# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	1.83e-12	b.36.1.1	60400
2ozfA	92	1.95e-12		
2he2A	102	2.05e-12		
1tp5A	119	2.07e-12	b.36.1.1	119305
1be9A	119	2.92e-12	b.36.1.1	24774
2v90A	96	3.75e-12		
2he4A	90	4.18e-12		
2qg1A	92	4.54e-12		
2fneA	117	6.26e-12	b.36.1.1	133813
2iwnA	97	9.01e-12		
1n7eA	97	9.58e-12	b.36.1.1	91691
2ocsA	88	9.92e-12		
2i1nA	102	1.01e-11		
2opgA	98	1.33e-11		
2jilA	97	1.38e-11		
2jikA	101	1.40e-11		
2awxA	105	1.40e-11		
2fe5A	94	1.41e-11	b.36.1.1	133323
2f5yA	91	2.12e-11	b.36.1.1	133015
1qavA	90	2.49e-11	b.36.1.1	24777
1qauA	112	3.24e-11	b.36.1.1	24779
2q3gA	89	3.68e-11		
1kwaA	88	3.70e-11	b.36.1.1	24772
2pktA	91	3.77e-11		
2gzvA	114	4.15e-11		
2qkvA	96	5.20e-11		
1wf7A	103	5.79e-11	b.36.1.1	114577
1q3oA	109	6.65e-11	b.36.1.1	95700
2iwoA	120	6.74e-11		
2fcfA	103	6.87e-11	b.36.1.1	133267
2pa1A	87	8.95e-11		
1l6oA	95	1.11e-10	b.36.1.1	84534
1v5lA	103	1.20e-10	b.36.1.1	108378
1ihjA	98	1.25e-10	b.36.1.1	62382
2f0aA	98	1.28e-10	b.36.1.1	132661
2h2bA	107	1.52e-10		
2q9vA	90	1.59e-10		
2i04A	85	1.83e-10		
2uzcA	88	2.03e-10		
2egoA	96	2.13e-10		
1r6jA	82	2.75e-10	b.36.1.1	97151
2vphA	100	2.83e-10		
1x45A	98	3.05e-10	b.36.1.1	121679
1fc6A	388	3.99e-10	b.36.1.3,c.14.1.2	64738,64739
3bpuA	88	4.07e-10		
2reyA	100	5.22e-10		
2h3lA	103	9.66e-10	b.36.1.1	136046
2rczA	81	1.31e-09		
1mfgA	95	2.50e-09	b.36.1.1	79043
1nf3C	128	4.04e-09	b.36.1.1	85596
2eaqA	90	1.01e-08		
1y8tA	324	6.92e-05	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	6.98e-05		
1lcyA	325	0.000266	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.001321	b.36.1.4,b.47.1.1	112400,112401
2adzA	178	0.001631	b.55.1.1	126599
1sotA	320	0.003274	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.1373	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.6488	c.14.1.2	66425
2p1zA	180	1.789		
1vchA	175	2.285	c.61.1.1	119980
2d5wA	603	3.597		
2i6vA	87	3.836		
1qqqA	264	6.812	d.117.1.1	40931
2g8mA	264	7.198		
2g8oA	264	7.780	d.117.1.1	134779
2rgqA	144	8.311		
2yzkA	178	8.808		
1evfA	264	9.776	d.117.1.1	40932
1ypvA	313	10.18		
1hvyA	288	10.35	d.117.1.1	41049
1dkuA	317	14.37	c.61.1.2,c.61.1.2	34118,34119
1bkpA	278	15.06	d.117.1.1	41029
1f28A	297	15.36	d.117.1.1	59608
1ha1	184	18.34		
2hcrA	326	20.37		
1l5jA	865	22.41	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1g2qA	187	22.96	c.61.1.1	65117
2ps1A	226	23.60		
1u9yA	284	24.64	c.61.1.2,c.61.1.2	119655,119656
2aeeA	211	25.88	c.61.1.1	126620
1ev5A	264	26.08	d.117.1.1	40935
1l1qA	186	27.11	c.61.1.1	77653
1z2uA	150	35.21	d.20.1.1	124389
1bd3A	243	35.84	c.61.1.1	34098
1t71A	281	37.15	d.159.1.9	112283
2yx0A	342	41.01		
2nooA	502	41.68		
2e3dA	302	42.11		
2q6kA	283	43.93		
2blnA	305	47.26	b.46.1.1,c.65.1.1	128734,128735
1zdnA	158	47.28	d.20.1.1	124943
1rqpA	299	48.17	b.141.1.1,c.132.1.1	97754,97755
2hzcA	87	50.88		
2dy0A	190	50.91		
1vr5A	547	53.34	c.94.1.1	120437
2o7iA	592	53.57		
1c9oA	66	54.61	b.40.4.5	25325
2btuA	346	55.62		
2go9A	161	57.33		
2ax4A	198	59.70		
1vjnA	220	63.99	d.157.1.4	100825
2gebA	185	65.54		
2j3tD	219	67.81		
2orwA	184	67.85		
2dkaA	544	72.20		
1h5rA	293	78.22	c.68.1.6	65623
1jatA	155	79.33	d.20.1.1	62818
2j73A	103	79.71		
1qm9A	198	80.95	d.58.7.1,d.58.7.1	39207,39208
1b5eA	246	87.25	d.117.1.1	41056