# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g9oA 91 2.80e-17 b.36.1.1 60400 2ozfA 92 4.73e-17 2v90A 96 8.57e-16 2qg1A 92 9.38e-16 2he4A 90 1.05e-15 2ocsA 88 1.40e-15 2opgA 98 2.42e-15 2gzvA 114 2.96e-15 2f5yA 91 4.18e-15 b.36.1.1 133015 2he2A 102 4.91e-15 1ihjA 98 5.18e-15 b.36.1.1 62382 2egoA 96 6.91e-15 2jilA 97 7.55e-15 1tp5A 119 7.94e-15 b.36.1.1 119305 1qauA 112 8.37e-15 b.36.1.1 24779 2qkvA 96 8.44e-15 2fe5A 94 8.64e-15 b.36.1.1 133323 2fneA 117 8.89e-15 b.36.1.1 133813 1qavA 90 1.01e-14 b.36.1.1 24777 2i1nA 102 1.05e-14 2iwnA 97 1.11e-14 1n7eA 97 1.13e-14 b.36.1.1 91691 2q3gA 89 1.59e-14 1be9A 119 1.61e-14 b.36.1.1 24774 2jikA 101 1.79e-14 2pktA 91 1.88e-14 2uzcA 88 1.91e-14 2fcfA 103 2.22e-14 b.36.1.1 133267 2awxA 105 3.13e-14 1mfgA 95 4.33e-14 b.36.1.1 79043 2h2bA 107 4.40e-14 3bpuA 88 8.12e-14 2q9vA 90 9.09e-14 1q3oA 109 9.21e-14 b.36.1.1 95700 1l6oA 95 9.29e-14 b.36.1.1 84534 1x45A 98 1.04e-13 b.36.1.1 121679 2reyA 100 1.41e-13 2h3lA 103 2.39e-13 b.36.1.1 136046 1kwaA 88 2.70e-13 b.36.1.1 24772 2pa1A 87 2.89e-13 2i04A 85 3.49e-13 2vphA 100 6.44e-13 2iwoA 120 8.47e-13 1wf7A 103 9.89e-13 b.36.1.1 114577 1r6jA 82 1.54e-12 b.36.1.1 97151 2f0aA 98 3.00e-12 b.36.1.1 132661 1nf3C 128 9.62e-12 b.36.1.1 85596 2eaqA 90 3.08e-11 1v5lA 103 1.87e-10 b.36.1.1 108378 2rczA 81 1.17e-08 1fc6A 388 1.95e-08 b.36.1.3,c.14.1.2 64738,64739 1y8tA 324 1.87e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 1.19e-05 1te0A 318 0.000110 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 0.000463 b.36.1.4,b.47.1.1 73834,73835 2i6vA 87 0.001003 1k32A 1045 0.1022 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2j3tD 219 2.023 2btuA 346 9.234 2bw3A 534 11.15 a.270.1.1,c.55.3.12 129317,129318 1vj0A 380 11.26 b.35.1.2,c.2.1.1 100786,100787 1vs0A 310 12.06 1luzA 88 12.95 b.40.4.5 74271 1yqdA 366 14.87 2f9hA 129 15.55 b.161.1.1 133162 1f8fA 371 17.19 b.35.1.2,c.2.1.1 83246,83247 1x3mA 415 17.87 c.55.1.2,c.55.1.2 121664,121665 2ap1A 327 17.90 c.55.1.10,c.55.1.10 127108,127109 1cjwA 166 18.33 d.108.1.1 40818 1widA 130 22.30 b.142.1.2 114667 1u3wA 374 22.49 b.35.1.2,c.2.1.1 113013,113014 2b3rA 134 22.62 2h7aA 110 22.95 1f20A 435 23.81 b.43.4.1,c.25.1.4 64932,64933 1p0fA 373 24.31 b.35.1.2,c.2.1.1 87642,87643 2dstA 131 24.50 2dxqA 150 25.19 2jhfA 374 25.21 b.35.1.2,c.2.1.1 138314,138315 1a62A 130 26.04 a.140.3.1,b.40.4.5 64708,64709 1xk5A 204 26.89 2c5qA 240 27.70 2e1zA 415 28.07 1l0cA 207 28.28 d.108.1.1 73393 1kqfA 1015 28.86 b.52.2.2,c.81.1.1 72871,72872 1z4eA 153 29.24 d.108.1.1 124431 1a62 130 31.53 3bdiA 207 31.69 2ejeA 114 33.20 1rypH 205 33.60 d.153.1.4 41876 2ei9A 240 34.03 2i62A 265 35.29 1bebA 162 38.04 b.60.1.1 27115 1vkcA 158 39.75 d.108.1.1 113663 2go9A 161 40.64 1u94A 356 41.41 c.37.1.11,d.48.1.1 107743,107744 2b4uA 335 45.99 2oaaA 249 45.99 1prtF 98 47.00 b.40.2.1 25140 1l3kA 196 47.01 d.58.7.1,d.58.7.1 73539,73540 1lci 550 47.10 1s3zA 165 49.03 d.108.1.1 105250 1pneA 139 49.18 d.110.1.1 40866 2pdoA 144 49.26 1bn7A 294 49.46 c.69.1.8 34677 1tllA 688 49.56 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 2qguA 211 49.91 1brwA 433 51.17 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1q60A 99 52.78 d.288.1.1 111654 1yb3A 175 54.47 d.296.1.2 122869 1ygsA 234 54.94 b.26.1.1 23907 1jqbA 351 57.86 b.35.1.2,c.2.1.1 77151,77152 1um0A 365 58.13 d.258.1.1 107942 1stmA 157 59.22 b.121.7.1 23281 1ey4A 149 59.25 b.40.1.1 24815 2j58A 359 61.49 2o38A 120 63.91 1yexA 186 64.48 c.47.1.10 123021 1ckmA 330 64.71 b.40.4.6,d.142.2.3 25358,41585 2ouiA 360 65.80 1q0rA 298 65.81 c.69.1.28 95508 2gs8A 317 67.29 1kevA 351 70.01 b.35.1.2,c.2.1.1 24749,29765 1pdkB 157 72.07 b.2.3.2 22427 1uch 230 72.20 1d4xG 126 72.89 d.109.1.1 59109 2pavP 139 73.42 1euhA 475 73.98 c.82.1.1 35369 1wv8A 73 74.01 d.304.1.1 121326 2pbdP 139 75.03 1vh0A 161 78.07 c.116.1.3 100626 1uz5A 402 79.63 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1nu5A 370 80.26 c.1.11.2,d.54.1.1 92183,92184 1rowA 109 81.10 b.1.11.2 97676 1n8kA 374 81.53 b.35.1.2,c.2.1.1 80298,80299 1ha1 184 81.98 1y9aA 360 83.18 1lf7A 182 83.24 b.60.1.1 73878 2f4iA 197 84.37 b.40.11.1 132923 2fl4A 149 85.80 d.108.1.1 133706 2z0tA 109 88.54 2d8aA 348 89.16