# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tp5A 119 5.76e-14 b.36.1.1 119305 1g9oA 91 5.82e-14 b.36.1.1 60400 2he2A 102 5.95e-14 2ozfA 92 6.64e-14 1be9A 119 9.29e-14 b.36.1.1 24774 2v90A 96 9.40e-14 2he4A 90 1.28e-13 2fneA 117 2.26e-13 b.36.1.1 133813 2jikA 101 2.40e-13 2qg1A 92 2.43e-13 2jilA 97 2.43e-13 2i1nA 102 2.49e-13 2ocsA 88 2.67e-13 2awxA 105 3.20e-13 2iwnA 97 3.25e-13 1n7eA 97 3.29e-13 b.36.1.1 91691 2fe5A 94 3.76e-13 b.36.1.1 133323 2opgA 98 4.31e-13 1qavA 90 5.50e-13 b.36.1.1 24777 2f5yA 91 7.85e-13 b.36.1.1 133015 2gzvA 114 8.97e-13 1qauA 112 9.11e-13 b.36.1.1 24779 2pktA 91 1.02e-12 2q3gA 89 1.16e-12 1kwaA 88 1.23e-12 b.36.1.1 24772 2qkvA 96 1.35e-12 1q3oA 109 2.26e-12 b.36.1.1 95700 1wf7A 103 2.31e-12 b.36.1.1 114577 1ihjA 98 2.42e-12 b.36.1.1 62382 2iwoA 120 2.52e-12 2q9vA 90 3.01e-12 2fcfA 103 3.70e-12 b.36.1.1 133267 2h2bA 107 4.05e-12 2pa1A 87 5.12e-12 2i04A 85 5.32e-12 1l6oA 95 5.51e-12 b.36.1.1 84534 2f0aA 98 5.78e-12 b.36.1.1 132661 2uzcA 88 6.39e-12 1x45A 98 7.44e-12 b.36.1.1 121679 2egoA 96 7.54e-12 1v5lA 103 7.60e-12 b.36.1.1 108378 2vphA 100 9.66e-12 1r6jA 82 1.58e-11 b.36.1.1 97151 2reyA 100 1.68e-11 3bpuA 88 1.70e-11 2rczA 81 2.00e-11 1fc6A 388 2.91e-11 b.36.1.3,c.14.1.2 64738,64739 2h3lA 103 3.17e-11 b.36.1.1 136046 1mfgA 95 4.87e-11 b.36.1.1 79043 1nf3C 128 1.01e-10 b.36.1.1 85596 2eaqA 90 4.84e-10 1y8tA 324 6.63e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 2.13e-05 1te0A 318 0.000136 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 0.000197 b.36.1.4,b.47.1.1 73834,73835 1sotA 320 0.001785 b.36.1.4,b.47.1.1 105852,105853 2adzA 178 0.003686 b.55.1.1 126599 1k32A 1045 0.04598 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2i6vA 87 0.3654 1j7xA 302 1.800 c.14.1.2 66425 2p1zA 180 1.827 1ha1 184 2.440 2d5wA 603 3.035 1qqqA 264 3.068 d.117.1.1 40931 2g8mA 264 4.046 1vchA 175 4.580 c.61.1.1 119980 1hvyA 288 4.715 d.117.1.1 41049 1evfA 264 5.225 d.117.1.1 40932 1bkpA 278 6.439 d.117.1.1 41029 2rgqA 144 6.533 1ypvA 313 7.373 2g8oA 264 7.662 d.117.1.1 134779 1l3kA 196 8.008 d.58.7.1,d.58.7.1 73539,73540 1g2qA 187 12.27 c.61.1.1 65117 1ev5A 264 16.09 d.117.1.1 40935 2q6kA 283 17.84 2j3tD 219 19.96 2yzkA 178 20.26 2btuA 346 21.29 1f28A 297 22.78 d.117.1.1 59608 1c9oA 66 26.41 b.40.4.5 25325 2hcrA 326 26.56 2hzcA 87 26.60 1qm9A 198 27.10 d.58.7.1,d.58.7.1 39207,39208 2ps1A 226 28.50 1l1qA 186 28.83 c.61.1.1 77653 1rqpA 299 28.92 b.141.1.1,c.132.1.1 97754,97755 1dkuA 317 30.56 c.61.1.2,c.61.1.2 34118,34119 1b5eA 246 32.66 d.117.1.1 41056 3b4dA 96 36.38 2adcA 229 40.50 d.58.7.1,d.58.7.1 126582,126583 2yyhA 139 43.27 1fsgA 233 44.33 c.61.1.1 34029 2aeeA 211 44.33 c.61.1.1 126620 1o5oA 221 45.94 c.61.1.1 92509 2zbvA 263 50.12 1z2uA 150 53.06 d.20.1.1 124389 2z1cA 75 55.01 2gebA 185 55.40 2blnA 305 56.75 b.46.1.1,c.65.1.1 128734,128735 1u9yA 284 57.41 c.61.1.2,c.61.1.2 119655,119656 3b3qE 197 58.65 2go9A 161 59.26 1fxlA 167 59.56 d.58.7.1,d.58.7.1 39183,39184 2f4nA 273 60.42 2nooA 502 61.22 2cw5A 255 63.32 1uldA 150 66.36 b.29.1.3 99545 2e3dA 302 69.44 1l5jA 865 69.50 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 2jbhA 225 70.56 1bd3A 243 70.68 c.61.1.1 34098 2dy0A 190 72.50 3bs5A 106 72.52 1w30A 201 73.09 c.61.1.1 114118 2f9dA 125 76.54 d.58.7.1 133159 1mw9X 592 76.74 e.10.1.1 91480 1zdnA 158 77.04 d.20.1.1 124943 2d9iA 96 77.98 1fdr 248 78.23 1wexA 104 83.02 d.58.7.1 114568 1y0hA 105 84.82 d.58.4.11 116303