InFilePrefix
OutFilePrefix

SetSeed		# Start from a random starting point.
		# Set the seed to a specific value if you need
		# deterministic behavior for debugging.

ReadAlphabet /projects/compbio/lib/alphabet/str.alphabet
ReadBackgroundProbs /projects/compbio/lib/alphabet/dunbrack-in-scop.backgrounds
time



ReadNeuralNet       t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net

#ReadParams /cse/faculty/karplus/dna/predict-2nd/testing/params/7-jul-05.params
#SetOverhang
#time

ReadToSet test
InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
Include dunbrack-in-scop-2005.t2k-str2

time
ReportNetQualityForTestTo quality-reports/t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net
TestNet
time