# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 1.51e-13 b.36.1.1 60400 2he2A 102 1.97e-13 2ozfA 92 2.75e-13 2v90A 96 3.37e-13 1tp5A 119 3.65e-13 b.36.1.1 119305 1be9A 119 4.69e-13 b.36.1.1 24774 2jilA 97 4.95e-13 2he4A 90 5.61e-13 2awxA 105 6.16e-13 2fneA 117 8.32e-13 b.36.1.1 133813 2qg1A 92 9.32e-13 2jikA 101 1.15e-12 1n7eA 97 1.27e-12 b.36.1.1 91691 2i1nA 102 1.35e-12 2iwnA 97 1.42e-12 1qavA 90 1.87e-12 b.36.1.1 24777 2ocsA 88 2.42e-12 2fe5A 94 2.63e-12 b.36.1.1 133323 2opgA 98 2.84e-12 2gzvA 114 4.17e-12 2q3gA 89 4.69e-12 1v5lA 103 4.91e-12 b.36.1.1 108378 2f5yA 91 5.20e-12 b.36.1.1 133015 1wf7A 103 5.34e-12 b.36.1.1 114577 2pktA 91 7.15e-12 2qkvA 96 7.33e-12 1qauA 112 8.91e-12 b.36.1.1 24779 2h2bA 107 9.69e-12 1l6oA 95 9.92e-12 b.36.1.1 84534 1q3oA 109 9.94e-12 b.36.1.1 95700 2fcfA 103 1.24e-11 b.36.1.1 133267 2iwoA 120 1.24e-11 2q9vA 90 1.27e-11 2pa1A 87 1.27e-11 2f0aA 98 1.33e-11 b.36.1.1 132661 1x45A 98 1.38e-11 b.36.1.1 121679 1ihjA 98 1.40e-11 b.36.1.1 62382 1kwaA 88 1.46e-11 b.36.1.1 24772 2uzcA 88 2.49e-11 2i04A 85 3.53e-11 2egoA 96 4.20e-11 2vphA 100 4.36e-11 2reyA 100 6.82e-11 3bpuA 88 1.25e-10 2h3lA 103 1.27e-10 b.36.1.1 136046 1r6jA 82 1.64e-10 b.36.1.1 97151 1mfgA 95 2.91e-10 b.36.1.1 79043 1fc6A 388 1.28e-09 b.36.1.3,c.14.1.2 64738,64739 1nf3C 128 2.01e-09 b.36.1.1 85596 2eaqA 90 1.58e-08 2rczA 81 4.64e-08 2p3wA 112 0.000156 1lcyA 325 0.001256 b.36.1.4,b.47.1.1 73834,73835 1y8tA 324 0.001453 b.36.1.4,b.47.1.1 122763,122764 1te0A 318 0.01256 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 0.02721 b.36.1.4,b.47.1.1 105852,105853 1k32A 1045 0.06200 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 1.725 c.14.1.2 66425 2adzA 178 2.311 b.55.1.1 126599 2i6vA 87 3.510 1hvyA 288 3.999 d.117.1.1 41049 2g8mA 264 4.026 1f28A 297 4.634 d.117.1.1 59608 1qqqA 264 4.784 d.117.1.1 40931 1bkpA 278 5.737 d.117.1.1 41029 1ypvA 313 6.013 2btuA 346 7.900 1evfA 264 9.911 d.117.1.1 40932 2g8oA 264 11.11 d.117.1.1 134779 2ax4A 198 12.81 2qckA 167 15.32 1ha1 184 16.53 1ow1A 195 16.62 b.131.1.3 93625 2r6vA 191 16.94 1vjnA 220 17.69 d.157.1.4 100825 1ev5A 264 19.81 d.117.1.1 40935 2vefA 314 20.98 2j73A 103 24.76 2dkaA 544 26.54 2akaB 299 27.62 c.37.1.8 126914 1uanA 227 33.03 c.134.1.1 99135 2p1zA 180 36.77 1z7xW 461 38.98 c.10.1.1 124675 2hcrA 326 39.58 2ptfA 233 42.70 1xm7A 195 44.57 d.159.1.8 115473 3bpkA 206 45.16 1l3kA 196 48.21 d.58.7.1,d.58.7.1 73539,73540 2d5wA 603 49.48 1xv5A 401 54.24 1vchA 175 62.24 c.61.1.1 119980 1aj2 282 64.17 1i52A 236 64.51 c.68.1.13 61767 2yx0A 342 65.07 1dmgA 225 66.61 c.22.1.1 31036 1w30A 201 68.87 c.61.1.1 114118 2rgqA 144 70.12 1aj2A 282 71.03 c.1.21.1 29665 3bs5A 106 72.30 2ecuA 149 74.33 2d9iA 96 76.66 1lsuA 147 78.00 c.2.1.9 74250 1p91A 269 80.09 c.66.1.33 94378 2d51A 406 80.41 1uldA 150 80.90 b.29.1.3 99545 1g2qA 187 86.58 c.61.1.1 65117