#!/usr/bin/perl -w

# cite > foo.html
# prints a request to cite relevant papers.

print qq{
<P><P>
Please cite the following papers:
<!-- generated by the \'cite\' perl script -->
<UL> 

<P><LI>
Kevin Karplus, Sol Katzman, George Shackleford, Martina Koeva, Jenny Draper,
  Bret Barnes, Marcia Soriano, and Richard Hughey.
SAM-T04: what's new in protein-structure prediction for CASP6.
<I> Proteins: Structure, Function, and Bioinformatics</I>, 2005.
61(S7):135-142.
<A HREF="http://dx.doi.org/10.1002/prot.20730">doi:10.1002/prot.20730</A>
</LI>

<P>
<LI>
Rachel Karchin, Melissa Cline, and Kevin Karplus.
Evaluation of local structure alphabets based on residue burial.
<i>Proteins: Structure, Function, and Genetics</I>, 55(3):508--518, 5&nbsp;March 2004.
<A HREF="//dx.doi.org/10.1002/prot.20008">doi:10.1002/prot.20008</A>


<P>
<LI>
Rachel Karchin, Melissa Cline, Yael Mandel-Gutfreund, and Kevin Karplus.
Hidden Markov models that use predicted local structure for fold
  recognition: alphabets of backbone geometry.
<i>Proteins: Structure, Function, and Genetics</I>, 51(4):504--514,
  June 2003.
<A HREF="http://dx.doi.org/10.1002/prot.10369">doi:10.1002/prot.10369</A>

<P>
<LI>Karplus, K. and Karchin, R. and Draper, J. and Casper, J. and Mandel-Gutfreund, Y. and Diekhans, M. and Hughey, R.
``Combining local-structure, fold-recognition, and new-fold methods for protein structure prediction''
<I>Proteins: Structure Function and Genetics</I>53(S6):491-496,15 Oct 2003
<A HREF="http://dx.doi.org/10.1002/prot.10540">doi:10.1002/prot.10540</A>
</LI>

<P>
<LI>Rachel Karchin, Melissa Cline, Yael Mandel-Gutfreund, and Kevin Karplus.
``Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.''
<I>Proteins: Structure, Function, and Genetics</I>, 51(4):504--514, June 2003.
<A HREF="http://dx.doi.org/10.1002/prot.10369">doi:10.1002/prot.10369</A>
</LI>


<P>
<LI>Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R.
``What is the value added by human intervention in protein structure prediction?''
<I>Proteins: Structure Function and Genetics </I>45(S5):86-91,2001
<A HREF="http://dx.doi.org/10.1002/prot.10021">doi:10.1002/prot.10021</A>
</LI>
</UL>
    
}; # end of qq