# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2he2A	102	3.63e-13		
1g9oA	91	4.00e-13	b.36.1.1	60400
2ozfA	92	4.03e-13		
1tp5A	119	5.80e-13	b.36.1.1	119305
1be9A	119	6.29e-13	b.36.1.1	24774
2v90A	96	8.46e-13		
2he4A	90	9.01e-13		
2qg1A	92	1.35e-12		
2i1nA	102	2.09e-12		
2ocsA	88	2.12e-12		
2fneA	117	2.14e-12	b.36.1.1	133813
2iwnA	97	2.75e-12		
1n7eA	97	2.85e-12	b.36.1.1	91691
2jikA	101	2.89e-12		
2jilA	97	3.02e-12		
2opgA	98	3.60e-12		
2awxA	105	4.26e-12		
2fe5A	94	5.22e-12	b.36.1.1	133323
2f5yA	91	6.42e-12	b.36.1.1	133015
1qauA	112	6.55e-12	b.36.1.1	24779
1qavA	90	7.90e-12	b.36.1.1	24777
1kwaA	88	1.06e-11	b.36.1.1	24772
1wf7A	103	1.10e-11	b.36.1.1	114577
2pktA	91	1.12e-11		
2qkvA	96	1.23e-11		
2q3gA	89	1.29e-11		
2gzvA	114	1.43e-11		
1q3oA	109	1.57e-11	b.36.1.1	95700
1v5lA	103	1.69e-11	b.36.1.1	108378
2iwoA	120	1.69e-11		
2fcfA	103	2.64e-11	b.36.1.1	133267
1l6oA	95	2.85e-11	b.36.1.1	84534
2f0aA	98	3.11e-11	b.36.1.1	132661
2q9vA	90	3.39e-11		
2pa1A	87	3.47e-11		
1ihjA	98	4.57e-11	b.36.1.1	62382
2i04A	85	5.59e-11		
2h2bA	107	5.67e-11		
2egoA	96	6.06e-11		
1x45A	98	6.96e-11	b.36.1.1	121679
2vphA	100	8.25e-11		
2uzcA	88	8.88e-11		
1r6jA	82	8.95e-11	b.36.1.1	97151
3bpuA	88	1.32e-10		
2reyA	100	1.53e-10		
1fc6A	388	1.64e-10	b.36.1.3,c.14.1.2	64738,64739
2rczA	81	2.41e-10		
2h3lA	103	3.87e-10	b.36.1.1	136046
1nf3C	128	1.39e-09	b.36.1.1	85596
1mfgA	95	2.01e-09	b.36.1.1	79043
2eaqA	90	2.52e-09		
1y8tA	324	7.43e-05	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	8.23e-05		
2adzA	178	0.000522	b.55.1.1	126599
1lcyA	325	0.000643	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.001541	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.002375	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.5055	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.9001	c.14.1.2	66425
2d5wA	603	3.001		
1vchA	175	3.672	c.61.1.1	119980
2p1zA	180	4.054		
2i6vA	87	4.296		
1qqqA	264	4.388	d.117.1.1	40931
2rgqA	144	5.555		
1hvyA	288	8.119	d.117.1.1	41049
1f28A	297	8.369	d.117.1.1	59608
2g8mA	264	8.511		
1evfA	264	8.558	d.117.1.1	40932
2g8oA	264	11.95	d.117.1.1	134779
1bkpA	278	12.05	d.117.1.1	41029
1ypvA	313	17.33		
1ha1	184	19.54		
1ev5A	264	22.98	d.117.1.1	40935
1g2qA	187	29.43	c.61.1.1	65117
2nooA	502	31.94		
2btuA	346	34.23		
1c9oA	66	36.56	b.40.4.5	25325
2hcrA	326	38.25		
2yzkA	178	38.41		
2yx0A	342	38.82		
1l5jA	865	39.88	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1aj2	282	43.15		
1qm9A	198	43.96	d.58.7.1,d.58.7.1	39207,39208
2hzcA	87	44.18		
2ax4A	198	46.05		
1dkuA	317	46.22	c.61.1.2,c.61.1.2	34118,34119
2q6kA	283	46.63		
1vjnA	220	53.00	d.157.1.4	100825
1b5eA	246	54.60	d.117.1.1	41056
1fxlA	167	58.31	d.58.7.1,d.58.7.1	39183,39184
2j3tD	219	58.37		
3b3qE	197	58.71		
1byiA	224	70.44	c.37.1.10	32199
1l1qA	186	74.36	c.61.1.1	77653
1n3jA	119	75.93	b.85.7.2	79963
2akaB	299	76.54	c.37.1.8	126914
1ow1A	195	77.00	b.131.1.3	93625
2go9A	161	77.79		
1z2uA	150	79.44	d.20.1.1	124389
2vefA	314	80.95		
2yyhA	139	80.95		
1zdnA	158	81.75	d.20.1.1	124943
1rqpA	299	84.38	b.141.1.1,c.132.1.1	97754,97755
1wd5A	208	86.59	c.61.1.1	114524
2orwA	184	87.89		
1o4uA	285	88.23	c.1.17.1,d.41.2.1	86624,86625
1xm7A	195	89.48	d.159.1.8	115473
2o7iA	592	89.89