# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g9oA	91	1.71e-11	b.36.1.1	60400
2he2A	102	1.87e-11		
2v90A	96	3.46e-11		
2ozfA	92	4.04e-11		
2he4A	90	4.44e-11		
2i1nA	102	5.57e-11		
2jilA	97	6.65e-11		
1tp5A	119	7.04e-11	b.36.1.1	119305
1n7eA	97	7.78e-11	b.36.1.1	91691
2fneA	117	8.20e-11	b.36.1.1	133813
2fe5A	94	9.54e-11	b.36.1.1	133323
2jikA	101	9.98e-11		
2iwnA	97	1.00e-10		
2qg1A	92	1.10e-10		
1be9A	119	1.22e-10	b.36.1.1	24774
2awxA	105	1.31e-10		
1wf7A	103	1.41e-10	b.36.1.1	114577
2opgA	98	1.65e-10		
1v5lA	103	1.71e-10	b.36.1.1	108378
2ocsA	88	1.92e-10		
2q3gA	89	2.86e-10		
1qavA	90	3.06e-10	b.36.1.1	24777
2f5yA	91	3.19e-10	b.36.1.1	133015
2pktA	91	3.21e-10		
2gzvA	114	3.35e-10		
2h2bA	107	4.75e-10		
1q3oA	109	5.22e-10	b.36.1.1	95700
2fcfA	103	5.22e-10	b.36.1.1	133267
1x45A	98	8.30e-10	b.36.1.1	121679
1kwaA	88	8.82e-10	b.36.1.1	24772
1qauA	112	9.06e-10	b.36.1.1	24779
2pa1A	87	9.89e-10		
2iwoA	120	9.92e-10		
2q9vA	90	1.08e-09		
2f0aA	98	1.17e-09	b.36.1.1	132661
1l6oA	95	1.31e-09	b.36.1.1	84534
2uzcA	88	1.39e-09		
2qkvA	96	1.62e-09		
1ihjA	98	1.73e-09	b.36.1.1	62382
2vphA	100	1.75e-09		
2egoA	96	2.10e-09		
2i04A	85	2.95e-09		
2h3lA	103	3.40e-09	b.36.1.1	136046
1mfgA	95	3.87e-09	b.36.1.1	79043
2reyA	100	4.01e-09		
1r6jA	82	4.17e-09	b.36.1.1	97151
3bpuA	88	5.07e-09		
1fc6A	388	5.04e-08	b.36.1.3,c.14.1.2	64738,64739
1nf3C	128	1.83e-07	b.36.1.1	85596
2eaqA	90	2.22e-07		
2rczA	81	1.64e-06		
2p3wA	112	0.000663		
1y8tA	324	0.002109	b.36.1.4,b.47.1.1	122763,122764
1lcyA	325	0.002741	b.36.1.4,b.47.1.1	73834,73835
1sotA	320	0.005380	b.36.1.4,b.47.1.1	105852,105853
1te0A	318	0.007341	b.36.1.4,b.47.1.1	112400,112401
2adzA	178	0.06361	b.55.1.1	126599
1k32A	1045	0.7527	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.7556	c.14.1.2	66425
2i6vA	87	10.28		
1ha1	184	10.99		
2p1zA	180	17.22		
1l3kA	196	24.37	d.58.7.1,d.58.7.1	73539,73540
1fxlA	167	33.36	d.58.7.1,d.58.7.1	39183,39184
2ps1A	226	42.10		
1w30A	201	46.20	c.61.1.1	114118
1ow1A	195	47.54	b.131.1.3	93625
2ax4A	198	47.90		
1vchA	175	48.27	c.61.1.1	119980
2yzkA	178	51.08		
1o4uA	285	51.12	c.1.17.1,d.41.2.1	86624,86625
2rgqA	144	54.47		
1w94A	156	56.59	c.51.1.2	120774
1j3mA	129	61.67	d.129.7.1	103836
2d5wA	603	61.67		
1c9oA	66	65.98	b.40.4.5	25325
2qsfX	171	74.82		
2q6kA	283	81.96		
1qm9A	198	84.08	d.58.7.1,d.58.7.1	39207,39208
1b12A	248	84.46	b.87.1.2	28388
3c2cA	112	86.73	a.3.1.1	15885
1yxaA	398	89.25		
2j3tD	219	89.69