UNSUBMITTED sorted by most urgent first Those with no soft deadlines (same as hard deadline, or already past) have ---- as their soft deadline THINGS DUE BETWEEN the 23rd-28th of July are due at 6pm on the 22nd! THINGS DUE on the 2nd of August or after are due at 6pm on the 1st! target due soft comments ------------------------------------------------------------ REFINEMENT MODELS ------------------------------------------------------------ MULTIMERS (have to match what is in the doc.html files) -------------------------------------------------------------------------------- SUBMITTED sorted by target number target due submit solution comments T0283 21 Jun 20 Jun 2hh6A all-helical, no strong hits, maybe 6-helical bundle (Firas) (prelim 31 May 2006) T0284 1 Jun 31 May comparative modeling, 12-14 different templates, need dimer (Kevin) T0285 26 Jun 25 Jun no strong hits (ORFan), (prelim 31 May 2006) (Kevin+George) T0286 26 Jun 24 Jun comparative modeling, but big insertion (prelim 5 June) (Kevin+Zack+Chris) T0287 1 Jun 31 May H. pylori ORFan (George, 5 different models) T0288 9 Jun 22 May 2gzvA fold-recognition, PDZ domain (30% id) (kevin) TR288 6 Jul 15 Jun 2gzvA quick and dirty refinement (kevin) T0289 9 Jun 9 Jun 2gu2A fold-recognition, with strong hits (Grant) T0290 10 Jun 3 Jun 2gw2A comparative modeling (kevin) T0291 11 Jun 4 Jun 2gsfA comparative modeling (kevin) T0292 11 Jun 5 Jun 2cl1A comparative modeling 1rdqE (kevin) T0293 12 Jun 12 Jun 2h00A easy fold recognition (30% id) (prelim 8 June 2006) kevin T0294 29 Jun ---- 2h1sA CANCELED comparative modeling (dimer) (prelim 8 Jun) T0295 15 Jun 5 Jun 2h1rA 2-domain, very similar to 1zq9A (kevin) T0296 24 Jun 24 Jun 2ha9A no close homologs in PDB (George) (prelim 11 June) T0297 22 Jun 10 Jun 2hsjA one-domain fold recognition 1es9A (kevin) T0298 23 Jun 18 Jun 2hjsA easy fold recognition kevin (prelim 11 Jun) DIMER rejected T0299 30 Jun 29 Jun 2hiyA ab initio, 180 residues George (prelim 13 June) T0300 16 Jun 15 Jun 2h3rA ab initio, 102 residues (Firas) DIMER-15 Jun T0301 6 Jul 6 Jul 2h9fA fold recognition (Kevin+Firas+Grant) (prelim 15 June) T0302 15 Jun 5 Jun 2h33A comparative modeling, all-alpha 1fqiA (kevin) T0303 10 Jul 17 Jun 2hszA comparative modeling 2ah5A (Kevin+Martin) (prelim 17 Jun) T0304 10 Jul 9 Jul 2h28A ab initio, 122 residues (George) (prelim 29 Jun) MONOMER T0305 20 Jun 16 Jun 2h4vA comparative modeling 2fh7A (kevin) DIMER-19 Jun T0306 11 Jul 11 Jul 2hd3A ab initio, 95 residues mostly beta (Zack+Chris) (prelim 20 Jun) T0307 11 Jul 11 Jul 2h5nA ab initio, 133 residues mostly alpha (Firas+Martin) (prelim 20 Jun) T0308 21 Jun 18 Jun 2h57A comparative modeling 1mr3F ... (Zack+Kevin) TRIMER 20 Jun TR308 19 Jul 15 Jul 2h57A loops badly closed, we couldn't quite fix them. T0309 7 Jul 4 Jul 2h4oA fold recognition 1tf7A (ORFan) (Kevin) (prelim 17 Jun 06) T0310 26 Jun 24 Jun 2h5gA comparative modeling 1vluA, 1o20A (Kevin) TETRAMER (submit as DIMER) (prelim 20 Jun) T0311 7 Jul 5 Jul 2icpA,2ictA fold recognition 1utxA (Firas+Erich) (prelim 20 Jun) T0312 12 Jul 11 Jul 2h6lA distant fold-rec (1xv2A) needs alignment help, 146 residues (Kevin+George+Navya) (prelim 22 Jun) T0313 23 Jun 20 Jun 2h58A comparative model (1smdA, 1f9vA, ...) (Kevin) MONOMER T0314 13 Jul 12 Jul 2hg6A ab initio, 106 residues (Grant) (prelim 22 Jun) T0315 27 Jun 21 Jun 2gzxA comparative modeling 1j6oA small gaps to close (Kevin) MONOMER T0316 27 Jun 27 Jun 2hmaA fold recognition multi-domain (first is c.26.2.1) ab initio for rest? (Grant+Kevin) T0317 28 Jun 21 Jun 2hcmA comparative modeling (1wrmA, 1yz4A, 1m3gA) (Kevin) T0318 14 Jul 14 Jul 2hb6A comparative modeling (for C-terminal 2ewbA,1lam) ab initio for N-terminal HEXAMER-rejected (Martin+Chris) (prelim 26 Jun) T0319 14 Jul 13 Jul 2j6aA ab initio, 135 residues, maybe metal-binding (george) (prelim 26 Jun) T0320 28 Jun 28 Jun fold recognition+? dom1 (1sur c.26.2.*) dom2 (1ak0?) (Firas+Pinal) T0321 9 Jul 8 Jul 2h1qA ab initio or difficult fold recognition, 251 residues (zack) (prelim 27 Jun) T0322 29 Jun 27 Jun 2hboA comparative modeling/easy FR d.38.1.5 (kevin) (optimized as dimer) TR322 29 Aug 15 Aug 2hboA CASP target lacks res. 1-11, 154-157; res. 64, 66, 71, 91, 116 are MSE T0323 30 Jun 27 Jun 2h56A comparative 1ornA,1mpgA (a.96.1.*) (kevin) T0324 1 Jul 1 Jul 2hdoA comparative 2ah5A,2fi1A (c.108.1.*) (Kevin+Martin) (prelim 28 Jun) T0325 20 Jul 19 Jul 2i5iA fold recognition? 1v6tA? 1ny1A? (Firas+Sylvia) (prelim 28 Jun) T0326 5 Jul 2 Jul 2h2wA comparative 2ghrA, dimer (Kevin+Grant+Navya) (prelim 2 Jul) T0327 24 Jul 2 Jul 2hgcA fold recognition dimer 1tbxA (kevin+Grant+Pinal+sylvia) (prelim 2 Jul) T0328 5 Jul 3 Jul 2hagA comparative 2gvkA (hexamer, S_{2,3}) (kevin) T0329 6 Jul 4 Jul 2hi0A comparative 2ah5A, 2go7A, ... monomer (martin+kevin) (prelim 4 Jul) T0330 8 Jul 4 Jul 2hcfA comparative modeling 2ah5A (c.108.1.*) (martin) (prelim 4 Jul) T0331 26 Jul 4 Jul 2hhzA easy fold recognition 1g79A (b.45.1.1) dimer (Kevin+Grant+Navya) (prelim 4 Jul) T0332 8 Jul 4 Jul 2ha8A comparative modeling 1zjrA (c.116.1*) DIMER (kevin) T0333 9 Jul 4 Jul fold recognition 2c1xA, 2acvA, ... (Kevin+Firas) (prelim 4 Jul) T0334 12 Jul 11 Jul comparative model 2aqjA (dimer?) (Crissan+Cynthia) (prelim 9 Jul) T0335 27 Jul 26 Jul 2hepA new-fold? fold-rec? 85 residues (Grant+Navya) (prelim 9 Jul) T0336 13 Jul ---- 2db0A CANCELED ab initio or hard fold-recognition, 253 residues T0337 15 Jul ---- 2dbbA CANCELED comparative model, 1ri7A T0338 15 Jul 15 Jul 2ivxA fold-rec: 2cchB, 1kxu, 1jkw (a.74.1.1) DIMER (Firas+Pinal) (prelim 11 Jul) T0339 15 Jul 15 Jul 2hdyA comparative modeling 1p3wA, 1eg5A DIMER (Pinal+Grant) (prelim 11 Jul) T0340 13 Jul 11 Jul 2he4A comparative modeling 1g9oA MONOMER (Crissan+Cynthia) (prelim 11 Jul) T0341 16 Jul 15 Jul 2ho4A comparative modeling 1zjjA (Zack) (prelim 12 Jul) T0342 23 Jul 22 Jul 2i5tA fold recognition 2g0qA, 1vkbA 188 residues (Crissan+Cynthia) (prelim 12 Jul) T0343 16 Jul 15 Jul ab initio, 104 residues ORFan DIMER (George) (prelim 12 Jul) T0344 1 Aug 31 Jul ab initio 229 residues ORFan (Zack+Chris) (prelim 16 Jul) T0345 17 Jul 12 Jul 2he3A comparative modeling 2f8aA (kevin) T0346 17 Jul 13 Jul 2he9A comparative modeling 1a58 DIMER (kevin) T0347 2 Aug 31 Jul 2hwjA fold-rec N-terminal 1vk1A, new-fold c-terminal 205 residues (Kevin+Zack) (prelim 17 Jul) T0348 18 Jul 16 Jul 2hf1A fold-recognition, 2ct7A 68 residues (Crissan+Cynthia+Kevin) T0349 18 Jul 16 Jul 2hfvA fold-recognition, 1zhvA 75 residues (Crissan+Cynthia+Grant) T0350 19 Jul 19 Jul 2hc5A new fold, alpha+beta 117 residues (Martin) T0351 19 Jul 18 Jul 2hg7A new fold, all-alpha 117 residues (George) T0352 20 Jul 19 Jul new fold, all-alpha 117 residues (Kevin) (prelim 18 Jul) T0353 21 Jul 21 Jul 2hfqA fold rec? 1jg5A 85 residues pentamer? (Martin) (prelim 19 Jul) T0354 21 Jul 20 Jul 2id1A new fold 130 residues (Firas+Pinal) (prelim 19 Jul) T0355 22 Jul 21 Jul fold recognition? TIM-barrel 288 residues (George+Grant) (prelim 19 Jul) T0356 2 Aug 1 Aug 2idbA new-fold, 505 residues (multidomain?) (Grant+Firas+Pinal) (prelim 20 Jul) T0357 27 Jul 25 Jul 2hi6A fold-rec??? 141 residues (Kevin+Martin) (prelim 25 Jul) T0358 26 Jul 26 Jul 2hjjA new-fold 87 residues (Crissan+Cynthia) (prelim 22 Jul) T0359 26 Jul 25 Jul 2iwnA comparative 1d5gA (George) (prelim 22 Jul) T0360 28 Jul 28 Jul 2hxjA fold-rec 1dvoA 141 residues (Crissan+Cynthia) (prelim 21 Jul) T0361 29 Jul 29 Jul 2hktA new-fold, 169 residues (Firas+George) (prelim 26 Jul) T0362 28 Jul 26 Jul 2hx5A comparative (2gf6A, 1s5uA, ...) (Navya+Sylvia) (prelim 21 Jul) TR362 29 Aug 13 Aug 2hx5A CASP target lacks res. 145-151; res. 1, 24, 87 are MSE (Kevin) T0363 29 Jul 26 Jul 2hj1A fold-rec 1vjkA, 1oqqA, ... 97 residues (Navya+Cynthia) T0364 30 Jul 26 Jul 2hljA fold-rec (1s5uA, ...) 156 residues (Crissan+Navya) T0365 30 Jul 29 Jul 2iiuA fold-rec? 1sumb 226 residues (George+Kevin) T0366 30 Jul 29 Jul 2iwoA,2iwpA comparative 2fneA DIMER (Kevin+Martin) TR366 11 Aug 1 Aug 2iwoA,2iwpA refinement (Kevin) CANCELLED T0367 31 Jul 30 Jul 2hsbA fold-rec a.24.16.3 (Firas+Martin) TR367 29 Aug ---- 2hsbA res. 1, 24, 38, 45 are MSE (RELEASED TOO SOON) T0368 31 Jul 30 Jul 2hr2A fold-rec a.118.8.1 (Grant+Sylvia) TR368 29 Aug 23 Aug 2hr2A CASP target lacks res. 158-174; res. 1, 37, 43, 121, 130, 144, 145 are MSE T0369 1 Aug 31 Jul 2hkvA fold-rec 2f22A (Firas+Martin) T0370 31 Jul 30 Jul 2iabA fold-reg b.45.1.1 (Cynthia+Sylvia) TR370 29 Aug 28 Aug 2iabA res. 1, 145 are MSE (Cynthia, Sylvia, Kevin) T0371 1 Aug 30 Jul 2hx1A comparative 1zjjA (Chris+Zack+Kevin) T0372 3 Aug 3 Aug 2hqyA 2-domain (N-terminal ab initio? fold-rec?, C-terminal fold-rec d.108.1.*) DIMER (Chris+Zack) (prelim 1 Jul) T0373 2 Aug 31 Jul 2hr3A fold-rec a.4.5.28, need to optimize as dimer. (kevin) T0374 3 Aug 2 Aug 2i6cA easy fold-rec d.108.1.1 [compare with T0372???] (Chris+Zack) T0375 3 Aug 2-4 Aug 2hlzA comparative (c.72.1.1, 1rkd or 1tyyA) TETRAMER (Chris+Zack) T0376 4 Aug 4 Aug 2hmcA comparative TIM-barrel (c.1.10.1) (Grant+George) T0377 4 Aug ---- 2ivyA CANCELLED T0378 4 Aug 4 Aug 2i6dA comparative 1ipaA (Pinal+George) T0379 4 Aug 4 Aug 2i6xA comparative 2b0cA (Crissan+Cynthia) T0380 5 Aug 1 Aug 2hq7A comparative 1dnlA (Kevin+Navya) TR380 29 Aug ---- 2hq7A CASP target lacks res. 1, 144, 145; res. 21, 36, 37, 57, 81, 97 are MSE (RELEASED TOO SOON) T0381 5 Aug 4 Aug 2ia2A comparative 2g7uA (Crissan+Cynthia+Kevin) T0382 5 Aug 4 Aug 2i9cA fold-rec? new-fold? (George+Sylvia+Navya) T0383 6 Aug 5 Aug 2hngA fold-rec? new-fold? (Sylvia+Cynthia+Kevin) T0384 6 Aug 5 Aug 2ho3A,2ho5A comparative 1h6dA... (one hairpin to fix up) (Pinal+Chris) T0385 6 Aug 5 Aug 2ib0A fold-recognition, 4-helix bundle. (Kevin+Grant+Crissan+Cynthia) T0386 7 Aug 6 Aug comparative 2g03A, 2f6sA (Grant+Zack)