# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2he2A	102	4.65e-13		
1g9oA	91	5.40e-13	b.36.1.1	60400
1tp5A	119	6.34e-13	b.36.1.1	119305
2ozfA	92	8.40e-13		
1be9A	119	8.52e-13	b.36.1.1	24774
2v90A	96	1.20e-12		
2he4A	90	1.35e-12		
2fneA	117	2.11e-12	b.36.1.1	133813
2qg1A	92	2.15e-12		
2i1nA	102	2.45e-12		
2ocsA	88	2.70e-12		
1n7eA	97	2.98e-12	b.36.1.1	91691
2awxA	105	3.56e-12		
2iwnA	97	3.64e-12		
2jilA	97	4.02e-12		
2fe5A	94	4.40e-12	b.36.1.1	133323
2jikA	101	4.77e-12		
2opgA	98	4.80e-12		
2f5yA	91	6.12e-12	b.36.1.1	133015
1qauA	112	7.94e-12	b.36.1.1	24779
1qavA	90	1.22e-11	b.36.1.1	24777
1kwaA	88	1.30e-11	b.36.1.1	24772
2gzvA	114	1.67e-11		
1wf7A	103	1.81e-11	b.36.1.1	114577
1v5lA	103	1.97e-11	b.36.1.1	108378
2q3gA	89	2.10e-11		
2pktA	91	2.22e-11		
2qkvA	96	2.24e-11		
2iwoA	120	2.67e-11		
1q3oA	109	2.76e-11	b.36.1.1	95700
2fcfA	103	3.24e-11	b.36.1.1	133267
2f0aA	98	3.39e-11	b.36.1.1	132661
1ihjA	98	3.96e-11	b.36.1.1	62382
2q9vA	90	4.03e-11		
1l6oA	95	4.45e-11	b.36.1.1	84534
2h2bA	107	5.10e-11		
2pa1A	87	5.49e-11		
2i04A	85	5.64e-11		
1r6jA	82	7.17e-11	b.36.1.1	97151
2egoA	96	8.50e-11		
1x45A	98	1.03e-10	b.36.1.1	121679
1fc6A	388	1.25e-10	b.36.1.3,c.14.1.2	64738,64739
2uzcA	88	1.34e-10		
3bpuA	88	1.59e-10		
2reyA	100	1.72e-10		
2vphA	100	1.97e-10		
2h3lA	103	2.53e-10	b.36.1.1	136046
2rczA	81	2.79e-10		
1mfgA	95	9.34e-10	b.36.1.1	79043
1nf3C	128	1.73e-09	b.36.1.1	85596
2eaqA	90	3.92e-09		
1y8tA	324	3.30e-05	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	4.64e-05		
1lcyA	325	0.000334	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.000677	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.000852	b.36.1.4,b.47.1.1	105852,105853
2adzA	178	0.002944	b.55.1.1	126599
1k32A	1045	0.08603	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.3728	c.14.1.2	66425
1vchA	175	1.357	c.61.1.1	119980
2p1zA	180	2.238		
2rgqA	144	3.606		
2d5wA	603	3.765		
2i6vA	87	4.258		
1qqqA	264	7.440	d.117.1.1	40931
1f28A	297	9.375	d.117.1.1	59608
1g2qA	187	10.88	c.61.1.1	65117
1hvyA	288	11.03	d.117.1.1	41049
1evfA	264	11.47	d.117.1.1	40932
2g8mA	264	11.92		
2g8oA	264	14.76	d.117.1.1	134779
1bkpA	278	16.03	d.117.1.1	41029
2yzkA	178	17.45		
1ha1	184	18.14		
1ypvA	313	21.87		
1dkuA	317	23.81	c.61.1.2,c.61.1.2	34118,34119
2hcrA	326	25.11		
1l5jA	865	27.25	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1ev5A	264	27.79	d.117.1.1	40935
2q6kA	283	28.32		
1u9yA	284	29.88	c.61.1.2,c.61.1.2	119655,119656
2z1cA	75	31.44		
2btuA	346	33.34		
1wd5A	208	39.35	c.61.1.1	114524
2yx0A	342	39.96		
2ax4A	198	41.64		
2j3tD	219	41.84		
1t71A	281	42.23	d.159.1.9	112283
1bd3A	243	47.99	c.61.1.1	34098
2adcA	229	50.62	d.58.7.1,d.58.7.1	126582,126583
1l3kA	196	51.08	d.58.7.1,d.58.7.1	73539,73540
1c9oA	66	51.73	b.40.4.5	25325
2vefA	314	55.00		
2hzcA	87	55.12		
2blnA	305	56.80	b.46.1.1,c.65.1.1	128734,128735
1z2uA	150	60.52	d.20.1.1	124389
2aeeA	211	61.28	c.61.1.1	126620
1s98A	107	61.88	b.124.1.1	105377
1fxlA	167	68.13	d.58.7.1,d.58.7.1	39183,39184
1fsgA	233	74.22	c.61.1.1	34029
1l1qA	186	74.40	c.61.1.1	77653
2e3dA	302	75.58		
1qm9A	198	78.00	d.58.7.1,d.58.7.1	39207,39208
2gebA	185	79.27		
2d9iA	96	81.25		
3bs5A	106	81.52		
1o4uA	285	82.07	c.1.17.1,d.41.2.1	86624,86625
1aj2	282	89.66