# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 6.42e-13 b.36.1.1 60400 2ozfA 92 8.08e-13 1tp5A 119 8.68e-13 b.36.1.1 119305 2he2A 102 1.05e-12 1be9A 119 1.13e-12 b.36.1.1 24774 2v90A 96 1.37e-12 2he4A 90 1.54e-12 2qg1A 92 2.37e-12 2fneA 117 3.08e-12 b.36.1.1 133813 2ocsA 88 3.86e-12 2iwnA 97 4.30e-12 1n7eA 97 5.03e-12 b.36.1.1 91691 2i1nA 102 5.26e-12 2opgA 98 5.88e-12 2fe5A 94 7.62e-12 b.36.1.1 133323 2jikA 101 7.74e-12 2awxA 105 8.48e-12 2f5yA 91 9.48e-12 b.36.1.1 133015 2jilA 97 1.06e-11 2pktA 91 1.31e-11 1qavA 90 1.68e-11 b.36.1.1 24777 1qauA 112 1.69e-11 b.36.1.1 24779 2q3gA 89 1.78e-11 1kwaA 88 2.38e-11 b.36.1.1 24772 2gzvA 114 2.40e-11 1wf7A 103 3.04e-11 b.36.1.1 114577 2qkvA 96 3.19e-11 1q3oA 109 3.28e-11 b.36.1.1 95700 2pa1A 87 3.97e-11 2iwoA 120 4.49e-11 2fcfA 103 4.92e-11 b.36.1.1 133267 1v5lA 103 5.39e-11 b.36.1.1 108378 1l6oA 95 7.29e-11 b.36.1.1 84534 2egoA 96 7.32e-11 2h2bA 107 7.68e-11 2f0aA 98 8.14e-11 b.36.1.1 132661 2i04A 85 8.86e-11 2uzcA 88 9.76e-11 2vphA 100 1.01e-10 2q9vA 90 1.05e-10 1ihjA 98 1.06e-10 b.36.1.1 62382 1r6jA 82 1.25e-10 b.36.1.1 97151 3bpuA 88 1.79e-10 1fc6A 388 1.84e-10 b.36.1.3,c.14.1.2 64738,64739 1x45A 98 2.30e-10 b.36.1.1 121679 2reyA 100 3.48e-10 2h3lA 103 5.91e-10 b.36.1.1 136046 2rczA 81 1.30e-09 1mfgA 95 1.56e-09 b.36.1.1 79043 1nf3C 128 3.60e-09 b.36.1.1 85596 2eaqA 90 5.50e-09 1y8tA 324 2.67e-05 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 3.24e-05 1lcyA 325 0.000185 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 0.000794 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 0.001838 b.36.1.4,b.47.1.1 105852,105853 2adzA 178 0.001866 b.55.1.1 126599 1k32A 1045 0.07654 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.3140 c.14.1.2 66425 1vchA 175 1.366 c.61.1.1 119980 2i6vA 87 1.412 2p1zA 180 1.615 2g8mA 264 2.466 2g8oA 264 3.327 d.117.1.1 134779 2d5wA 603 3.704 1qqqA 264 4.166 d.117.1.1 40931 2rgqA 144 4.464 1hvyA 288 4.465 d.117.1.1 41049 1ypvA 313 4.707 1bkpA 278 6.831 d.117.1.1 41029 2yzkA 178 7.244 1evfA 264 7.435 d.117.1.1 40932 1f28A 297 9.947 d.117.1.1 59608 1dkuA 317 10.41 c.61.1.2,c.61.1.2 34118,34119 2hcrA 326 12.02 2aeeA 211 13.78 c.61.1.1 126620 1ha1 184 14.78 1t71A 281 16.36 d.159.1.9 112283 1ev5A 264 17.55 d.117.1.1 40935 1u9yA 284 17.95 c.61.1.2,c.61.1.2 119655,119656 1bd3A 243 19.71 c.61.1.1 34098 1l5jA 865 21.35 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1g2qA 187 22.52 c.61.1.1 65117 1l1qA 186 23.50 c.61.1.1 77653 2ps1A 226 24.87 2q6kA 283 25.62 1z2uA 150 27.04 d.20.1.1 124389 2e3dA 302 35.90 1rqpA 299 36.33 b.141.1.1,c.132.1.1 97754,97755 1c9oA 66 36.80 b.40.4.5 25325 2gebA 185 42.16 2j3tD 219 43.05 1zdnA 158 44.17 d.20.1.1 124943 1o5oA 221 45.31 c.61.1.1 92509 2hzcA 87 46.16 2nooA 502 46.23 1s98A 107 47.72 b.124.1.1 105377 1l3kA 196 48.80 d.58.7.1,d.58.7.1 73539,73540 1vjnA 220 48.86 d.157.1.4 100825 2dy0A 190 50.05 2dkaA 544 50.12 2blnA 305 51.45 b.46.1.1,c.65.1.1 128734,128735 1zn8A 180 52.05 c.61.1.1 125376 1b5eA 246 53.75 d.117.1.1 41056 2ax4A 198 55.82 2chcA 170 55.84 2go9A 161 56.36 2yx0A 342 56.58 1mw9X 592 63.67 e.10.1.1 91480 2z1cA 75 65.64 2o7iA 592 66.49 2yyhA 139 66.66 2orwA 184 67.01 1r94A 118 69.23 b.124.1.1 97251 1vr5A 547 70.75 c.94.1.1 120437 1wd5A 208 71.90 c.61.1.1 114524 1zcoA 262 72.34 2zbvA 263 73.20 1aj2 282 76.22 1h5rA 293 76.79 c.68.1.6 65623 1x23A 155 78.94 d.20.1.1 121615 1jatA 155 79.50 d.20.1.1 62818 2f4nA 273 80.16 1uldA 150 80.16 b.29.1.3 99545 2cw5A 255 83.05 2akaB 299 85.30 c.37.1.8 126914 1j7jA 178 85.34 c.61.1.1 84131 2btuA 346 86.89 1lvwA 295 89.11 c.68.1.6 84723