title = SHAKEBAKE cpp = /usr/bin/cpp ; the c pre-processor define = -DFLEXIBLE constraints = none integrator = steep dt = 0.002 ; ps ! nsteps = 400 nstlist =5 ns_type = grid rlist = 0.9 coulombtype = PME rcoulomb = 0.9 rvdw = 1.4 fourierspacing = 0.12 fourier_nx =0 fourier_ny =0 fourier_nz =0 pme_order =4 ewald_rtol = 1e-5 optimize_fft = yes ; ; Energy minimizing stuff ; emtol = 1000.0 emstep = 0.01