# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	3.67e-12	b.36.1.1	60400
2ozfA	92	4.43e-12		
2v90A	96	1.09e-11		
2qg1A	92	1.14e-11		
2he2A	102	1.24e-11		
2he4A	90	1.31e-11		
1tp5A	119	2.34e-11	b.36.1.1	119305
1be9A	119	2.50e-11	b.36.1.1	24774
2awxA	105	3.13e-11		
2ocsA	88	3.17e-11		
2fneA	117	3.41e-11	b.36.1.1	133813
2iwnA	97	3.42e-11		
2fe5A	94	3.84e-11	b.36.1.1	133323
2i1nA	102	4.06e-11		
1n7eA	97	4.29e-11	b.36.1.1	91691
2jikA	101	4.60e-11		
2jilA	97	4.70e-11		
2opgA	98	4.86e-11		
2f5yA	91	5.25e-11	b.36.1.1	133015
1qauA	112	7.45e-11	b.36.1.1	24779
1qavA	90	8.19e-11	b.36.1.1	24777
2gzvA	114	8.93e-11		
2q3gA	89	1.17e-10		
2qkvA	96	1.26e-10		
1q3oA	109	1.34e-10	b.36.1.1	95700
2fcfA	103	1.41e-10	b.36.1.1	133267
2pktA	91	1.57e-10		
2f0aA	98	1.79e-10	b.36.1.1	132661
1wf7A	103	1.88e-10	b.36.1.1	114577
2h2bA	107	2.17e-10		
1ihjA	98	2.27e-10	b.36.1.1	62382
1l6oA	95	2.31e-10	b.36.1.1	84534
2q9vA	90	2.60e-10		
1kwaA	88	2.77e-10	b.36.1.1	24772
1v5lA	103	2.95e-10	b.36.1.1	108378
1x45A	98	2.99e-10	b.36.1.1	121679
2i04A	85	3.91e-10		
2egoA	96	4.29e-10		
2iwoA	120	4.38e-10		
2reyA	100	5.29e-10		
2pa1A	87	5.65e-10		
2uzcA	88	5.76e-10		
3bpuA	88	6.93e-10		
2vphA	100	7.65e-10		
1r6jA	82	9.67e-10	b.36.1.1	97151
2h3lA	103	1.40e-09	b.36.1.1	136046
1mfgA	95	1.64e-09	b.36.1.1	79043
1fc6A	388	1.44e-08	b.36.1.3,c.14.1.2	64738,64739
1nf3C	128	2.08e-08	b.36.1.1	85596
2rczA	81	3.25e-08		
2eaqA	90	4.44e-08		
2p3wA	112	0.000150		
1y8tA	324	0.000191	b.36.1.4,b.47.1.1	122763,122764
1lcyA	325	0.000626	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.001682	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.001764	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.03209	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2adzA	178	0.05964	b.55.1.1	126599
2i6vA	87	1.676		
1j7xA	302	8.884	c.14.1.2	66425
2p1zA	180	13.24		
2btuA	346	26.67		
1ypvA	313	29.60		
2j3tD	219	35.02		
2d9iA	96	38.35		
1vchA	175	38.44	c.61.1.1	119980
2j73A	103	42.33		
2d5wA	603	45.93		
2ps1A	226	50.31		
2gebA	185	53.48		
1qqqA	264	65.19	d.117.1.1	40931
1ha1	184	65.74		
1hvyA	288	72.20	d.117.1.1	41049
2d59A	144	72.77	c.2.1.8	131266
1f28A	297	73.72	d.117.1.1	59608
1o4uA	285	76.61	c.1.17.1,d.41.2.1	86624,86625
1g2qA	187	77.06	c.61.1.1	65117
2g8mA	264	77.86		
2yzkA	178	79.10		
2cmdA	312	81.29	c.2.1.5,d.162.1.1	30135,42102
1ypxA	375	82.61		
2dkaA	544	83.00		
2ax4A	198	83.42		
1j7jA	178	86.81	c.61.1.1	84131