# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 2.88e-13 1g9oA 91 3.01e-13 b.36.1.1 60400 2he2A 102 3.84e-13 2v90A 96 4.24e-13 1tp5A 119 4.37e-13 b.36.1.1 119305 1be9A 119 5.59e-13 b.36.1.1 24774 2he4A 90 7.56e-13 2qg1A 92 1.51e-12 2i1nA 102 2.04e-12 2fneA 117 2.05e-12 b.36.1.1 133813 2ocsA 88 2.26e-12 2iwnA 97 2.30e-12 2jikA 101 2.57e-12 2awxA 105 2.84e-12 1n7eA 97 3.14e-12 b.36.1.1 91691 2opgA 98 3.52e-12 2jilA 97 3.56e-12 2fe5A 94 4.57e-12 b.36.1.1 133323 2f5yA 91 6.10e-12 b.36.1.1 133015 1qauA 112 7.20e-12 b.36.1.1 24779 1q3oA 109 9.50e-12 b.36.1.1 95700 2q3gA 89 1.14e-11 1wf7A 103 1.25e-11 b.36.1.1 114577 2gzvA 114 1.30e-11 1qavA 90 1.60e-11 b.36.1.1 24777 2pktA 91 1.76e-11 2iwoA 120 1.81e-11 1kwaA 88 1.81e-11 b.36.1.1 24772 1v5lA 103 1.87e-11 b.36.1.1 108378 2qkvA 96 2.17e-11 2fcfA 103 2.57e-11 b.36.1.1 133267 1l6oA 95 2.63e-11 b.36.1.1 84534 2f0aA 98 2.96e-11 b.36.1.1 132661 2h2bA 107 2.98e-11 2pa1A 87 3.78e-11 2egoA 96 4.29e-11 2q9vA 90 5.26e-11 1ihjA 98 5.36e-11 b.36.1.1 62382 2i04A 85 5.40e-11 1x45A 98 5.89e-11 b.36.1.1 121679 1r6jA 82 6.62e-11 b.36.1.1 97151 1fc6A 388 8.99e-11 b.36.1.3,c.14.1.2 64738,64739 3bpuA 88 1.06e-10 2uzcA 88 1.29e-10 2vphA 100 1.38e-10 2h3lA 103 1.77e-10 b.36.1.1 136046 2rczA 81 1.86e-10 2reyA 100 1.98e-10 1mfgA 95 7.46e-10 b.36.1.1 79043 1nf3C 128 1.56e-09 b.36.1.1 85596 2eaqA 90 3.45e-09 1y8tA 324 5.09e-05 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 8.08e-05 1lcyA 325 0.000396 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 0.000793 b.36.1.4,b.47.1.1 112400,112401 2adzA 178 0.001025 b.55.1.1 126599 1sotA 320 0.002783 b.36.1.4,b.47.1.1 105852,105853 1k32A 1045 0.1137 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 1.163 c.14.1.2 66425 2p1zA 180 1.626 2d5wA 603 2.710 2i6vA 87 3.061 1vchA 175 3.469 c.61.1.1 119980 2rgqA 144 4.521 2g8mA 264 5.891 1f28A 297 6.336 d.117.1.1 59608 1qqqA 264 6.702 d.117.1.1 40931 2g8oA 264 8.698 d.117.1.1 134779 1hvyA 288 8.820 d.117.1.1 41049 1evfA 264 10.36 d.117.1.1 40932 1bkpA 278 10.39 d.117.1.1 41029 1ypvA 313 11.11 1g2qA 187 12.37 c.61.1.1 65117 2yzkA 178 14.78 2hcrA 326 27.20 1ev5A 264 27.53 d.117.1.1 40935 1ha1 184 27.99 2q6kA 283 29.29 2yx0A 342 29.35 1rqpA 299 31.03 b.141.1.1,c.132.1.1 97754,97755 1l5jA 865 31.20 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1u9yA 284 33.49 c.61.1.2,c.61.1.2 119655,119656 2vefA 314 35.36 2gebA 185 42.50 1b5eA 246 47.80 d.117.1.1 41056 2yyhA 139 48.16 2etjA 250 49.74 c.55.3.1 132360 2akaB 299 50.85 c.37.1.8 126914 1dkuA 317 51.86 c.61.1.2,c.61.1.2 34118,34119 1wd5A 208 53.31 c.61.1.1 114524 1qm9A 198 55.10 d.58.7.1,d.58.7.1 39207,39208 2j3tD 219 56.23 2ax4A 198 57.45 1aj2 282 57.65 2f4nA 273 65.43 2nooA 502 66.32 2z81A 549 68.39 1o4uA 285 69.06 c.1.17.1,d.41.2.1 86624,86625 2ps1A 226 71.65 2pqmA 343 77.36 2z2uA 311 77.96 2adcA 229 78.72 d.58.7.1,d.58.7.1 126582,126583 2j73A 103 78.83 1ir6A 424 80.38 c.107.1.2 71342 2d9iA 96 82.13 1vdmA 153 82.36 c.61.1.1 119994 1bd3A 243 87.77 c.61.1.1 34098