		
1vjnA	220	87.73	d.157.1.4	100825