# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tp5A 119 2.07e-14 b.36.1.1 119305 2ozfA 92 3.10e-14 1be9A 119 3.49e-14 b.36.1.1 24774 1g9oA 91 3.52e-14 b.36.1.1 60400 2he2A 102 4.01e-14 2v90A 96 5.96e-14 2he4A 90 6.81e-14 1n7eA 97 1.43e-13 b.36.1.1 91691 2jikA 101 1.82e-13 2fneA 117 1.99e-13 b.36.1.1 133813 2ocsA 88 2.08e-13 2i1nA 102 2.19e-13 2qg1A 92 2.53e-13 2jilA 97 2.64e-13 2iwnA 97 2.75e-13 2awxA 105 3.10e-13 2fe5A 94 3.72e-13 b.36.1.1 133323 2q3gA 89 4.30e-13 2opgA 98 4.71e-13 1qavA 90 5.02e-13 b.36.1.1 24777 2gzvA 114 6.21e-13 1wf7A 103 6.78e-13 b.36.1.1 114577 2f5yA 91 8.21e-13 b.36.1.1 133015 2pktA 91 9.14e-13 1qauA 112 1.18e-12 b.36.1.1 24779 1v5lA 103 1.21e-12 b.36.1.1 108378 1kwaA 88 1.34e-12 b.36.1.1 24772 1q3oA 109 1.35e-12 b.36.1.1 95700 2iwoA 120 1.63e-12 2qkvA 96 2.08e-12 2pa1A 87 2.69e-12 1ihjA 98 3.46e-12 b.36.1.1 62382 2q9vA 90 3.66e-12 2fcfA 103 3.67e-12 b.36.1.1 133267 2h2bA 107 3.74e-12 2uzcA 88 4.86e-12 1r6jA 82 4.96e-12 b.36.1.1 97151 2f0aA 98 5.37e-12 b.36.1.1 132661 2egoA 96 5.49e-12 2i04A 85 5.99e-12 1x45A 98 6.09e-12 b.36.1.1 121679 1l6oA 95 7.55e-12 b.36.1.1 84534 1fc6A 388 9.29e-12 b.36.1.3,c.14.1.2 64738,64739 2rczA 81 1.27e-11 2vphA 100 1.50e-11 2h3lA 103 1.57e-11 b.36.1.1 136046 3bpuA 88 3.06e-11 1mfgA 95 3.74e-11 b.36.1.1 79043 2reyA 100 6.23e-11 1nf3C 128 1.41e-10 b.36.1.1 85596 2eaqA 90 6.51e-10 1y8tA 324 6.16e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 8.46e-06 1lcyA 325 0.000107 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 0.000173 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 0.000655 b.36.1.4,b.47.1.1 105852,105853 1k32A 1045 0.003778 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2adzA 178 0.01859 b.55.1.1 126599 2i6vA 87 0.1473 2p1zA 180 0.6606 1j7xA 302 1.073 c.14.1.2 66425 1vchA 175 1.463 c.61.1.1 119980 2ps1A 226 1.797 2d5wA 603 2.483 2aeeA 211 3.588 c.61.1.1 126620 1g2qA 187 4.513 c.61.1.1 65117 1dkuA 317 4.603 c.61.1.2,c.61.1.2 34118,34119 1f28A 297 5.291 d.117.1.1 59608 2rgqA 144 5.714 2yzkA 178 5.820 1l3kA 196 6.202 d.58.7.1,d.58.7.1 73539,73540 1rqpA 299 6.622 b.141.1.1,c.132.1.1 97754,97755 1vraB 215 7.320 1cjbA 231 7.699 c.61.1.1 34079 1zn8A 180 7.911 c.61.1.1 125376 2hcrA 326 8.207 1hvyA 288 8.207 d.117.1.1 41049 2z1cA 75 8.294 2g8mA 264 9.110 2vefA 314 9.184 1ha1 184 9.96 1bkpA 278 10.60 d.117.1.1 41029 1u9yA 284 10.61 c.61.1.2,c.61.1.2 119655,119656 2gebA 185 11.45 2dy0A 190 11.91 2q6kA 283 12.35 2j3tD 219 12.50 2g8oA 264 12.85 d.117.1.1 134779 1l1qA 186 13.62 c.61.1.1 77653 2zbvA 263 14.40 1aj2A 282 14.71 c.1.21.1 29665 1fsgA 233 14.75 c.61.1.1 34029 1aj2 282 14.99 1bd3A 243 15.14 c.61.1.1 34098 1ypvA 313 15.19 1o4uA 285 15.64 c.1.17.1,d.41.2.1 86624,86625 1o5oA 221 16.64 c.61.1.1 92509 1qqqA 264 16.78 d.117.1.1 40931 1krhA 338 17.31 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 2jbhA 225 17.60 2f4nA 273 18.42 1evfA 264 19.74 d.117.1.1 40932 1vdmA 153 20.20 c.61.1.1 119994 1z7gA 217 20.73 c.61.1.1 124624 2cw5A 255 22.01 2adcA 229 22.09 d.58.7.1,d.58.7.1 126582,126583 1s98A 107 23.36 b.124.1.1 105377 1j7jA 178 25.26 c.61.1.1 84131 1wd5A 208 25.51 c.61.1.1 114524 1r94A 118 26.28 b.124.1.1 97251 1l5jA 865 26.62 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 2e3dA 302 26.87 1v9sA 208 31.08 c.61.1.1 119894 1hgxA 183 31.77 c.61.1.1 34027 1i0lA 221 33.59 c.61.1.1 71096 1ir6A 424 35.05 c.107.1.2 71342 2bekA 257 36.82 1t6t1 118 41.77 2gc1A 188 42.06 b.82.1.7 134928 1xm7A 195 43.53 d.159.1.8 115473 2yyhA 139 43.84 2pqmA 343 46.19 2aefA 234 47.41 1vctA 205 48.20 a.7.12.1,d.286.1.1 119986,119987 1xttA 216 52.31 c.61.1.1 122300 1s8nA 205 53.87 c.23.1.1 105374 1fxlA 167 54.18 d.58.7.1,d.58.7.1 39183,39184 1tx2A 297 54.66 c.1.21.1 107420 2vgaA 207 55.79 1nwbA 124 56.84 b.124.1.1 86296 1at0 145 56.92 2ax4A 198 57.76 2btuA 346 59.23 1c9oA 66 60.94 b.40.4.5 25325 2e55A 208 61.03 1at0A 145 63.50 b.86.1.1 28374 1zh5A 195 64.20 a.4.5.46,d.58.7.1 125073,125074 1ad1A 266 66.43 c.1.21.1 29668 2o38A 120 66.90 2ehjA 208 68.36 3bs5A 106 68.61 1cukA 203 70.36 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 2q40A 367 73.18 e.50.1.1 139814 2otmA 154 73.58 1vjnA 220 73.83 d.157.1.4 100825 1ev5A 264 74.62 d.117.1.1 40935 1qm9A 198 74.73 d.58.7.1,d.58.7.1 39207,39208 1mi8A 158 76.43 b.86.1.2 91279 1tc1A 220 76.84 c.61.1.1 34083 2j73A 103 78.70 2d9iA 96 78.98 1gutA 68 80.71 b.40.6.1 65576 2h1rA 299 82.02 2a6cA 83 82.45 a.35.1.13 126236 1xk5A 204 84.08 2dztA 248 84.32 2bgiA 272 84.49 2jfrA 234 84.81 1mw9X 592 85.45 e.10.1.1 91480 1yioA 208 85.48 a.4.6.2,c.23.1.1 123326,123327 1l7bA 92 86.38 c.15.1.2 91053 2fliA 220 86.70 c.1.2.2 133714 2yx0A 342 87.09 2chcA 170 88.82