# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ozfA	92	7.59e-12		
1g9oA	91	7.71e-12	b.36.1.1	60400
1tp5A	119	8.13e-12	b.36.1.1	119305
2he2A	102	8.80e-12		
1be9A	119	9.84e-12	b.36.1.1	24774
2v90A	96	1.01e-11		
2he4A	90	1.45e-11		
2qg1A	92	2.15e-11		
2fneA	117	3.41e-11	b.36.1.1	133813
2ocsA	88	3.43e-11		
2i1nA	102	3.48e-11		
2iwnA	97	3.77e-11		
2jikA	101	4.85e-11		
2awxA	105	4.89e-11		
2opgA	98	5.68e-11		
2jilA	97	5.92e-11		
1n7eA	97	6.02e-11	b.36.1.1	91691
2fe5A	94	6.49e-11	b.36.1.1	133323
2f5yA	91	8.34e-11	b.36.1.1	133015
2pktA	91	9.98e-11		
2q3gA	89	1.13e-10		
1qauA	112	1.15e-10	b.36.1.1	24779
1kwaA	88	1.52e-10	b.36.1.1	24772
1qavA	90	1.52e-10	b.36.1.1	24777
2qkvA	96	1.72e-10		
1q3oA	109	1.73e-10	b.36.1.1	95700
2gzvA	114	2.41e-10		
2iwoA	120	2.65e-10		
1wf7A	103	2.92e-10	b.36.1.1	114577
2h2bA	107	3.40e-10		
2fcfA	103	3.45e-10	b.36.1.1	133267
1ihjA	98	4.18e-10	b.36.1.1	62382
2f0aA	98	4.27e-10	b.36.1.1	132661
2pa1A	87	4.65e-10		
2egoA	96	4.87e-10		
1l6oA	95	5.40e-10	b.36.1.1	84534
2q9vA	90	6.33e-10		
1v5lA	103	6.70e-10	b.36.1.1	108378
2uzcA	88	6.86e-10		
2vphA	100	7.92e-10		
2i04A	85	9.33e-10		
1r6jA	82	9.63e-10	b.36.1.1	97151
3bpuA	88	1.28e-09		
1x45A	98	1.29e-09	b.36.1.1	121679
1fc6A	388	1.38e-09	b.36.1.3,c.14.1.2	64738,64739
2reyA	100	1.39e-09		
2h3lA	103	2.53e-09	b.36.1.1	136046
1mfgA	95	4.72e-09	b.36.1.1	79043
2rczA	81	6.99e-09		
1nf3C	128	9.07e-09	b.36.1.1	85596
2eaqA	90	2.90e-08		
1y8tA	324	0.000137	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	0.000149		
1lcyA	325	0.001946	b.36.1.4,b.47.1.1	73834,73835
2adzA	178	0.002498	b.55.1.1	126599
1te0A	318	0.002688	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.007951	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.1093	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.5278	c.14.1.2	66425
2p1zA	180	0.9117		
1vchA	175	3.093	c.61.1.1	119980
2i6vA	87	3.735		
2g8mA	264	5.393		
2d5wA	603	6.616		
1qqqA	264	6.676	d.117.1.1	40931
2yzkA	178	7.373		
1hvyA	288	7.746	d.117.1.1	41049
2rgqA	144	8.363		
2aeeA	211	9.388	c.61.1.1	126620
1ypvA	313	9.391		
1evfA	264	9.461	d.117.1.1	40932
2g8oA	264	9.476	d.117.1.1	134779
1g2qA	187	10.29	c.61.1.1	65117
2ps1A	226	11.23		
1ha1	184	14.53		
1bkpA	278	17.05	d.117.1.1	41029
1f28A	297	22.08	d.117.1.1	59608
2hcrA	326	27.22		
2dy0A	190	27.81		
2gebA	185	29.46		
1ev5A	264	30.38	d.117.1.1	40935
1dkuA	317	32.19	c.61.1.2,c.61.1.2	34118,34119
1l5jA	865	32.76	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1fsgA	233	34.58	c.61.1.1	34029
1t71A	281	35.91	d.159.1.9	112283
1zn8A	180	41.22	c.61.1.1	125376
1c9oA	66	41.31	b.40.4.5	25325
1l3kA	196	46.18	d.58.7.1,d.58.7.1	73539,73540
1bd3A	243	46.53	c.61.1.1	34098
2yx0A	342	49.57		
1j7jA	178	49.93	c.61.1.1	84131
2j3tD	219	50.62		
1l1qA	186	50.95	c.61.1.1	77653
2q6kA	283	54.56		
1b5eA	246	55.41	d.117.1.1	41056
1u9yA	284	61.08	c.61.1.2,c.61.1.2	119655,119656
1vr5A	547	70.57	c.94.1.1	120437
2orwA	184	71.48		
2jbhA	225	72.19		
2nooA	502	75.20		
3bbdA	205	75.37		
2dkaA	544	76.49		
3bs5A	106	76.73		
2o7iA	592	77.65		
1w30A	201	78.55	c.61.1.1	114118
3b3qE	197	82.97		
2hzcA	87	83.26		
1vctA	205	85.53	a.7.12.1,d.286.1.1	119986,119987
2yyhA	139	86.09		
2e3dA	302	86.30		
1wd5A	208	88.59	c.61.1.1	114524