# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2he2A 102 7.98e-13 1g9oA 91 9.95e-13 b.36.1.1 60400 2ozfA 92 1.34e-12 1tp5A 119 1.34e-12 b.36.1.1 119305 2v90A 96 2.20e-12 2jilA 97 2.61e-12 1be9A 119 2.75e-12 b.36.1.1 24774 2he4A 90 3.07e-12 2qg1A 92 4.41e-12 2iwoA 120 5.62e-12 2ocsA 88 5.79e-12 2iwnA 97 7.31e-12 2i1nA 102 9.08e-12 2awxA 105 9.53e-12 1n7eA 97 1.01e-11 b.36.1.1 91691 1qavA 90 1.05e-11 b.36.1.1 24777 2jikA 101 1.13e-11 2pktA 91 1.16e-11 2opgA 98 1.17e-11 1kwaA 88 1.28e-11 b.36.1.1 24772 2fe5A 94 1.37e-11 b.36.1.1 133323 2f5yA 91 1.64e-11 b.36.1.1 133015 1wf7A 103 1.71e-11 b.36.1.1 114577 2q3gA 89 1.86e-11 1qauA 112 2.88e-11 b.36.1.1 24779 2gzvA 114 3.11e-11 2fneA 117 3.16e-11 b.36.1.1 133813 1q3oA 109 3.38e-11 b.36.1.1 95700 2qkvA 96 4.52e-11 2pa1A 87 6.05e-11 2fcfA 103 6.61e-11 b.36.1.1 133267 1ihjA 98 7.61e-11 b.36.1.1 62382 2uzcA 88 9.30e-11 2q9vA 90 1.07e-10 2h2bA 107 1.09e-10 2egoA 96 1.21e-10 1v5lA 103 1.37e-10 b.36.1.1 108378 2vphA 100 1.41e-10 2i04A 85 1.46e-10 1l6oA 95 1.47e-10 b.36.1.1 84534 1r6jA 82 2.15e-10 b.36.1.1 97151 2f0aA 98 2.72e-10 b.36.1.1 132661 3bpuA 88 3.43e-10 1x45A 98 3.56e-10 b.36.1.1 121679 2reyA 100 4.35e-10 2h3lA 103 6.20e-10 b.36.1.1 136046 1nf3C 128 1.16e-09 b.36.1.1 85596 1mfgA 95 1.20e-09 b.36.1.1 79043 2rczA 81 1.28e-09 2eaqA 90 3.31e-09 1fc6A 388 2.22e-07 b.36.1.3,c.14.1.2 64738,64739 2p3wA 112 8.59e-05 1lcyA 325 0.000462 b.36.1.4,b.47.1.1 73834,73835 2adzA 178 0.002831 b.55.1.1 126599 1te0A 318 0.05402 b.36.1.4,b.47.1.1 112400,112401 1y8tA 324 0.05902 b.36.1.4,b.47.1.1 122763,122764 2p1zA 180 0.9769 1j7xA 302 1.263 c.14.1.2 66425 2i6vA 87 1.288 1vchA 175 1.692 c.61.1.1 119980 1byiA 224 2.698 c.37.1.10 32199 2aeeA 211 2.879 c.61.1.1 126620 1ha1 184 5.208 1l1qA 186 5.794 c.61.1.1 77653 1yp2A 451 8.457 b.81.1.4,c.68.1.6 123798,123799 2yzkA 178 8.794 2ps1A 226 8.850 1sotA 320 8.928 b.36.1.4,b.47.1.1 105852,105853 1g2qA 187 9.031 c.61.1.1 65117 1l3kA 196 9.596 d.58.7.1,d.58.7.1 73539,73540 3bpkA 206 9.685 2rgqA 144 10.69 1qr6A 584 10.92 c.2.1.7,c.58.1.3 30293,33941 1l5jA 865 10.99 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 2d1gA 498 13.50 1zn8A 180 13.58 c.61.1.1 125376 1b5eA 246 13.81 d.117.1.1 41056 2epgA 487 15.00 1gzwA 134 15.73 b.29.1.3 90535 1fjmA 330 16.17 d.159.1.3 42082 2dkaA 544 16.62 2akaB 299 17.58 c.37.1.8 126914 1vf8A 377 18.13 c.1.8.5,d.26.3.1 120029,120030 3b3qE 197 19.65 2dy0A 190 21.61 2ganA 190 22.33 d.108.1.1 134889 2o7iA 592 24.41 1j7jA 178 25.28 c.61.1.1 84131 2yx0A 342 25.51 1rqpA 299 27.15 b.141.1.1,c.132.1.1 97754,97755 2gebA 185 27.34 2q40A 367 27.35 e.50.1.1 139814 1a6cA 513 29.76 b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 2pgeA 377 33.40 2dx0A 138 34.56 2ci9A 102 34.76 1qs0A 407 36.08 c.36.1.11 31829 1dkuA 317 36.62 c.61.1.2,c.61.1.2 34118,34119 1p0kA 349 36.78 c.1.4.1 87648 1qhxA 178 36.92 c.37.1.3 31936 1t71A 281 37.14 d.159.1.9 112283 2hkjA 469 38.55 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 3b5mA 205 40.05 2grvA 621 40.58 1lam 484 40.76 1vkhA 273 41.13 c.69.1.32 108662 2vr4A 846 41.13 1qwgA 251 42.29 c.1.27.1 96473 1jc4A 148 42.83 d.32.1.4 62863 2vesA 299 43.54 2f4nA 273 45.23 1fsgA 233 45.82 c.61.1.1 34029 1xrsA 516 47.14 c.1.19.4 115883 1c9oA 66 48.11 b.40.4.5 25325 2gj2A 85 48.59 1se8A 301 49.09 b.40.4.3 105448 1uqwA 509 49.90 c.94.1.1 99799 1amxA 180 50.15 b.2.3.1 22410 2zbvA 263 50.94 2j3tD 219 53.09 1y0bA 197 54.43 c.61.1.1 122476 2orwA 184 54.57 2adbA 148 57.20 d.58.7.1 126581 1fohA 664 57.41 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1z9pA 155 58.06 1xccA 220 58.22 c.47.1.10 115113 2jbhA 225 59.90 1wkyA 464 61.58 b.18.1.31,c.1.8.3 120992,120993 2blnA 305 62.66 b.46.1.1,c.65.1.1 128734,128735 1qorA 327 65.09 b.35.1.2,c.2.1.1 24766,29782 2qcvA 332 65.59 2e3dA 302 66.45 1l2uA 245 66.49 c.1.2.3 73516 2e87A 357 66.73 1oqvA 192 66.78 d.24.1.2 87320 1jalA 363 68.65 c.37.1.8,d.15.10.2 84138,84139 1vjnA 220 68.90 d.157.1.4 100825 2ha9A 446 71.13 3tmkA 216 73.09 c.37.1.1 31920 2ze0A 555 73.40 1pieA 419 74.80 d.14.1.5,d.58.26.7 94706,94707 1fukA 165 76.34 c.37.1.19 32409 1w30A 201 77.16 c.61.1.1 114118 1u9yA 284 77.31 c.61.1.2,c.61.1.2 119655,119656 1c96A 753 77.58 c.8.2.1,c.83.1.1 30727,35403 1juhA 350 79.28 b.82.1.5 71884 1jvbA 347 80.58 b.35.1.2,c.2.1.1 77181,77182 1hkkA 364 80.76 c.1.8.5,d.26.3.1 90634,90635 2z1cA 75 82.80 2ywuA 181 85.31 2cmdA 312 86.71 c.2.1.5,d.162.1.1 30135,42102 2nt0A 497 87.07 b.71.1.2,c.1.8.3 138561,138562 3b9gA 328 87.14 2hjhA 354 87.84 1vdmA 153 87.90 c.61.1.1 119994 2qu8A 228 88.53 2c0hA 353 88.71 c.1.8.3 129594 2g1pA 278 88.93