# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	2.79e-12	b.36.1.1	60400
2ozfA	92	3.14e-12		
1tp5A	119	3.38e-12	b.36.1.1	119305
2he2A	102	3.55e-12		
1be9A	119	4.63e-12	b.36.1.1	24774
2he4A	90	5.56e-12		
2v90A	96	5.66e-12		
2qg1A	92	8.17e-12		
2fneA	117	9.84e-12	b.36.1.1	133813
2ocsA	88	1.32e-11		
2i1nA	102	1.47e-11		
2iwnA	97	1.52e-11		
1n7eA	97	1.65e-11	b.36.1.1	91691
2jikA	101	1.75e-11		
2opgA	98	1.99e-11		
2awxA	105	2.01e-11		
2fe5A	94	2.07e-11	b.36.1.1	133323
2jilA	97	2.46e-11		
2f5yA	91	2.77e-11	b.36.1.1	133015
1qavA	90	4.01e-11	b.36.1.1	24777
1qauA	112	5.30e-11	b.36.1.1	24779
2pktA	91	5.49e-11		
2q3gA	89	5.66e-11		
1kwaA	88	6.17e-11	b.36.1.1	24772
2gzvA	114	6.65e-11		
1q3oA	109	8.62e-11	b.36.1.1	95700
2qkvA	96	1.00e-10		
1wf7A	103	1.06e-10	b.36.1.1	114577
2iwoA	120	1.06e-10		
2fcfA	103	1.07e-10	b.36.1.1	133267
2pa1A	87	1.22e-10		
1l6oA	95	1.68e-10	b.36.1.1	84534
1v5lA	103	1.91e-10	b.36.1.1	108378
1ihjA	98	2.03e-10	b.36.1.1	62382
2h2bA	107	2.04e-10		
2f0aA	98	2.08e-10	b.36.1.1	132661
2i04A	85	2.39e-10		
2uzcA	88	2.58e-10		
2q9vA	90	2.59e-10		
2egoA	96	3.17e-10		
1x45A	98	4.38e-10	b.36.1.1	121679
2vphA	100	4.45e-10		
1r6jA	82	4.71e-10	b.36.1.1	97151
1fc6A	388	5.88e-10	b.36.1.3,c.14.1.2	64738,64739
3bpuA	88	6.24e-10		
2reyA	100	8.37e-10		
2h3lA	103	1.49e-09	b.36.1.1	136046
2rczA	81	2.51e-09		
1mfgA	95	3.19e-09	b.36.1.1	79043
1nf3C	128	8.66e-09	b.36.1.1	85596
2eaqA	90	1.68e-08		
2p3wA	112	8.44e-05		
1y8tA	324	8.53e-05	b.36.1.4,b.47.1.1	122763,122764
1lcyA	325	0.000300	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.001426	b.36.1.4,b.47.1.1	112400,112401
2adzA	178	0.001799	b.55.1.1	126599
1sotA	320	0.004080	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.1395	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.3608	c.14.1.2	66425
2p1zA	180	1.409		
1vchA	175	2.401	c.61.1.1	119980
2i6vA	87	3.046		
2d5wA	603	5.177		
2rgqA	144	7.549		
1ypvA	313	7.612		
2yzkA	178	7.662		
1hvyA	288	7.807	d.117.1.1	41049
2g8mA	264	9.359		
2g8oA	264	9.717	d.117.1.1	134779
1qqqA	264	10.02	d.117.1.1	40931
1dkuA	317	12.54	c.61.1.2,c.61.1.2	34118,34119
2hcrA	326	13.38		
2ps1A	226	13.55		
2aeeA	211	14.42	c.61.1.1	126620
1bkpA	278	14.52	d.117.1.1	41029
1f28A	297	15.45	d.117.1.1	59608
1evfA	264	17.39	d.117.1.1	40932
1l1qA	186	18.03	c.61.1.1	77653
1u9yA	284	18.06	c.61.1.2,c.61.1.2	119655,119656
1g2qA	187	18.76	c.61.1.1	65117
1l5jA	865	22.59	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1ha1	184	28.94		
1z2uA	150	29.84	d.20.1.1	124389
1bd3A	243	30.54	c.61.1.1	34098
2btuA	346	37.94		
2e3dA	302	38.66		
2dy0A	190	40.91		
2q6kA	283	42.13		
1zdnA	158	42.20	d.20.1.1	124943
1zn8A	180	43.28	c.61.1.1	125376
2gebA	185	44.19		
1c9oA	66	45.17	b.40.4.5	25325
1ev5A	264	46.27	d.117.1.1	40935
1t71A	281	47.59	d.159.1.9	112283
2yx0A	342	48.21		
1rqpA	299	48.99	b.141.1.1,c.132.1.1	97754,97755
2blnA	305	51.93	b.46.1.1,c.65.1.1	128734,128735
1vjnA	220	53.98	d.157.1.4	100825
2hzcA	87	54.42		
2nooA	502	54.43		
2dkaA	544	55.66		
2go9A	161	56.19		
1wd5A	208	64.86	c.61.1.1	114524
2jbhA	225	65.21		
3b3qE	197	66.27		
2orwA	184	68.58		
1qm9A	198	72.47	d.58.7.1,d.58.7.1	39207,39208
2j3tD	219	78.57		
2j73A	103	79.11		
1b5eA	246	79.24	d.117.1.1	41056
1fsgA	233	81.92	c.61.1.1	34029
1jatA	155	82.23	d.20.1.1	62818
2o7iA	592	82.56		
2ax4A	198	82.68		
2z2uA	311	83.78		
1w30A	201	84.04	c.61.1.1	114118
1x23A	155	85.78	d.20.1.1	121615
1vr5A	547	86.89	c.94.1.1	120437
1zcoA	262	87.82		
3bs5A	106	89.37		
1j7jA	178	89.39	c.61.1.1	84131
1o5oA	221	89.84	c.61.1.1	92509