InFilePrefix OutFilePrefix SetSeed # Start from a random starting point. # Set the seed to a specific value if you need # deterministic behavior for debugging. ReadAlphabet /projects/compbio/lib/alphabet/bystroff.alphabet ReadBackgroundProbs /projects/compbio/lib/alphabet/dunbrack-in-scop.backgrounds time ReadNeuralNet t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net #ReadParams /cse/faculty/karplus/dna/predict-2nd/testing/params/7-jul-05.params #SetOverhang #time ReadToSet test InFilePrefix /cse/faculty/karplus/dna/predict-2nd/testing/training-data/ Include dunbrack-in-scop-2005.t04-bys time ReportNetQualityForTestTo quality-reports/t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.test TestNet time