# command:# Prefix for input files set to # command:# Prefix for output files set to # command:# Seed set to 1147697791 # command:# Read 5 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/two-spot-burial.alphabet # command:Unrecognized 1th alphabet rel_sa10 for BackgroundProbs that has no name Unrecognized 1th alphabet CB_burial_12_7 for BackgroundProbs that has no name Unrecognized 1th alphabet CB_burial_14_7 for BackgroundProbs that has no name Unrecognized 1th alphabet abs_sa7 for BackgroundProbs that has no name Unrecognized 1th alphabet alpha11 for BackgroundProbs that has no name Unrecognized 1th alphabet Bystroff for BackgroundProbs that has no name Unrecognized 1th alphabet chi1_3 for BackgroundProbs that has no name Unrecognized 1th alphabet dry_burial_6.5_7 for BackgroundProbs that has no name Unrecognized 1th alphabet dry_burial_8_7 for BackgroundProbs that has no name Unrecognized 1th alphabet dry_burial_12_7 for BackgroundProbs that has no name Unrecognized 1th alphabet DSSP for BackgroundProbs that has no name Unrecognized 1th alphabet EBGHSTL for BackgroundProbs that has no name Unrecognized 1th alphabet str for BackgroundProbs that has no name Unrecognized 1th alphabet str2 for BackgroundProbs that has no name Unrecognized 1th alphabet dssp_ehl2 for BackgroundProbs that has no name Unrecognized 1th alphabet STRIDE for BackgroundProbs that has no name Unrecognized 1th alphabet EBGHTL for BackgroundProbs that has no name Unrecognized 1th alphabet stride_ehl2 for BackgroundProbs that has no name Unrecognized 1th alphabet tco for BackgroundProbs that has no name Unrecognized 1th alphabet wet_burial_6.5_7 for BackgroundProbs that has no name Unrecognized 1th alphabet pb for BackgroundProbs that has no name Unrecognized 1th alphabet gamma_2 for BackgroundProbs that has no name Unrecognized 1th alphabet n_sep for BackgroundProbs that has no name Unrecognized 1th alphabet o_sep for BackgroundProbs that has no name Unrecognized 1th alphabet n_notor for BackgroundProbs that has no name Unrecognized 1th alphabet o_notor for BackgroundProbs that has no name Unrecognized 1th alphabet n_notor2 for BackgroundProbs that has no name Unrecognized 1th alphabet o_notor2 for BackgroundProbs that has no name # Read 0 alphabets and 3 BackgroundProbs from /projects/compbio/lib/alphabet/dunbrack-in-scop.backgrounds # command:CPU_time= 0.005999 sec, elapsed time= 0.091015 sec) # command:# Neural network set to t04-2621-IDGaaH13-3-13-7-13-9-13-11-near-backbone-11-seeded.net # command:# command:# Prefix for input files set to /cse/faculty/karplus/dna/predict-2nd/testing/training-data/ # command:# reading script from file dunbrack-in-scop-2005.t04-near-backbone-11 # Prefix for input files set to # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t04.a2m.gz # 4ubpA.t04.a2m with 158 sequences, total weight= 5.04017 avg weight= 0.0318998 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4ubpA/info/4ubpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t04.a2m.gz, have 100 columns in 1 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s0aA/nostruct-align/1s0aA.t04.a2m.gz # 1s0aA.t04.a2m with 3124 sequences, total weight= 3124 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01559 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s0aA/info/1s0aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s0aA/nostruct-align/1s0aA.t04.a2m.gz, have 528 columns in 2 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jnrA/nostruct-align/1jnrA.t04.a2m.gz # 1jnrA.t04.a2m with 2992 sequences, total weight= 2992 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.963698 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jnrA/info/1jnrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jnrA/nostruct-align/1jnrA.t04.a2m.gz, have 1170 columns in 3 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jkeA/nostruct-align/1jkeA.t04.a2m.gz # 1jkeA.t04.a2m with 160 sequences, total weight= 9.42161 avg weight= 0.0588851 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jkeA/info/1jkeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jkeA/nostruct-align/1jkeA.t04.a2m.gz, have 1315 columns in 4 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iukA/nostruct-align/1iukA.t04.a2m.gz # 1iukA.t04.a2m with 283 sequences, total weight= 95.4184 avg weight= 0.337168 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30214 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iukA/info/1iukA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iukA/nostruct-align/1iukA.t04.a2m.gz, have 1451 columns in 5 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t04.a2m.gz # 2gdm.t04.a2m with 1996 sequences, total weight= 1996 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.242 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2g/2gdm/info/2gdm.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t04.a2m.gz, have 1604 columns in 6 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t04.a2m.gz # 1ccwA.t04.a2m with 369 sequences, total weight= 58.3155 avg weight= 0.158037 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30092 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ccwA/info/1ccwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t04.a2m.gz, have 1741 columns in 7 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1senA/nostruct-align/1senA.t04.a2m.gz # 1senA.t04.a2m with 2348 sequences, total weight= 2348 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04522 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1senA/info/1senA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1senA/nostruct-align/1senA.t04.a2m.gz, have 1875 columns in 8 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtpA/nostruct-align/1mtpA.t04.a2m.gz # 1mtpA.t04.a2m with 996 sequences, total weight= 348.633 avg weight= 0.350033 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31842 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtpA/info/1mtpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mtpA/nostruct-align/1mtpA.t04.a2m.gz, have 2195 columns in 9 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ro0A/nostruct-align/1ro0A.t04.a2m.gz # 1ro0A.t04.a2m with 46 sequences, total weight= 43.6984 avg weight= 0.949966 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ro0A/info/1ro0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ro0A/nostruct-align/1ro0A.t04.a2m.gz, have 2405 columns in 10 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dlwA/nostruct-align/1dlwA.t04.a2m.gz # 1dlwA.t04.a2m with 107 sequences, total weight= 51.4491 avg weight= 0.480833 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dlwA/info/1dlwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dlwA/nostruct-align/1dlwA.t04.a2m.gz, have 2521 columns in 11 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7sA/nostruct-align/1o7sA.t04.a2m.gz # 1o7sA.t04.a2m with 3136 sequences, total weight= 14.1757 avg weight= 0.00452031 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7sA/info/1o7sA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o7sA/nostruct-align/1o7sA.t04.a2m.gz, have 2633 columns in 12 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t04.a2m.gz # 1ixh.t04.a2m with 377 sequences, total weight= 377 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29678 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ixh/info/1ixh.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t04.a2m.gz, have 2954 columns in 13 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pg4A/nostruct-align/1pg4A.t04.a2m.gz # 1pg4A.t04.a2m with 3656 sequences, total weight= 3656 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14473 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pg4A/info/1pg4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pg4A/nostruct-align/1pg4A.t04.a2m.gz, have 3587 columns in 14 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kwfA/nostruct-align/1kwfA.t04.a2m.gz # 1kwfA.t04.a2m with 89 sequences, total weight= 89 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24884 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kwfA/info/1kwfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kwfA/nostruct-align/1kwfA.t04.a2m.gz, have 3950 columns in 15 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t04.a2m.gz # 1b5eA.t04.a2m with 380 sequences, total weight= 42.4612 avg weight= 0.11174 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b5eA/info/1b5eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t04.a2m.gz, have 4191 columns in 16 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1km4A/nostruct-align/1km4A.t04.a2m.gz # 1km4A.t04.a2m with 878 sequences, total weight= 878 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14813 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1km4A/info/1km4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1km4A/nostruct-align/1km4A.t04.a2m.gz, have 4403 columns in 17 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gd0A/nostruct-align/1gd0A.t04.a2m.gz # 1gd0A.t04.a2m with 89 sequences, total weight= 30.5551 avg weight= 0.343316 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gd0A/info/1gd0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gd0A/nostruct-align/1gd0A.t04.a2m.gz, have 4521 columns in 18 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1ft5A/nostruct-align/1ft5A.t04.a2m.gz # 1ft5A.t04.a2m with 168 sequences, total weight= 168 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.785998 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1ft5A/info/1ft5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1ft5A/nostruct-align/1ft5A.t04.a2m.gz, have 4732 columns in 19 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ro7A/nostruct-align/1ro7A.t04.a2m.gz # 1ro7A.t04.a2m with 17 sequences, total weight= 3.4527 avg weight= 0.2031 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ro7A/info/1ro7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ro7A/nostruct-align/1ro7A.t04.a2m.gz, have 4990 columns in 20 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uj2A/nostruct-align/1uj2A.t04.a2m.gz # 1uj2A.t04.a2m with 2540 sequences, total weight= 2540 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.811136 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uj2A/info/1uj2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uj2A/nostruct-align/1uj2A.t04.a2m.gz, have 5203 columns in 21 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l7aA/nostruct-align/1l7aA.t04.a2m.gz # 1l7aA.t04.a2m with 3010 sequences, total weight= 3010 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.80363 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l7aA/info/1l7aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l7aA/nostruct-align/1l7aA.t04.a2m.gz, have 5521 columns in 22 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t04.a2m.gz # 1qgvA.t04.a2m with 33 sequences, total weight= 7.00369 avg weight= 0.212233 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qgvA/info/1qgvA.stride-mixed.near-backbone-11 WARNING: skipping a, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t04.a2m.gz, have 5651 columns in 23 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o6vA/nostruct-align/1o6vA.t04.a2m.gz # 1o6vA.t04.a2m with 3592 sequences, total weight= 3592 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.973686 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o6vA/info/1o6vA.stride-mixed.near-backbone-11 WARNING: skipping c, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1o/1o6vA/nostruct-align/1o6vA.t04.a2m.gz, have 6113 columns in 24 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fx2A/nostruct-align/1fx2A.t04.a2m.gz # 1fx2A.t04.a2m with 1037 sequences, total weight= 1037 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17356 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fx2A/info/1fx2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fx2A/nostruct-align/1fx2A.t04.a2m.gz, have 6348 columns in 25 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gx3A/nostruct-align/1gx3A.t04.a2m.gz # 1gx3A.t04.a2m with 119 sequences, total weight= 86.6792 avg weight= 0.728397 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gx3A/info/1gx3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gx3A/nostruct-align/1gx3A.t04.a2m.gz, have 6624 columns in 26 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhjA/nostruct-align/1jhjA.t04.a2m.gz # 1jhjA.t04.a2m with 61 sequences, total weight= 19.8999 avg weight= 0.326228 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhjA/info/1jhjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jhjA/nostruct-align/1jhjA.t04.a2m.gz, have 6785 columns in 27 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1luqA/nostruct-align/1luqA.t04.a2m.gz # 1luqA.t04.a2m with 65 sequences, total weight= 6.77018 avg weight= 0.104157 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1luqA/info/1luqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1luqA/nostruct-align/1luqA.t04.a2m.gz, have 6904 columns in 28 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t04.a2m.gz # 1bupA.t04.a2m with 2980 sequences, total weight= 455.457 avg weight= 0.152838 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.34132 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bupA/info/1bupA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t04.a2m.gz, have 7282 columns in 29 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugpB/nostruct-align/1ugpB.t04.a2m.gz # 1ugpB.t04.a2m with 42 sequences, total weight= 13.7665 avg weight= 0.327774 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugpB/info/1ugpB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ugpB/nostruct-align/1ugpB.t04.a2m.gz, have 7508 columns in 30 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p6oA/nostruct-align/1p6oA.t04.a2m.gz # 1p6oA.t04.a2m with 805 sequences, total weight= 805 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13136 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p6oA/info/1p6oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p6oA/nostruct-align/1p6oA.t04.a2m.gz, have 7664 columns in 31 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lm4A/nostruct-align/1lm4A.t04.a2m.gz # 1lm4A.t04.a2m with 319 sequences, total weight= 51.7755 avg weight= 0.162306 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30103 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lm4A/info/1lm4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lm4A/nostruct-align/1lm4A.t04.a2m.gz, have 7854 columns in 32 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i4uA/nostruct-align/1i4uA.t04.a2m.gz # 1i4uA.t04.a2m with 552 sequences, total weight= 552 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.987147 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i4uA/info/1i4uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i4uA/nostruct-align/1i4uA.t04.a2m.gz, have 8035 columns in 33 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1on2A/nostruct-align/1on2A.t04.a2m.gz # 1on2A.t04.a2m with 570 sequences, total weight= 570 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01541 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1on2A/info/1on2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1on2A/nostruct-align/1on2A.t04.a2m.gz, have 8170 columns in 34 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f3uA/nostruct-align/1f3uA.t04.a2m.gz # 1f3uA.t04.a2m with 25 sequences, total weight= 12.0424 avg weight= 0.481695 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f3uA/info/1f3uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f3uA/nostruct-align/1f3uA.t04.a2m.gz, have 8288 columns in 35 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m0wA/nostruct-align/1m0wA.t04.a2m.gz # 1m0wA.t04.a2m with 62 sequences, total weight= 15.3373 avg weight= 0.247375 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m0wA/info/1m0wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m0wA/nostruct-align/1m0wA.t04.a2m.gz, have 8769 columns in 36 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ubkL/nostruct-align/1ubkL.t04.a2m.gz # 1ubkL.t04.a2m with 575 sequences, total weight= 349.284 avg weight= 0.60745 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30466 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ubkL/info/1ubkL.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ubkL/nostruct-align/1ubkL.t04.a2m.gz, have 9303 columns in 37 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uekA/nostruct-align/1uekA.t04.a2m.gz # 1uekA.t04.a2m with 852 sequences, total weight= 852 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01117 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uekA/info/1uekA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uekA/nostruct-align/1uekA.t04.a2m.gz, have 9571 columns in 38 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2rA/nostruct-align/1g2rA.t04.a2m.gz # 1g2rA.t04.a2m with 80 sequences, total weight= 43.832 avg weight= 0.5479 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2rA/info/1g2rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g2rA/nostruct-align/1g2rA.t04.a2m.gz, have 9665 columns in 39 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5dA/nostruct-align/1s5dA.t04.a2m.gz # 1s5dA.t04.a2m with 70 sequences, total weight= 30.8938 avg weight= 0.441341 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5dA/info/1s5dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s5dA/nostruct-align/1s5dA.t04.a2m.gz, have 9883 columns in 40 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m40A/nostruct-align/1m40A.t04.a2m.gz # 1m40A.t04.a2m with 2277 sequences, total weight= 2277 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.978136 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m40A/info/1m40A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m40A/nostruct-align/1m40A.t04.a2m.gz, have 10146 columns in 41 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t04.a2m.gz # 1rb9.t04.a2m with 189 sequences, total weight= 9.84415 avg weight= 0.0520855 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rb9/info/1rb9.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t04.a2m.gz, have 10198 columns in 42 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t7rA/nostruct-align/1t7rA.t04.a2m.gz # 1t7rA.t04.a2m with 2038 sequences, total weight= 2038 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06854 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t7rA/info/1t7rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t7rA/nostruct-align/1t7rA.t04.a2m.gz, have 10448 columns in 43 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g5tA/nostruct-align/1g5tA.t04.a2m.gz # 1g5tA.t04.a2m with 144 sequences, total weight= 16.5094 avg weight= 0.114649 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g5tA/info/1g5tA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g5tA/nostruct-align/1g5tA.t04.a2m.gz, have 10605 columns in 44 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pj5A/nostruct-align/1pj5A.t04.a2m.gz # 1pj5A.t04.a2m with 2999 sequences, total weight= 2999 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.991334 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pj5A/info/1pj5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pj5A/nostruct-align/1pj5A.t04.a2m.gz, have 11432 columns in 45 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t04.a2m.gz # 1d2vA.t04.a2m with 142 sequences, total weight= 19.7659 avg weight= 0.139196 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2vA/info/1d2vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t04.a2m.gz, have 11536 columns in 46 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1osyA/nostruct-align/1osyA.t04.a2m.gz # 1osyA.t04.a2m with 4 sequences, total weight= 2.16273 avg weight= 0.540683 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1osyA/info/1osyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1osyA/nostruct-align/1osyA.t04.a2m.gz, have 11650 columns in 47 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t04.a2m.gz # 1qu9A.t04.a2m with 634 sequences, total weight= 267.532 avg weight= 0.421975 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31142 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qu9A/info/1qu9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t04.a2m.gz, have 11777 columns in 48 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t04.a2m.gz # 1sbp.t04.a2m with 1858 sequences, total weight= 1858 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.844519 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sbp/info/1sbp.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t04.a2m.gz, have 12086 columns in 49 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rqwA/nostruct-align/1rqwA.t04.a2m.gz # 1rqwA.t04.a2m with 272 sequences, total weight= 15.2707 avg weight= 0.0561424 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rqwA/info/1rqwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rqwA/nostruct-align/1rqwA.t04.a2m.gz, have 12293 columns in 50 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pvgA/nostruct-align/1pvgA.t04.a2m.gz # 1pvgA.t04.a2m with 2064 sequences, total weight= 140.759 avg weight= 0.068197 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31136 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pvgA/info/1pvgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pvgA/nostruct-align/1pvgA.t04.a2m.gz, have 12671 columns in 51 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkpA/nostruct-align/1vkpA.t04.a2m.gz # 1vkpA.t04.a2m with 90 sequences, total weight= 21.7605 avg weight= 0.241783 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkpA/info/1vkpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vkpA/nostruct-align/1vkpA.t04.a2m.gz, have 13036 columns in 52 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnC/nostruct-align/1hbnC.t04.a2m.gz # 1hbnC.t04.a2m with 25 sequences, total weight= 2.9733 avg weight= 0.118932 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnC/info/1hbnC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnC/nostruct-align/1hbnC.t04.a2m.gz, have 13283 columns in 53 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t04.a2m.gz # 1bm8.t04.a2m with 55 sequences, total weight= 10.2588 avg weight= 0.186524 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bm8/info/1bm8.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t04.a2m.gz, have 13382 columns in 54 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t04.a2m.gz # 2spcA.t04.a2m with 2005 sequences, total weight= 2005 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12583 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2spcA/info/2spcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t04.a2m.gz, have 13489 columns in 55 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1id0A/nostruct-align/1id0A.t04.a2m.gz # 1id0A.t04.a2m with 3021 sequences, total weight= 109.794 avg weight= 0.0363437 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33678 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1id0A/info/1id0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1id0A/nostruct-align/1id0A.t04.a2m.gz, have 13635 columns in 56 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rreA/nostruct-align/1rreA.t04.a2m.gz # 1rreA.t04.a2m with 609 sequences, total weight= 225.411 avg weight= 0.370133 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31248 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rreA/info/1rreA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rreA/nostruct-align/1rreA.t04.a2m.gz, have 13817 columns in 57 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t04.a2m.gz # 1a12A.t04.a2m with 490 sequences, total weight= 490 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02205 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a12A/info/1a12A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t04.a2m.gz, have 14218 columns in 58 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1ht6A/nostruct-align/1ht6A.t04.a2m.gz # 1ht6A.t04.a2m with 2386 sequences, total weight= 2386 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00594 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1ht6A/info/1ht6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1ht6A/nostruct-align/1ht6A.t04.a2m.gz, have 14622 columns in 59 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t04.a2m.gz # 2mcm.t04.a2m with 20 sequences, total weight= 3.5177 avg weight= 0.175885 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2m/2mcm/info/2mcm.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t04.a2m.gz, have 14734 columns in 60 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t04.a2m.gz # 1czpA.t04.a2m with 918 sequences, total weight= 918 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25362 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1czpA/info/1czpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t04.a2m.gz, have 14832 columns in 61 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ok7A/nostruct-align/1ok7A.t04.a2m.gz # 1ok7A.t04.a2m with 298 sequences, total weight= 79.5331 avg weight= 0.266889 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30238 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ok7A/info/1ok7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ok7A/nostruct-align/1ok7A.t04.a2m.gz, have 15198 columns in 62 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ojhA/nostruct-align/1ojhA.t04.a2m.gz # 1ojhA.t04.a2m with 4 sequences, total weight= 2.52342 avg weight= 0.630854 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ojhA/info/1ojhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ojhA/nostruct-align/1ojhA.t04.a2m.gz, have 15250 columns in 63 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pe1A/nostruct-align/1pe1A.t04.a2m.gz # 1pe1A.t04.a2m with 413 sequences, total weight= 31.7611 avg weight= 0.0769034 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pe1A/info/1pe1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pe1A/nostruct-align/1pe1A.t04.a2m.gz, have 15508 columns in 64 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t04.a2m.gz # 2pvbA.t04.a2m with 2472 sequences, total weight= 2472 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24795 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2pvbA/info/2pvbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t04.a2m.gz, have 15615 columns in 65 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t04.a2m.gz # 1a2pA.t04.a2m with 86 sequences, total weight= 8.52759 avg weight= 0.099158 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a2pA/info/1a2pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t04.a2m.gz, have 15723 columns in 66 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jcdA/nostruct-align/1jcdA.t04.a2m.gz # 1jcdA.t04.a2m with 18 sequences, total weight= 2.53036 avg weight= 0.140576 8 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jcdA/info/1jcdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jcdA/nostruct-align/1jcdA.t04.a2m.gz, have 15773 columns in 67 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nu4A/nostruct-align/1nu4A.t04.a2m.gz # 1nu4A.t04.a2m with 5587 sequences, total weight= 5587 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20886 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nu4A/info/1nu4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nu4A/nostruct-align/1nu4A.t04.a2m.gz, have 15864 columns in 68 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fn9A/nostruct-align/1fn9A.t04.a2m.gz # 1fn9A.t04.a2m with 54 sequences, total weight= 8.13831 avg weight= 0.150709 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fn9A/info/1fn9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fn9A/nostruct-align/1fn9A.t04.a2m.gz, have 16229 columns in 69 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j77A/nostruct-align/1j77A.t04.a2m.gz # 1j77A.t04.a2m with 139 sequences, total weight= 104.154 avg weight= 0.749308 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30053 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j77A/info/1j77A.stride-mixed.near-backbone-11 WARNING: skipping f, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1j/1j77A/nostruct-align/1j77A.t04.a2m.gz, have 16428 columns in 70 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n1jB/nostruct-align/1n1jB.t04.a2m.gz # 1n1jB.t04.a2m with 129 sequences, total weight= 15.8812 avg weight= 0.12311 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n1jB/info/1n1jB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n1jB/nostruct-align/1n1jB.t04.a2m.gz, have 16506 columns in 71 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t04.a2m.gz # 1btkA.t04.a2m with 271 sequences, total weight= 136.761 avg weight= 0.504651 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30121 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1btkA/info/1btkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t04.a2m.gz, have 16666 columns in 72 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxrA/nostruct-align/1hxrA.t04.a2m.gz # 1hxrA.t04.a2m with 21 sequences, total weight= 8.71626 avg weight= 0.41506 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxrA/info/1hxrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hxrA/nostruct-align/1hxrA.t04.a2m.gz, have 16773 columns in 73 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j27A/nostruct-align/1j27A.t04.a2m.gz # 1j27A.t04.a2m with 32 sequences, total weight= 16.806 avg weight= 0.525187 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j27A/info/1j27A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j27A/nostruct-align/1j27A.t04.a2m.gz, have 16871 columns in 74 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq1A/nostruct-align/1kq1A.t04.a2m.gz # 1kq1A.t04.a2m with 89 sequences, total weight= 5.03059 avg weight= 0.0565235 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq1A/info/1kq1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kq1A/nostruct-align/1kq1A.t04.a2m.gz, have 16931 columns in 75 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ktgA/nostruct-align/1ktgA.t04.a2m.gz # 1ktgA.t04.a2m with 2112 sequences, total weight= 2112 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.887844 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ktgA/info/1ktgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1ktgA/nostruct-align/1ktgA.t04.a2m.gz, have 17068 columns in 76 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ockA/nostruct-align/1ockA.t04.a2m.gz # 1ockA.t04.a2m with 770 sequences, total weight= 211.958 avg weight= 0.27527 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31506 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ockA/info/1ockA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ockA/nostruct-align/1ockA.t04.a2m.gz, have 17480 columns in 77 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g61A/nostruct-align/1g61A.t04.a2m.gz # 1g61A.t04.a2m with 68 sequences, total weight= 11.9357 avg weight= 0.175525 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g61A/info/1g61A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g61A/nostruct-align/1g61A.t04.a2m.gz, have 17705 columns in 78 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f60B/nostruct-align/1f60B.t04.a2m.gz # 1f60B.t04.a2m with 116 sequences, total weight= 6.31427 avg weight= 0.0544333 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f60B/info/1f60B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f60B/nostruct-align/1f60B.t04.a2m.gz, have 17795 columns in 79 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t04.a2m.gz # 1vcc.t04.a2m with 29 sequences, total weight= 4.08469 avg weight= 0.140851 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vcc/info/1vcc.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t04.a2m.gz, have 17872 columns in 80 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vc4A/nostruct-align/1vc4A.t04.a2m.gz # 1vc4A.t04.a2m with 664 sequences, total weight= 664 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26689 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vc4A/info/1vc4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vc4A/nostruct-align/1vc4A.t04.a2m.gz, have 18126 columns in 81 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxdA/nostruct-align/1oxdA.t04.a2m.gz # 1oxdA.t04.a2m with 283 sequences, total weight= 14.4834 avg weight= 0.051178 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxdA/info/1oxdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oxdA/nostruct-align/1oxdA.t04.a2m.gz, have 18352 columns in 82 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7zA/nostruct-align/1q7zA.t04.a2m.gz # 1q7zA.t04.a2m with 666 sequences, total weight= 252.669 avg weight= 0.379384 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30557 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7zA/info/1q7zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q7zA/nostruct-align/1q7zA.t04.a2m.gz, have 18911 columns in 83 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6pA/nostruct-align/1l6pA.t04.a2m.gz # 1l6pA.t04.a2m with 82 sequences, total weight= 18.3061 avg weight= 0.223245 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6pA/info/1l6pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l6pA/nostruct-align/1l6pA.t04.a2m.gz, have 19032 columns in 84 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sjwA/nostruct-align/1sjwA.t04.a2m.gz # 1sjwA.t04.a2m with 185 sequences, total weight= 185 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01965 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sjwA/info/1sjwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sjwA/nostruct-align/1sjwA.t04.a2m.gz, have 19174 columns in 85 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llmC/nostruct-align/1llmC.t04.a2m.gz # 1llmC.t04.a2m with 11118 sequences, total weight= 182.887 avg weight= 0.0164496 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33519 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llmC/info/1llmC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1llmC/nostruct-align/1llmC.t04.a2m.gz, have 19261 columns in 86 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1su8A/nostruct-align/1su8A.t04.a2m.gz # 1su8A.t04.a2m with 129 sequences, total weight= 41.2097 avg weight= 0.319455 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1su8A/info/1su8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1su8A/nostruct-align/1su8A.t04.a2m.gz, have 19894 columns in 87 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t04.a2m.gz # 1mba.t04.a2m with 1962 sequences, total weight= 1962 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29206 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mba/info/1mba.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t04.a2m.gz, have 20040 columns in 88 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbjA/nostruct-align/1pbjA.t04.a2m.gz # 1pbjA.t04.a2m with 2320 sequences, total weight= 2320 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09735 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbjA/info/1pbjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pbjA/nostruct-align/1pbjA.t04.a2m.gz, have 20160 columns in 89 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vm9A/nostruct-align/1vm9A.t04.a2m.gz # 1vm9A.t04.a2m with 1386 sequences, total weight= 1386 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14754 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vm9A/info/1vm9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vm9A/nostruct-align/1vm9A.t04.a2m.gz, have 20269 columns in 90 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uscA/nostruct-align/1uscA.t04.a2m.gz # 1uscA.t04.a2m with 420 sequences, total weight= 420 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1724 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uscA/info/1uscA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uscA/nostruct-align/1uscA.t04.a2m.gz, have 20447 columns in 91 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fg7A/nostruct-align/1fg7A.t04.a2m.gz # 1fg7A.t04.a2m with 3002 sequences, total weight= 3002 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06095 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fg7A/info/1fg7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fg7A/nostruct-align/1fg7A.t04.a2m.gz, have 20801 columns in 92 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j2rA/nostruct-align/1j2rA.t04.a2m.gz # 1j2rA.t04.a2m with 596 sequences, total weight= 596 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12613 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j2rA/info/1j2rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j2rA/nostruct-align/1j2rA.t04.a2m.gz, have 20989 columns in 93 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbyA/nostruct-align/1pbyA.t04.a2m.gz # 1pbyA.t04.a2m with 7 sequences, total weight= 3.6578 avg weight= 0.522543 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbyA/info/1pbyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pbyA/nostruct-align/1pbyA.t04.a2m.gz, have 21478 columns in 94 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t04.a2m.gz # 1mun.t04.a2m with 787 sequences, total weight= 787 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15889 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mun/info/1mun.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t04.a2m.gz, have 21703 columns in 95 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qopB/nostruct-align/1qopB.t04.a2m.gz # 1qopB.t04.a2m with 1670 sequences, total weight= 1670 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16642 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qopB/info/1qopB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qopB/nostruct-align/1qopB.t04.a2m.gz, have 22093 columns in 96 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54B/nostruct-align/1v54B.t04.a2m.gz # 1v54B.t04.a2m with 3001 sequences, total weight= 4.93083 avg weight= 0.00164306 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54B/info/1v54B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v54B/nostruct-align/1v54B.t04.a2m.gz, have 22320 columns in 97 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kjwA/nostruct-align/1kjwA.t04.a2m.gz # 1kjwA.t04.a2m with 1903 sequences, total weight= 1903 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07207 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kjwA/info/1kjwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kjwA/nostruct-align/1kjwA.t04.a2m.gz, have 22612 columns in 98 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l3lA/nostruct-align/1l3lA.t04.a2m.gz # 1l3lA.t04.a2m with 2980 sequences, total weight= 2980 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.978613 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l3lA/info/1l3lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l3lA/nostruct-align/1l3lA.t04.a2m.gz, have 22845 columns in 99 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwmA/nostruct-align/1gwmA.t04.a2m.gz # 1gwmA.t04.a2m with 5 sequences, total weight= 2.69018 avg weight= 0.538035 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwmA/info/1gwmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gwmA/nostruct-align/1gwmA.t04.a2m.gz, have 22998 columns in 100 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0dA/nostruct-align/1d0dA.t04.a2m.gz # 1d0dA.t04.a2m with 6 sequences, total weight= 2.20965 avg weight= 0.368274 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0dA/info/1d0dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d0dA/nostruct-align/1d0dA.t04.a2m.gz, have 23058 columns in 101 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjvA/nostruct-align/1vjvA.t04.a2m.gz # 1vjvA.t04.a2m with 1161 sequences, total weight= 1161 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09395 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjvA/info/1vjvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vjvA/nostruct-align/1vjvA.t04.a2m.gz, have 23425 columns in 102 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t04.a2m.gz # 1fvkA.t04.a2m with 665 sequences, total weight= 665 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.954251 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fvkA/info/1fvkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t04.a2m.gz, have 23613 columns in 103 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t04.a2m.gz # 1pmi.t04.a2m with 156 sequences, total weight= 86.6742 avg weight= 0.555604 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30045 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pmi/info/1pmi.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t04.a2m.gz, have 24053 columns in 104 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ibyA/nostruct-align/1ibyA.t04.a2m.gz # 1ibyA.t04.a2m with 3 sequences, total weight= 1.8414 avg weight= 0.6138 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ibyA/info/1ibyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ibyA/nostruct-align/1ibyA.t04.a2m.gz, have 24165 columns in 105 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o82A/nostruct-align/1o82A.t04.a2m.gz # 1o82A.t04.a2m with 5 sequences, total weight= 1.83217 avg weight= 0.366434 8 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o82A/info/1o82A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o82A/nostruct-align/1o82A.t04.a2m.gz, have 24235 columns in 106 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uaiA/nostruct-align/1uaiA.t04.a2m.gz # 1uaiA.t04.a2m with 40 sequences, total weight= 28.6553 avg weight= 0.716382 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uaiA/info/1uaiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uaiA/nostruct-align/1uaiA.t04.a2m.gz, have 24458 columns in 107 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t04.a2m.gz # 1brt.t04.a2m with 3002 sequences, total weight= 3002 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.808769 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1brt/info/1brt.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t04.a2m.gz, have 24735 columns in 108 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrjB/nostruct-align/1nrjB.t04.a2m.gz # 1nrjB.t04.a2m with 3159 sequences, total weight= 1338.95 avg weight= 0.423852 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31951 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrjB/info/1nrjB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nrjB/nostruct-align/1nrjB.t04.a2m.gz, have 24926 columns in 109 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqqA/nostruct-align/1oqqA.t04.a2m.gz # 1oqqA.t04.a2m with 474 sequences, total weight= 344.277 avg weight= 0.726323 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30476 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqqA/info/1oqqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oqqA/nostruct-align/1oqqA.t04.a2m.gz, have 25032 columns in 110 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jr8A/nostruct-align/1jr8A.t04.a2m.gz # 1jr8A.t04.a2m with 121 sequences, total weight= 68.6273 avg weight= 0.567168 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3004 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jr8A/info/1jr8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jr8A/nostruct-align/1jr8A.t04.a2m.gz, have 25137 columns in 111 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvjA/nostruct-align/1gvjA.t04.a2m.gz # 1gvjA.t04.a2m with 413 sequences, total weight= 39.1726 avg weight= 0.0948489 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30093 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvjA/info/1gvjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gvjA/nostruct-align/1gvjA.t04.a2m.gz, have 25278 columns in 112 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t04.a2m.gz # 1d4tA.t04.a2m with 1342 sequences, total weight= 374.838 avg weight= 0.279313 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32621 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4tA/info/1d4tA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t04.a2m.gz, have 25382 columns in 113 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j1nA/nostruct-align/1j1nA.t04.a2m.gz # 1j1nA.t04.a2m with 1583 sequences, total weight= 1583 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.873579 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j1nA/info/1j1nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j1nA/nostruct-align/1j1nA.t04.a2m.gz, have 25874 columns in 114 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfzA/nostruct-align/1tfzA.t04.a2m.gz # 1tfzA.t04.a2m with 1250 sequences, total weight= 1250 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11532 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tfzA/info/1tfzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tfzA/nostruct-align/1tfzA.t04.a2m.gz, have 26238 columns in 115 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexA/nostruct-align/1eexA.t04.a2m.gz # 1eexA.t04.a2m with 22 sequences, total weight= 3.01519 avg weight= 0.137054 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexA/info/1eexA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eexA/nostruct-align/1eexA.t04.a2m.gz, have 26789 columns in 116 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mg7A/nostruct-align/1mg7A.t04.a2m.gz # 1mg7A.t04.a2m with 7 sequences, total weight= 3.49514 avg weight= 0.499305 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mg7A/info/1mg7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mg7A/nostruct-align/1mg7A.t04.a2m.gz, have 27140 columns in 117 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1us5A/nostruct-align/1us5A.t04.a2m.gz # 1us5A.t04.a2m with 2954 sequences, total weight= 2954 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.817851 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1us5A/info/1us5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1us5A/nostruct-align/1us5A.t04.a2m.gz, have 27437 columns in 118 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t04.a2m.gz # 1atg.t04.a2m with 2011 sequences, total weight= 2011 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.842728 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1atg/info/1atg.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t04.a2m.gz, have 27668 columns in 119 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f74A/nostruct-align/1f74A.t04.a2m.gz # 1f74A.t04.a2m with 570 sequences, total weight= 549.778 avg weight= 0.964522 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3007 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f74A/info/1f74A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f74A/nostruct-align/1f74A.t04.a2m.gz, have 27961 columns in 120 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t04.a2m.gz # 1mtyG.t04.a2m with 10 sequences, total weight= 3.70529 avg weight= 0.370529 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyG/info/1mtyG.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t04.a2m.gz, have 28123 columns in 121 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62B/nostruct-align/1n62B.t04.a2m.gz # 1n62B.t04.a2m with 746 sequences, total weight= 288.572 avg weight= 0.386826 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30849 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62B/info/1n62B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n62B/nostruct-align/1n62B.t04.a2m.gz, have 28927 columns in 122 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ntvA/nostruct-align/1ntvA.t04.a2m.gz # 1ntvA.t04.a2m with 424 sequences, total weight= 424 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19998 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ntvA/info/1ntvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1ntvA/nostruct-align/1ntvA.t04.a2m.gz, have 29079 columns in 123 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxyA/nostruct-align/1gxyA.t04.a2m.gz # 1gxyA.t04.a2m with 98 sequences, total weight= 9.57583 avg weight= 0.0977125 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxyA/info/1gxyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gxyA/nostruct-align/1gxyA.t04.a2m.gz, have 29302 columns in 124 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f2tA/nostruct-align/1f2tA.t04.a2m.gz # 1f2tA.t04.a2m with 3073 sequences, total weight= 3073 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18749 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f2tA/info/1f2tA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f2tA/nostruct-align/1f2tA.t04.a2m.gz, have 29447 columns in 125 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hh8A/nostruct-align/1hh8A.t04.a2m.gz # 1hh8A.t04.a2m with 4282 sequences, total weight= 4282 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.813414 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hh8A/info/1hh8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hh8A/nostruct-align/1hh8A.t04.a2m.gz, have 29639 columns in 126 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uylA/nostruct-align/1uylA.t04.a2m.gz # 1uylA.t04.a2m with 580 sequences, total weight= 43.0482 avg weight= 0.074221 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30033 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uylA/info/1uylA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uylA/nostruct-align/1uylA.t04.a2m.gz, have 29846 columns in 127 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s29A/nostruct-align/1s29A.t04.a2m.gz # 1s29A.t04.a2m with 151 sequences, total weight= 25.0334 avg weight= 0.165784 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s29A/info/1s29A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s29A/nostruct-align/1s29A.t04.a2m.gz, have 29938 columns in 128 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kyhA/nostruct-align/1kyhA.t04.a2m.gz # 1kyhA.t04.a2m with 1704 sequences, total weight= 1704 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.955962 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kyhA/info/1kyhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kyhA/nostruct-align/1kyhA.t04.a2m.gz, have 30206 columns in 129 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nu0A/nostruct-align/1nu0A.t04.a2m.gz # 1nu0A.t04.a2m with 197 sequences, total weight= 39.7313 avg weight= 0.201682 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30042 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nu0A/info/1nu0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nu0A/nostruct-align/1nu0A.t04.a2m.gz, have 30337 columns in 130 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t04.a2m.gz # 1dciA.t04.a2m with 1620 sequences, total weight= 1620 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16973 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dciA/info/1dciA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t04.a2m.gz, have 30612 columns in 131 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k6kA/nostruct-align/1k6kA.t04.a2m.gz # 1k6kA.t04.a2m with 280 sequences, total weight= 107.08 avg weight= 0.382427 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3039 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k6kA/info/1k6kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k6kA/nostruct-align/1k6kA.t04.a2m.gz, have 30754 columns in 132 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ezgA/nostruct-align/1ezgA.t04.a2m.gz # 1ezgA.t04.a2m with 27 sequences, total weight= 2.59865 avg weight= 0.0962464 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ezgA/info/1ezgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ezgA/nostruct-align/1ezgA.t04.a2m.gz, have 30836 columns in 133 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1woqA/nostruct-align/1woqA.t04.a2m.gz # 1woqA.t04.a2m with 1218 sequences, total weight= 1218 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1477 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1woqA/info/1woqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1woqA/nostruct-align/1woqA.t04.a2m.gz, have 31089 columns in 134 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62C/nostruct-align/1n62C.t04.a2m.gz # 1n62C.t04.a2m with 445 sequences, total weight= 104.441 avg weight= 0.234698 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30532 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62C/info/1n62C.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n62C/nostruct-align/1n62C.t04.a2m.gz, have 31375 columns in 135 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lv7A/nostruct-align/1lv7A.t04.a2m.gz # 1lv7A.t04.a2m with 3895 sequences, total weight= 3895 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18157 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lv7A/info/1lv7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lv7A/nostruct-align/1lv7A.t04.a2m.gz, have 31626 columns in 136 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t3iA/nostruct-align/1t3iA.t04.a2m.gz # 1t3iA.t04.a2m with 3003 sequences, total weight= 3003 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.975491 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t3iA/info/1t3iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t3iA/nostruct-align/1t3iA.t04.a2m.gz, have 32032 columns in 137 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s9uA/nostruct-align/1s9uA.t04.a2m.gz # 1s9uA.t04.a2m with 162 sequences, total weight= 162 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11231 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s9uA/info/1s9uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s9uA/nostruct-align/1s9uA.t04.a2m.gz, have 32233 columns in 138 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t04.a2m.gz # 2por.t04.a2m with 1126 sequences, total weight= 1061.86 avg weight= 0.943034 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30152 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2por/info/2por.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t04.a2m.gz, have 32534 columns in 139 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eluA/nostruct-align/1eluA.t04.a2m.gz # 1eluA.t04.a2m with 3003 sequences, total weight= 3003 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.983259 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eluA/info/1eluA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eluA/nostruct-align/1eluA.t04.a2m.gz, have 32915 columns in 140 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tzvA/nostruct-align/1tzvA.t04.a2m.gz # 1tzvA.t04.a2m with 362 sequences, total weight= 362 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26521 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tzvA/info/1tzvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tzvA/nostruct-align/1tzvA.t04.a2m.gz, have 33056 columns in 141 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j8bA/nostruct-align/1j8bA.t04.a2m.gz # 1j8bA.t04.a2m with 167 sequences, total weight= 25.1738 avg weight= 0.150741 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j8bA/info/1j8bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j8bA/nostruct-align/1j8bA.t04.a2m.gz, have 33148 columns in 142 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n2eA/nostruct-align/1n2eA.t04.a2m.gz # 1n2eA.t04.a2m with 178 sequences, total weight= 14.9715 avg weight= 0.0841095 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n2eA/info/1n2eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n2eA/nostruct-align/1n2eA.t04.a2m.gz, have 33436 columns in 143 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nuyA/nostruct-align/1nuyA.t04.a2m.gz # 1nuyA.t04.a2m with 799 sequences, total weight= 799 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20366 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nuyA/info/1nuyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nuyA/nostruct-align/1nuyA.t04.a2m.gz, have 33764 columns in 144 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t04.a2m.gz # 1nscA.t04.a2m with 907 sequences, total weight= 5.3061 avg weight= 0.00585017 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nscA/info/1nscA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t04.a2m.gz, have 34154 columns in 145 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k0mA/nostruct-align/1k0mA.t04.a2m.gz # 1k0mA.t04.a2m with 2544 sequences, total weight= 2544 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.956463 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k0mA/info/1k0mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k0mA/nostruct-align/1k0mA.t04.a2m.gz, have 34389 columns in 146 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hx0A/nostruct-align/1hx0A.t04.a2m.gz # 1hx0A.t04.a2m with 2394 sequences, total weight= 2394 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00949 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hx0A/info/1hx0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hx0A/nostruct-align/1hx0A.t04.a2m.gz, have 34885 columns in 147 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j2lA/nostruct-align/1j2lA.t04.a2m.gz # 1j2lA.t04.a2m with 451 sequences, total weight= 10.263 avg weight= 0.022756 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j2lA/info/1j2lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j2lA/nostruct-align/1j2lA.t04.a2m.gz, have 34953 columns in 148 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t04.a2m.gz # 1dfmA.t04.a2m with 4 sequences, total weight= 2.452 avg weight= 0.613001 8 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dfmA/info/1dfmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t04.a2m.gz, have 35176 columns in 149 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ekgA/nostruct-align/1ekgA.t04.a2m.gz # 1ekgA.t04.a2m with 84 sequences, total weight= 22.0548 avg weight= 0.262558 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ekgA/info/1ekgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ekgA/nostruct-align/1ekgA.t04.a2m.gz, have 35295 columns in 150 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v33A/nostruct-align/1v33A.t04.a2m.gz # 1v33A.t04.a2m with 94 sequences, total weight= 94 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24503 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v33A/info/1v33A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v33A/nostruct-align/1v33A.t04.a2m.gz, have 35641 columns in 151 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1es5A/nostruct-align/1es5A.t04.a2m.gz # 1es5A.t04.a2m with 1542 sequences, total weight= 1542 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11461 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1es5A/info/1es5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1es5A/nostruct-align/1es5A.t04.a2m.gz, have 35901 columns in 152 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t04.a2m.gz # 1b9mA.t04.a2m with 2908 sequences, total weight= 2908 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06131 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b9mA/info/1b9mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t04.a2m.gz, have 36159 columns in 153 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k55A/nostruct-align/1k55A.t04.a2m.gz # 1k55A.t04.a2m with 2464 sequences, total weight= 2464 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13523 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k55A/info/1k55A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k55A/nostruct-align/1k55A.t04.a2m.gz, have 36404 columns in 154 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m7yA/nostruct-align/1m7yA.t04.a2m.gz # 1m7yA.t04.a2m with 3002 sequences, total weight= 3002 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.994981 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m7yA/info/1m7yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m7yA/nostruct-align/1m7yA.t04.a2m.gz, have 36828 columns in 155 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uk8A/nostruct-align/1uk8A.t04.a2m.gz # 1uk8A.t04.a2m with 3002 sequences, total weight= 3002 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.848732 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uk8A/info/1uk8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uk8A/nostruct-align/1uk8A.t04.a2m.gz, have 37099 columns in 156 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hz6A/nostruct-align/1hz6A.t04.a2m.gz # 1hz6A.t04.a2m with 30 sequences, total weight= 3.12579 avg weight= 0.104193 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hz6A/info/1hz6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hz6A/nostruct-align/1hz6A.t04.a2m.gz, have 37166 columns in 157 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t04.a2m.gz # 1qauA.t04.a2m with 2913 sequences, total weight= 2913 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10638 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qauA/info/1qauA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t04.a2m.gz, have 37278 columns in 158 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8eA/nostruct-align/1g8eA.t04.a2m.gz # 1g8eA.t04.a2m with 30 sequences, total weight= 5.73045 avg weight= 0.191015 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8eA/info/1g8eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g8eA/nostruct-align/1g8eA.t04.a2m.gz, have 37376 columns in 159 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ne2A/nostruct-align/1ne2A.t04.a2m.gz # 1ne2A.t04.a2m with 3028 sequences, total weight= 3028 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.852766 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ne2A/info/1ne2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1ne2A/nostruct-align/1ne2A.t04.a2m.gz, have 37552 columns in 160 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uv7A/nostruct-align/1uv7A.t04.a2m.gz # 1uv7A.t04.a2m with 23 sequences, total weight= 8.02371 avg weight= 0.348857 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uv7A/info/1uv7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uv7A/nostruct-align/1uv7A.t04.a2m.gz, have 37628 columns in 161 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6cA/nostruct-align/1e6cA.t04.a2m.gz # 1e6cA.t04.a2m with 3208 sequences, total weight= 3208 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.958472 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6cA/info/1e6cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e6cA/nostruct-align/1e6cA.t04.a2m.gz, have 37798 columns in 162 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t04.a2m.gz # 1sluA.t04.a2m with 32 sequences, total weight= 5.15525 avg weight= 0.161102 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sluA/info/1sluA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t04.a2m.gz, have 37929 columns in 163 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ooyA/nostruct-align/1ooyA.t04.a2m.gz # 1ooyA.t04.a2m with 605 sequences, total weight= 558.994 avg weight= 0.923958 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30114 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ooyA/info/1ooyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ooyA/nostruct-align/1ooyA.t04.a2m.gz, have 38392 columns in 164 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ojrA/nostruct-align/1ojrA.t04.a2m.gz # 1ojrA.t04.a2m with 493 sequences, total weight= 493 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15787 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ojrA/info/1ojrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ojrA/nostruct-align/1ojrA.t04.a2m.gz, have 38666 columns in 165 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t04.a2m.gz # 1bs0A.t04.a2m with 3006 sequences, total weight= 3006 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08502 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bs0A/info/1bs0A.stride-mixed.near-backbone-11 WARNING: skipping e, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t04.a2m.gz, have 39048 columns in 166 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vh5A/nostruct-align/1vh5A.t04.a2m.gz # 1vh5A.t04.a2m with 766 sequences, total weight= 766 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.943817 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vh5A/info/1vh5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vh5A/nostruct-align/1vh5A.t04.a2m.gz, have 39186 columns in 167 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sbxA/nostruct-align/1sbxA.t04.a2m.gz # 1sbxA.t04.a2m with 102 sequences, total weight= 7.75427 avg weight= 0.0760222 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sbxA/info/1sbxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sbxA/nostruct-align/1sbxA.t04.a2m.gz, have 39292 columns in 168 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vljA/nostruct-align/1vljA.t04.a2m.gz # 1vljA.t04.a2m with 1074 sequences, total weight= 1074 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19516 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vljA/info/1vljA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vljA/nostruct-align/1vljA.t04.a2m.gz, have 39690 columns in 169 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t04.a2m.gz # 3sil.t04.a2m with 423 sequences, total weight= 423 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.882792 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3sil/info/3sil.stride-mixed.near-backbone-11 WARNING: skipping b, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t04.a2m.gz, have 40068 columns in 170 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t04.a2m.gz # 1cv8.t04.a2m with 14 sequences, total weight= 2.76288 avg weight= 0.197349 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cv8/info/1cv8.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t04.a2m.gz, have 40241 columns in 171 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4pA/nostruct-align/1h4pA.t04.a2m.gz # 1h4pA.t04.a2m with 2054 sequences, total weight= 2054 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.949235 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4pA/info/1h4pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h4pA/nostruct-align/1h4pA.t04.a2m.gz, have 40649 columns in 172 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j3wA/nostruct-align/1j3wA.t04.a2m.gz # 1j3wA.t04.a2m with 13 sequences, total weight= 6.83827 avg weight= 0.526021 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j3wA/info/1j3wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j3wA/nostruct-align/1j3wA.t04.a2m.gz, have 40783 columns in 173 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnB/nostruct-align/1hbnB.t04.a2m.gz # 1hbnB.t04.a2m with 28 sequences, total weight= 3.12943 avg weight= 0.111765 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnB/info/1hbnB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnB/nostruct-align/1hbnB.t04.a2m.gz, have 41225 columns in 174 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t04.a2m.gz # 1dmhA.t04.a2m with 325 sequences, total weight= 141.569 avg weight= 0.435598 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30155 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dmhA/info/1dmhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t04.a2m.gz, have 41534 columns in 175 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qy1A/nostruct-align/1qy1A.t04.a2m.gz # 1qy1A.t04.a2m with 520 sequences, total weight= 520 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03379 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qy1A/info/1qy1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qy1A/nostruct-align/1qy1A.t04.a2m.gz, have 41691 columns in 176 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xffA/nostruct-align/1xffA.t04.a2m.gz # 1xffA.t04.a2m with 1322 sequences, total weight= 1322 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19117 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xffA/info/1xffA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xffA/nostruct-align/1xffA.t04.a2m.gz, have 41929 columns in 177 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1el5A/nostruct-align/1el5A.t04.a2m.gz # 1el5A.t04.a2m with 2999 sequences, total weight= 2999 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.790828 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1el5A/info/1el5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1el5A/nostruct-align/1el5A.t04.a2m.gz, have 42314 columns in 178 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gv9A/nostruct-align/1gv9A.t04.a2m.gz # 1gv9A.t04.a2m with 587 sequences, total weight= 311.844 avg weight= 0.53125 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30862 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gv9A/info/1gv9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gv9A/nostruct-align/1gv9A.t04.a2m.gz, have 42537 columns in 179 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t04.a2m.gz # 1koe.t04.a2m with 76 sequences, total weight= 16.2949 avg weight= 0.214407 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1koe/info/1koe.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t04.a2m.gz, have 42709 columns in 180 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mfgA/nostruct-align/1mfgA.t04.a2m.gz # 1mfgA.t04.a2m with 2855 sequences, total weight= 2855 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2543 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mfgA/info/1mfgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mfgA/nostruct-align/1mfgA.t04.a2m.gz, have 42804 columns in 181 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pv5A/nostruct-align/1pv5A.t04.a2m.gz # 1pv5A.t04.a2m with 32 sequences, total weight= 23.9312 avg weight= 0.747849 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pv5A/info/1pv5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pv5A/nostruct-align/1pv5A.t04.a2m.gz, have 43065 columns in 182 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1svsA/nostruct-align/1svsA.t04.a2m.gz # 1svsA.t04.a2m with 1344 sequences, total weight= 125.949 avg weight= 0.0937118 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30439 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1svsA/info/1svsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1svsA/nostruct-align/1svsA.t04.a2m.gz, have 43381 columns in 183 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t04.a2m.gz # 1dfuP.t04.a2m with 151 sequences, total weight= 29.7861 avg weight= 0.197259 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dfuP/info/1dfuP.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t04.a2m.gz, have 43475 columns in 184 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnuA/nostruct-align/1gnuA.t04.a2m.gz # 1gnuA.t04.a2m with 107 sequences, total weight= 8.16428 avg weight= 0.0763017 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnuA/info/1gnuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gnuA/nostruct-align/1gnuA.t04.a2m.gz, have 43592 columns in 185 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tjyA/nostruct-align/1tjyA.t04.a2m.gz # 1tjyA.t04.a2m with 2125 sequences, total weight= 2125 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.983805 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tjyA/info/1tjyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tjyA/nostruct-align/1tjyA.t04.a2m.gz, have 43908 columns in 186 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vj2A/nostruct-align/1vj2A.t04.a2m.gz # 1vj2A.t04.a2m with 1795 sequences, total weight= 1795 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.796894 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vj2A/info/1vj2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vj2A/nostruct-align/1vj2A.t04.a2m.gz, have 44022 columns in 187 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwrA/nostruct-align/1qwrA.t04.a2m.gz # 1qwrA.t04.a2m with 161 sequences, total weight= 116.815 avg weight= 0.725558 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30066 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwrA/info/1qwrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qwrA/nostruct-align/1qwrA.t04.a2m.gz, have 44337 columns in 188 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smoA/nostruct-align/1smoA.t04.a2m.gz # 1smoA.t04.a2m with 3159 sequences, total weight= 9.03905 avg weight= 0.00286136 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smoA/info/1smoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1smoA/nostruct-align/1smoA.t04.a2m.gz, have 44450 columns in 189 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gcqC/nostruct-align/1gcqC.t04.a2m.gz # 1gcqC.t04.a2m with 201 sequences, total weight= 25.4933 avg weight= 0.126832 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gcqC/info/1gcqC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gcqC/nostruct-align/1gcqC.t04.a2m.gz, have 44519 columns in 190 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwkA/nostruct-align/1uwkA.t04.a2m.gz # 1uwkA.t04.a2m with 103 sequences, total weight= 6.11049 avg weight= 0.0593252 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwkA/info/1uwkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uwkA/nostruct-align/1uwkA.t04.a2m.gz, have 45073 columns in 191 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nr0A/nostruct-align/1nr0A.t04.a2m.gz # 1nr0A.t04.a2m with 3074 sequences, total weight= 3074 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.913378 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nr0A/info/1nr0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nr0A/nostruct-align/1nr0A.t04.a2m.gz, have 45683 columns in 192 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vyrA/nostruct-align/1vyrA.t04.a2m.gz # 1vyrA.t04.a2m with 752 sequences, total weight= 271.515 avg weight= 0.361058 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31102 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vyrA/info/1vyrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vyrA/nostruct-align/1vyrA.t04.a2m.gz, have 46046 columns in 193 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nlnA/nostruct-align/1nlnA.t04.a2m.gz # 1nlnA.t04.a2m with 47 sequences, total weight= 5.38408 avg weight= 0.114555 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nlnA/info/1nlnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nlnA/nostruct-align/1nlnA.t04.a2m.gz, have 46249 columns in 194 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi7A/nostruct-align/1oi7A.t04.a2m.gz # 1oi7A.t04.a2m with 497 sequences, total weight= 116.99 avg weight= 0.235393 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.304 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi7A/info/1oi7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oi7A/nostruct-align/1oi7A.t04.a2m.gz, have 46519 columns in 195 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdhA/nostruct-align/1hdhA.t04.a2m.gz # 1hdhA.t04.a2m with 1420 sequences, total weight= 1420 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.884515 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdhA/info/1hdhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hdhA/nostruct-align/1hdhA.t04.a2m.gz, have 47044 columns in 196 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l7lA/nostruct-align/1l7lA.t04.a2m.gz # 1l7lA.t04.a2m with 5 sequences, total weight= 2.48268 avg weight= 0.496535 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l7lA/info/1l7lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l7lA/nostruct-align/1l7lA.t04.a2m.gz, have 47165 columns in 197 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v77A/nostruct-align/1v77A.t04.a2m.gz # 1v77A.t04.a2m with 68 sequences, total weight= 68 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16983 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v77A/info/1v77A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v77A/nostruct-align/1v77A.t04.a2m.gz, have 47367 columns in 198 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sdsA/nostruct-align/1sdsA.t04.a2m.gz # 1sdsA.t04.a2m with 479 sequences, total weight= 231.378 avg weight= 0.483043 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30666 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sdsA/info/1sdsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sdsA/nostruct-align/1sdsA.t04.a2m.gz, have 47482 columns in 199 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kolA/nostruct-align/1kolA.t04.a2m.gz # 1kolA.t04.a2m with 3032 sequences, total weight= 3032 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22671 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kolA/info/1kolA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kolA/nostruct-align/1kolA.t04.a2m.gz, have 47878 columns in 200 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9dA/nostruct-align/1r9dA.t04.a2m.gz # 1r9dA.t04.a2m with 191 sequences, total weight= 52.5913 avg weight= 0.275347 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9dA/info/1r9dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r9dA/nostruct-align/1r9dA.t04.a2m.gz, have 48664 columns in 201 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dusA/nostruct-align/1dusA.t04.a2m.gz # 1dusA.t04.a2m with 3062 sequences, total weight= 3062 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.822985 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dusA/info/1dusA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dusA/nostruct-align/1dusA.t04.a2m.gz, have 48858 columns in 202 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1viaA/nostruct-align/1viaA.t04.a2m.gz # 1viaA.t04.a2m with 3179 sequences, total weight= 3179 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.91224 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1viaA/info/1viaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1viaA/nostruct-align/1viaA.t04.a2m.gz, have 49019 columns in 203 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l9lA/nostruct-align/1l9lA.t04.a2m.gz # 1l9lA.t04.a2m with 12 sequences, total weight= 3.73271 avg weight= 0.311059 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l9lA/info/1l9lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l9lA/nostruct-align/1l9lA.t04.a2m.gz, have 49093 columns in 204 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t04.a2m.gz # 1c3pA.t04.a2m with 528 sequences, total weight= 154.106 avg weight= 0.291867 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30753 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c3pA/info/1c3pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t04.a2m.gz, have 49465 columns in 205 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlpA/nostruct-align/1vlpA.t04.a2m.gz # 1vlpA.t04.a2m with 290 sequences, total weight= 108.097 avg weight= 0.372749 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30112 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlpA/info/1vlpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vlpA/nostruct-align/1vlpA.t04.a2m.gz, have 49883 columns in 206 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t04.a2m.gz # 1hfeS.t04.a2m with 18 sequences, total weight= 7.37846 avg weight= 0.409915 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hfeS/info/1hfeS.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t04.a2m.gz, have 49971 columns in 207 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h03P/nostruct-align/1h03P.t04.a2m.gz # 1h03P.t04.a2m with 2394 sequences, total weight= 2394 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17019 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h03P/info/1h03P.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h03P/nostruct-align/1h03P.t04.a2m.gz, have 50096 columns in 208 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjpA/nostruct-align/1vjpA.t04.a2m.gz # 1vjpA.t04.a2m with 127 sequences, total weight= 21.5347 avg weight= 0.169565 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjpA/info/1vjpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vjpA/nostruct-align/1vjpA.t04.a2m.gz, have 50478 columns in 209 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w4xA/nostruct-align/1w4xA.t04.a2m.gz # 1w4xA.t04.a2m with 3007 sequences, total weight= 3007 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04261 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w4xA/info/1w4xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w4xA/nostruct-align/1w4xA.t04.a2m.gz, have 51011 columns in 210 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o66A/nostruct-align/1o66A.t04.a2m.gz # 1o66A.t04.a2m with 177 sequences, total weight= 11.7387 avg weight= 0.0663204 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o66A/info/1o66A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o66A/nostruct-align/1o66A.t04.a2m.gz, have 51260 columns in 211 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6lA/nostruct-align/1h6lA.t04.a2m.gz # 1h6lA.t04.a2m with 40 sequences, total weight= 19.1788 avg weight= 0.47947 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6lA/info/1h6lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h6lA/nostruct-align/1h6lA.t04.a2m.gz, have 51613 columns in 212 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vicA/nostruct-align/1vicA.t04.a2m.gz # 1vicA.t04.a2m with 2417 sequences, total weight= 2417 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.992968 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vicA/info/1vicA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vicA/nostruct-align/1vicA.t04.a2m.gz, have 51868 columns in 213 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t04.a2m.gz # 2bbkL.t04.a2m with 19 sequences, total weight= 2.77758 avg weight= 0.146188 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bbkL/info/2bbkL.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t04.a2m.gz, have 51993 columns in 214 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t04.a2m.gz # 3chbD.t04.a2m with 42 sequences, total weight= 2.48525 avg weight= 0.0591727 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3c/3chbD/info/3chbD.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t04.a2m.gz, have 52096 columns in 215 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1my7A/nostruct-align/1my7A.t04.a2m.gz # 1my7A.t04.a2m with 197 sequences, total weight= 12.7615 avg weight= 0.0647791 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1my7A/info/1my7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1my7A/nostruct-align/1my7A.t04.a2m.gz, have 52203 columns in 216 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t04.a2m.gz # 1nbcA.t04.a2m with 128 sequences, total weight= 40.2152 avg weight= 0.314181 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nbcA/info/1nbcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t04.a2m.gz, have 52358 columns in 217 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6t1/nostruct-align/1t6t1.t04.a2m.gz # 1t6t1.t04.a2m with 3 sequences, total weight= 1.86782 avg weight= 0.622606 6 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6t1/info/1t6t1.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t6t1/nostruct-align/1t6t1.t04.a2m.gz, have 52466 columns in 218 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ek6A/nostruct-align/1ek6A.t04.a2m.gz # 1ek6A.t04.a2m with 3014 sequences, total weight= 3014 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10215 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ek6A/info/1ek6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ek6A/nostruct-align/1ek6A.t04.a2m.gz, have 52812 columns in 219 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gz8A/nostruct-align/1gz8A.t04.a2m.gz # 1gz8A.t04.a2m with 3071 sequences, total weight= 62.2152 avg weight= 0.020259 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31247 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gz8A/info/1gz8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gz8A/nostruct-align/1gz8A.t04.a2m.gz, have 53103 columns in 220 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fjhA/nostruct-align/1fjhA.t04.a2m.gz # 1fjhA.t04.a2m with 3029 sequences, total weight= 144.549 avg weight= 0.0477215 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31801 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fjhA/info/1fjhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fjhA/nostruct-align/1fjhA.t04.a2m.gz, have 53339 columns in 221 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t04.a2m.gz # 1cb0A.t04.a2m with 716 sequences, total weight= 716 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05255 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cb0A/info/1cb0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t04.a2m.gz, have 53607 columns in 222 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1obfO/nostruct-align/1obfO.t04.a2m.gz # 1obfO.t04.a2m with 1806 sequences, total weight= 31.3359 avg weight= 0.017351 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1obfO/info/1obfO.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1obfO/nostruct-align/1obfO.t04.a2m.gz, have 53942 columns in 223 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1evlA/nostruct-align/1evlA.t04.a2m.gz # 1evlA.t04.a2m with 1772 sequences, total weight= 1772 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10269 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1evlA/info/1evlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1evlA/nostruct-align/1evlA.t04.a2m.gz, have 54343 columns in 224 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyoA/nostruct-align/1hyoA.t04.a2m.gz # 1hyoA.t04.a2m with 507 sequences, total weight= 210.686 avg weight= 0.415555 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3021 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyoA/info/1hyoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hyoA/nostruct-align/1hyoA.t04.a2m.gz, have 54759 columns in 225 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nytA/nostruct-align/1nytA.t04.a2m.gz # 1nytA.t04.a2m with 887 sequences, total weight= 887 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16538 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nytA/info/1nytA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nytA/nostruct-align/1nytA.t04.a2m.gz, have 55030 columns in 226 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pu6A/nostruct-align/1pu6A.t04.a2m.gz # 1pu6A.t04.a2m with 794 sequences, total weight= 794 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14141 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pu6A/info/1pu6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pu6A/nostruct-align/1pu6A.t04.a2m.gz, have 55247 columns in 227 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qw9A/nostruct-align/1qw9A.t04.a2m.gz # 1qw9A.t04.a2m with 223 sequences, total weight= 223 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.959604 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qw9A/info/1qw9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qw9A/nostruct-align/1qw9A.t04.a2m.gz, have 55744 columns in 228 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqpA/nostruct-align/1kqpA.t04.a2m.gz # 1kqpA.t04.a2m with 1927 sequences, total weight= 1927 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.901555 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqpA/info/1kqpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kqpA/nostruct-align/1kqpA.t04.a2m.gz, have 56015 columns in 229 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mb3A/nostruct-align/1mb3A.t04.a2m.gz # 1mb3A.t04.a2m with 3272 sequences, total weight= 100.612 avg weight= 0.0307493 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33146 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mb3A/info/1mb3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mb3A/nostruct-align/1mb3A.t04.a2m.gz, have 56132 columns in 230 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oalA/nostruct-align/1oalA.t04.a2m.gz # 1oalA.t04.a2m with 553 sequences, total weight= 35.678 avg weight= 0.0645172 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oalA/info/1oalA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oalA/nostruct-align/1oalA.t04.a2m.gz, have 56283 columns in 231 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mixA/nostruct-align/1mixA.t04.a2m.gz # 1mixA.t04.a2m with 607 sequences, total weight= 607 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18015 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mixA/info/1mixA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mixA/nostruct-align/1mixA.t04.a2m.gz, have 56489 columns in 232 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1jA/nostruct-align/1p1jA.t04.a2m.gz # 1p1jA.t04.a2m with 127 sequences, total weight= 22.9691 avg weight= 0.180859 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1jA/info/1p1jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p1jA/nostruct-align/1p1jA.t04.a2m.gz, have 57014 columns in 233 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oh0A/nostruct-align/1oh0A.t04.a2m.gz # 1oh0A.t04.a2m with 484 sequences, total weight= 484 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.861724 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oh0A/info/1oh0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oh0A/nostruct-align/1oh0A.t04.a2m.gz, have 57139 columns in 234 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t04.a2m.gz # 1byi.t04.a2m with 2968 sequences, total weight= 2968 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.944223 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1byi/info/1byi.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t04.a2m.gz, have 57363 columns in 235 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t04.a2m.gz # 4ubpB.t04.a2m with 211 sequences, total weight= 7.00503 avg weight= 0.0331992 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4ubpB/info/4ubpB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t04.a2m.gz, have 57485 columns in 236 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fnlA/nostruct-align/1fnlA.t04.a2m.gz # 1fnlA.t04.a2m with 8069 sequences, total weight= 8069 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.95338 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fnlA/info/1fnlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fnlA/nostruct-align/1fnlA.t04.a2m.gz, have 57658 columns in 237 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t0tV/nostruct-align/1t0tV.t04.a2m.gz # 1t0tV.t04.a2m with 47 sequences, total weight= 27.323 avg weight= 0.581341 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t0tV/info/1t0tV.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t0tV/nostruct-align/1t0tV.t04.a2m.gz, have 57901 columns in 238 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6uA/nostruct-align/1e6uA.t04.a2m.gz # 1e6uA.t04.a2m with 3012 sequences, total weight= 3012 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10805 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6uA/info/1e6uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e6uA/nostruct-align/1e6uA.t04.a2m.gz, have 58216 columns in 239 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q5yA/nostruct-align/1q5yA.t04.a2m.gz # 1q5yA.t04.a2m with 49 sequences, total weight= 11.3962 avg weight= 0.232575 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q5yA/info/1q5yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q5yA/nostruct-align/1q5yA.t04.a2m.gz, have 58300 columns in 240 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fk5A/nostruct-align/1fk5A.t04.a2m.gz # 1fk5A.t04.a2m with 283 sequences, total weight= 64.71 avg weight= 0.228657 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30159 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fk5A/info/1fk5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fk5A/nostruct-align/1fk5A.t04.a2m.gz, have 58393 columns in 241 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0rI/nostruct-align/1r0rI.t04.a2m.gz # 1r0rI.t04.a2m with 291 sequences, total weight= 20.4313 avg weight= 0.0702105 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0rI/info/1r0rI.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r0rI/nostruct-align/1r0rI.t04.a2m.gz, have 58444 columns in 242 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k4iA/nostruct-align/1k4iA.t04.a2m.gz # 1k4iA.t04.a2m with 263 sequences, total weight= 13.0473 avg weight= 0.0496097 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k4iA/info/1k4iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k4iA/nostruct-align/1k4iA.t04.a2m.gz, have 58660 columns in 243 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t04.a2m.gz # 1lopA.t04.a2m with 990 sequences, total weight= 68.81 avg weight= 0.069505 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30148 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lopA/info/1lopA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t04.a2m.gz, have 58824 columns in 244 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e7wA/nostruct-align/1e7wA.t04.a2m.gz # 1e7wA.t04.a2m with 3027 sequences, total weight= 127.671 avg weight= 0.0421775 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31094 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e7wA/info/1e7wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e7wA/nostruct-align/1e7wA.t04.a2m.gz, have 59091 columns in 245 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t61A/nostruct-align/1t61A.t04.a2m.gz # 1t61A.t04.a2m with 152 sequences, total weight= 4.26643 avg weight= 0.0280686 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t61A/info/1t61A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t61A/nostruct-align/1t61A.t04.a2m.gz, have 59314 columns in 246 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t04.a2m.gz # 1a8d.t04.a2m with 113 sequences, total weight= 37.5814 avg weight= 0.332578 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a8d/info/1a8d.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t04.a2m.gz, have 59766 columns in 247 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nthA/nostruct-align/1nthA.t04.a2m.gz # 1nthA.t04.a2m with 20 sequences, total weight= 3.11024 avg weight= 0.155512 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nthA/info/1nthA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nthA/nostruct-align/1nthA.t04.a2m.gz, have 60223 columns in 248 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kgdA/nostruct-align/1kgdA.t04.a2m.gz # 1kgdA.t04.a2m with 1156 sequences, total weight= 1156 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15567 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kgdA/info/1kgdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kgdA/nostruct-align/1kgdA.t04.a2m.gz, have 60398 columns in 249 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n0qA/nostruct-align/1n0qA.t04.a2m.gz # 1n0qA.t04.a2m with 7060 sequences, total weight= 7060 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22353 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n0qA/info/1n0qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n0qA/nostruct-align/1n0qA.t04.a2m.gz, have 60489 columns in 250 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1px5A/nostruct-align/1px5A.t04.a2m.gz # 1px5A.t04.a2m with 113 sequences, total weight= 15.2651 avg weight= 0.135089 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1px5A/info/1px5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1px5A/nostruct-align/1px5A.t04.a2m.gz, have 60818 columns in 251 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jzgA/nostruct-align/1jzgA.t04.a2m.gz # 1jzgA.t04.a2m with 75 sequences, total weight= 6.73542 avg weight= 0.0898056 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jzgA/info/1jzgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jzgA/nostruct-align/1jzgA.t04.a2m.gz, have 60946 columns in 252 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i1jA/nostruct-align/1i1jA.t04.a2m.gz # 1i1jA.t04.a2m with 28 sequences, total weight= 5.05651 avg weight= 0.18059 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i1jA/info/1i1jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i1jA/nostruct-align/1i1jA.t04.a2m.gz, have 61052 columns in 253 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h0hB/nostruct-align/1h0hB.t04.a2m.gz # 1h0hB.t04.a2m with 1433 sequences, total weight= 1433 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0374 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h0hB/info/1h0hB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h0hB/nostruct-align/1h0hB.t04.a2m.gz, have 61266 columns in 254 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jm1A/nostruct-align/1jm1A.t04.a2m.gz # 1jm1A.t04.a2m with 768 sequences, total weight= 768 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02975 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jm1A/info/1jm1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jm1A/nostruct-align/1jm1A.t04.a2m.gz, have 61468 columns in 255 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t04.a2m.gz # 1fna.t04.a2m with 6582 sequences, total weight= 6582 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06155 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fna/info/1fna.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t04.a2m.gz, have 61559 columns in 256 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lniA/nostruct-align/1lniA.t04.a2m.gz # 1lniA.t04.a2m with 84 sequences, total weight= 9.38288 avg weight= 0.111701 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lniA/info/1lniA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lniA/nostruct-align/1lniA.t04.a2m.gz, have 61655 columns in 257 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t04.a2m.gz # 1b9wA.t04.a2m with 196 sequences, total weight= 4.44231 avg weight= 0.0226649 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b9wA/info/1b9wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t04.a2m.gz, have 61744 columns in 258 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eu3A/nostruct-align/1eu3A.t04.a2m.gz # 1eu3A.t04.a2m with 238 sequences, total weight= 44.2417 avg weight= 0.185889 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eu3A/info/1eu3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eu3A/nostruct-align/1eu3A.t04.a2m.gz, have 61954 columns in 259 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7cA/nostruct-align/1k7cA.t04.a2m.gz # 1k7cA.t04.a2m with 665 sequences, total weight= 665 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.84128 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7cA/info/1k7cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k7cA/nostruct-align/1k7cA.t04.a2m.gz, have 62187 columns in 260 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t8kA/nostruct-align/1t8kA.t04.a2m.gz # 1t8kA.t04.a2m with 395 sequences, total weight= 32.7233 avg weight= 0.0828437 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t8kA/info/1t8kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t8kA/nostruct-align/1t8kA.t04.a2m.gz, have 62264 columns in 261 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1ml4A/nostruct-align/1ml4A.t04.a2m.gz # 1ml4A.t04.a2m with 655 sequences, total weight= 38.8114 avg weight= 0.0592541 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1ml4A/info/1ml4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1ml4A/nostruct-align/1ml4A.t04.a2m.gz, have 62571 columns in 262 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1fA/nostruct-align/1m1fA.t04.a2m.gz # 1m1fA.t04.a2m with 146 sequences, total weight= 83.09 avg weight= 0.56911 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30089 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1fA/info/1m1fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m1fA/nostruct-align/1m1fA.t04.a2m.gz, have 62678 columns in 263 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n40A/nostruct-align/1n40A.t04.a2m.gz # 1n40A.t04.a2m with 3014 sequences, total weight= 3014 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16607 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n40A/info/1n40A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n40A/nostruct-align/1n40A.t04.a2m.gz, have 63072 columns in 264 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qhoA/nostruct-align/1qhoA.t04.a2m.gz # 1qhoA.t04.a2m with 2419 sequences, total weight= 2419 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18974 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qhoA/info/1qhoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qhoA/nostruct-align/1qhoA.t04.a2m.gz, have 63758 columns in 265 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7qA/nostruct-align/1o7qA.t04.a2m.gz # 1o7qA.t04.a2m with 184 sequences, total weight= 7.75725 avg weight= 0.0421589 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7qA/info/1o7qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o7qA/nostruct-align/1o7qA.t04.a2m.gz, have 64045 columns in 266 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p3cA/nostruct-align/1p3cA.t04.a2m.gz # 1p3cA.t04.a2m with 3071 sequences, total weight= 1273 avg weight= 0.414522 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32518 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p3cA/info/1p3cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p3cA/nostruct-align/1p3cA.t04.a2m.gz, have 64260 columns in 267 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t04.a2m.gz # 1yacA.t04.a2m with 596 sequences, total weight= 596 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14006 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yacA/info/1yacA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t04.a2m.gz, have 64464 columns in 268 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mgqA/nostruct-align/1mgqA.t04.a2m.gz # 1mgqA.t04.a2m with 398 sequences, total weight= 102.79 avg weight= 0.258268 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30461 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mgqA/info/1mgqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mgqA/nostruct-align/1mgqA.t04.a2m.gz, have 64538 columns in 269 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e58A/nostruct-align/1e58A.t04.a2m.gz # 1e58A.t04.a2m with 1161 sequences, total weight= 1161 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02897 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e58A/info/1e58A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e58A/nostruct-align/1e58A.t04.a2m.gz, have 64785 columns in 270 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq3A/nostruct-align/1kq3A.t04.a2m.gz # 1kq3A.t04.a2m with 841 sequences, total weight= 841 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15511 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq3A/info/1kq3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kq3A/nostruct-align/1kq3A.t04.a2m.gz, have 65149 columns in 271 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w3iA/nostruct-align/1w3iA.t04.a2m.gz # 1w3iA.t04.a2m with 637 sequences, total weight= 637 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2798 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w3iA/info/1w3iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w3iA/nostruct-align/1w3iA.t04.a2m.gz, have 65442 columns in 272 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxzA/nostruct-align/1uxzA.t04.a2m.gz # 1uxzA.t04.a2m with 169 sequences, total weight= 90.8161 avg weight= 0.537373 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30091 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxzA/info/1uxzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uxzA/nostruct-align/1uxzA.t04.a2m.gz, have 65573 columns in 273 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kugA/nostruct-align/1kugA.t04.a2m.gz # 1kugA.t04.a2m with 838 sequences, total weight= 838 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24156 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kugA/info/1kugA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kugA/nostruct-align/1kugA.t04.a2m.gz, have 65774 columns in 274 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t04.a2m.gz # 1vfyA.t04.a2m with 397 sequences, total weight= 36.8406 avg weight= 0.0927976 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30225 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vfyA/info/1vfyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t04.a2m.gz, have 65841 columns in 275 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r12A/nostruct-align/1r12A.t04.a2m.gz # 1r12A.t04.a2m with 22 sequences, total weight= 6.19057 avg weight= 0.28139 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r12A/info/1r12A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r12A/nostruct-align/1r12A.t04.a2m.gz, have 66092 columns in 276 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h72C/nostruct-align/1h72C.t04.a2m.gz # 1h72C.t04.a2m with 876 sequences, total weight= 876 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01613 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h72C/info/1h72C.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h72C/nostruct-align/1h72C.t04.a2m.gz, have 66388 columns in 277 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1olrA/nostruct-align/1olrA.t04.a2m.gz # 1olrA.t04.a2m with 75 sequences, total weight= 28.7042 avg weight= 0.382723 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1olrA/info/1olrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1olrA/nostruct-align/1olrA.t04.a2m.gz, have 66612 columns in 278 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nycA/nostruct-align/1nycA.t04.a2m.gz # 1nycA.t04.a2m with 6 sequences, total weight= 2.41659 avg weight= 0.402765 8 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nycA/info/1nycA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nycA/nostruct-align/1nycA.t04.a2m.gz, have 66723 columns in 279 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t04.a2m.gz # 1dqgA.t04.a2m with 31 sequences, total weight= 8.80893 avg weight= 0.284159 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqgA/info/1dqgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t04.a2m.gz, have 66857 columns in 280 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gs5A/nostruct-align/1gs5A.t04.a2m.gz # 1gs5A.t04.a2m with 1179 sequences, total weight= 1179 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18539 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gs5A/info/1gs5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gs5A/nostruct-align/1gs5A.t04.a2m.gz, have 67115 columns in 281 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lfwA/nostruct-align/1lfwA.t04.a2m.gz # 1lfwA.t04.a2m with 1721 sequences, total weight= 1721 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.988901 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lfwA/info/1lfwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lfwA/nostruct-align/1lfwA.t04.a2m.gz, have 67583 columns in 282 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lwbA/nostruct-align/1lwbA.t04.a2m.gz # 1lwbA.t04.a2m with 16 sequences, total weight= 5.61913 avg weight= 0.351195 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lwbA/info/1lwbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lwbA/nostruct-align/1lwbA.t04.a2m.gz, have 67705 columns in 283 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t04.a2m.gz # 7odcA.t04.a2m with 972 sequences, total weight= 972 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08922 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/7o/7odcA/info/7odcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t04.a2m.gz, have 68092 columns in 284 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t04.a2m.gz # 1nls.t04.a2m with 793 sequences, total weight= 136.93 avg weight= 0.172673 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30331 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nls/info/1nls.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t04.a2m.gz, have 68329 columns in 285 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pq7A/nostruct-align/1pq7A.t04.a2m.gz # 1pq7A.t04.a2m with 3062 sequences, total weight= 339.714 avg weight= 0.110945 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.34618 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pq7A/info/1pq7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pq7A/nostruct-align/1pq7A.t04.a2m.gz, have 68553 columns in 286 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d8wA/nostruct-align/1d8wA.t04.a2m.gz # 1d8wA.t04.a2m with 182 sequences, total weight= 44.2157 avg weight= 0.242943 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d8wA/info/1d8wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d8wA/nostruct-align/1d8wA.t04.a2m.gz, have 68955 columns in 287 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtzA/nostruct-align/1mtzA.t04.a2m.gz # 1mtzA.t04.a2m with 3005 sequences, total weight= 3005 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.786034 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtzA/info/1mtzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mtzA/nostruct-align/1mtzA.t04.a2m.gz, have 69245 columns in 288 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t04.a2m.gz # 1lam.t04.a2m with 318 sequences, total weight= 44.8867 avg weight= 0.141153 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30073 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lam/info/1lam.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t04.a2m.gz, have 69729 columns in 289 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ltzA/nostruct-align/1ltzA.t04.a2m.gz # 1ltzA.t04.a2m with 144 sequences, total weight= 16.0824 avg weight= 0.111684 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ltzA/info/1ltzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1ltzA/nostruct-align/1ltzA.t04.a2m.gz, have 70003 columns in 290 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t04.a2m.gz # 1nar.t04.a2m with 1142 sequences, total weight= 1142 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11995 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nar/info/1nar.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t04.a2m.gz, have 70292 columns in 291 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t04.a2m.gz # 1mof.t04.a2m with 577 sequences, total weight= 6.93862 avg weight= 0.0120253 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mof/info/1mof.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t04.a2m.gz, have 70345 columns in 292 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kyfA/nostruct-align/1kyfA.t04.a2m.gz # 1kyfA.t04.a2m with 49 sequences, total weight= 21.654 avg weight= 0.441917 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kyfA/info/1kyfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kyfA/nostruct-align/1kyfA.t04.a2m.gz, have 70592 columns in 293 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t04.a2m.gz # 1dozA.t04.a2m with 246 sequences, total weight= 48.249 avg weight= 0.196134 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30042 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dozA/info/1dozA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t04.a2m.gz, have 70901 columns in 294 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lfpA/nostruct-align/1lfpA.t04.a2m.gz # 1lfpA.t04.a2m with 232 sequences, total weight= 21.0396 avg weight= 0.0906879 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lfpA/info/1lfpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lfpA/nostruct-align/1lfpA.t04.a2m.gz, have 71144 columns in 295 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t04.a2m.gz # 3htsB.t04.a2m with 201 sequences, total weight= 16.9833 avg weight= 0.084494 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3h/3htsB/info/3htsB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t04.a2m.gz, have 71226 columns in 296 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hnjA/nostruct-align/1hnjA.t04.a2m.gz # 1hnjA.t04.a2m with 3291 sequences, total weight= 3291 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14438 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hnjA/info/1hnjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hnjA/nostruct-align/1hnjA.t04.a2m.gz, have 71543 columns in 297 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m55A/nostruct-align/1m55A.t04.a2m.gz # 1m55A.t04.a2m with 26 sequences, total weight= 10.0891 avg weight= 0.388041 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m55A/info/1m55A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m55A/nostruct-align/1m55A.t04.a2m.gz, have 71736 columns in 298 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfbA/nostruct-align/1jfbA.t04.a2m.gz # 1jfbA.t04.a2m with 3013 sequences, total weight= 3013 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16547 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfbA/info/1jfbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jfbA/nostruct-align/1jfbA.t04.a2m.gz, have 72135 columns in 299 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7iA/nostruct-align/1o7iA.t04.a2m.gz # 1o7iA.t04.a2m with 117 sequences, total weight= 117 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25883 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7iA/info/1o7iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o7iA/nostruct-align/1o7iA.t04.a2m.gz, have 72250 columns in 300 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n93X/nostruct-align/1n93X.t04.a2m.gz # 1n93X.t04.a2m with 39 sequences, total weight= 4.56102 avg weight= 0.116949 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n93X/info/1n93X.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n93X/nostruct-align/1n93X.t04.a2m.gz, have 72585 columns in 301 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t04.a2m.gz # 1qq5A.t04.a2m with 2418 sequences, total weight= 2418 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.800513 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qq5A/info/1qq5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t04.a2m.gz, have 72830 columns in 302 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f8eA/nostruct-align/1f8eA.t04.a2m.gz # 1f8eA.t04.a2m with 907 sequences, total weight= 5.32496 avg weight= 0.00587096 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f8eA/info/1f8eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f8eA/nostruct-align/1f8eA.t04.a2m.gz, have 73218 columns in 303 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9zA/nostruct-align/1f9zA.t04.a2m.gz # 1f9zA.t04.a2m with 2297 sequences, total weight= 2297 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.898869 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9zA/info/1f9zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f9zA/nostruct-align/1f9zA.t04.a2m.gz, have 73346 columns in 304 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5rA/nostruct-align/1r5rA.t04.a2m.gz # 1r5rA.t04.a2m with 345 sequences, total weight= 345 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01269 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5rA/info/1r5rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r5rA/nostruct-align/1r5rA.t04.a2m.gz, have 73463 columns in 305 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uoyA/nostruct-align/1uoyA.t04.a2m.gz # 1uoyA.t04.a2m with 2 sequences, total weight= 1.5846 avg weight= 0.792299 5 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uoyA/info/1uoyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uoyA/nostruct-align/1uoyA.t04.a2m.gz, have 73527 columns in 306 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kzqA/nostruct-align/1kzqA.t04.a2m.gz # 1kzqA.t04.a2m with 59 sequences, total weight= 27.598 avg weight= 0.467764 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kzqA/info/1kzqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kzqA/nostruct-align/1kzqA.t04.a2m.gz, have 73780 columns in 307 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ow1A/nostruct-align/1ow1A.t04.a2m.gz # 1ow1A.t04.a2m with 52 sequences, total weight= 6.7704 avg weight= 0.1302 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ow1A/info/1ow1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ow1A/nostruct-align/1ow1A.t04.a2m.gz, have 73947 columns in 308 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1nB/nostruct-align/1m1nB.t04.a2m.gz # 1m1nB.t04.a2m with 640 sequences, total weight= 640 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27577 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1nB/info/1m1nB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m1nB/nostruct-align/1m1nB.t04.a2m.gz, have 74469 columns in 309 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iirA/nostruct-align/1iirA.t04.a2m.gz # 1iirA.t04.a2m with 2965 sequences, total weight= 2965 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.818727 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iirA/info/1iirA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iirA/nostruct-align/1iirA.t04.a2m.gz, have 74851 columns in 310 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j54A/nostruct-align/1j54A.t04.a2m.gz # 1j54A.t04.a2m with 971 sequences, total weight= 971 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07904 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j54A/info/1j54A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j54A/nostruct-align/1j54A.t04.a2m.gz, have 75025 columns in 311 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qw2A/nostruct-align/1qw2A.t04.a2m.gz # 1qw2A.t04.a2m with 16 sequences, total weight= 6.37726 avg weight= 0.398579 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qw2A/info/1qw2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qw2A/nostruct-align/1qw2A.t04.a2m.gz, have 75127 columns in 312 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkfA/nostruct-align/1vkfA.t04.a2m.gz # 1vkfA.t04.a2m with 35 sequences, total weight= 8.94094 avg weight= 0.255455 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkfA/info/1vkfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vkfA/nostruct-align/1vkfA.t04.a2m.gz, have 75299 columns in 313 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v4vA/nostruct-align/1v4vA.t04.a2m.gz # 1v4vA.t04.a2m with 3049 sequences, total weight= 3049 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.813352 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v4vA/info/1v4vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v4vA/nostruct-align/1v4vA.t04.a2m.gz, have 75672 columns in 314 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wd3A/nostruct-align/1wd3A.t04.a2m.gz # 1wd3A.t04.a2m with 52 sequences, total weight= 25.2621 avg weight= 0.48581 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wd3A/info/1wd3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wd3A/nostruct-align/1wd3A.t04.a2m.gz, have 76154 columns in 315 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iuaA/nostruct-align/1iuaA.t04.a2m.gz # 1iuaA.t04.a2m with 43 sequences, total weight= 13.6133 avg weight= 0.316588 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iuaA/info/1iuaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iuaA/nostruct-align/1iuaA.t04.a2m.gz, have 76237 columns in 316 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r7aA/nostruct-align/1r7aA.t04.a2m.gz # 1r7aA.t04.a2m with 2324 sequences, total weight= 2324 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04195 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r7aA/info/1r7aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r7aA/nostruct-align/1r7aA.t04.a2m.gz, have 76741 columns in 317 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqtA/nostruct-align/1lqtA.t04.a2m.gz # 1lqtA.t04.a2m with 3003 sequences, total weight= 3003 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.928358 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqtA/info/1lqtA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lqtA/nostruct-align/1lqtA.t04.a2m.gz, have 77193 columns in 318 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qsgA/nostruct-align/1qsgA.t04.a2m.gz # 1qsgA.t04.a2m with 3027 sequences, total weight= 114.757 avg weight= 0.0379113 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32751 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qsgA/info/1qsgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qsgA/nostruct-align/1qsgA.t04.a2m.gz, have 77451 columns in 319 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t04.a2m.gz # 1amf.t04.a2m with 1906 sequences, total weight= 1906 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.889428 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1amf/info/1amf.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t04.a2m.gz, have 77682 columns in 320 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llnA/nostruct-align/1llnA.t04.a2m.gz # 1llnA.t04.a2m with 316 sequences, total weight= 107.791 avg weight= 0.341112 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30267 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llnA/info/1llnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1llnA/nostruct-align/1llnA.t04.a2m.gz, have 77944 columns in 321 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyhA/nostruct-align/1jyhA.t04.a2m.gz # 1jyhA.t04.a2m with 196 sequences, total weight= 196 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04367 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyhA/info/1jyhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jyhA/nostruct-align/1jyhA.t04.a2m.gz, have 78099 columns in 322 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdoA/nostruct-align/1hdoA.t04.a2m.gz # 1hdoA.t04.a2m with 3020 sequences, total weight= 3020 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1652 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdoA/info/1hdoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hdoA/nostruct-align/1hdoA.t04.a2m.gz, have 78304 columns in 323 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1udzA/nostruct-align/1udzA.t04.a2m.gz # 1udzA.t04.a2m with 878 sequences, total weight= 250.144 avg weight= 0.284902 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31721 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1udzA/info/1udzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1udzA/nostruct-align/1udzA.t04.a2m.gz, have 78483 columns in 324 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1luzA/nostruct-align/1luzA.t04.a2m.gz # 1luzA.t04.a2m with 23 sequences, total weight= 6.09942 avg weight= 0.265192 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1luzA/info/1luzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1luzA/nostruct-align/1luzA.t04.a2m.gz, have 78568 columns in 325 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rdqE/nostruct-align/1rdqE.t04.a2m.gz # 1rdqE.t04.a2m with 3094 sequences, total weight= 389.94 avg weight= 0.126031 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.34988 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rdqE/info/1rdqE.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rdqE/nostruct-align/1rdqE.t04.a2m.gz, have 78910 columns in 326 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t04.a2m.gz # 1dosA.t04.a2m with 327 sequences, total weight= 43.1743 avg weight= 0.132031 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dosA/info/1dosA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t04.a2m.gz, have 79268 columns in 327 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iqzA/nostruct-align/1iqzA.t04.a2m.gz # 1iqzA.t04.a2m with 207 sequences, total weight= 207 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26924 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iqzA/info/1iqzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iqzA/nostruct-align/1iqzA.t04.a2m.gz, have 79349 columns in 328 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iomA/nostruct-align/1iomA.t04.a2m.gz # 1iomA.t04.a2m with 678 sequences, total weight= 68.4415 avg weight= 0.100946 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30148 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iomA/info/1iomA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iomA/nostruct-align/1iomA.t04.a2m.gz, have 79723 columns in 329 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n4wA/nostruct-align/1n4wA.t04.a2m.gz # 1n4wA.t04.a2m with 3002 sequences, total weight= 3002 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.878311 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n4wA/info/1n4wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n4wA/nostruct-align/1n4wA.t04.a2m.gz, have 80221 columns in 330 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d7pM/nostruct-align/1d7pM.t04.a2m.gz # 1d7pM.t04.a2m with 371 sequences, total weight= 40.4211 avg weight= 0.108952 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30041 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d7pM/info/1d7pM.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d7pM/nostruct-align/1d7pM.t04.a2m.gz, have 80380 columns in 331 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ja9A/nostruct-align/1ja9A.t04.a2m.gz # 1ja9A.t04.a2m with 3028 sequences, total weight= 99.5324 avg weight= 0.0328707 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32093 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ja9A/info/1ja9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1ja9A/nostruct-align/1ja9A.t04.a2m.gz, have 80639 columns in 332 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdkA/nostruct-align/1hdkA.t04.a2m.gz # 1hdkA.t04.a2m with 433 sequences, total weight= 370.369 avg weight= 0.855357 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30223 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdkA/info/1hdkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hdkA/nostruct-align/1hdkA.t04.a2m.gz, have 80778 columns in 333 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ii5A/nostruct-align/1ii5A.t04.a2m.gz # 1ii5A.t04.a2m with 2345 sequences, total weight= 2345 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.943401 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ii5A/info/1ii5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ii5A/nostruct-align/1ii5A.t04.a2m.gz, have 80999 columns in 334 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t04.a2m.gz # 1bkf.t04.a2m with 954 sequences, total weight= 88.2333 avg weight= 0.0924878 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30577 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bkf/info/1bkf.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t04.a2m.gz, have 81106 columns in 335 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t04.a2m.gz # 1bebA.t04.a2m with 504 sequences, total weight= 504 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05474 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bebA/info/1bebA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t04.a2m.gz, have 81262 columns in 336 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m22A/nostruct-align/1m22A.t04.a2m.gz # 1m22A.t04.a2m with 769 sequences, total weight= 684.723 avg weight= 0.890407 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30212 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m22A/info/1m22A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m22A/nostruct-align/1m22A.t04.a2m.gz, have 81749 columns in 337 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oafA/nostruct-align/1oafA.t04.a2m.gz # 1oafA.t04.a2m with 1311 sequences, total weight= 58.6104 avg weight= 0.0447066 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30235 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oafA/info/1oafA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oafA/nostruct-align/1oafA.t04.a2m.gz, have 81999 columns in 338 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vd5A/nostruct-align/1vd5A.t04.a2m.gz # 1vd5A.t04.a2m with 202 sequences, total weight= 202 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.987048 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vd5A/info/1vd5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vd5A/nostruct-align/1vd5A.t04.a2m.gz, have 82376 columns in 339 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t04.a2m.gz # 1dp7P.t04.a2m with 64 sequences, total weight= 6.18178 avg weight= 0.0965903 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dp7P/info/1dp7P.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t04.a2m.gz, have 82452 columns in 340 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v2bA/nostruct-align/1v2bA.t04.a2m.gz # 1v2bA.t04.a2m with 72 sequences, total weight= 29.5171 avg weight= 0.409959 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v2bA/info/1v2bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v2bA/nostruct-align/1v2bA.t04.a2m.gz, have 82600 columns in 341 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t04.a2m.gz # 1d02A.t04.a2m with 3 sequences, total weight= 1.78707 avg weight= 0.595691 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d02A/info/1d02A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t04.a2m.gz, have 82797 columns in 342 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gp6A/nostruct-align/1gp6A.t04.a2m.gz # 1gp6A.t04.a2m with 909 sequences, total weight= 909 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26372 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gp6A/info/1gp6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gp6A/nostruct-align/1gp6A.t04.a2m.gz, have 83146 columns in 343 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rz2A/nostruct-align/1rz2A.t04.a2m.gz # 1rz2A.t04.a2m with 27 sequences, total weight= 9.13354 avg weight= 0.338279 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rz2A/info/1rz2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rz2A/nostruct-align/1rz2A.t04.a2m.gz, have 83360 columns in 344 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1io7A/nostruct-align/1io7A.t04.a2m.gz # 1io7A.t04.a2m with 3014 sequences, total weight= 3014 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15717 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1io7A/info/1io7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1io7A/nostruct-align/1io7A.t04.a2m.gz, have 83726 columns in 345 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwwA/nostruct-align/1uwwA.t04.a2m.gz # 1uwwA.t04.a2m with 25 sequences, total weight= 6.61754 avg weight= 0.264701 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwwA/info/1uwwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uwwA/nostruct-align/1uwwA.t04.a2m.gz, have 83910 columns in 346 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t04.a2m.gz # 1pinA.t04.a2m with 474 sequences, total weight= 474 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24789 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pinA/info/1pinA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t04.a2m.gz, have 84063 columns in 347 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h75A/nostruct-align/1h75A.t04.a2m.gz # 1h75A.t04.a2m with 1260 sequences, total weight= 1260 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20085 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h75A/info/1h75A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h75A/nostruct-align/1h75A.t04.a2m.gz, have 84139 columns in 348 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ispA/nostruct-align/1ispA.t04.a2m.gz # 1ispA.t04.a2m with 3012 sequences, total weight= 3012 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.748733 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ispA/info/1ispA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ispA/nostruct-align/1ispA.t04.a2m.gz, have 84318 columns in 349 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t04.a2m.gz # 1qh5A.t04.a2m with 2670 sequences, total weight= 2670 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.844919 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qh5A/info/1qh5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t04.a2m.gz, have 84578 columns in 350 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t04.a2m.gz # 1cs1A.t04.a2m with 3003 sequences, total weight= 3003 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03124 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cs1A/info/1cs1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t04.a2m.gz, have 84962 columns in 351 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v0wA/nostruct-align/1v0wA.t04.a2m.gz # 1v0wA.t04.a2m with 828 sequences, total weight= 828 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.961168 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v0wA/info/1v0wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v0wA/nostruct-align/1v0wA.t04.a2m.gz, have 85458 columns in 352 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n08A/nostruct-align/1n08A.t04.a2m.gz # 1n08A.t04.a2m with 224 sequences, total weight= 43.536 avg weight= 0.194357 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30049 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n08A/info/1n08A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n08A/nostruct-align/1n08A.t04.a2m.gz, have 85612 columns in 353 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lc5A/nostruct-align/1lc5A.t04.a2m.gz # 1lc5A.t04.a2m with 3001 sequences, total weight= 3001 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0421 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lc5A/info/1lc5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lc5A/nostruct-align/1lc5A.t04.a2m.gz, have 85967 columns in 354 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5yA/nostruct-align/1r5yA.t04.a2m.gz # 1r5yA.t04.a2m with 272 sequences, total weight= 49.9783 avg weight= 0.183744 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5yA/info/1r5yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r5yA/nostruct-align/1r5yA.t04.a2m.gz, have 86328 columns in 355 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cl8A/nostruct-align/1cl8A.t04.a2m.gz # 1cl8A.t04.a2m with 7 sequences, total weight= 2.37967 avg weight= 0.339953 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cl8A/info/1cl8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cl8A/nostruct-align/1cl8A.t04.a2m.gz, have 86589 columns in 356 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1je0A/nostruct-align/1je0A.t04.a2m.gz # 1je0A.t04.a2m with 765 sequences, total weight= 765 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02879 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1je0A/info/1je0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1je0A/nostruct-align/1je0A.t04.a2m.gz, have 86815 columns in 357 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnyA/nostruct-align/1gnyA.t04.a2m.gz # 1gnyA.t04.a2m with 7 sequences, total weight= 2.23563 avg weight= 0.319376 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnyA/info/1gnyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gnyA/nostruct-align/1gnyA.t04.a2m.gz, have 86968 columns in 358 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwcA/nostruct-align/1uwcA.t04.a2m.gz # 1uwcA.t04.a2m with 841 sequences, total weight= 841 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.79643 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwcA/info/1uwcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uwcA/nostruct-align/1uwcA.t04.a2m.gz, have 87229 columns in 359 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ooeA/nostruct-align/1ooeA.t04.a2m.gz # 1ooeA.t04.a2m with 3028 sequences, total weight= 92.9681 avg weight= 0.0307028 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31696 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ooeA/info/1ooeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ooeA/nostruct-align/1ooeA.t04.a2m.gz, have 87464 columns in 360 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7jA/nostruct-align/1o7jA.t04.a2m.gz # 1o7jA.t04.a2m with 230 sequences, total weight= 51.7613 avg weight= 0.225049 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30055 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7jA/info/1o7jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o7jA/nostruct-align/1o7jA.t04.a2m.gz, have 87789 columns in 361 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uvqA/nostruct-align/1uvqA.t04.a2m.gz # 1uvqA.t04.a2m with 3011 sequences, total weight= 47.3593 avg weight= 0.0157288 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30151 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uvqA/info/1uvqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uvqA/nostruct-align/1uvqA.t04.a2m.gz, have 87971 columns in 362 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6sA/nostruct-align/1m6sA.t04.a2m.gz # 1m6sA.t04.a2m with 3002 sequences, total weight= 3002 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04243 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6sA/info/1m6sA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m6sA/nostruct-align/1m6sA.t04.a2m.gz, have 88314 columns in 363 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vm0A/nostruct-align/1vm0A.t04.a2m.gz # 1vm0A.t04.a2m with 9 sequences, total weight= 2.94751 avg weight= 0.327501 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vm0A/info/1vm0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vm0A/nostruct-align/1vm0A.t04.a2m.gz, have 88407 columns in 364 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t04.a2m.gz # 1e0cA.t04.a2m with 1372 sequences, total weight= 1372 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.96701 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e0cA/info/1e0cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t04.a2m.gz, have 88678 columns in 365 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1usgA/nostruct-align/1usgA.t04.a2m.gz # 1usgA.t04.a2m with 1664 sequences, total weight= 1664 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.893469 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1usgA/info/1usgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1usgA/nostruct-align/1usgA.t04.a2m.gz, have 89023 columns in 366 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1ga6A/nostruct-align/1ga6A.t04.a2m.gz # 1ga6A.t04.a2m with 1480 sequences, total weight= 1480 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09472 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1ga6A/info/1ga6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1ga6A/nostruct-align/1ga6A.t04.a2m.gz, have 89392 columns in 367 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t04.a2m.gz # 1agjA.t04.a2m with 3082 sequences, total weight= 3082 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25919 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1agjA/info/1agjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t04.a2m.gz, have 89634 columns in 368 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1se8A/nostruct-align/1se8A.t04.a2m.gz # 1se8A.t04.a2m with 461 sequences, total weight= 39.2279 avg weight= 0.085093 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1se8A/info/1se8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1se8A/nostruct-align/1se8A.t04.a2m.gz, have 89847 columns in 369 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t04.a2m.gz # 1pot.t04.a2m with 1824 sequences, total weight= 1824 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.866341 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pot/info/1pot.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t04.a2m.gz, have 90169 columns in 370 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t04.a2m.gz # 1vie.t04.a2m with 8 sequences, total weight= 1.88469 avg weight= 0.235586 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vie/info/1vie.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t04.a2m.gz, have 90229 columns in 371 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dk0A/nostruct-align/1dk0A.t04.a2m.gz # 1dk0A.t04.a2m with 5 sequences, total weight= 3.50429 avg weight= 0.700858 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dk0A/info/1dk0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dk0A/nostruct-align/1dk0A.t04.a2m.gz, have 90402 columns in 372 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6jA/nostruct-align/1r6jA.t04.a2m.gz # 1r6jA.t04.a2m with 1068 sequences, total weight= 66.7784 avg weight= 0.0625266 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30941 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6jA/info/1r6jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r6jA/nostruct-align/1r6jA.t04.a2m.gz, have 90484 columns in 373 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h7cA/nostruct-align/1h7cA.t04.a2m.gz # 1h7cA.t04.a2m with 30 sequences, total weight= 15.1084 avg weight= 0.503613 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h7cA/info/1h7cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h7cA/nostruct-align/1h7cA.t04.a2m.gz, have 90587 columns in 374 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t04.a2m.gz # 1elwA.t04.a2m with 5344 sequences, total weight= 5344 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.88628 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1elwA/info/1elwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t04.a2m.gz, have 90704 columns in 375 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t04.a2m.gz # 1aho.t04.a2m with 234 sequences, total weight= 10.2986 avg weight= 0.0440112 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aho/info/1aho.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t04.a2m.gz, have 90768 columns in 376 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oewA/nostruct-align/1oewA.t04.a2m.gz # 1oewA.t04.a2m with 988 sequences, total weight= 988 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28984 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oewA/info/1oewA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oewA/nostruct-align/1oewA.t04.a2m.gz, have 91096 columns in 377 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rk6A/nostruct-align/1rk6A.t04.a2m.gz # 1rk6A.t04.a2m with 1817 sequences, total weight= 1817 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.879055 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rk6A/info/1rk6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rk6A/nostruct-align/1rk6A.t04.a2m.gz, have 91570 columns in 378 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9iA/nostruct-align/1o9iA.t04.a2m.gz # 1o9iA.t04.a2m with 57 sequences, total weight= 15.9185 avg weight= 0.279271 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9iA/info/1o9iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o9iA/nostruct-align/1o9iA.t04.a2m.gz, have 91836 columns in 379 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jboA/nostruct-align/1jboA.t04.a2m.gz # 1jboA.t04.a2m with 640 sequences, total weight= 32.4351 avg weight= 0.0506798 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jboA/info/1jboA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jboA/nostruct-align/1jboA.t04.a2m.gz, have 91998 columns in 380 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ne9A/nostruct-align/1ne9A.t04.a2m.gz # 1ne9A.t04.a2m with 328 sequences, total weight= 328 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.941771 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ne9A/info/1ne9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1ne9A/nostruct-align/1ne9A.t04.a2m.gz, have 92333 columns in 381 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwaA/nostruct-align/1nwaA.t04.a2m.gz # 1nwaA.t04.a2m with 349 sequences, total weight= 19.033 avg weight= 0.0545359 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwaA/info/1nwaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nwaA/nostruct-align/1nwaA.t04.a2m.gz, have 92501 columns in 382 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j83A/nostruct-align/1j83A.t04.a2m.gz # 1j83A.t04.a2m with 25 sequences, total weight= 6.17787 avg weight= 0.247115 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j83A/info/1j83A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j83A/nostruct-align/1j83A.t04.a2m.gz, have 92681 columns in 383 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqfA/nostruct-align/1kqfA.t04.a2m.gz # 1kqfA.t04.a2m with 1158 sequences, total weight= 1158 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15645 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqfA/info/1kqfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kqfA/nostruct-align/1kqfA.t04.a2m.gz, have 93663 columns in 384 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t04.a2m.gz # 3proC.t04.a2m with 29 sequences, total weight= 15.2943 avg weight= 0.52739 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3p/3proC/info/3proC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t04.a2m.gz, have 93813 columns in 385 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t04.a2m.gz # 1mtyB.t04.a2m with 225 sequences, total weight= 67.8499 avg weight= 0.301555 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyB/info/1mtyB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t04.a2m.gz, have 94197 columns in 386 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7rA/nostruct-align/1v7rA.t04.a2m.gz # 1v7rA.t04.a2m with 237 sequences, total weight= 27.1048 avg weight= 0.114366 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7rA/info/1v7rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v7rA/nostruct-align/1v7rA.t04.a2m.gz, have 94383 columns in 387 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54E/nostruct-align/1v54E.t04.a2m.gz # 1v54E.t04.a2m with 31 sequences, total weight= 5.07159 avg weight= 0.1636 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54E/info/1v54E.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v54E/nostruct-align/1v54E.t04.a2m.gz, have 94488 columns in 388 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ujpA/nostruct-align/1ujpA.t04.a2m.gz # 1ujpA.t04.a2m with 499 sequences, total weight= 499 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20374 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ujpA/info/1ujpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ujpA/nostruct-align/1ujpA.t04.a2m.gz, have 94731 columns in 389 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q4uA/nostruct-align/1q4uA.t04.a2m.gz # 1q4uA.t04.a2m with 768 sequences, total weight= 768 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.930136 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q4uA/info/1q4uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q4uA/nostruct-align/1q4uA.t04.a2m.gz, have 94871 columns in 390 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1odzA/nostruct-align/1odzA.t04.a2m.gz # 1odzA.t04.a2m with 68 sequences, total weight= 68 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10287 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1odzA/info/1odzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1odzA/nostruct-align/1odzA.t04.a2m.gz, have 95250 columns in 391 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h70A/nostruct-align/1h70A.t04.a2m.gz # 1h70A.t04.a2m with 292 sequences, total weight= 292 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1504 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h70A/info/1h70A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h70A/nostruct-align/1h70A.t04.a2m.gz, have 95505 columns in 392 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t04.a2m.gz # 1nkd.t04.a2m with 25 sequences, total weight= 3.99217 avg weight= 0.159687 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkd/info/1nkd.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t04.a2m.gz, have 95564 columns in 393 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jatB/nostruct-align/1jatB.t04.a2m.gz # 1jatB.t04.a2m with 934 sequences, total weight= 173.281 avg weight= 0.185526 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31559 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jatB/info/1jatB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jatB/nostruct-align/1jatB.t04.a2m.gz, have 95696 columns in 394 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ug6A/nostruct-align/1ug6A.t04.a2m.gz # 1ug6A.t04.a2m with 756 sequences, total weight= 78.1685 avg weight= 0.103397 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30261 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ug6A/info/1ug6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ug6A/nostruct-align/1ug6A.t04.a2m.gz, have 96122 columns in 395 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xfiA/nostruct-align/1xfiA.t04.a2m.gz # 1xfiA.t04.a2m with 99 sequences, total weight= 99 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24946 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xfiA/info/1xfiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xfiA/nostruct-align/1xfiA.t04.a2m.gz, have 96465 columns in 396 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p4oA/nostruct-align/1p4oA.t04.a2m.gz # 1p4oA.t04.a2m with 3045 sequences, total weight= 97.1982 avg weight= 0.0319206 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33694 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p4oA/info/1p4oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p4oA/nostruct-align/1p4oA.t04.a2m.gz, have 96773 columns in 397 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t04.a2m.gz # 1plc.t04.a2m with 284 sequences, total weight= 154.858 avg weight= 0.545274 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30446 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1plc/info/1plc.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t04.a2m.gz, have 96872 columns in 398 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t04.a2m.gz # 1ajsA.t04.a2m with 3002 sequences, total weight= 3002 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.976379 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ajsA/info/1ajsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t04.a2m.gz, have 97284 columns in 399 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t04.a2m.gz # 1c3cA.t04.a2m with 923 sequences, total weight= 380.048 avg weight= 0.411753 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31537 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c3cA/info/1c3cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t04.a2m.gz, have 97708 columns in 400 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mzbA/nostruct-align/1mzbA.t04.a2m.gz # 1mzbA.t04.a2m with 441 sequences, total weight= 310.888 avg weight= 0.704962 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30533 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mzbA/info/1mzbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mzbA/nostruct-align/1mzbA.t04.a2m.gz, have 97841 columns in 401 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1odmA/nostruct-align/1odmA.t04.a2m.gz # 1odmA.t04.a2m with 912 sequences, total weight= 912 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2624 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1odmA/info/1odmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1odmA/nostruct-align/1odmA.t04.a2m.gz, have 98170 columns in 402 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cmcA/nostruct-align/1cmcA.t04.a2m.gz # 1cmcA.t04.a2m with 20 sequences, total weight= 2.24005 avg weight= 0.112003 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cmcA/info/1cmcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cmcA/nostruct-align/1cmcA.t04.a2m.gz, have 98274 columns in 403 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t04.a2m.gz # 1c1kA.t04.a2m with 9 sequences, total weight= 4.31028 avg weight= 0.47892 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c1kA/info/1c1kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t04.a2m.gz, have 98491 columns in 404 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o54A/nostruct-align/1o54A.t04.a2m.gz # 1o54A.t04.a2m with 3041 sequences, total weight= 3041 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.814418 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o54A/info/1o54A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o54A/nostruct-align/1o54A.t04.a2m.gz, have 98756 columns in 405 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oruA/nostruct-align/1oruA.t04.a2m.gz # 1oruA.t04.a2m with 105 sequences, total weight= 66.7035 avg weight= 0.635271 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oruA/info/1oruA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oruA/nostruct-align/1oruA.t04.a2m.gz, have 98938 columns in 406 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gutA/nostruct-align/1gutA.t04.a2m.gz # 1gutA.t04.a2m with 172 sequences, total weight= 21.9401 avg weight= 0.127559 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gutA/info/1gutA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gutA/nostruct-align/1gutA.t04.a2m.gz, have 99005 columns in 407 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxmA/nostruct-align/1gxmA.t04.a2m.gz # 1gxmA.t04.a2m with 209 sequences, total weight= 209 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1797 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxmA/info/1gxmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gxmA/nostruct-align/1gxmA.t04.a2m.gz, have 99329 columns in 408 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g55A/nostruct-align/1g55A.t04.a2m.gz # 1g55A.t04.a2m with 559 sequences, total weight= 559 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10593 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g55A/info/1g55A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g55A/nostruct-align/1g55A.t04.a2m.gz, have 99642 columns in 409 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t04.a2m.gz # 1cqxA.t04.a2m with 1840 sequences, total weight= 1840 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.969153 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cqxA/info/1cqxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t04.a2m.gz, have 100045 columns in 410 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1txlA/nostruct-align/1txlA.t04.a2m.gz # 1txlA.t04.a2m with 40 sequences, total weight= 9.41104 avg weight= 0.235276 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1txlA/info/1txlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1txlA/nostruct-align/1txlA.t04.a2m.gz, have 100233 columns in 411 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ud9A/nostruct-align/1ud9A.t04.a2m.gz # 1ud9A.t04.a2m with 219 sequences, total weight= 219 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23247 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ud9A/info/1ud9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ud9A/nostruct-align/1ud9A.t04.a2m.gz, have 100475 columns in 412 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qjpA/nostruct-align/1qjpA.t04.a2m.gz # 1qjpA.t04.a2m with 395 sequences, total weight= 215.461 avg weight= 0.545471 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30623 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qjpA/info/1qjpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qjpA/nostruct-align/1qjpA.t04.a2m.gz, have 100612 columns in 413 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1of8A/nostruct-align/1of8A.t04.a2m.gz # 1of8A.t04.a2m with 413 sequences, total weight= 35.5448 avg weight= 0.0860648 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1of8A/info/1of8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1of8A/nostruct-align/1of8A.t04.a2m.gz, have 100951 columns in 414 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ufyA/nostruct-align/1ufyA.t04.a2m.gz # 1ufyA.t04.a2m with 40 sequences, total weight= 7.37105 avg weight= 0.184276 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ufyA/info/1ufyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ufyA/nostruct-align/1ufyA.t04.a2m.gz, have 101072 columns in 415 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qz5A/nostruct-align/1qz5A.t04.a2m.gz # 1qz5A.t04.a2m with 2026 sequences, total weight= 121.048 avg weight= 0.0597471 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31257 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qz5A/info/1qz5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qz5A/nostruct-align/1qz5A.t04.a2m.gz, have 101431 columns in 416 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7wA/nostruct-align/1v7wA.t04.a2m.gz # 1v7wA.t04.a2m with 897 sequences, total weight= 897 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.776067 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7wA/info/1v7wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v7wA/nostruct-align/1v7wA.t04.a2m.gz, have 102210 columns in 417 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mk0A/nostruct-align/1mk0A.t04.a2m.gz # 1mk0A.t04.a2m with 7 sequences, total weight= 3.8822 avg weight= 0.5546 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mk0A/info/1mk0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mk0A/nostruct-align/1mk0A.t04.a2m.gz, have 102307 columns in 418 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1euwA/nostruct-align/1euwA.t04.a2m.gz # 1euwA.t04.a2m with 734 sequences, total weight= 734 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26205 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1euwA/info/1euwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1euwA/nostruct-align/1euwA.t04.a2m.gz, have 102443 columns in 419 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnfA/nostruct-align/1nnfA.t04.a2m.gz # 1nnfA.t04.a2m with 1867 sequences, total weight= 1867 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.867251 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnfA/info/1nnfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nnfA/nostruct-align/1nnfA.t04.a2m.gz, have 102751 columns in 420 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t04.a2m.gz # 1ah7.t04.a2m with 133 sequences, total weight= 133 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26884 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ah7/info/1ah7.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t04.a2m.gz, have 102996 columns in 421 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i88A/nostruct-align/1i88A.t04.a2m.gz # 1i88A.t04.a2m with 3222 sequences, total weight= 3222 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13026 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i88A/info/1i88A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i88A/nostruct-align/1i88A.t04.a2m.gz, have 103385 columns in 422 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iyhA/nostruct-align/1iyhA.t04.a2m.gz # 1iyhA.t04.a2m with 2529 sequences, total weight= 2529 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02011 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iyhA/info/1iyhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iyhA/nostruct-align/1iyhA.t04.a2m.gz, have 103583 columns in 423 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t04.a2m.gz # 1qksA.t04.a2m with 3395 sequences, total weight= 3395 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.988058 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qksA/info/1qksA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t04.a2m.gz, have 104142 columns in 424 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t04.a2m.gz # 3cla.t04.a2m with 672 sequences, total weight= 118.531 avg weight= 0.176386 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30627 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3c/3cla/info/3cla.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t04.a2m.gz, have 104355 columns in 425 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rzhH/nostruct-align/1rzhH.t04.a2m.gz # 1rzhH.t04.a2m with 19 sequences, total weight= 4.35483 avg weight= 0.229202 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rzhH/info/1rzhH.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rzhH/nostruct-align/1rzhH.t04.a2m.gz, have 104593 columns in 426 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1mA/nostruct-align/1p1mA.t04.a2m.gz # 1p1mA.t04.a2m with 1920 sequences, total weight= 1920 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.900616 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1mA/info/1p1mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p1mA/nostruct-align/1p1mA.t04.a2m.gz, have 104997 columns in 427 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n9pA/nostruct-align/1n9pA.t04.a2m.gz # 1n9pA.t04.a2m with 216 sequences, total weight= 18.5953 avg weight= 0.0860895 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n9pA/info/1n9pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n9pA/nostruct-align/1n9pA.t04.a2m.gz, have 105194 columns in 428 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqwA/nostruct-align/1kqwA.t04.a2m.gz # 1kqwA.t04.a2m with 340 sequences, total weight= 33.6911 avg weight= 0.0990913 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqwA/info/1kqwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kqwA/nostruct-align/1kqwA.t04.a2m.gz, have 105328 columns in 429 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tp6A/nostruct-align/1tp6A.t04.a2m.gz # 1tp6A.t04.a2m with 13 sequences, total weight= 6.28118 avg weight= 0.483167 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tp6A/info/1tp6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tp6A/nostruct-align/1tp6A.t04.a2m.gz, have 105454 columns in 430 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1erw/nostruct-align/1erw.t04.a2m.gz # 1erw.t04.a2m with 3486 sequences, total weight= 3486 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10601 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1erw/info/1erw.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1erw/nostruct-align/1erw.t04.a2m.gz, have 105559 columns in 431 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q0pA/nostruct-align/1q0pA.t04.a2m.gz # 1q0pA.t04.a2m with 1957 sequences, total weight= 1957 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11361 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q0pA/info/1q0pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q0pA/nostruct-align/1q0pA.t04.a2m.gz, have 105751 columns in 432 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dszA/nostruct-align/1dszA.t04.a2m.gz # 1dszA.t04.a2m with 2038 sequences, total weight= 31.0952 avg weight= 0.0152577 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30084 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dszA/info/1dszA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dszA/nostruct-align/1dszA.t04.a2m.gz, have 105826 columns in 433 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vziA/nostruct-align/1vziA.t04.a2m.gz # 1vziA.t04.a2m with 32 sequences, total weight= 12.9231 avg weight= 0.403846 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vziA/info/1vziA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vziA/nostruct-align/1vziA.t04.a2m.gz, have 105951 columns in 434 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fxlA/nostruct-align/1fxlA.t04.a2m.gz # 1fxlA.t04.a2m with 3750 sequences, total weight= 3750 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16744 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fxlA/info/1fxlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fxlA/nostruct-align/1fxlA.t04.a2m.gz, have 106118 columns in 435 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmxA/nostruct-align/1gmxA.t04.a2m.gz # 1gmxA.t04.a2m with 1645 sequences, total weight= 1645 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0687 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmxA/info/1gmxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gmxA/nostruct-align/1gmxA.t04.a2m.gz, have 106226 columns in 436 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vybA/nostruct-align/1vybA.t04.a2m.gz # 1vybA.t04.a2m with 1638 sequences, total weight= 1638 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.8668 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vybA/info/1vybA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vybA/nostruct-align/1vybA.t04.a2m.gz, have 106462 columns in 437 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t04.a2m.gz # 1jetA.t04.a2m with 1356 sequences, total weight= 1356 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05863 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jetA/info/1jetA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t04.a2m.gz, have 106979 columns in 438 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t04.a2m.gz # 1gbs.t04.a2m with 50 sequences, total weight= 30.0243 avg weight= 0.600486 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gbs/info/1gbs.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t04.a2m.gz, have 107164 columns in 439 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oohA/nostruct-align/1oohA.t04.a2m.gz # 1oohA.t04.a2m with 340 sequences, total weight= 340 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00554 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oohA/info/1oohA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oohA/nostruct-align/1oohA.t04.a2m.gz, have 107290 columns in 440 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pz4A/nostruct-align/1pz4A.t04.a2m.gz # 1pz4A.t04.a2m with 154 sequences, total weight= 66.5057 avg weight= 0.431855 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30063 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pz4A/info/1pz4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pz4A/nostruct-align/1pz4A.t04.a2m.gz, have 107403 columns in 441 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t04.a2m.gz # 1d4oA.t04.a2m with 148 sequences, total weight= 4.72882 avg weight= 0.0319515 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4oA/info/1d4oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t04.a2m.gz, have 107580 columns in 442 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qmvA/nostruct-align/1qmvA.t04.a2m.gz # 1qmvA.t04.a2m with 2259 sequences, total weight= 2259 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11201 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qmvA/info/1qmvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qmvA/nostruct-align/1qmvA.t04.a2m.gz, have 107777 columns in 443 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t04.a2m.gz # 1qgiA.t04.a2m with 26 sequences, total weight= 13.8613 avg weight= 0.533129 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qgiA/info/1qgiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t04.a2m.gz, have 108036 columns in 444 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gk9A/nostruct-align/1gk9A.t04.a2m.gz # 1gk9A.t04.a2m with 118 sequences, total weight= 97.7923 avg weight= 0.828748 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gk9A/info/1gk9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gk9A/nostruct-align/1gk9A.t04.a2m.gz, have 108244 columns in 445 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t04.a2m.gz # 1dy5A.t04.a2m with 433 sequences, total weight= 27.3757 avg weight= 0.0632234 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dy5A/info/1dy5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t04.a2m.gz, have 108368 columns in 446 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t04.a2m.gz # 1mdc.t04.a2m with 316 sequences, total weight= 30.2254 avg weight= 0.0956502 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mdc/info/1mdc.stride-mixed.near-backbone-11 WARNING: skipping h, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t04.a2m.gz, have 108499 columns in 447 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfsA/nostruct-align/1sfsA.t04.a2m.gz # 1sfsA.t04.a2m with 3 sequences, total weight= 2.6116 avg weight= 0.870533 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfsA/info/1sfsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sfsA/nostruct-align/1sfsA.t04.a2m.gz, have 108712 columns in 448 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi0A/nostruct-align/1oi0A.t04.a2m.gz # 1oi0A.t04.a2m with 79 sequences, total weight= 79 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25416 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi0A/info/1oi0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oi0A/nostruct-align/1oi0A.t04.a2m.gz, have 108820 columns in 449 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhvA/nostruct-align/1vhvA.t04.a2m.gz # 1vhvA.t04.a2m with 946 sequences, total weight= 946 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12585 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhvA/info/1vhvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhvA/nostruct-align/1vhvA.t04.a2m.gz, have 109071 columns in 450 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jf3A/nostruct-align/1jf3A.t04.a2m.gz # 1jf3A.t04.a2m with 1903 sequences, total weight= 803.845 avg weight= 0.422409 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32227 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jf3A/info/1jf3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jf3A/nostruct-align/1jf3A.t04.a2m.gz, have 109218 columns in 451 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mkkA/nostruct-align/1mkkA.t04.a2m.gz # 1mkkA.t04.a2m with 200 sequences, total weight= 15.6025 avg weight= 0.0780123 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mkkA/info/1mkkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mkkA/nostruct-align/1mkkA.t04.a2m.gz, have 109311 columns in 452 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pyfA/nostruct-align/1pyfA.t04.a2m.gz # 1pyfA.t04.a2m with 1772 sequences, total weight= 1772 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28216 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pyfA/info/1pyfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pyfA/nostruct-align/1pyfA.t04.a2m.gz, have 109622 columns in 453 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n55A/nostruct-align/1n55A.t04.a2m.gz # 1n55A.t04.a2m with 584 sequences, total weight= 27.1771 avg weight= 0.0465361 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n55A/info/1n55A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n55A/nostruct-align/1n55A.t04.a2m.gz, have 109871 columns in 454 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t04.a2m.gz # 1aba.t04.a2m with 536 sequences, total weight= 164.13 avg weight= 0.306213 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30733 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aba/info/1aba.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t04.a2m.gz, have 109958 columns in 455 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1ql0A/nostruct-align/1ql0A.t04.a2m.gz # 1ql0A.t04.a2m with 164 sequences, total weight= 164 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19063 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1ql0A/info/1ql0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1ql0A/nostruct-align/1ql0A.t04.a2m.gz, have 110199 columns in 456 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gttA/nostruct-align/1gttA.t04.a2m.gz # 1gttA.t04.a2m with 671 sequences, total weight= 34.0391 avg weight= 0.050729 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gttA/info/1gttA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gttA/nostruct-align/1gttA.t04.a2m.gz, have 110620 columns in 457 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q9uA/nostruct-align/1q9uA.t04.a2m.gz # 1q9uA.t04.a2m with 67 sequences, total weight= 67 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16872 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q9uA/info/1q9uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q9uA/nostruct-align/1q9uA.t04.a2m.gz, have 110748 columns in 458 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j71A/nostruct-align/1j71A.t04.a2m.gz # 1j71A.t04.a2m with 980 sequences, total weight= 980 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26932 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j71A/info/1j71A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j71A/nostruct-align/1j71A.t04.a2m.gz, have 111082 columns in 459 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h32A/nostruct-align/1h32A.t04.a2m.gz # 1h32A.t04.a2m with 532 sequences, total weight= 532 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02674 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h32A/info/1h32A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h32A/nostruct-align/1h32A.t04.a2m.gz, have 111343 columns in 460 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwuA/nostruct-align/1gwuA.t04.a2m.gz # 1gwuA.t04.a2m with 1317 sequences, total weight= 94.5667 avg weight= 0.0718046 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30653 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwuA/info/1gwuA.stride-mixed.near-backbone-11 WARNING: skipping e, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1g/1gwuA/nostruct-align/1gwuA.t04.a2m.gz, have 111649 columns in 461 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q8fA/nostruct-align/1q8fA.t04.a2m.gz # 1q8fA.t04.a2m with 228 sequences, total weight= 153.287 avg weight= 0.67231 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30229 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q8fA/info/1q8fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q8fA/nostruct-align/1q8fA.t04.a2m.gz, have 111957 columns in 462 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t04.a2m.gz # 3lzt.t04.a2m with 519 sequences, total weight= 12.5638 avg weight= 0.0242078 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3l/3lzt/info/3lzt.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t04.a2m.gz, have 112086 columns in 463 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kmvA/nostruct-align/1kmvA.t04.a2m.gz # 1kmvA.t04.a2m with 577 sequences, total weight= 577 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19582 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kmvA/info/1kmvA.stride-mixed.near-backbone-11 WARNING: skipping b, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1k/1kmvA/nostruct-align/1kmvA.t04.a2m.gz, have 112271 columns in 464 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrjA/nostruct-align/1nrjA.t04.a2m.gz # 1nrjA.t04.a2m with 5 sequences, total weight= 2.71909 avg weight= 0.543818 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrjA/info/1nrjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nrjA/nostruct-align/1nrjA.t04.a2m.gz, have 112418 columns in 465 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi6A/nostruct-align/1oi6A.t04.a2m.gz # 1oi6A.t04.a2m with 306 sequences, total weight= 54.3826 avg weight= 0.177721 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi6A/info/1oi6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oi6A/nostruct-align/1oi6A.t04.a2m.gz, have 112620 columns in 466 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oq1A/nostruct-align/1oq1A.t04.a2m.gz # 1oq1A.t04.a2m with 3 sequences, total weight= 1.77508 avg weight= 0.591694 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oq1A/info/1oq1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oq1A/nostruct-align/1oq1A.t04.a2m.gz, have 112843 columns in 467 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qstA/nostruct-align/1qstA.t04.a2m.gz # 1qstA.t04.a2m with 2984 sequences, total weight= 2984 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.835086 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qstA/info/1qstA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qstA/nostruct-align/1qstA.t04.a2m.gz, have 113003 columns in 468 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nxmA/nostruct-align/1nxmA.t04.a2m.gz # 1nxmA.t04.a2m with 305 sequences, total weight= 55.6341 avg weight= 0.182407 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nxmA/info/1nxmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nxmA/nostruct-align/1nxmA.t04.a2m.gz, have 113197 columns in 469 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s9rA/nostruct-align/1s9rA.t04.a2m.gz # 1s9rA.t04.a2m with 283 sequences, total weight= 283 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17823 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s9rA/info/1s9rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s9rA/nostruct-align/1s9rA.t04.a2m.gz, have 113606 columns in 470 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5nB/nostruct-align/1k5nB.t04.a2m.gz # 1k5nB.t04.a2m with 3010 sequences, total weight= 21.3424 avg weight= 0.00709051 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5nB/info/1k5nB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k5nB/nostruct-align/1k5nB.t04.a2m.gz, have 113706 columns in 471 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eaqA/nostruct-align/1eaqA.t04.a2m.gz # 1eaqA.t04.a2m with 108 sequences, total weight= 3.83463 avg weight= 0.0355059 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eaqA/info/1eaqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eaqA/nostruct-align/1eaqA.t04.a2m.gz, have 113830 columns in 472 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ls1A/nostruct-align/1ls1A.t04.a2m.gz # 1ls1A.t04.a2m with 2672 sequences, total weight= 2672 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.927063 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ls1A/info/1ls1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1ls1A/nostruct-align/1ls1A.t04.a2m.gz, have 114119 columns in 473 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hp1A/nostruct-align/1hp1A.t04.a2m.gz # 1hp1A.t04.a2m with 1370 sequences, total weight= 1370 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.919813 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hp1A/info/1hp1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hp1A/nostruct-align/1hp1A.t04.a2m.gz, have 114635 columns in 474 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t04.a2m.gz # 3seb.t04.a2m with 239 sequences, total weight= 42.9043 avg weight= 0.179516 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3seb/info/3seb.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t04.a2m.gz, have 114873 columns in 475 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5vB/nostruct-align/1p5vB.t04.a2m.gz # 1p5vB.t04.a2m with 5 sequences, total weight= 1.82221 avg weight= 0.364441 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5vB/info/1p5vB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p5vB/nostruct-align/1p5vB.t04.a2m.gz, have 115009 columns in 476 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nq7A/nostruct-align/1nq7A.t04.a2m.gz # 1nq7A.t04.a2m with 1937 sequences, total weight= 1937 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.915818 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nq7A/info/1nq7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nq7A/nostruct-align/1nq7A.t04.a2m.gz, have 115253 columns in 477 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1is3A/nostruct-align/1is3A.t04.a2m.gz # 1is3A.t04.a2m with 436 sequences, total weight= 296.257 avg weight= 0.679489 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30521 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1is3A/info/1is3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1is3A/nostruct-align/1is3A.t04.a2m.gz, have 115387 columns in 478 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t04.a2m.gz # 1nkr.t04.a2m with 8160 sequences, total weight= 8160 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.962311 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkr/info/1nkr.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t04.a2m.gz, have 115582 columns in 479 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vh4A/nostruct-align/1vh4A.t04.a2m.gz # 1vh4A.t04.a2m with 315 sequences, total weight= 315 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28035 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vh4A/info/1vh4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vh4A/nostruct-align/1vh4A.t04.a2m.gz, have 115992 columns in 480 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o97C/nostruct-align/1o97C.t04.a2m.gz # 1o97C.t04.a2m with 316 sequences, total weight= 67.8324 avg weight= 0.21466 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3008 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o97C/info/1o97C.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o97C/nostruct-align/1o97C.t04.a2m.gz, have 116243 columns in 481 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t04.a2m.gz # 1qreA.t04.a2m with 1737 sequences, total weight= 1737 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05538 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qreA/info/1qreA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t04.a2m.gz, have 116453 columns in 482 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ow4A/nostruct-align/1ow4A.t04.a2m.gz # 1ow4A.t04.a2m with 20 sequences, total weight= 15.5078 avg weight= 0.775392 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ow4A/info/1ow4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ow4A/nostruct-align/1ow4A.t04.a2m.gz, have 116573 columns in 483 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqiA/nostruct-align/1gqiA.t04.a2m.gz # 1gqiA.t04.a2m with 30 sequences, total weight= 6.92679 avg weight= 0.230893 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqiA/info/1gqiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gqiA/nostruct-align/1gqiA.t04.a2m.gz, have 117281 columns in 484 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mw9X/nostruct-align/1mw9X.t04.a2m.gz # 1mw9X.t04.a2m with 478 sequences, total weight= 66.25 avg weight= 0.138598 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30219 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mw9X/info/1mw9X.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mw9X/nostruct-align/1mw9X.t04.a2m.gz, have 117837 columns in 485 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwzA/nostruct-align/1rwzA.t04.a2m.gz # 1rwzA.t04.a2m with 200 sequences, total weight= 200 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25548 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwzA/info/1rwzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rwzA/nostruct-align/1rwzA.t04.a2m.gz, have 118081 columns in 486 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmiA/nostruct-align/1gmiA.t04.a2m.gz # 1gmiA.t04.a2m with 2184 sequences, total weight= 2184 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05004 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmiA/info/1gmiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gmiA/nostruct-align/1gmiA.t04.a2m.gz, have 118216 columns in 487 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n57A/nostruct-align/1n57A.t04.a2m.gz # 1n57A.t04.a2m with 710 sequences, total weight= 710 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14825 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n57A/info/1n57A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n57A/nostruct-align/1n57A.t04.a2m.gz, have 118495 columns in 488 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h12A/nostruct-align/1h12A.t04.a2m.gz # 1h12A.t04.a2m with 85 sequences, total weight= 85 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24676 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h12A/info/1h12A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h12A/nostruct-align/1h12A.t04.a2m.gz, have 118899 columns in 489 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqfC/nostruct-align/1kqfC.t04.a2m.gz # 1kqfC.t04.a2m with 242 sequences, total weight= 242 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11103 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqfC/info/1kqfC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kqfC/nostruct-align/1kqfC.t04.a2m.gz, have 119115 columns in 490 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nykA/nostruct-align/1nykA.t04.a2m.gz # 1nykA.t04.a2m with 1172 sequences, total weight= 1172 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00223 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nykA/info/1nykA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nykA/nostruct-align/1nykA.t04.a2m.gz, have 119271 columns in 491 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t4bA/nostruct-align/1t4bA.t04.a2m.gz # 1t4bA.t04.a2m with 2718 sequences, total weight= 2718 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29967 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t4bA/info/1t4bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t4bA/nostruct-align/1t4bA.t04.a2m.gz, have 119638 columns in 492 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mj5A/nostruct-align/1mj5A.t04.a2m.gz # 1mj5A.t04.a2m with 3011 sequences, total weight= 3011 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.754442 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mj5A/info/1mj5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mj5A/nostruct-align/1mj5A.t04.a2m.gz, have 119935 columns in 493 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fsgA/nostruct-align/1fsgA.t04.a2m.gz # 1fsgA.t04.a2m with 2138 sequences, total weight= 2138 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00252 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fsgA/info/1fsgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fsgA/nostruct-align/1fsgA.t04.a2m.gz, have 120168 columns in 494 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuqA/nostruct-align/1uuqA.t04.a2m.gz # 1uuqA.t04.a2m with 2110 sequences, total weight= 2110 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.857813 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuqA/info/1uuqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uuqA/nostruct-align/1uuqA.t04.a2m.gz, have 120578 columns in 495 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kshB/nostruct-align/1kshB.t04.a2m.gz # 1kshB.t04.a2m with 36 sequences, total weight= 7.95809 avg weight= 0.221058 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kshB/info/1kshB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kshB/nostruct-align/1kshB.t04.a2m.gz, have 120720 columns in 496 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1od6A/nostruct-align/1od6A.t04.a2m.gz # 1od6A.t04.a2m with 1043 sequences, total weight= 1043 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02823 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1od6A/info/1od6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1od6A/nostruct-align/1od6A.t04.a2m.gz, have 120875 columns in 497 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxiA/nostruct-align/1hxiA.t04.a2m.gz # 1hxiA.t04.a2m with 3803 sequences, total weight= 3803 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.969252 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxiA/info/1hxiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hxiA/nostruct-align/1hxiA.t04.a2m.gz, have 120987 columns in 498 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t04.a2m.gz # 1a4iA.t04.a2m with 699 sequences, total weight= 282.654 avg weight= 0.404369 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30964 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a4iA/info/1a4iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t04.a2m.gz, have 121272 columns in 499 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hq1A/nostruct-align/1hq1A.t04.a2m.gz # 1hq1A.t04.a2m with 280 sequences, total weight= 12.5514 avg weight= 0.0448266 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hq1A/info/1hq1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hq1A/nostruct-align/1hq1A.t04.a2m.gz, have 121348 columns in 500 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j31A/nostruct-align/1j31A.t04.a2m.gz # 1j31A.t04.a2m with 863 sequences, total weight= 863 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10112 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j31A/info/1j31A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j31A/nostruct-align/1j31A.t04.a2m.gz, have 121610 columns in 501 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t04.a2m.gz # 1c5eA.t04.a2m with 16 sequences, total weight= 3.79101 avg weight= 0.236938 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c5eA/info/1c5eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t04.a2m.gz, have 121705 columns in 502 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6dA/nostruct-align/1r6dA.t04.a2m.gz # 1r6dA.t04.a2m with 3011 sequences, total weight= 3011 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08672 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6dA/info/1r6dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r6dA/nostruct-align/1r6dA.t04.a2m.gz, have 122027 columns in 503 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p3dA/nostruct-align/1p3dA.t04.a2m.gz # 1p3dA.t04.a2m with 1287 sequences, total weight= 1287 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10124 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p3dA/info/1p3dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p3dA/nostruct-align/1p3dA.t04.a2m.gz, have 122490 columns in 504 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t04.a2m.gz # 1d0qA.t04.a2m with 225 sequences, total weight= 22.4323 avg weight= 0.099699 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0qA/info/1d0qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t04.a2m.gz, have 122592 columns in 505 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t04.a2m.gz # 2sak.t04.a2m with 19 sequences, total weight= 5.17819 avg weight= 0.272536 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2sak/info/2sak.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t04.a2m.gz, have 122713 columns in 506 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t04.a2m.gz # 1msk.t04.a2m with 132 sequences, total weight= 22.0543 avg weight= 0.167078 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1msk/info/1msk.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t04.a2m.gz, have 123040 columns in 507 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npyA/nostruct-align/1npyA.t04.a2m.gz # 1npyA.t04.a2m with 715 sequences, total weight= 715 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19306 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npyA/info/1npyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1npyA/nostruct-align/1npyA.t04.a2m.gz, have 123309 columns in 508 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t04.a2m.gz # 1dkiA.t04.a2m with 29 sequences, total weight= 8.15993 avg weight= 0.281377 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dkiA/info/1dkiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t04.a2m.gz, have 123612 columns in 509 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fs7A/nostruct-align/1fs7A.t04.a2m.gz # 1fs7A.t04.a2m with 375 sequences, total weight= 375 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.93649 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fs7A/info/1fs7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fs7A/nostruct-align/1fs7A.t04.a2m.gz, have 124083 columns in 510 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eazA/nostruct-align/1eazA.t04.a2m.gz # 1eazA.t04.a2m with 2131 sequences, total weight= 2131 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.96255 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eazA/info/1eazA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eazA/nostruct-align/1eazA.t04.a2m.gz, have 124186 columns in 511 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1ds1A/nostruct-align/1ds1A.t04.a2m.gz # 1ds1A.t04.a2m with 373 sequences, total weight= 373 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00528 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1ds1A/info/1ds1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1ds1A/nostruct-align/1ds1A.t04.a2m.gz, have 124509 columns in 512 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8qA/nostruct-align/1g8qA.t04.a2m.gz # 1g8qA.t04.a2m with 42 sequences, total weight= 11.2564 avg weight= 0.26801 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8qA/info/1g8qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g8qA/nostruct-align/1g8qA.t04.a2m.gz, have 124599 columns in 513 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c7kA/nostruct-align/1c7kA.t04.a2m.gz # 1c7kA.t04.a2m with 488 sequences, total weight= 100.201 avg weight= 0.205331 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30438 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c7kA/info/1c7kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c7kA/nostruct-align/1c7kA.t04.a2m.gz, have 124731 columns in 514 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t04.a2m.gz # 1mwpA.t04.a2m with 72 sequences, total weight= 4.58139 avg weight= 0.0636304 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mwpA/info/1mwpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t04.a2m.gz, have 124827 columns in 515 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pjxA/nostruct-align/1pjxA.t04.a2m.gz # 1pjxA.t04.a2m with 3802 sequences, total weight= 3802 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.810135 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pjxA/info/1pjxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pjxA/nostruct-align/1pjxA.t04.a2m.gz, have 125141 columns in 516 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kicA/nostruct-align/1kicA.t04.a2m.gz # 1kicA.t04.a2m with 227 sequences, total weight= 182.501 avg weight= 0.80397 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30131 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kicA/info/1kicA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kicA/nostruct-align/1kicA.t04.a2m.gz, have 125458 columns in 517 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t04.a2m.gz # 1npsA.t04.a2m with 7 sequences, total weight= 3.37765 avg weight= 0.482521 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npsA/info/1npsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t04.a2m.gz, have 125546 columns in 518 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1xA/nostruct-align/1p1xA.t04.a2m.gz # 1p1xA.t04.a2m with 188 sequences, total weight= 35.6597 avg weight= 0.189679 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1xA/info/1p1xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p1xA/nostruct-align/1p1xA.t04.a2m.gz, have 125796 columns in 519 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jndA/nostruct-align/1jndA.t04.a2m.gz # 1jndA.t04.a2m with 1168 sequences, total weight= 1168 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10472 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jndA/info/1jndA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jndA/nostruct-align/1jndA.t04.a2m.gz, have 126196 columns in 520 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kw4A/nostruct-align/1kw4A.t04.a2m.gz # 1kw4A.t04.a2m with 123 sequences, total weight= 9.95679 avg weight= 0.0809495 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kw4A/info/1kw4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kw4A/nostruct-align/1kw4A.t04.a2m.gz, have 126266 columns in 521 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mj4A/nostruct-align/1mj4A.t04.a2m.gz # 1mj4A.t04.a2m with 510 sequences, total weight= 41.9568 avg weight= 0.0822682 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30126 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mj4A/info/1mj4A.stride-mixed.near-backbone-11 WARNING: skipping a, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1m/1mj4A/nostruct-align/1mj4A.t04.a2m.gz, have 126345 columns in 522 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4jA/nostruct-align/1m4jA.t04.a2m.gz # 1m4jA.t04.a2m with 240 sequences, total weight= 128.645 avg weight= 0.536021 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30215 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4jA/info/1m4jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m4jA/nostruct-align/1m4jA.t04.a2m.gz, have 126478 columns in 523 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwhA/nostruct-align/1rwhA.t04.a2m.gz # 1rwhA.t04.a2m with 102 sequences, total weight= 102 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27567 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwhA/info/1rwhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rwhA/nostruct-align/1rwhA.t04.a2m.gz, have 127232 columns in 524 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j7xA/nostruct-align/1j7xA.t04.a2m.gz # 1j7xA.t04.a2m with 1390 sequences, total weight= 1390 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29588 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j7xA/info/1j7xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j7xA/nostruct-align/1j7xA.t04.a2m.gz, have 127534 columns in 525 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mnnA/nostruct-align/1mnnA.t04.a2m.gz # 1mnnA.t04.a2m with 30 sequences, total weight= 21.3052 avg weight= 0.710174 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mnnA/info/1mnnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mnnA/nostruct-align/1mnnA.t04.a2m.gz, have 127824 columns in 526 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mdoA/nostruct-align/1mdoA.t04.a2m.gz # 1mdoA.t04.a2m with 3003 sequences, total weight= 3003 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03852 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mdoA/info/1mdoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mdoA/nostruct-align/1mdoA.t04.a2m.gz, have 128189 columns in 527 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9lA/nostruct-align/1r9lA.t04.a2m.gz # 1r9lA.t04.a2m with 909 sequences, total weight= 909 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.989149 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9lA/info/1r9lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r9lA/nostruct-align/1r9lA.t04.a2m.gz, have 128498 columns in 528 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1mA/nostruct-align/1f1mA.t04.a2m.gz # 1f1mA.t04.a2m with 339 sequences, total weight= 5.77715 avg weight= 0.0170417 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1mA/info/1f1mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f1mA/nostruct-align/1f1mA.t04.a2m.gz, have 128660 columns in 529 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkkA/nostruct-align/1vkkA.t04.a2m.gz # 1vkkA.t04.a2m with 300 sequences, total weight= 129.017 avg weight= 0.430056 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30409 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkkA/info/1vkkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vkkA/nostruct-align/1vkkA.t04.a2m.gz, have 128797 columns in 530 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pp0A/nostruct-align/1pp0A.t04.a2m.gz # 1pp0A.t04.a2m with 20 sequences, total weight= 6.72869 avg weight= 0.336434 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pp0A/info/1pp0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pp0A/nostruct-align/1pp0A.t04.a2m.gz, have 128988 columns in 531 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2qA/nostruct-align/1r2qA.t04.a2m.gz # 1r2qA.t04.a2m with 3053 sequences, total weight= 1534.85 avg weight= 0.502735 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32049 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2qA/info/1r2qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r2qA/nostruct-align/1r2qA.t04.a2m.gz, have 129158 columns in 532 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h5qA/nostruct-align/1h5qA.t04.a2m.gz # 1h5qA.t04.a2m with 3028 sequences, total weight= 114.2 avg weight= 0.0377145 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.324 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h5qA/info/1h5qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h5qA/nostruct-align/1h5qA.t04.a2m.gz, have 129418 columns in 533 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kgsA/nostruct-align/1kgsA.t04.a2m.gz # 1kgsA.t04.a2m with 3080 sequences, total weight= 2069.62 avg weight= 0.671954 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31223 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kgsA/info/1kgsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kgsA/nostruct-align/1kgsA.t04.a2m.gz, have 129637 columns in 534 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwiA/nostruct-align/1rwiA.t04.a2m.gz # 1rwiA.t04.a2m with 3959 sequences, total weight= 3959 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.900649 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwiA/info/1rwiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rwiA/nostruct-align/1rwiA.t04.a2m.gz, have 129893 columns in 535 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t04.a2m.gz # 1tyv.t04.a2m with 17 sequences, total weight= 2.62829 avg weight= 0.154605 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tyv/info/1tyv.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t04.a2m.gz, have 130435 columns in 536 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqhA/nostruct-align/1tqhA.t04.a2m.gz # 1tqhA.t04.a2m with 3002 sequences, total weight= 3002 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.864061 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqhA/info/1tqhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tqhA/nostruct-align/1tqhA.t04.a2m.gz, have 130677 columns in 537 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54H/nostruct-align/1v54H.t04.a2m.gz # 1v54H.t04.a2m with 46 sequences, total weight= 6.43278 avg weight= 0.139843 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54H/info/1v54H.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v54H/nostruct-align/1v54H.t04.a2m.gz, have 130756 columns in 538 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u14A/nostruct-align/1u14A.t04.a2m.gz # 1u14A.t04.a2m with 44 sequences, total weight= 12.4775 avg weight= 0.28358 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u14A/info/1u14A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u14A/nostruct-align/1u14A.t04.a2m.gz, have 130925 columns in 539 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t04.a2m.gz # 1chd.t04.a2m with 230 sequences, total weight= 27.4832 avg weight= 0.119492 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1chd/info/1chd.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t04.a2m.gz, have 131123 columns in 540 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t04.a2m.gz # 1fdr.t04.a2m with 1805 sequences, total weight= 1805 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04953 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fdr/info/1fdr.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t04.a2m.gz, have 131367 columns in 541 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t04.a2m.gz # 1a3c.t04.a2m with 974 sequences, total weight= 974 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0974 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a3c/info/1a3c.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t04.a2m.gz, have 131533 columns in 542 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ox0A/nostruct-align/1ox0A.t04.a2m.gz # 1ox0A.t04.a2m with 2775 sequences, total weight= 2775 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27998 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ox0A/info/1ox0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ox0A/nostruct-align/1ox0A.t04.a2m.gz, have 131947 columns in 543 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t04.a2m.gz # 1bx4A.t04.a2m with 1647 sequences, total weight= 1647 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01184 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bx4A/info/1bx4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t04.a2m.gz, have 132289 columns in 544 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t04.a2m.gz # 2tpsA.t04.a2m with 2899 sequences, total weight= 2899 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.874778 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tpsA/info/2tpsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t04.a2m.gz, have 132515 columns in 545 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t04.a2m.gz # 1dbwA.t04.a2m with 3178 sequences, total weight= 119.021 avg weight= 0.0374514 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33474 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dbwA/info/1dbwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t04.a2m.gz, have 132638 columns in 546 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jkxA/nostruct-align/1jkxA.t04.a2m.gz # 1jkxA.t04.a2m with 702 sequences, total weight= 575.218 avg weight= 0.819399 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30429 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jkxA/info/1jkxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jkxA/nostruct-align/1jkxA.t04.a2m.gz, have 132847 columns in 547 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ia8A/nostruct-align/1ia8A.t04.a2m.gz # 1ia8A.t04.a2m with 3090 sequences, total weight= 50.3844 avg weight= 0.0163056 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30843 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ia8A/info/1ia8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ia8A/nostruct-align/1ia8A.t04.a2m.gz, have 133119 columns in 548 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t04.a2m.gz # 1opd.t04.a2m with 265 sequences, total weight= 21.8495 avg weight= 0.082451 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1opd/info/1opd.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t04.a2m.gz, have 133204 columns in 549 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl7A/nostruct-align/1vl7A.t04.a2m.gz # 1vl7A.t04.a2m with 303 sequences, total weight= 303 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0512 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl7A/info/1vl7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vl7A/nostruct-align/1vl7A.t04.a2m.gz, have 133339 columns in 550 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qkrA/nostruct-align/1qkrA.t04.a2m.gz # 1qkrA.t04.a2m with 90 sequences, total weight= 13.4237 avg weight= 0.149153 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qkrA/info/1qkrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qkrA/nostruct-align/1qkrA.t04.a2m.gz, have 133520 columns in 551 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ui0A/nostruct-align/1ui0A.t04.a2m.gz # 1ui0A.t04.a2m with 213 sequences, total weight= 180.316 avg weight= 0.846554 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30103 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ui0A/info/1ui0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ui0A/nostruct-align/1ui0A.t04.a2m.gz, have 133712 columns in 552 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m45A/nostruct-align/1m45A.t04.a2m.gz # 1m45A.t04.a2m with 2931 sequences, total weight= 2931 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09669 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m45A/info/1m45A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m45A/nostruct-align/1m45A.t04.a2m.gz, have 133854 columns in 553 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqoA/nostruct-align/1mqoA.t04.a2m.gz # 1mqoA.t04.a2m with 2718 sequences, total weight= 2718 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.823903 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqoA/info/1mqoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mqoA/nostruct-align/1mqoA.t04.a2m.gz, have 134075 columns in 554 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5nA/nostruct-align/1k5nA.t04.a2m.gz # 1k5nA.t04.a2m with 3011 sequences, total weight= 13.5212 avg weight= 0.0044906 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5nA/info/1k5nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k5nA/nostruct-align/1k5nA.t04.a2m.gz, have 134351 columns in 555 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nxuA/nostruct-align/1nxuA.t04.a2m.gz # 1nxuA.t04.a2m with 128 sequences, total weight= 28.5091 avg weight= 0.222728 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nxuA/info/1nxuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nxuA/nostruct-align/1nxuA.t04.a2m.gz, have 134683 columns in 556 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew0A/nostruct-align/1ew0A.t04.a2m.gz # 1ew0A.t04.a2m with 4921 sequences, total weight= 4921 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.831036 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew0A/info/1ew0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ew0A/nostruct-align/1ew0A.t04.a2m.gz, have 134813 columns in 557 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lf7A/nostruct-align/1lf7A.t04.a2m.gz # 1lf7A.t04.a2m with 561 sequences, total weight= 561 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970493 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lf7A/info/1lf7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lf7A/nostruct-align/1lf7A.t04.a2m.gz, have 134977 columns in 558 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e30A/nostruct-align/1e30A.t04.a2m.gz # 1e30A.t04.a2m with 414 sequences, total weight= 414 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08104 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e30A/info/1e30A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e30A/nostruct-align/1e30A.t04.a2m.gz, have 135130 columns in 559 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rttA/nostruct-align/1rttA.t04.a2m.gz # 1rttA.t04.a2m with 1116 sequences, total weight= 1116 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.959892 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rttA/info/1rttA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rttA/nostruct-align/1rttA.t04.a2m.gz, have 135304 columns in 560 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t04.a2m.gz # 1cnv.t04.a2m with 1165 sequences, total weight= 1165 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08104 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cnv/info/1cnv.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t04.a2m.gz, have 135587 columns in 561 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tovA/nostruct-align/1tovA.t04.a2m.gz # 1tovA.t04.a2m with 324 sequences, total weight= 52.4835 avg weight= 0.161986 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30195 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tovA/info/1tovA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tovA/nostruct-align/1tovA.t04.a2m.gz, have 135684 columns in 562 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqeA/nostruct-align/1dqeA.t04.a2m.gz # 1dqeA.t04.a2m with 140 sequences, total weight= 72.1558 avg weight= 0.515399 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqeA/info/1dqeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dqeA/nostruct-align/1dqeA.t04.a2m.gz, have 135821 columns in 563 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s7iA/nostruct-align/1s7iA.t04.a2m.gz # 1s7iA.t04.a2m with 75 sequences, total weight= 34.1571 avg weight= 0.455429 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s7iA/info/1s7iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s7iA/nostruct-align/1s7iA.t04.a2m.gz, have 135945 columns in 564 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dypA/nostruct-align/1dypA.t04.a2m.gz # 1dypA.t04.a2m with 500 sequences, total weight= 500 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07954 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dypA/info/1dypA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dypA/nostruct-align/1dypA.t04.a2m.gz, have 136216 columns in 565 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fcyA/nostruct-align/1fcyA.t04.a2m.gz # 1fcyA.t04.a2m with 2032 sequences, total weight= 2032 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.900706 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fcyA/info/1fcyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fcyA/nostruct-align/1fcyA.t04.a2m.gz, have 136452 columns in 566 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t5bA/nostruct-align/1t5bA.t04.a2m.gz # 1t5bA.t04.a2m with 1038 sequences, total weight= 1038 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.98937 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t5bA/info/1t5bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t5bA/nostruct-align/1t5bA.t04.a2m.gz, have 136651 columns in 567 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ej0A/nostruct-align/1ej0A.t04.a2m.gz # 1ej0A.t04.a2m with 1496 sequences, total weight= 1496 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00823 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ej0A/info/1ej0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ej0A/nostruct-align/1ej0A.t04.a2m.gz, have 136831 columns in 568 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ifrA/nostruct-align/1ifrA.t04.a2m.gz # 1ifrA.t04.a2m with 162 sequences, total weight= 27.2831 avg weight= 0.168414 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ifrA/info/1ifrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ifrA/nostruct-align/1ifrA.t04.a2m.gz, have 136944 columns in 569 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u55A/nostruct-align/1u55A.t04.a2m.gz # 1u55A.t04.a2m with 116 sequences, total weight= 64.6173 avg weight= 0.557045 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u55A/info/1u55A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u55A/nostruct-align/1u55A.t04.a2m.gz, have 137132 columns in 570 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gheA/nostruct-align/1gheA.t04.a2m.gz # 1gheA.t04.a2m with 3052 sequences, total weight= 3052 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.778993 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gheA/info/1gheA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gheA/nostruct-align/1gheA.t04.a2m.gz, have 137302 columns in 571 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq6A/nostruct-align/1kq6A.t04.a2m.gz # 1kq6A.t04.a2m with 329 sequences, total weight= 329 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16495 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq6A/info/1kq6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kq6A/nostruct-align/1kq6A.t04.a2m.gz, have 137442 columns in 572 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6xA/nostruct-align/1r6xA.t04.a2m.gz # 1r6xA.t04.a2m with 152 sequences, total weight= 19.3296 avg weight= 0.127168 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6xA/info/1r6xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r6xA/nostruct-align/1r6xA.t04.a2m.gz, have 137828 columns in 573 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6rA/nostruct-align/1l6rA.t04.a2m.gz # 1l6rA.t04.a2m with 3001 sequences, total weight= 3001 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.995501 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6rA/info/1l6rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l6rA/nostruct-align/1l6rA.t04.a2m.gz, have 138053 columns in 574 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qtnA/nostruct-align/1qtnA.t04.a2m.gz # 1qtnA.t04.a2m with 252 sequences, total weight= 33.4236 avg weight= 0.132633 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qtnA/info/1qtnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qtnA/nostruct-align/1qtnA.t04.a2m.gz, have 138205 columns in 575 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t04.a2m.gz # 3sdhA.t04.a2m with 1961 sequences, total weight= 1961 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27181 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3sdhA/info/3sdhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t04.a2m.gz, have 138350 columns in 576 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e1hA/nostruct-align/1e1hA.t04.a2m.gz # 1e1hA.t04.a2m with 92 sequences, total weight= 8.00641 avg weight= 0.0870262 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e1hA/info/1e1hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e1hA/nostruct-align/1e1hA.t04.a2m.gz, have 138585 columns in 577 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nepA/nostruct-align/1nepA.t04.a2m.gz # 1nepA.t04.a2m with 84 sequences, total weight= 65.8911 avg weight= 0.784418 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nepA/info/1nepA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nepA/nostruct-align/1nepA.t04.a2m.gz, have 138715 columns in 578 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s2wA/nostruct-align/1s2wA.t04.a2m.gz # 1s2wA.t04.a2m with 519 sequences, total weight= 182.977 avg weight= 0.352557 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30894 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s2wA/info/1s2wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s2wA/nostruct-align/1s2wA.t04.a2m.gz, have 138973 columns in 579 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u60A/nostruct-align/1u60A.t04.a2m.gz # 1u60A.t04.a2m with 155 sequences, total weight= 21.4874 avg weight= 0.138628 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u60A/info/1u60A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u60A/nostruct-align/1u60A.t04.a2m.gz, have 139282 columns in 580 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jg1A/nostruct-align/1jg1A.t04.a2m.gz # 1jg1A.t04.a2m with 3033 sequences, total weight= 3033 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.795019 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jg1A/info/1jg1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jg1A/nostruct-align/1jg1A.t04.a2m.gz, have 139497 columns in 581 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f3uB/nostruct-align/1f3uB.t04.a2m.gz # 1f3uB.t04.a2m with 19 sequences, total weight= 4.52903 avg weight= 0.23837 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f3uB/info/1f3uB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f3uB/nostruct-align/1f3uB.t04.a2m.gz, have 139636 columns in 582 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mxiA/nostruct-align/1mxiA.t04.a2m.gz # 1mxiA.t04.a2m with 750 sequences, total weight= 750 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2824 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mxiA/info/1mxiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mxiA/nostruct-align/1mxiA.t04.a2m.gz, have 139792 columns in 583 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tbfA/nostruct-align/1tbfA.t04.a2m.gz # 1tbfA.t04.a2m with 472 sequences, total weight= 48.3363 avg weight= 0.102407 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30068 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tbfA/info/1tbfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tbfA/nostruct-align/1tbfA.t04.a2m.gz, have 140118 columns in 584 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rh6A/nostruct-align/1rh6A.t04.a2m.gz # 1rh6A.t04.a2m with 10 sequences, total weight= 4.43055 avg weight= 0.443055 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rh6A/info/1rh6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rh6A/nostruct-align/1rh6A.t04.a2m.gz, have 140173 columns in 585 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oboA/nostruct-align/1oboA.t04.a2m.gz # 1oboA.t04.a2m with 999 sequences, total weight= 999 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03941 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oboA/info/1oboA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oboA/nostruct-align/1oboA.t04.a2m.gz, have 140342 columns in 586 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfxA/nostruct-align/1jfxA.t04.a2m.gz # 1jfxA.t04.a2m with 176 sequences, total weight= 176 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24126 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfxA/info/1jfxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jfxA/nostruct-align/1jfxA.t04.a2m.gz, have 140559 columns in 587 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f86A/nostruct-align/1f86A.t04.a2m.gz # 1f86A.t04.a2m with 129 sequences, total weight= 11.6417 avg weight= 0.090246 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f86A/info/1f86A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f86A/nostruct-align/1f86A.t04.a2m.gz, have 140674 columns in 588 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4iA/nostruct-align/1m4iA.t04.a2m.gz # 1m4iA.t04.a2m with 3016 sequences, total weight= 3016 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.8421 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4iA/info/1m4iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m4iA/nostruct-align/1m4iA.t04.a2m.gz, have 140855 columns in 589 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwnA/nostruct-align/1qwnA.t04.a2m.gz # 1qwnA.t04.a2m with 231 sequences, total weight= 231 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16528 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwnA/info/1qwnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qwnA/nostruct-align/1qwnA.t04.a2m.gz, have 141869 columns in 590 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iuqA/nostruct-align/1iuqA.t04.a2m.gz # 1iuqA.t04.a2m with 704 sequences, total weight= 704 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.995175 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iuqA/info/1iuqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iuqA/nostruct-align/1iuqA.t04.a2m.gz, have 142226 columns in 591 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v2zA/nostruct-align/1v2zA.t04.a2m.gz # 1v2zA.t04.a2m with 14 sequences, total weight= 3.6025 avg weight= 0.257321 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v2zA/info/1v2zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v2zA/nostruct-align/1v2zA.t04.a2m.gz, have 142332 columns in 592 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nqzA/nostruct-align/1nqzA.t04.a2m.gz # 1nqzA.t04.a2m with 2111 sequences, total weight= 2111 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.799195 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nqzA/info/1nqzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nqzA/nostruct-align/1nqzA.t04.a2m.gz, have 142503 columns in 593 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kafA/nostruct-align/1kafA.t04.a2m.gz # 1kafA.t04.a2m with 4 sequences, total weight= 2.61866 avg weight= 0.654666 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kafA/info/1kafA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kafA/nostruct-align/1kafA.t04.a2m.gz, have 142611 columns in 594 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t04.a2m.gz # 2eng.t04.a2m with 47 sequences, total weight= 5.26778 avg weight= 0.11208 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2e/2eng/info/2eng.stride-mixed.near-backbone-11 WARNING: skipping f, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t04.a2m.gz, have 142816 columns in 595 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogoX/nostruct-align/1ogoX.t04.a2m.gz # 1ogoX.t04.a2m with 10 sequences, total weight= 3.72303 avg weight= 0.372303 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogoX/info/1ogoX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ogoX/nostruct-align/1ogoX.t04.a2m.gz, have 143388 columns in 596 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9wA/nostruct-align/1o9wA.t04.a2m.gz # 1o9wA.t04.a2m with 13 sequences, total weight= 1.88304 avg weight= 0.144849 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9wA/info/1o9wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o9wA/nostruct-align/1o9wA.t04.a2m.gz, have 143557 columns in 597 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ku3A/nostruct-align/1ku3A.t04.a2m.gz # 1ku3A.t04.a2m with 551 sequences, total weight= 11.2027 avg weight= 0.0203317 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ku3A/info/1ku3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1ku3A/nostruct-align/1ku3A.t04.a2m.gz, have 143618 columns in 598 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q0rA/nostruct-align/1q0rA.t04.a2m.gz # 1q0rA.t04.a2m with 3008 sequences, total weight= 3008 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.763206 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q0rA/info/1q0rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q0rA/nostruct-align/1q0rA.t04.a2m.gz, have 143915 columns in 599 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fr2A/nostruct-align/1fr2A.t04.a2m.gz # 1fr2A.t04.a2m with 42 sequences, total weight= 4.98224 avg weight= 0.118625 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fr2A/info/1fr2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fr2A/nostruct-align/1fr2A.t04.a2m.gz, have 143998 columns in 600 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m70A/nostruct-align/1m70A.t04.a2m.gz # 1m70A.t04.a2m with 1033 sequences, total weight= 1033 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.986621 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m70A/info/1m70A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m70A/nostruct-align/1m70A.t04.a2m.gz, have 144188 columns in 601 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t04.a2m.gz # 1qg8A.t04.a2m with 3119 sequences, total weight= 3119 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.893743 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qg8A/info/1qg8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t04.a2m.gz, have 144426 columns in 602 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gveA/nostruct-align/1gveA.t04.a2m.gz # 1gveA.t04.a2m with 1760 sequences, total weight= 1760 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26607 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gveA/info/1gveA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gveA/nostruct-align/1gveA.t04.a2m.gz, have 144750 columns in 603 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lm5A/nostruct-align/1lm5A.t04.a2m.gz # 1lm5A.t04.a2m with 431 sequences, total weight= 129.51 avg weight= 0.300487 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30373 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lm5A/info/1lm5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lm5A/nostruct-align/1lm5A.t04.a2m.gz, have 144939 columns in 604 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p90A/nostruct-align/1p90A.t04.a2m.gz # 1p90A.t04.a2m with 180 sequences, total weight= 180 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18492 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p90A/info/1p90A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p90A/nostruct-align/1p90A.t04.a2m.gz, have 145062 columns in 605 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lq9A/nostruct-align/1lq9A.t04.a2m.gz # 1lq9A.t04.a2m with 53 sequences, total weight= 53 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20313 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lq9A/info/1lq9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lq9A/nostruct-align/1lq9A.t04.a2m.gz, have 145174 columns in 606 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuyA/nostruct-align/1uuyA.t04.a2m.gz # 1uuyA.t04.a2m with 686 sequences, total weight= 686 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27831 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuyA/info/1uuyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uuyA/nostruct-align/1uuyA.t04.a2m.gz, have 145335 columns in 607 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t04.a2m.gz # 1zin.t04.a2m with 2832 sequences, total weight= 2832 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.878421 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1zin/info/1zin.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t04.a2m.gz, have 145552 columns in 608 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pz7A/nostruct-align/1pz7A.t04.a2m.gz # 1pz7A.t04.a2m with 1511 sequences, total weight= 1511 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.944556 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pz7A/info/1pz7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pz7A/nostruct-align/1pz7A.t04.a2m.gz, have 145740 columns in 609 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l5oA/nostruct-align/1l5oA.t04.a2m.gz # 1l5oA.t04.a2m with 139 sequences, total weight= 39.3431 avg weight= 0.283044 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l5oA/info/1l5oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l5oA/nostruct-align/1l5oA.t04.a2m.gz, have 146086 columns in 610 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t04.a2m.gz # 1d4aA.t04.a2m with 940 sequences, total weight= 940 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10385 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4aA/info/1d4aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t04.a2m.gz, have 146359 columns in 611 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s3eA/nostruct-align/1s3eA.t04.a2m.gz # 1s3eA.t04.a2m with 3004 sequences, total weight= 3004 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.951479 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s3eA/info/1s3eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s3eA/nostruct-align/1s3eA.t04.a2m.gz, have 146858 columns in 612 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhfA/nostruct-align/1jhfA.t04.a2m.gz # 1jhfA.t04.a2m with 480 sequences, total weight= 480 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08799 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhfA/info/1jhfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jhfA/nostruct-align/1jhfA.t04.a2m.gz, have 147055 columns in 613 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rgzA/nostruct-align/1rgzA.t04.a2m.gz # 1rgzA.t04.a2m with 852 sequences, total weight= 852 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03703 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rgzA/info/1rgzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rgzA/nostruct-align/1rgzA.t04.a2m.gz, have 147418 columns in 614 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t04.a2m.gz # 1mla.t04.a2m with 1413 sequences, total weight= 1413 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27034 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mla/info/1mla.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t04.a2m.gz, have 147723 columns in 615 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9vA/nostruct-align/1f9vA.t04.a2m.gz # 1f9vA.t04.a2m with 1069 sequences, total weight= 44.5977 avg weight= 0.0417191 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30134 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9vA/info/1f9vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f9vA/nostruct-align/1f9vA.t04.a2m.gz, have 148036 columns in 616 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n8kA/nostruct-align/1n8kA.t04.a2m.gz # 1n8kA.t04.a2m with 3031 sequences, total weight= 3005.7 avg weight= 0.991653 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n8kA/info/1n8kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n8kA/nostruct-align/1n8kA.t04.a2m.gz, have 148410 columns in 617 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jx4A/nostruct-align/1jx4A.t04.a2m.gz # 1jx4A.t04.a2m with 494 sequences, total weight= 263.798 avg weight= 0.534004 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30731 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jx4A/info/1jx4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jx4A/nostruct-align/1jx4A.t04.a2m.gz, have 148751 columns in 618 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n97A/nostruct-align/1n97A.t04.a2m.gz # 1n97A.t04.a2m with 3018 sequences, total weight= 3018 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20405 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n97A/info/1n97A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n97A/nostruct-align/1n97A.t04.a2m.gz, have 149136 columns in 619 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k92A/nostruct-align/1k92A.t04.a2m.gz # 1k92A.t04.a2m with 1498 sequences, total weight= 1498 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14513 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k92A/info/1k92A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k92A/nostruct-align/1k92A.t04.a2m.gz, have 149580 columns in 620 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pkhA/nostruct-align/1pkhA.t04.a2m.gz # 1pkhA.t04.a2m with 708 sequences, total weight= 708 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24767 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pkhA/info/1pkhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pkhA/nostruct-align/1pkhA.t04.a2m.gz, have 149762 columns in 621 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q3oA/nostruct-align/1q3oA.t04.a2m.gz # 1q3oA.t04.a2m with 2435 sequences, total weight= 2435 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20324 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q3oA/info/1q3oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q3oA/nostruct-align/1q3oA.t04.a2m.gz, have 149866 columns in 622 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqrA/nostruct-align/1kqrA.t04.a2m.gz # 1kqrA.t04.a2m with 332 sequences, total weight= 7.34234 avg weight= 0.0221155 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqrA/info/1kqrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kqrA/nostruct-align/1kqrA.t04.a2m.gz, have 150026 columns in 623 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t04.a2m.gz # 1euvA.t04.a2m with 592 sequences, total weight= 592 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.978358 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1euvA/info/1euvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t04.a2m.gz, have 150247 columns in 624 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d3gA/nostruct-align/1d3gA.t04.a2m.gz # 1d3gA.t04.a2m with 2594 sequences, total weight= 2594 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.965693 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d3gA/info/1d3gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d3gA/nostruct-align/1d3gA.t04.a2m.gz, have 150607 columns in 625 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uufA/nostruct-align/1uufA.t04.a2m.gz # 1uufA.t04.a2m with 3029 sequences, total weight= 2565.37 avg weight= 0.846936 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30515 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uufA/info/1uufA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uufA/nostruct-align/1uufA.t04.a2m.gz, have 150946 columns in 626 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1it2A/nostruct-align/1it2A.t04.a2m.gz # 1it2A.t04.a2m with 1850 sequences, total weight= 1732.73 avg weight= 0.93661 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30191 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1it2A/info/1it2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1it2A/nostruct-align/1it2A.t04.a2m.gz, have 151092 columns in 627 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t04.a2m.gz # 1qb7A.t04.a2m with 2259 sequences, total weight= 2259 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00759 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qb7A/info/1qb7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t04.a2m.gz, have 151328 columns in 628 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nn5A/nostruct-align/1nn5A.t04.a2m.gz # 1nn5A.t04.a2m with 3055 sequences, total weight= 3055 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24362 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nn5A/info/1nn5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nn5A/nostruct-align/1nn5A.t04.a2m.gz, have 151532 columns in 629 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucrA/nostruct-align/1ucrA.t04.a2m.gz # 1ucrA.t04.a2m with 13 sequences, total weight= 5.72544 avg weight= 0.440418 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucrA/info/1ucrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ucrA/nostruct-align/1ucrA.t04.a2m.gz, have 151606 columns in 630 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s95A/nostruct-align/1s95A.t04.a2m.gz # 1s95A.t04.a2m with 1196 sequences, total weight= 1196 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11716 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s95A/info/1s95A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s95A/nostruct-align/1s95A.t04.a2m.gz, have 151930 columns in 631 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jykA/nostruct-align/1jykA.t04.a2m.gz # 1jykA.t04.a2m with 2323 sequences, total weight= 2323 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02821 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jykA/info/1jykA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jykA/nostruct-align/1jykA.t04.a2m.gz, have 152159 columns in 632 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t04.a2m.gz # 1qazA.t04.a2m with 41 sequences, total weight= 41 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22736 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qazA/info/1qazA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t04.a2m.gz, have 152510 columns in 633 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pkoA/nostruct-align/1pkoA.t04.a2m.gz # 1pkoA.t04.a2m with 3201 sequences, total weight= 22.8035 avg weight= 0.00712388 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pkoA/info/1pkoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pkoA/nostruct-align/1pkoA.t04.a2m.gz, have 152634 columns in 634 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n9eA/nostruct-align/1n9eA.t04.a2m.gz # 1n9eA.t04.a2m with 147 sequences, total weight= 66.9237 avg weight= 0.455263 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n9eA/info/1n9eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n9eA/nostruct-align/1n9eA.t04.a2m.gz, have 153369 columns in 635 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l8bA/nostruct-align/1l8bA.t04.a2m.gz # 1l8bA.t04.a2m with 145 sequences, total weight= 40.4179 avg weight= 0.278744 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l8bA/info/1l8bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l8bA/nostruct-align/1l8bA.t04.a2m.gz, have 153546 columns in 636 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1go3F/nostruct-align/1go3F.t04.a2m.gz # 1go3F.t04.a2m with 24 sequences, total weight= 16.7889 avg weight= 0.699536 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1go3F/info/1go3F.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1go3F/nostruct-align/1go3F.t04.a2m.gz, have 153653 columns in 637 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rcqA/nostruct-align/1rcqA.t04.a2m.gz # 1rcqA.t04.a2m with 1066 sequences, total weight= 1066 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10284 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rcqA/info/1rcqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rcqA/nostruct-align/1rcqA.t04.a2m.gz, have 154010 columns in 638 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkeA/nostruct-align/1vkeA.t04.a2m.gz # 1vkeA.t04.a2m with 356 sequences, total weight= 356 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27805 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkeA/info/1vkeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vkeA/nostruct-align/1vkeA.t04.a2m.gz, have 154127 columns in 639 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t04.a2m.gz # 1kp6A.t04.a2m with 6 sequences, total weight= 1.71336 avg weight= 0.28556 6 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kp6A/info/1kp6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t04.a2m.gz, have 154206 columns in 640 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e5kA/nostruct-align/1e5kA.t04.a2m.gz # 1e5kA.t04.a2m with 2370 sequences, total weight= 2370 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01509 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e5kA/info/1e5kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e5kA/nostruct-align/1e5kA.t04.a2m.gz, have 154394 columns in 641 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t04.a2m.gz # 1kveA.t04.a2m with 4 sequences, total weight= 1.63532 avg weight= 0.408831 8 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kveA/info/1kveA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t04.a2m.gz, have 154457 columns in 642 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eajA/nostruct-align/1eajA.t04.a2m.gz # 1eajA.t04.a2m with 3181 sequences, total weight= 14.587 avg weight= 0.00458565 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eajA/info/1eajA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eajA/nostruct-align/1eajA.t04.a2m.gz, have 154581 columns in 643 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t04.a2m.gz # 1pgs.t04.a2m with 10 sequences, total weight= 3.80667 avg weight= 0.380667 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pgs/info/1pgs.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t04.a2m.gz, have 154892 columns in 644 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pe9A/nostruct-align/1pe9A.t04.a2m.gz # 1pe9A.t04.a2m with 257 sequences, total weight= 130.465 avg weight= 0.507646 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30143 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pe9A/info/1pe9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pe9A/nostruct-align/1pe9A.t04.a2m.gz, have 155253 columns in 645 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t04.a2m.gz # 2ayh.t04.a2m with 499 sequences, total weight= 499 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13456 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2ayh/info/2ayh.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t04.a2m.gz, have 155467 columns in 646 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qqqA/nostruct-align/1qqqA.t04.a2m.gz # 1qqqA.t04.a2m with 381 sequences, total weight= 32.5091 avg weight= 0.0853258 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qqqA/info/1qqqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qqqA/nostruct-align/1qqqA.t04.a2m.gz, have 155731 columns in 647 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucdA/nostruct-align/1ucdA.t04.a2m.gz # 1ucdA.t04.a2m with 616 sequences, total weight= 107.61 avg weight= 0.174692 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30587 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucdA/info/1ucdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ucdA/nostruct-align/1ucdA.t04.a2m.gz, have 155921 columns in 648 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t04.a2m.gz # 1uxy.t04.a2m with 1187 sequences, total weight= 1187 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01121 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxy/info/1uxy.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t04.a2m.gz, have 156261 columns in 649 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t04.a2m.gz # 1avwB.t04.a2m with 252 sequences, total weight= 40.4509 avg weight= 0.16052 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1avwB/info/1avwB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t04.a2m.gz, have 156432 columns in 650 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k07A/nostruct-align/1k07A.t04.a2m.gz # 1k07A.t04.a2m with 2782 sequences, total weight= 2782 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.771845 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k07A/info/1k07A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k07A/nostruct-align/1k07A.t04.a2m.gz, have 156694 columns in 651 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q52A/nostruct-align/1q52A.t04.a2m.gz # 1q52A.t04.a2m with 1786 sequences, total weight= 1786 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11685 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q52A/info/1q52A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q52A/nostruct-align/1q52A.t04.a2m.gz, have 156963 columns in 652 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fxoA/nostruct-align/1fxoA.t04.a2m.gz # 1fxoA.t04.a2m with 2325 sequences, total weight= 2325 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03117 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fxoA/info/1fxoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fxoA/nostruct-align/1fxoA.t04.a2m.gz, have 157255 columns in 653 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1od3A/nostruct-align/1od3A.t04.a2m.gz # 1od3A.t04.a2m with 151 sequences, total weight= 84.7571 avg weight= 0.561305 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30067 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1od3A/info/1od3A.stride-mixed.near-backbone-11 WARNING: skipping e, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1o/1od3A/nostruct-align/1od3A.t04.a2m.gz, have 157386 columns in 654 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwyA/nostruct-align/1qwyA.t04.a2m.gz # 1qwyA.t04.a2m with 1122 sequences, total weight= 1122 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0179 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwyA/info/1qwyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qwyA/nostruct-align/1qwyA.t04.a2m.gz, have 157620 columns in 655 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jigA/nostruct-align/1jigA.t04.a2m.gz # 1jigA.t04.a2m with 367 sequences, total weight= 367 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29866 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jigA/info/1jigA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jigA/nostruct-align/1jigA.t04.a2m.gz, have 157766 columns in 656 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t04.a2m.gz # 1iibA.t04.a2m with 128 sequences, total weight= 20.0604 avg weight= 0.156722 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iibA/info/1iibA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t04.a2m.gz, have 157869 columns in 657 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t04.a2m.gz # 1dcs.t04.a2m with 905 sequences, total weight= 395.837 avg weight= 0.437389 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31411 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dcs/info/1dcs.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t04.a2m.gz, have 158148 columns in 658 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mnaA/nostruct-align/1mnaA.t04.a2m.gz # 1mnaA.t04.a2m with 3010 sequences, total weight= 3010 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.887619 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mnaA/info/1mnaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mnaA/nostruct-align/1mnaA.t04.a2m.gz, have 158424 columns in 659 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1suuA/nostruct-align/1suuA.t04.a2m.gz # 1suuA.t04.a2m with 420 sequences, total weight= 79.2142 avg weight= 0.188605 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30219 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1suuA/info/1suuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1suuA/nostruct-align/1suuA.t04.a2m.gz, have 158717 columns in 660 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfdA/nostruct-align/1sfdA.t04.a2m.gz # 1sfdA.t04.a2m with 590 sequences, total weight= 590 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06596 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfdA/info/1sfdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sfdA/nostruct-align/1sfdA.t04.a2m.gz, have 158822 columns in 661 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0vA/nostruct-align/1i0vA.t04.a2m.gz # 1i0vA.t04.a2m with 80 sequences, total weight= 8.23317 avg weight= 0.102915 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0vA/info/1i0vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i0vA/nostruct-align/1i0vA.t04.a2m.gz, have 158926 columns in 662 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3b/3bamA/nostruct-align/3bamA.t04.a2m.gz # 3bamA.t04.a2m with 4 sequences, total weight= 3.20925 avg weight= 0.802312 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3b/3bamA/info/3bamA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3b/3bamA/nostruct-align/3bamA.t04.a2m.gz, have 159132 columns in 663 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iq4A/nostruct-align/1iq4A.t04.a2m.gz # 1iq4A.t04.a2m with 351 sequences, total weight= 34.7558 avg weight= 0.0990194 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iq4A/info/1iq4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iq4A/nostruct-align/1iq4A.t04.a2m.gz, have 159311 columns in 664 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9rA/nostruct-align/1o9rA.t04.a2m.gz # 1o9rA.t04.a2m with 375 sequences, total weight= 375 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22878 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9rA/info/1o9rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o9rA/nostruct-align/1o9rA.t04.a2m.gz, have 159473 columns in 665 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gyxA/nostruct-align/1gyxA.t04.a2m.gz # 1gyxA.t04.a2m with 8 sequences, total weight= 4.27173 avg weight= 0.533966 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gyxA/info/1gyxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gyxA/nostruct-align/1gyxA.t04.a2m.gz, have 159549 columns in 666 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vk1A/nostruct-align/1vk1A.t04.a2m.gz # 1vk1A.t04.a2m with 529 sequences, total weight= 529 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16009 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vk1A/info/1vk1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vk1A/nostruct-align/1vk1A.t04.a2m.gz, have 159781 columns in 667 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t04.a2m.gz # 1t1dA.t04.a2m with 580 sequences, total weight= 47.6786 avg weight= 0.0822045 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30373 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1dA/info/1t1dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t04.a2m.gz, have 159881 columns in 668 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t04.a2m.gz # 2trxA.t04.a2m with 2994 sequences, total weight= 2994 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.982107 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2trxA/info/2trxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t04.a2m.gz, have 159989 columns in 669 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s1dA/nostruct-align/1s1dA.t04.a2m.gz # 1s1dA.t04.a2m with 27 sequences, total weight= 6.04619 avg weight= 0.223933 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s1dA/info/1s1dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s1dA/nostruct-align/1s1dA.t04.a2m.gz, have 160306 columns in 670 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t04.a2m.gz # 1gca.t04.a2m with 1774 sequences, total weight= 1774 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.985044 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gca/info/1gca.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t04.a2m.gz, have 160615 columns in 671 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t04.a2m.gz # 1d3vA.t04.a2m with 342 sequences, total weight= 342 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29276 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d3vA/info/1d3vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t04.a2m.gz, have 160923 columns in 672 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eyhA/nostruct-align/1eyhA.t04.a2m.gz # 1eyhA.t04.a2m with 115 sequences, total weight= 19.7944 avg weight= 0.172125 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eyhA/info/1eyhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eyhA/nostruct-align/1eyhA.t04.a2m.gz, have 161067 columns in 673 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t04.a2m.gz # 1aqzA.t04.a2m with 18 sequences, total weight= 1.94244 avg weight= 0.107913 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aqzA/info/1aqzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t04.a2m.gz, have 161209 columns in 674 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlaA/nostruct-align/1vlaA.t04.a2m.gz # 1vlaA.t04.a2m with 364 sequences, total weight= 364 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18996 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlaA/info/1vlaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vlaA/nostruct-align/1vlaA.t04.a2m.gz, have 161353 columns in 675 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vclA/nostruct-align/1vclA.t04.a2m.gz # 1vclA.t04.a2m with 518 sequences, total weight= 24.1376 avg weight= 0.0465976 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vclA/info/1vclA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vclA/nostruct-align/1vclA.t04.a2m.gz, have 161785 columns in 676 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t04.a2m.gz # 1mfmA.t04.a2m with 570 sequences, total weight= 43.7618 avg weight= 0.076775 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mfmA/info/1mfmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t04.a2m.gz, have 161938 columns in 677 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t04.a2m.gz # 1whi.t04.a2m with 342 sequences, total weight= 16.6414 avg weight= 0.0486591 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1whi/info/1whi.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t04.a2m.gz, have 162060 columns in 678 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ks9A/nostruct-align/1ks9A.t04.a2m.gz # 1ks9A.t04.a2m with 2983 sequences, total weight= 2983 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.883677 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ks9A/info/1ks9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1ks9A/nostruct-align/1ks9A.t04.a2m.gz, have 162351 columns in 679 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t04.a2m.gz # 1vns.t04.a2m with 35 sequences, total weight= 24.3458 avg weight= 0.695594 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vns/info/1vns.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t04.a2m.gz, have 162925 columns in 680 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t04.a2m.gz # 1ayl.t04.a2m with 330 sequences, total weight= 37.4709 avg weight= 0.113548 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ayl/info/1ayl.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t04.a2m.gz, have 163457 columns in 681 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhuA/nostruct-align/1vhuA.t04.a2m.gz # 1vhuA.t04.a2m with 441 sequences, total weight= 369.771 avg weight= 0.838483 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30271 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhuA/info/1vhuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhuA/nostruct-align/1vhuA.t04.a2m.gz, have 163649 columns in 682 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2cA/nostruct-align/1h2cA.t04.a2m.gz # 1h2cA.t04.a2m with 15 sequences, total weight= 2.57852 avg weight= 0.171901 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2cA/info/1h2cA.stride-mixed.near-backbone-11 WARNING: skipping b, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1h/1h2cA/nostruct-align/1h2cA.t04.a2m.gz, have 163773 columns in 683 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t04.a2m.gz # 5nul.t04.a2m with 1090 sequences, total weight= 1090 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0336 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/5n/5nul/info/5nul.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t04.a2m.gz, have 163911 columns in 684 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7jA/nostruct-align/1k7jA.t04.a2m.gz # 1k7jA.t04.a2m with 392 sequences, total weight= 129.736 avg weight= 0.330959 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30625 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7jA/info/1k7jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k7jA/nostruct-align/1k7jA.t04.a2m.gz, have 164117 columns in 685 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqzA/nostruct-align/1gqzA.t04.a2m.gz # 1gqzA.t04.a2m with 426 sequences, total weight= 426 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17947 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqzA/info/1gqzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gqzA/nostruct-align/1gqzA.t04.a2m.gz, have 164391 columns in 686 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxuA/nostruct-align/1gxuA.t04.a2m.gz # 1gxuA.t04.a2m with 232 sequences, total weight= 41.0197 avg weight= 0.176809 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30071 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxuA/info/1gxuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gxuA/nostruct-align/1gxuA.t04.a2m.gz, have 164479 columns in 687 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fiuA/nostruct-align/1fiuA.t04.a2m.gz # 1fiuA.t04.a2m with 5 sequences, total weight= 2.33951 avg weight= 0.467901 8 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fiuA/info/1fiuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fiuA/nostruct-align/1fiuA.t04.a2m.gz, have 164765 columns in 688 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pfvA/nostruct-align/1pfvA.t04.a2m.gz # 1pfvA.t04.a2m with 2483 sequences, total weight= 2483 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0417 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pfvA/info/1pfvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pfvA/nostruct-align/1pfvA.t04.a2m.gz, have 165312 columns in 689 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t04.a2m.gz # 1csh.t04.a2m with 679 sequences, total weight= 101.259 avg weight= 0.149129 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30324 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1csh/info/1csh.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t04.a2m.gz, have 165747 columns in 690 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1jA/nostruct-align/1t1jA.t04.a2m.gz # 1t1jA.t04.a2m with 4 sequences, total weight= 1.87116 avg weight= 0.467789 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1jA/info/1t1jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t1jA/nostruct-align/1t1jA.t04.a2m.gz, have 165866 columns in 691 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oh4A/nostruct-align/1oh4A.t04.a2m.gz # 1oh4A.t04.a2m with 10 sequences, total weight= 6.15362 avg weight= 0.615362 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oh4A/info/1oh4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oh4A/nostruct-align/1oh4A.t04.a2m.gz, have 166040 columns in 692 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1thfD/nostruct-align/1thfD.t04.a2m.gz # 1thfD.t04.a2m with 979 sequences, total weight= 979 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10803 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1thfD/info/1thfD.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1thfD/nostruct-align/1thfD.t04.a2m.gz, have 166293 columns in 693 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t04.a2m.gz # 7a3hA.t04.a2m with 2209 sequences, total weight= 2209 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.840419 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/7a/7a3hA/info/7a3hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t04.a2m.gz, have 166593 columns in 694 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t04.a2m.gz # 1lbu.t04.a2m with 271 sequences, total weight= 271 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09653 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lbu/info/1lbu.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t04.a2m.gz, have 166806 columns in 695 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ejxC/nostruct-align/1ejxC.t04.a2m.gz # 1ejxC.t04.a2m with 1978 sequences, total weight= 1978 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21801 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ejxC/info/1ejxC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ejxC/nostruct-align/1ejxC.t04.a2m.gz, have 167362 columns in 696 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t04.a2m.gz # 1tfe.t04.a2m with 364 sequences, total weight= 48.6842 avg weight= 0.133748 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tfe/info/1tfe.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t04.a2m.gz, have 167504 columns in 697 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t04.a2m.gz # 1d2nA.t04.a2m with 3884 sequences, total weight= 3884 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17855 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2nA/info/1d2nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t04.a2m.gz, have 167750 columns in 698 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t04.a2m.gz # 1qd1A.t04.a2m with 37 sequences, total weight= 8.23335 avg weight= 0.222523 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qd1A/info/1qd1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t04.a2m.gz, have 168069 columns in 699 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogqA/nostruct-align/1ogqA.t04.a2m.gz # 1ogqA.t04.a2m with 4263 sequences, total weight= 4263 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00576 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogqA/info/1ogqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ogqA/nostruct-align/1ogqA.t04.a2m.gz, have 168382 columns in 700 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v6sA/nostruct-align/1v6sA.t04.a2m.gz # 1v6sA.t04.a2m with 489 sequences, total weight= 14.5828 avg weight= 0.0298218 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v6sA/info/1v6sA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v6sA/nostruct-align/1v6sA.t04.a2m.gz, have 168772 columns in 701 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6uA/nostruct-align/1t6uA.t04.a2m.gz # 1t6uA.t04.a2m with 11 sequences, total weight= 3.02291 avg weight= 0.27481 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6uA/info/1t6uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t6uA/nostruct-align/1t6uA.t04.a2m.gz, have 168889 columns in 702 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ekqA/nostruct-align/1ekqA.t04.a2m.gz # 1ekqA.t04.a2m with 1437 sequences, total weight= 1437 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.945002 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ekqA/info/1ekqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ekqA/nostruct-align/1ekqA.t04.a2m.gz, have 169143 columns in 703 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1njhA/nostruct-align/1njhA.t04.a2m.gz # 1njhA.t04.a2m with 11 sequences, total weight= 3.26075 avg weight= 0.296432 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1njhA/info/1njhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1njhA/nostruct-align/1njhA.t04.a2m.gz, have 169251 columns in 704 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xfsA/nostruct-align/1xfsA.t04.a2m.gz # 1xfsA.t04.a2m with 423 sequences, total weight= 423 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.871499 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xfsA/info/1xfsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xfsA/nostruct-align/1xfsA.t04.a2m.gz, have 169405 columns in 705 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lriA/nostruct-align/1lriA.t04.a2m.gz # 1lriA.t04.a2m with 55 sequences, total weight= 5.16673 avg weight= 0.0939406 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lriA/info/1lriA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lriA/nostruct-align/1lriA.t04.a2m.gz, have 169503 columns in 706 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dzkA/nostruct-align/1dzkA.t04.a2m.gz # 1dzkA.t04.a2m with 375 sequences, total weight= 375 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1805 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dzkA/info/1dzkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dzkA/nostruct-align/1dzkA.t04.a2m.gz, have 169651 columns in 707 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhsA/nostruct-align/1vhsA.t04.a2m.gz # 1vhsA.t04.a2m with 3042 sequences, total weight= 3042 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.81868 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhsA/info/1vhsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhsA/nostruct-align/1vhsA.t04.a2m.gz, have 169816 columns in 708 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1muwA/nostruct-align/1muwA.t04.a2m.gz # 1muwA.t04.a2m with 852 sequences, total weight= 852 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02902 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1muwA/info/1muwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1muwA/nostruct-align/1muwA.t04.a2m.gz, have 170202 columns in 709 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orvA/nostruct-align/1orvA.t04.a2m.gz # 1orvA.t04.a2m with 3075 sequences, total weight= 3075 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.880122 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orvA/info/1orvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1orvA/nostruct-align/1orvA.t04.a2m.gz, have 170930 columns in 710 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t04.a2m.gz # 1jhgA.t04.a2m with 54 sequences, total weight= 16.557 avg weight= 0.306611 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhgA/info/1jhgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t04.a2m.gz, have 171031 columns in 711 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0uA/nostruct-align/1r0uA.t04.a2m.gz # 1r0uA.t04.a2m with 29 sequences, total weight= 29 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29682 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0uA/info/1r0uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r0uA/nostruct-align/1r0uA.t04.a2m.gz, have 171173 columns in 712 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ed8A/nostruct-align/1ed8A.t04.a2m.gz # 1ed8A.t04.a2m with 646 sequences, total weight= 646 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05936 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ed8A/info/1ed8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ed8A/nostruct-align/1ed8A.t04.a2m.gz, have 171622 columns in 713 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kngA/nostruct-align/1kngA.t04.a2m.gz # 1kngA.t04.a2m with 3332 sequences, total weight= 3332 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00128 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kngA/info/1kngA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kngA/nostruct-align/1kngA.t04.a2m.gz, have 171766 columns in 714 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmuA/nostruct-align/1gmuA.t04.a2m.gz # 1gmuA.t04.a2m with 113 sequences, total weight= 46.8462 avg weight= 0.414568 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmuA/info/1gmuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gmuA/nostruct-align/1gmuA.t04.a2m.gz, have 171904 columns in 715 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t04.a2m.gz # 1aohA.t04.a2m with 90 sequences, total weight= 11.6904 avg weight= 0.129893 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aohA/info/1aohA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t04.a2m.gz, have 172047 columns in 716 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6gA/nostruct-align/1g6gA.t04.a2m.gz # 1g6gA.t04.a2m with 560 sequences, total weight= 560 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.983163 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6gA/info/1g6gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g6gA/nostruct-align/1g6gA.t04.a2m.gz, have 172174 columns in 717 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t04.a2m.gz # 1din.t04.a2m with 3007 sequences, total weight= 3007 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.838011 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1din/info/1din.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t04.a2m.gz, have 172407 columns in 718 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gyvA/nostruct-align/1gyvA.t04.a2m.gz # 1gyvA.t04.a2m with 93 sequences, total weight= 27.5368 avg weight= 0.296095 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gyvA/info/1gyvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gyvA/nostruct-align/1gyvA.t04.a2m.gz, have 172527 columns in 719 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ls9A/nostruct-align/1ls9A.t04.a2m.gz # 1ls9A.t04.a2m with 1192 sequences, total weight= 1192 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13198 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ls9A/info/1ls9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1ls9A/nostruct-align/1ls9A.t04.a2m.gz, have 172618 columns in 720 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o3uA/nostruct-align/1o3uA.t04.a2m.gz # 1o3uA.t04.a2m with 84 sequences, total weight= 84 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24995 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o3uA/info/1o3uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o3uA/nostruct-align/1o3uA.t04.a2m.gz, have 172738 columns in 721 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e19A/nostruct-align/1e19A.t04.a2m.gz # 1e19A.t04.a2m with 955 sequences, total weight= 955 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19927 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e19A/info/1e19A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e19A/nostruct-align/1e19A.t04.a2m.gz, have 173051 columns in 722 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iujA/nostruct-align/1iujA.t04.a2m.gz # 1iujA.t04.a2m with 277 sequences, total weight= 277 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.982118 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iujA/info/1iujA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iujA/nostruct-align/1iujA.t04.a2m.gz, have 173153 columns in 723 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g5aA/nostruct-align/1g5aA.t04.a2m.gz # 1g5aA.t04.a2m with 2436 sequences, total weight= 2436 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07621 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g5aA/info/1g5aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g5aA/nostruct-align/1g5aA.t04.a2m.gz, have 173781 columns in 724 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jtvA/nostruct-align/1jtvA.t04.a2m.gz # 1jtvA.t04.a2m with 3026 sequences, total weight= 318.181 avg weight= 0.105149 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3315 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jtvA/info/1jtvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jtvA/nostruct-align/1jtvA.t04.a2m.gz, have 174059 columns in 725 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t04.a2m.gz # 1ako.t04.a2m with 1586 sequences, total weight= 1586 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.876891 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ako/info/1ako.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t04.a2m.gz, have 174327 columns in 726 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijyA/nostruct-align/1ijyA.t04.a2m.gz # 1ijyA.t04.a2m with 256 sequences, total weight= 27.3222 avg weight= 0.106727 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijyA/info/1ijyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ijyA/nostruct-align/1ijyA.t04.a2m.gz, have 174449 columns in 727 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nh0A/nostruct-align/1nh0A.t04.a2m.gz # 1nh0A.t04.a2m with 3001 sequences, total weight= 1.98337 avg weight= 0.000660902 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nh0A/info/1nh0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nh0A/nostruct-align/1nh0A.t04.a2m.gz, have 174548 columns in 728 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k2eA/nostruct-align/1k2eA.t04.a2m.gz # 1k2eA.t04.a2m with 2111 sequences, total weight= 2111 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.840533 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k2eA/info/1k2eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k2eA/nostruct-align/1k2eA.t04.a2m.gz, have 174700 columns in 729 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f5nA/nostruct-align/1f5nA.t04.a2m.gz # 1f5nA.t04.a2m with 2263 sequences, total weight= 2263 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.992291 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f5nA/info/1f5nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f5nA/nostruct-align/1f5nA.t04.a2m.gz, have 175270 columns in 730 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuzA/nostruct-align/1uuzA.t04.a2m.gz # 1uuzA.t04.a2m with 16 sequences, total weight= 6.76197 avg weight= 0.422623 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuzA/info/1uuzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uuzA/nostruct-align/1uuzA.t04.a2m.gz, have 175399 columns in 731 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t04.a2m.gz # 1cex.t04.a2m with 231 sequences, total weight= 231 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13891 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cex/info/1cex.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t04.a2m.gz, have 175596 columns in 732 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t04.a2m.gz # 1pdo.t04.a2m with 193 sequences, total weight= 126.724 avg weight= 0.656602 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30235 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pdo/info/1pdo.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t04.a2m.gz, have 175725 columns in 733 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j98A/nostruct-align/1j98A.t04.a2m.gz # 1j98A.t04.a2m with 83 sequences, total weight= 6.75634 avg weight= 0.0814016 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j98A/info/1j98A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j98A/nostruct-align/1j98A.t04.a2m.gz, have 175879 columns in 734 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qqfA/nostruct-align/1qqfA.t04.a2m.gz # 1qqfA.t04.a2m with 498 sequences, total weight= 498 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18153 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qqfA/info/1qqfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qqfA/nostruct-align/1qqfA.t04.a2m.gz, have 176156 columns in 735 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gy7A/nostruct-align/1gy7A.t04.a2m.gz # 1gy7A.t04.a2m with 152 sequences, total weight= 49.3688 avg weight= 0.324795 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3004 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gy7A/info/1gy7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gy7A/nostruct-align/1gy7A.t04.a2m.gz, have 176277 columns in 736 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t04.a2m.gz # 1a3aA.t04.a2m with 567 sequences, total weight= 567 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24256 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a3aA/info/1a3aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t04.a2m.gz, have 176422 columns in 737 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jidA/nostruct-align/1jidA.t04.a2m.gz # 1jidA.t04.a2m with 64 sequences, total weight= 22.6141 avg weight= 0.353346 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jidA/info/1jidA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jidA/nostruct-align/1jidA.t04.a2m.gz, have 176536 columns in 738 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kv7A/nostruct-align/1kv7A.t04.a2m.gz # 1kv7A.t04.a2m with 1115 sequences, total weight= 1115 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12303 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kv7A/info/1kv7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kv7A/nostruct-align/1kv7A.t04.a2m.gz, have 176999 columns in 739 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l2hA/nostruct-align/1l2hA.t04.a2m.gz # 1l2hA.t04.a2m with 191 sequences, total weight= 28.6114 avg weight= 0.149798 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l2hA/info/1l2hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l2hA/nostruct-align/1l2hA.t04.a2m.gz, have 177143 columns in 740 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvdA/nostruct-align/1gvdA.t04.a2m.gz # 1gvdA.t04.a2m with 1749 sequences, total weight= 32.9281 avg weight= 0.0188268 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30058 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvdA/info/1gvdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gvdA/nostruct-align/1gvdA.t04.a2m.gz, have 177195 columns in 741 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w1oA/nostruct-align/1w1oA.t04.a2m.gz # 1w1oA.t04.a2m with 1334 sequences, total weight= 1334 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.875391 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w1oA/info/1w1oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w1oA/nostruct-align/1w1oA.t04.a2m.gz, have 177674 columns in 742 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t04.a2m.gz # 4fiv.t04.a2m with 3002 sequences, total weight= 3.33897 avg weight= 0.00111225 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4f/4fiv/info/4fiv.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t04.a2m.gz, have 177787 columns in 743 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t04.a2m.gz # 1atzA.t04.a2m with 2090 sequences, total weight= 2090 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0137 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1atzA/info/1atzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t04.a2m.gz, have 177971 columns in 744 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kmtA/nostruct-align/1kmtA.t04.a2m.gz # 1kmtA.t04.a2m with 68 sequences, total weight= 13.291 avg weight= 0.195456 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kmtA/info/1kmtA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kmtA/nostruct-align/1kmtA.t04.a2m.gz, have 178109 columns in 745 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v9yA/nostruct-align/1v9yA.t04.a2m.gz # 1v9yA.t04.a2m with 4071 sequences, total weight= 4071 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0654 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v9yA/info/1v9yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v9yA/nostruct-align/1v9yA.t04.a2m.gz, have 178212 columns in 746 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lj8A/nostruct-align/1lj8A.t04.a2m.gz # 1lj8A.t04.a2m with 184 sequences, total weight= 54.1335 avg weight= 0.294204 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lj8A/info/1lj8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lj8A/nostruct-align/1lj8A.t04.a2m.gz, have 178704 columns in 747 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ji1A/nostruct-align/1ji1A.t04.a2m.gz # 1ji1A.t04.a2m with 2365 sequences, total weight= 2365 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03738 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ji1A/info/1ji1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1ji1A/nostruct-align/1ji1A.t04.a2m.gz, have 179341 columns in 748 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6hA/nostruct-align/1h6hA.t04.a2m.gz # 1h6hA.t04.a2m with 418 sequences, total weight= 418 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14882 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6hA/info/1h6hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h6hA/nostruct-align/1h6hA.t04.a2m.gz, have 179484 columns in 749 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ocyA/nostruct-align/1ocyA.t04.a2m.gz # 1ocyA.t04.a2m with 130 sequences, total weight= 129.991 avg weight= 0.999927 4 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ocyA/info/1ocyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ocyA/nostruct-align/1ocyA.t04.a2m.gz, have 179682 columns in 750 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fobA/nostruct-align/1fobA.t04.a2m.gz # 1fobA.t04.a2m with 639 sequences, total weight= 639 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.848708 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fobA/info/1fobA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fobA/nostruct-align/1fobA.t04.a2m.gz, have 180016 columns in 751 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2wA/nostruct-align/1h2wA.t04.a2m.gz # 1h2wA.t04.a2m with 3104 sequences, total weight= 3104 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.886355 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2wA/info/1h2wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h2wA/nostruct-align/1h2wA.t04.a2m.gz, have 180726 columns in 752 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kwgA/nostruct-align/1kwgA.t04.a2m.gz # 1kwgA.t04.a2m with 561 sequences, total weight= 561 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.941901 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kwgA/info/1kwgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kwgA/nostruct-align/1kwgA.t04.a2m.gz, have 181370 columns in 753 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dwkA/nostruct-align/1dwkA.t04.a2m.gz # 1dwkA.t04.a2m with 45 sequences, total weight= 9.70291 avg weight= 0.21562 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dwkA/info/1dwkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dwkA/nostruct-align/1dwkA.t04.a2m.gz, have 181526 columns in 754 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2bA/nostruct-align/1h2bA.t04.a2m.gz # 1h2bA.t04.a2m with 3031 sequences, total weight= 3031 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29394 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2bA/info/1h2bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h2bA/nostruct-align/1h2bA.t04.a2m.gz, have 181869 columns in 755 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uf5A/nostruct-align/1uf5A.t04.a2m.gz # 1uf5A.t04.a2m with 885 sequences, total weight= 885 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07179 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uf5A/info/1uf5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uf5A/nostruct-align/1uf5A.t04.a2m.gz, have 182172 columns in 756 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijbA/nostruct-align/1ijbA.t04.a2m.gz # 1ijbA.t04.a2m with 2041 sequences, total weight= 2041 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.998286 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijbA/info/1ijbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ijbA/nostruct-align/1ijbA.t04.a2m.gz, have 182374 columns in 757 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqvA/nostruct-align/1lqvA.t04.a2m.gz # 1lqvA.t04.a2m with 3003 sequences, total weight= 12.188 avg weight= 0.00405862 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqvA/info/1lqvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lqvA/nostruct-align/1lqvA.t04.a2m.gz, have 182546 columns in 758 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dowA/nostruct-align/1dowA.t04.a2m.gz # 1dowA.t04.a2m with 72 sequences, total weight= 10.8479 avg weight= 0.150665 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dowA/info/1dowA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dowA/nostruct-align/1dowA.t04.a2m.gz, have 182751 columns in 759 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t04.a2m.gz # 1cc8A.t04.a2m with 298 sequences, total weight= 64.9097 avg weight= 0.217818 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30216 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cc8A/info/1cc8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t04.a2m.gz, have 182823 columns in 760 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t04.a2m.gz # 1qf8A.t04.a2m with 91 sequences, total weight= 7.53108 avg weight= 0.0827591 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qf8A/info/1qf8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t04.a2m.gz, have 182990 columns in 761 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t04.a2m.gz # 1gsoA.t04.a2m with 2882 sequences, total weight= 2882 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05138 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gsoA/info/1gsoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t04.a2m.gz, have 183409 columns in 762 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0cA/nostruct-align/1d0cA.t04.a2m.gz # 1d0cA.t04.a2m with 169 sequences, total weight= 6.44344 avg weight= 0.0381269 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0cA/info/1d0cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d0cA/nostruct-align/1d0cA.t04.a2m.gz, have 183825 columns in 763 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gq6A/nostruct-align/1gq6A.t04.a2m.gz # 1gq6A.t04.a2m with 346 sequences, total weight= 346 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28431 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gq6A/info/1gq6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gq6A/nostruct-align/1gq6A.t04.a2m.gz, have 184120 columns in 764 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t04.a2m.gz # 1oaa.t04.a2m with 3027 sequences, total weight= 164.238 avg weight= 0.0542575 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33415 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oaa/info/1oaa.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t04.a2m.gz, have 184379 columns in 765 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rqpA/nostruct-align/1rqpA.t04.a2m.gz # 1rqpA.t04.a2m with 56 sequences, total weight= 19.5728 avg weight= 0.349515 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rqpA/info/1rqpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rqpA/nostruct-align/1rqpA.t04.a2m.gz, have 184670 columns in 766 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t04.a2m.gz # 4uagA.t04.a2m with 1278 sequences, total weight= 1278 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11169 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4uagA/info/4uagA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t04.a2m.gz, have 185099 columns in 767 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vpt/nostruct-align/1vpt.t04.a2m.gz # 1vpt.t04.a2m with 54 sequences, total weight= 8.24121 avg weight= 0.152615 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vpt/info/1vpt.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vpt/nostruct-align/1vpt.t04.a2m.gz, have 185390 columns in 768 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p4cA/nostruct-align/1p4cA.t04.a2m.gz # 1p4cA.t04.a2m with 2266 sequences, total weight= 2266 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.986092 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p4cA/info/1p4cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p4cA/nostruct-align/1p4cA.t04.a2m.gz, have 185743 columns in 769 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l9xA/nostruct-align/1l9xA.t04.a2m.gz # 1l9xA.t04.a2m with 2461 sequences, total weight= 2461 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01767 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l9xA/info/1l9xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l9xA/nostruct-align/1l9xA.t04.a2m.gz, have 186031 columns in 770 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n71A/nostruct-align/1n71A.t04.a2m.gz # 1n71A.t04.a2m with 2633 sequences, total weight= 2633 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.852148 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n71A/info/1n71A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n71A/nostruct-align/1n71A.t04.a2m.gz, have 186211 columns in 771 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t04.a2m.gz # 1a7s.t04.a2m with 3065 sequences, total weight= 522.612 avg weight= 0.17051 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.34261 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a7s/info/1a7s.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t04.a2m.gz, have 186432 columns in 772 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5fA/nostruct-align/1p5fA.t04.a2m.gz # 1p5fA.t04.a2m with 906 sequences, total weight= 906 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1298 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5fA/info/1p5fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p5fA/nostruct-align/1p5fA.t04.a2m.gz, have 186618 columns in 773 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i58A/nostruct-align/1i58A.t04.a2m.gz # 1i58A.t04.a2m with 3016 sequences, total weight= 264.226 avg weight= 0.087608 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33162 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i58A/info/1i58A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i58A/nostruct-align/1i58A.t04.a2m.gz, have 186807 columns in 774 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uujA/nostruct-align/1uujA.t04.a2m.gz # 1uujA.t04.a2m with 40 sequences, total weight= 7.55132 avg weight= 0.188783 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uujA/info/1uujA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uujA/nostruct-align/1uujA.t04.a2m.gz, have 186883 columns in 775 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e0tA/nostruct-align/1e0tA.t04.a2m.gz # 1e0tA.t04.a2m with 520 sequences, total weight= 28.0552 avg weight= 0.0539523 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e0tA/info/1e0tA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e0tA/nostruct-align/1e0tA.t04.a2m.gz, have 187329 columns in 776 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p0hA/nostruct-align/1p0hA.t04.a2m.gz # 1p0hA.t04.a2m with 3033 sequences, total weight= 3033 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.913439 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p0hA/info/1p0hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p0hA/nostruct-align/1p0hA.t04.a2m.gz, have 187619 columns in 777 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1usmA/nostruct-align/1usmA.t04.a2m.gz # 1usmA.t04.a2m with 133 sequences, total weight= 18.8273 avg weight= 0.141558 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1usmA/info/1usmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1usmA/nostruct-align/1usmA.t04.a2m.gz, have 187696 columns in 778 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fr2B/nostruct-align/1fr2B.t04.a2m.gz # 1fr2B.t04.a2m with 32 sequences, total weight= 4.53393 avg weight= 0.141685 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fr2B/info/1fr2B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fr2B/nostruct-align/1fr2B.t04.a2m.gz, have 187827 columns in 779 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vdkA/nostruct-align/1vdkA.t04.a2m.gz # 1vdkA.t04.a2m with 925 sequences, total weight= 196.84 avg weight= 0.2128 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31167 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vdkA/info/1vdkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vdkA/nostruct-align/1vdkA.t04.a2m.gz, have 188285 columns in 780 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t04.a2m.gz # 2sli.t04.a2m with 505 sequences, total weight= 505 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.967622 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2sli/info/2sli.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t04.a2m.gz, have 188964 columns in 781 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t04.a2m.gz # 1dz3A.t04.a2m with 3190 sequences, total weight= 107.649 avg weight= 0.0337456 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33128 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dz3A/info/1dz3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t04.a2m.gz, have 189087 columns in 782 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o2dA/nostruct-align/1o2dA.t04.a2m.gz # 1o2dA.t04.a2m with 968 sequences, total weight= 968 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17335 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o2dA/info/1o2dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o2dA/nostruct-align/1o2dA.t04.a2m.gz, have 189446 columns in 783 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t04.a2m.gz # 1molA.t04.a2m with 14 sequences, total weight= 2.42696 avg weight= 0.173354 8 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1molA/info/1molA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t04.a2m.gz, have 189540 columns in 784 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t04.a2m.gz # 1qs1A.t04.a2m with 151 sequences, total weight= 151 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1749 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qs1A/info/1qs1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t04.a2m.gz, have 189942 columns in 785 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4gA/nostruct-align/1h4gA.t04.a2m.gz # 1h4gA.t04.a2m with 204 sequences, total weight= 12.0812 avg weight= 0.0592218 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4gA/info/1h4gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h4gA/nostruct-align/1h4gA.t04.a2m.gz, have 190148 columns in 786 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m9xC/nostruct-align/1m9xC.t04.a2m.gz # 1m9xC.t04.a2m with 3001 sequences, total weight= 2.92516 avg weight= 0.000974728 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m9xC/info/1m9xC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m9xC/nostruct-align/1m9xC.t04.a2m.gz, have 190294 columns in 787 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v8cA/nostruct-align/1v8cA.t04.a2m.gz # 1v8cA.t04.a2m with 226 sequences, total weight= 85.8344 avg weight= 0.379798 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v8cA/info/1v8cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v8cA/nostruct-align/1v8cA.t04.a2m.gz, have 190459 columns in 788 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5zB/nostruct-align/1p5zB.t04.a2m.gz # 1p5zB.t04.a2m with 2709 sequences, total weight= 2709 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.787124 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5zB/info/1p5zB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p5zB/nostruct-align/1p5zB.t04.a2m.gz, have 190688 columns in 789 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khxA/nostruct-align/1khxA.t04.a2m.gz # 1khxA.t04.a2m with 213 sequences, total weight= 22.7156 avg weight= 0.106646 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khxA/info/1khxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1khxA/nostruct-align/1khxA.t04.a2m.gz, have 190891 columns in 790 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1st9A/nostruct-align/1st9A.t04.a2m.gz # 1st9A.t04.a2m with 3243 sequences, total weight= 3243 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03971 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1st9A/info/1st9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1st9A/nostruct-align/1st9A.t04.a2m.gz, have 191028 columns in 791 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mk4A/nostruct-align/1mk4A.t04.a2m.gz # 1mk4A.t04.a2m with 3057 sequences, total weight= 3057 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.841369 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mk4A/info/1mk4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mk4A/nostruct-align/1mk4A.t04.a2m.gz, have 191185 columns in 792 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1eA/nostruct-align/1f1eA.t04.a2m.gz # 1f1eA.t04.a2m with 3 sequences, total weight= 1.85317 avg weight= 0.617722 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1eA/info/1f1eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f1eA/nostruct-align/1f1eA.t04.a2m.gz, have 191336 columns in 793 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nh8A/nostruct-align/1nh8A.t04.a2m.gz # 1nh8A.t04.a2m with 192 sequences, total weight= 32.1064 avg weight= 0.167221 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nh8A/info/1nh8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nh8A/nostruct-align/1nh8A.t04.a2m.gz, have 191612 columns in 794 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ikpA/nostruct-align/1ikpA.t04.a2m.gz # 1ikpA.t04.a2m with 3021 sequences, total weight= 18.5271 avg weight= 0.00613276 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ikpA/info/1ikpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ikpA/nostruct-align/1ikpA.t04.a2m.gz, have 192211 columns in 795 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1swxA/nostruct-align/1swxA.t04.a2m.gz # 1swxA.t04.a2m with 90 sequences, total weight= 42.5859 avg weight= 0.473176 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1swxA/info/1swxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1swxA/nostruct-align/1swxA.t04.a2m.gz, have 192409 columns in 796 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t04.a2m.gz # 2nlrA.t04.a2m with 75 sequences, total weight= 28.291 avg weight= 0.377214 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2n/2nlrA/info/2nlrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t04.a2m.gz, have 192631 columns in 797 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uebA/nostruct-align/1uebA.t04.a2m.gz # 1uebA.t04.a2m with 320 sequences, total weight= 27.39 avg weight= 0.0855938 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uebA/info/1uebA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uebA/nostruct-align/1uebA.t04.a2m.gz, have 192815 columns in 798 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t04.a2m.gz # 1mgtA.t04.a2m with 369 sequences, total weight= 207.998 avg weight= 0.563681 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30459 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mgtA/info/1mgtA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t04.a2m.gz, have 192984 columns in 799 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dytA/nostruct-align/1dytA.t04.a2m.gz # 1dytA.t04.a2m with 431 sequences, total weight= 27.0515 avg weight= 0.0627645 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dytA/info/1dytA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dytA/nostruct-align/1dytA.t04.a2m.gz, have 193117 columns in 800 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1me4A/nostruct-align/1me4A.t04.a2m.gz # 1me4A.t04.a2m with 1455 sequences, total weight= 238.209 avg weight= 0.163717 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32308 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1me4A/info/1me4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1me4A/nostruct-align/1me4A.t04.a2m.gz, have 193332 columns in 801 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6xA/nostruct-align/1g6xA.t04.a2m.gz # 1g6xA.t04.a2m with 894 sequences, total weight= 73.5555 avg weight= 0.0822768 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30837 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6xA/info/1g6xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g6xA/nostruct-align/1g6xA.t04.a2m.gz, have 193390 columns in 802 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iwlA/nostruct-align/1iwlA.t04.a2m.gz # 1iwlA.t04.a2m with 163 sequences, total weight= 163 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0973 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iwlA/info/1iwlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iwlA/nostruct-align/1iwlA.t04.a2m.gz, have 193567 columns in 803 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k2xA/nostruct-align/1k2xA.t04.a2m.gz # 1k2xA.t04.a2m with 136 sequences, total weight= 27.5586 avg weight= 0.202636 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k2xA/info/1k2xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k2xA/nostruct-align/1k2xA.t04.a2m.gz, have 193723 columns in 804 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jiwI/nostruct-align/1jiwI.t04.a2m.gz # 1jiwI.t04.a2m with 24 sequences, total weight= 8.74322 avg weight= 0.364301 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jiwI/info/1jiwI.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jiwI/nostruct-align/1jiwI.t04.a2m.gz, have 193828 columns in 805 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogiA/nostruct-align/1ogiA.t04.a2m.gz # 1ogiA.t04.a2m with 1816 sequences, total weight= 1816 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.990539 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogiA/info/1ogiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ogiA/nostruct-align/1ogiA.t04.a2m.gz, have 194123 columns in 806 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mf7A/nostruct-align/1mf7A.t04.a2m.gz # 1mf7A.t04.a2m with 2200 sequences, total weight= 2200 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.984766 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mf7A/info/1mf7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mf7A/nostruct-align/1mf7A.t04.a2m.gz, have 194317 columns in 807 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jp4A/nostruct-align/1jp4A.t04.a2m.gz # 1jp4A.t04.a2m with 809 sequences, total weight= 809 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14783 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jp4A/info/1jp4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jp4A/nostruct-align/1jp4A.t04.a2m.gz, have 194619 columns in 808 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sjyA/nostruct-align/1sjyA.t04.a2m.gz # 1sjyA.t04.a2m with 2178 sequences, total weight= 2178 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.816795 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sjyA/info/1sjyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sjyA/nostruct-align/1sjyA.t04.a2m.gz, have 194773 columns in 809 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1evyA/nostruct-align/1evyA.t04.a2m.gz # 1evyA.t04.a2m with 2975 sequences, total weight= 2975 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.906195 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1evyA/info/1evyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1evyA/nostruct-align/1evyA.t04.a2m.gz, have 195119 columns in 810 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1snrA/nostruct-align/1snrA.t04.a2m.gz # 1snrA.t04.a2m with 1340 sequences, total weight= 1340 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10082 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1snrA/info/1snrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1snrA/nostruct-align/1snrA.t04.a2m.gz, have 195455 columns in 811 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkgA/nostruct-align/1nkgA.t04.a2m.gz # 1nkgA.t04.a2m with 37 sequences, total weight= 16.5696 avg weight= 0.447827 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkgA/info/1nkgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nkgA/nostruct-align/1nkgA.t04.a2m.gz, have 195963 columns in 812 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g12A/nostruct-align/1g12A.t04.a2m.gz # 1g12A.t04.a2m with 50 sequences, total weight= 41.701 avg weight= 0.834019 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g12A/info/1g12A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g12A/nostruct-align/1g12A.t04.a2m.gz, have 196130 columns in 813 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3yA/nostruct-align/1k3yA.t04.a2m.gz # 1k3yA.t04.a2m with 2510 sequences, total weight= 2510 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00104 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3yA/info/1k3yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k3yA/nostruct-align/1k3yA.t04.a2m.gz, have 196351 columns in 814 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ng6A/nostruct-align/1ng6A.t04.a2m.gz # 1ng6A.t04.a2m with 110 sequences, total weight= 17.5255 avg weight= 0.159323 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ng6A/info/1ng6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1ng6A/nostruct-align/1ng6A.t04.a2m.gz, have 196499 columns in 815 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t04.a2m.gz # 1ftrA.t04.a2m with 32 sequences, total weight= 4.9714 avg weight= 0.155356 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1ftrA/info/1ftrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t04.a2m.gz, have 196795 columns in 816 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t04.a2m.gz # 1co6A.t04.a2m with 367 sequences, total weight= 21.0453 avg weight= 0.0573443 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1co6A/info/1co6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t04.a2m.gz, have 196902 columns in 817 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nc5A/nostruct-align/1nc5A.t04.a2m.gz # 1nc5A.t04.a2m with 124 sequences, total weight= 124 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01909 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nc5A/info/1nc5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nc5A/nostruct-align/1nc5A.t04.a2m.gz, have 197265 columns in 818 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t04.a2m.gz # 3nul.t04.a2m with 182 sequences, total weight= 27.9856 avg weight= 0.153767 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3n/3nul/info/3nul.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t04.a2m.gz, have 197395 columns in 819 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t04.a2m.gz # 1qj4A.t04.a2m with 3002 sequences, total weight= 3002 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.79115 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qj4A/info/1qj4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t04.a2m.gz, have 197651 columns in 820 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8mA/nostruct-align/1g8mA.t04.a2m.gz # 1g8mA.t04.a2m with 249 sequences, total weight= 14.0017 avg weight= 0.0562318 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8mA/info/1g8mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g8mA/nostruct-align/1g8mA.t04.a2m.gz, have 198241 columns in 821 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n8vA/nostruct-align/1n8vA.t04.a2m.gz # 1n8vA.t04.a2m with 82 sequences, total weight= 11.3655 avg weight= 0.138603 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n8vA/info/1n8vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n8vA/nostruct-align/1n8vA.t04.a2m.gz, have 198342 columns in 822 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o8bA/nostruct-align/1o8bA.t04.a2m.gz # 1o8bA.t04.a2m with 199 sequences, total weight= 15.5956 avg weight= 0.0783698 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o8bA/info/1o8bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o8bA/nostruct-align/1o8bA.t04.a2m.gz, have 198510 columns in 823 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1uA/nostruct-align/1f1uA.t04.a2m.gz # 1f1uA.t04.a2m with 1813 sequences, total weight= 1813 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.983881 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1uA/info/1f1uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f1uA/nostruct-align/1f1uA.t04.a2m.gz, have 198832 columns in 824 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqjA/nostruct-align/1tqjA.t04.a2m.gz # 1tqjA.t04.a2m with 2374 sequences, total weight= 2374 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.977182 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqjA/info/1tqjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tqjA/nostruct-align/1tqjA.t04.a2m.gz, have 199049 columns in 825 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5cA/nostruct-align/1k5cA.t04.a2m.gz # 1k5cA.t04.a2m with 488 sequences, total weight= 301.31 avg weight= 0.617438 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30634 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5cA/info/1k5cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k5cA/nostruct-align/1k5cA.t04.a2m.gz, have 199382 columns in 826 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t04.a2m.gz # 1oneA.t04.a2m with 817 sequences, total weight= 87.3685 avg weight= 0.106938 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30042 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oneA/info/1oneA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t04.a2m.gz, have 199818 columns in 827 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t04.a2m.gz # 1dj0A.t04.a2m with 305 sequences, total weight= 80.3295 avg weight= 0.263376 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3036 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dj0A/info/1dj0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t04.a2m.gz, have 200082 columns in 828 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q25A/nostruct-align/1q25A.t04.a2m.gz # 1q25A.t04.a2m with 229 sequences, total weight= 131.598 avg weight= 0.574664 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30074 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q25A/info/1q25A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q25A/nostruct-align/1q25A.t04.a2m.gz, have 200510 columns in 829 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gskA/nostruct-align/1gskA.t04.a2m.gz # 1gskA.t04.a2m with 1115 sequences, total weight= 1115 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11149 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gskA/info/1gskA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gskA/nostruct-align/1gskA.t04.a2m.gz, have 201012 columns in 830 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j3aA/nostruct-align/1j3aA.t04.a2m.gz # 1j3aA.t04.a2m with 308 sequences, total weight= 29.6346 avg weight= 0.0962164 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j3aA/info/1j3aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j3aA/nostruct-align/1j3aA.t04.a2m.gz, have 201141 columns in 831 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jy1A/nostruct-align/1jy1A.t04.a2m.gz # 1jy1A.t04.a2m with 44 sequences, total weight= 26.5824 avg weight= 0.604146 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jy1A/info/1jy1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jy1A/nostruct-align/1jy1A.t04.a2m.gz, have 201580 columns in 832 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i27A/nostruct-align/1i27A.t04.a2m.gz # 1i27A.t04.a2m with 16 sequences, total weight= 3.51581 avg weight= 0.219738 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i27A/info/1i27A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i27A/nostruct-align/1i27A.t04.a2m.gz, have 201653 columns in 833 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t04.a2m.gz # 1tgsI.t04.a2m with 478 sequences, total weight= 67.4768 avg weight= 0.141165 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30976 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tgsI/info/1tgsI.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t04.a2m.gz, have 201709 columns in 834 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t04.a2m.gz # 1dgwA.t04.a2m with 1008 sequences, total weight= 1008 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24099 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dgwA/info/1dgwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t04.a2m.gz, have 201887 columns in 835 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w50A/nostruct-align/1w50A.t04.a2m.gz # 1w50A.t04.a2m with 1139 sequences, total weight= 1139 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20406 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w50A/info/1w50A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w50A/nostruct-align/1w50A.t04.a2m.gz, have 202264 columns in 836 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gx5A/nostruct-align/1gx5A.t04.a2m.gz # 1gx5A.t04.a2m with 3000 sequences, total weight= 269.956 avg weight= 0.0899854 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32549 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gx5A/info/1gx5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gx5A/nostruct-align/1gx5A.t04.a2m.gz, have 202794 columns in 837 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hztA/nostruct-align/1hztA.t04.a2m.gz # 1hztA.t04.a2m with 2074 sequences, total weight= 2074 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.862595 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hztA/info/1hztA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hztA/nostruct-align/1hztA.t04.a2m.gz, have 202947 columns in 838 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1owlA/nostruct-align/1owlA.t04.a2m.gz # 1owlA.t04.a2m with 369 sequences, total weight= 369 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29622 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1owlA/info/1owlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1owlA/nostruct-align/1owlA.t04.a2m.gz, have 203420 columns in 839 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fpoA/nostruct-align/1fpoA.t04.a2m.gz # 1fpoA.t04.a2m with 1759 sequences, total weight= 1759 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.997247 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fpoA/info/1fpoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fpoA/nostruct-align/1fpoA.t04.a2m.gz, have 203591 columns in 840 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rrmA/nostruct-align/1rrmA.t04.a2m.gz # 1rrmA.t04.a2m with 948 sequences, total weight= 948 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15384 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rrmA/info/1rrmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rrmA/nostruct-align/1rrmA.t04.a2m.gz, have 203976 columns in 841 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t04.a2m.gz # 1qsaA.t04.a2m with 609 sequences, total weight= 609 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.990143 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qsaA/info/1qsaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t04.a2m.gz, have 204594 columns in 842 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ohlA/nostruct-align/1ohlA.t04.a2m.gz # 1ohlA.t04.a2m with 265 sequences, total weight= 10.3615 avg weight= 0.0390999 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ohlA/info/1ohlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ohlA/nostruct-align/1ohlA.t04.a2m.gz, have 204934 columns in 843 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oygA/nostruct-align/1oygA.t04.a2m.gz # 1oygA.t04.a2m with 58 sequences, total weight= 19.818 avg weight= 0.34169 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oygA/info/1oygA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oygA/nostruct-align/1oygA.t04.a2m.gz, have 205374 columns in 844 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khcA/nostruct-align/1khcA.t04.a2m.gz # 1khcA.t04.a2m with 265 sequences, total weight= 265 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16048 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khcA/info/1khcA.stride-mixed.near-backbone-11 WARNING: skipping f, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1k/1khcA/nostruct-align/1khcA.t04.a2m.gz, have 205509 columns in 845 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nlqA/nostruct-align/1nlqA.t04.a2m.gz # 1nlqA.t04.a2m with 58 sequences, total weight= 8.41129 avg weight= 0.145022 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nlqA/info/1nlqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nlqA/nostruct-align/1nlqA.t04.a2m.gz, have 205614 columns in 846 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t04.a2m.gz # 1b2pA.t04.a2m with 178 sequences, total weight= 36.166 avg weight= 0.20318 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b2pA/info/1b2pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t04.a2m.gz, have 205733 columns in 847 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugpA/nostruct-align/1ugpA.t04.a2m.gz # 1ugpA.t04.a2m with 50 sequences, total weight= 7.28534 avg weight= 0.145707 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugpA/info/1ugpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ugpA/nostruct-align/1ugpA.t04.a2m.gz, have 205936 columns in 848 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o8xA/nostruct-align/1o8xA.t04.a2m.gz # 1o8xA.t04.a2m with 2651 sequences, total weight= 2651 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01804 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o8xA/info/1o8xA.stride-mixed.near-backbone-11 WARNING: skipping a, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1o/1o8xA/nostruct-align/1o8xA.t04.a2m.gz, have 206079 columns in 849 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t04.a2m.gz # 1nulA.t04.a2m with 680 sequences, total weight= 680 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17084 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nulA/info/1nulA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t04.a2m.gz, have 206221 columns in 850 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lugA/nostruct-align/1lugA.t04.a2m.gz # 1lugA.t04.a2m with 436 sequences, total weight= 68.8727 avg weight= 0.157965 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30158 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lugA/info/1lugA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lugA/nostruct-align/1lugA.t04.a2m.gz, have 206480 columns in 851 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t04.a2m.gz # 1tca.t04.a2m with 3012 sequences, total weight= 3012 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.917343 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tca/info/1tca.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t04.a2m.gz, have 206797 columns in 852 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t04.a2m.gz # 1behA.t04.a2m with 311 sequences, total weight= 311 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27481 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1behA/info/1behA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t04.a2m.gz, have 206981 columns in 853 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oaiA/nostruct-align/1oaiA.t04.a2m.gz # 1oaiA.t04.a2m with 31 sequences, total weight= 4.20139 avg weight= 0.135529 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oaiA/info/1oaiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oaiA/nostruct-align/1oaiA.t04.a2m.gz, have 207040 columns in 854 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sgwA/nostruct-align/1sgwA.t04.a2m.gz # 1sgwA.t04.a2m with 3047 sequences, total weight= 20.8242 avg weight= 0.00683432 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sgwA/info/1sgwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sgwA/nostruct-align/1sgwA.t04.a2m.gz, have 207240 columns in 855 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkiA/nostruct-align/1nkiA.t04.a2m.gz # 1nkiA.t04.a2m with 2251 sequences, total weight= 2251 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.841646 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkiA/info/1nkiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nkiA/nostruct-align/1nkiA.t04.a2m.gz, have 207374 columns in 856 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rv9A/nostruct-align/1rv9A.t04.a2m.gz # 1rv9A.t04.a2m with 181 sequences, total weight= 44.1337 avg weight= 0.243833 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rv9A/info/1rv9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rv9A/nostruct-align/1rv9A.t04.a2m.gz, have 207616 columns in 857 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v58A/nostruct-align/1v58A.t04.a2m.gz # 1v58A.t04.a2m with 724 sequences, total weight= 724 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.929067 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v58A/info/1v58A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v58A/nostruct-align/1v58A.t04.a2m.gz, have 207845 columns in 858 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kllA/nostruct-align/1kllA.t04.a2m.gz # 1kllA.t04.a2m with 2127 sequences, total weight= 2127 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.825641 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kllA/info/1kllA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kllA/nostruct-align/1kllA.t04.a2m.gz, have 207973 columns in 859 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u4gA/nostruct-align/1u4gA.t04.a2m.gz # 1u4gA.t04.a2m with 254 sequences, total weight= 94.4319 avg weight= 0.371779 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30138 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u4gA/info/1u4gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u4gA/nostruct-align/1u4gA.t04.a2m.gz, have 208271 columns in 860 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1roaA/nostruct-align/1roaA.t04.a2m.gz # 1roaA.t04.a2m with 427 sequences, total weight= 427 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24148 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1roaA/info/1roaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1roaA/nostruct-align/1roaA.t04.a2m.gz, have 208382 columns in 861 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t04.a2m.gz # 1ctf.t04.a2m with 271 sequences, total weight= 7.53823 avg weight= 0.0278164 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ctf/info/1ctf.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t04.a2m.gz, have 208450 columns in 862 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t04.a2m.gz # 1gai.t04.a2m with 142 sequences, total weight= 115.719 avg weight= 0.814923 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gai/info/1gai.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t04.a2m.gz, have 208922 columns in 863 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jsdB/nostruct-align/1jsdB.t04.a2m.gz # 1jsdB.t04.a2m with 954 sequences, total weight= 4.32344 avg weight= 0.00453191 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jsdB/info/1jsdB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jsdB/nostruct-align/1jsdB.t04.a2m.gz, have 209082 columns in 864 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t04.a2m.gz # 2pth.t04.a2m with 234 sequences, total weight= 27.5608 avg weight= 0.117781 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2pth/info/2pth.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t04.a2m.gz, have 209275 columns in 865 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e9gA/nostruct-align/1e9gA.t04.a2m.gz # 1e9gA.t04.a2m with 339 sequences, total weight= 43.5052 avg weight= 0.128334 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e9gA/info/1e9gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e9gA/nostruct-align/1e9gA.t04.a2m.gz, have 209559 columns in 866 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t04.a2m.gz # 1lucA.t04.a2m with 840 sequences, total weight= 840 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12721 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lucA/info/1lucA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t04.a2m.gz, have 209885 columns in 867 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sg6A/nostruct-align/1sg6A.t04.a2m.gz # 1sg6A.t04.a2m with 920 sequences, total weight= 920 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18896 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sg6A/info/1sg6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sg6A/nostruct-align/1sg6A.t04.a2m.gz, have 210262 columns in 868 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5aA/nostruct-align/1s5aA.t04.a2m.gz # 1s5aA.t04.a2m with 421 sequences, total weight= 421 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.903495 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5aA/info/1s5aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s5aA/nostruct-align/1s5aA.t04.a2m.gz, have 210401 columns in 869 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h1nA/nostruct-align/1h1nA.t04.a2m.gz # 1h1nA.t04.a2m with 1957 sequences, total weight= 1957 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.862409 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h1nA/info/1h1nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h1nA/nostruct-align/1h1nA.t04.a2m.gz, have 210706 columns in 870 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gpiA/nostruct-align/1gpiA.t04.a2m.gz # 1gpiA.t04.a2m with 127 sequences, total weight= 7.27446 avg weight= 0.0572792 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gpiA/info/1gpiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gpiA/nostruct-align/1gpiA.t04.a2m.gz, have 211137 columns in 871 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t04.a2m.gz # 1df4A.t04.a2m with 2893 sequences, total weight= 4.74946 avg weight= 0.00164171 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1df4A/info/1df4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t04.a2m.gz, have 211194 columns in 872 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t04.a2m.gz # 1hxn.t04.a2m with 391 sequences, total weight= 178.703 avg weight= 0.45704 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30476 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxn/info/1hxn.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t04.a2m.gz, have 211404 columns in 873 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f8mA/nostruct-align/1f8mA.t04.a2m.gz # 1f8mA.t04.a2m with 364 sequences, total weight= 68.9932 avg weight= 0.189542 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f8mA/info/1f8mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f8mA/nostruct-align/1f8mA.t04.a2m.gz, have 211831 columns in 874 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1earA/nostruct-align/1earA.t04.a2m.gz # 1earA.t04.a2m with 114 sequences, total weight= 44.3242 avg weight= 0.388809 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1earA/info/1earA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1earA/nostruct-align/1earA.t04.a2m.gz, have 211973 columns in 875 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4rA/nostruct-align/1h4rA.t04.a2m.gz # 1h4rA.t04.a2m with 781 sequences, total weight= 781 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10752 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4rA/info/1h4rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h4rA/nostruct-align/1h4rA.t04.a2m.gz, have 212267 columns in 876 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9wA/nostruct-align/1r9wA.t04.a2m.gz # 1r9wA.t04.a2m with 148 sequences, total weight= 11.3721 avg weight= 0.0768385 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9wA/info/1r9wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r9wA/nostruct-align/1r9wA.t04.a2m.gz, have 212405 columns in 877 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t04.a2m.gz # 1qo7A.t04.a2m with 3003 sequences, total weight= 3003 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.86712 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qo7A/info/1qo7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t04.a2m.gz, have 212790 columns in 878 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j30A/nostruct-align/1j30A.t04.a2m.gz # 1j30A.t04.a2m with 149 sequences, total weight= 147.855 avg weight= 0.992316 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j30A/info/1j30A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j30A/nostruct-align/1j30A.t04.a2m.gz, have 212931 columns in 879 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nzjA/nostruct-align/1nzjA.t04.a2m.gz # 1nzjA.t04.a2m with 1972 sequences, total weight= 1972 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02447 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nzjA/info/1nzjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nzjA/nostruct-align/1nzjA.t04.a2m.gz, have 213204 columns in 880 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vimA/nostruct-align/1vimA.t04.a2m.gz # 1vimA.t04.a2m with 1490 sequences, total weight= 1490 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00869 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vimA/info/1vimA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vimA/nostruct-align/1vimA.t04.a2m.gz, have 213396 columns in 881 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oa8A/nostruct-align/1oa8A.t04.a2m.gz # 1oa8A.t04.a2m with 25 sequences, total weight= 6.06903 avg weight= 0.242761 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oa8A/info/1oa8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oa8A/nostruct-align/1oa8A.t04.a2m.gz, have 213524 columns in 882 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m65A/nostruct-align/1m65A.t04.a2m.gz # 1m65A.t04.a2m with 748 sequences, total weight= 748 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.924486 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m65A/info/1m65A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m65A/nostruct-align/1m65A.t04.a2m.gz, have 213758 columns in 883 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e2kA/nostruct-align/1e2kA.t04.a2m.gz # 1e2kA.t04.a2m with 449 sequences, total weight= 449 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25527 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e2kA/info/1e2kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e2kA/nostruct-align/1e2kA.t04.a2m.gz, have 214066 columns in 884 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eyeA/nostruct-align/1eyeA.t04.a2m.gz # 1eyeA.t04.a2m with 520 sequences, total weight= 98.6992 avg weight= 0.189806 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30489 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eyeA/info/1eyeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eyeA/nostruct-align/1eyeA.t04.a2m.gz, have 214322 columns in 885 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t04.a2m.gz # 1cs6A.t04.a2m with 4915 sequences, total weight= 4915 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.883497 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cs6A/info/1cs6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t04.a2m.gz, have 214704 columns in 886 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u7gA/nostruct-align/1u7gA.t04.a2m.gz # 1u7gA.t04.a2m with 630 sequences, total weight= 60.3655 avg weight= 0.0958182 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30068 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u7gA/info/1u7gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u7gA/nostruct-align/1u7gA.t04.a2m.gz, have 215087 columns in 887 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kaeA/nostruct-align/1kaeA.t04.a2m.gz # 1kaeA.t04.a2m with 237 sequences, total weight= 16.0909 avg weight= 0.0678942 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kaeA/info/1kaeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kaeA/nostruct-align/1kaeA.t04.a2m.gz, have 215521 columns in 888 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t04.a2m.gz # 1qftA.t04.a2m with 17 sequences, total weight= 16.1006 avg weight= 0.947095 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qftA/info/1qftA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t04.a2m.gz, have 215696 columns in 889 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8aA/nostruct-align/1g8aA.t04.a2m.gz # 1g8aA.t04.a2m with 3032 sequences, total weight= 3032 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.78406 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8aA/info/1g8aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g8aA/nostruct-align/1g8aA.t04.a2m.gz, have 215923 columns in 890 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dtdB/nostruct-align/1dtdB.t04.a2m.gz # 1dtdB.t04.a2m with 4 sequences, total weight= 1.59871 avg weight= 0.399678 6 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dtdB/info/1dtdB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dtdB/nostruct-align/1dtdB.t04.a2m.gz, have 215984 columns in 891 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1inlA/nostruct-align/1inlA.t04.a2m.gz # 1inlA.t04.a2m with 3055 sequences, total weight= 3055 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.802491 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1inlA/info/1inlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1inlA/nostruct-align/1inlA.t04.a2m.gz, have 216269 columns in 892 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q5zA/nostruct-align/1q5zA.t04.a2m.gz # 1q5zA.t04.a2m with 7 sequences, total weight= 1.86999 avg weight= 0.267142 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q5zA/info/1q5zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q5zA/nostruct-align/1q5zA.t04.a2m.gz, have 216414 columns in 893 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t04.a2m.gz # 1cxqA.t04.a2m with 3006 sequences, total weight= 874.996 avg weight= 0.291083 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3302 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cxqA/info/1cxqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t04.a2m.gz, have 216557 columns in 894 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1itxA/nostruct-align/1itxA.t04.a2m.gz # 1itxA.t04.a2m with 1163 sequences, total weight= 1163 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12501 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1itxA/info/1itxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1itxA/nostruct-align/1itxA.t04.a2m.gz, have 216976 columns in 895 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o97D/nostruct-align/1o97D.t04.a2m.gz # 1o97D.t04.a2m with 481 sequences, total weight= 48.3783 avg weight= 0.100579 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o97D/info/1o97D.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o97D/nostruct-align/1o97D.t04.a2m.gz, have 217291 columns in 896 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t04.a2m.gz # 4eugA.t04.a2m with 280 sequences, total weight= 19.4386 avg weight= 0.0694234 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4e/4eugA/info/4eugA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t04.a2m.gz, have 217516 columns in 897 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pfbA/nostruct-align/1pfbA.t04.a2m.gz # 1pfbA.t04.a2m with 237 sequences, total weight= 20.1883 avg weight= 0.0851825 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pfbA/info/1pfbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pfbA/nostruct-align/1pfbA.t04.a2m.gz, have 217571 columns in 898 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rjdA/nostruct-align/1rjdA.t04.a2m.gz # 1rjdA.t04.a2m with 218 sequences, total weight= 218 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04045 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rjdA/info/1rjdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rjdA/nostruct-align/1rjdA.t04.a2m.gz, have 217899 columns in 899 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhwA/nostruct-align/1vhwA.t04.a2m.gz # 1vhwA.t04.a2m with 762 sequences, total weight= 762 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0186 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhwA/info/1vhwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhwA/nostruct-align/1vhwA.t04.a2m.gz, have 218136 columns in 900 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwbA/nostruct-align/1pwbA.t04.a2m.gz # 1pwbA.t04.a2m with 2243 sequences, total weight= 2243 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.933743 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwbA/info/1pwbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pwbA/nostruct-align/1pwbA.t04.a2m.gz, have 218287 columns in 901 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1irdB/nostruct-align/1irdB.t04.a2m.gz # 1irdB.t04.a2m with 1856 sequences, total weight= 241.27 avg weight= 0.129995 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33264 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1irdB/info/1irdB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1irdB/nostruct-align/1irdB.t04.a2m.gz, have 218433 columns in 902 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rylA/nostruct-align/1rylA.t04.a2m.gz # 1rylA.t04.a2m with 16 sequences, total weight= 14.1539 avg weight= 0.88462 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rylA/info/1rylA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rylA/nostruct-align/1rylA.t04.a2m.gz, have 218590 columns in 903 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sx5A/nostruct-align/1sx5A.t04.a2m.gz # 1sx5A.t04.a2m with 9 sequences, total weight= 2.69511 avg weight= 0.299457 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sx5A/info/1sx5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sx5A/nostruct-align/1sx5A.t04.a2m.gz, have 218834 columns in 904 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ut1A/nostruct-align/1ut1A.t04.a2m.gz # 1ut1A.t04.a2m with 11 sequences, total weight= 5.25214 avg weight= 0.477467 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ut1A/info/1ut1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ut1A/nostruct-align/1ut1A.t04.a2m.gz, have 218974 columns in 905 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mr7A/nostruct-align/1mr7A.t04.a2m.gz # 1mr7A.t04.a2m with 1765 sequences, total weight= 1765 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00329 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mr7A/info/1mr7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mr7A/nostruct-align/1mr7A.t04.a2m.gz, have 219177 columns in 906 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1twdA/nostruct-align/1twdA.t04.a2m.gz # 1twdA.t04.a2m with 92 sequences, total weight= 19.9602 avg weight= 0.216959 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1twdA/info/1twdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1twdA/nostruct-align/1twdA.t04.a2m.gz, have 219411 columns in 907 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t04.a2m.gz # 2igd.t04.a2m with 50 sequences, total weight= 3.28285 avg weight= 0.065657 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2i/2igd/info/2igd.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t04.a2m.gz, have 219472 columns in 908 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lc0A/nostruct-align/1lc0A.t04.a2m.gz # 1lc0A.t04.a2m with 2651 sequences, total weight= 2651 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.818955 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lc0A/info/1lc0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lc0A/nostruct-align/1lc0A.t04.a2m.gz, have 219762 columns in 909 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ka1A/nostruct-align/1ka1A.t04.a2m.gz # 1ka1A.t04.a2m with 755 sequences, total weight= 755 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17418 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ka1A/info/1ka1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1ka1A/nostruct-align/1ka1A.t04.a2m.gz, have 220116 columns in 910 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ejdA/nostruct-align/1ejdA.t04.a2m.gz # 1ejdA.t04.a2m with 595 sequences, total weight= 79.7024 avg weight= 0.133954 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30254 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ejdA/info/1ejdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ejdA/nostruct-align/1ejdA.t04.a2m.gz, have 220535 columns in 911 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r89A/nostruct-align/1r89A.t04.a2m.gz # 1r89A.t04.a2m with 391 sequences, total weight= 391 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03732 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r89A/info/1r89A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r89A/nostruct-align/1r89A.t04.a2m.gz, have 220972 columns in 912 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pq1A/nostruct-align/1pq1A.t04.a2m.gz # 1pq1A.t04.a2m with 224 sequences, total weight= 126.574 avg weight= 0.565065 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30254 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pq1A/info/1pq1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pq1A/nostruct-align/1pq1A.t04.a2m.gz, have 221119 columns in 913 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ursA/nostruct-align/1ursA.t04.a2m.gz # 1ursA.t04.a2m with 1788 sequences, total weight= 1788 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.857515 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ursA/info/1ursA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ursA/nostruct-align/1ursA.t04.a2m.gz, have 221485 columns in 914 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q35A/nostruct-align/1q35A.t04.a2m.gz # 1q35A.t04.a2m with 1836 sequences, total weight= 1836 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.854586 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q35A/info/1q35A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q35A/nostruct-align/1q35A.t04.a2m.gz, have 221802 columns in 915 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t04.a2m.gz # 1psrA.t04.a2m with 205 sequences, total weight= 31.4857 avg weight= 0.153589 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1psrA/info/1psrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t04.a2m.gz, have 221902 columns in 916 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1md6A/nostruct-align/1md6A.t04.a2m.gz # 1md6A.t04.a2m with 195 sequences, total weight= 29.2744 avg weight= 0.150125 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1md6A/info/1md6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1md6A/nostruct-align/1md6A.t04.a2m.gz, have 222056 columns in 917 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1po5A/nostruct-align/1po5A.t04.a2m.gz # 1po5A.t04.a2m with 3021 sequences, total weight= 3021 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15334 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1po5A/info/1po5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1po5A/nostruct-align/1po5A.t04.a2m.gz, have 222521 columns in 918 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kzfA/nostruct-align/1kzfA.t04.a2m.gz # 1kzfA.t04.a2m with 179 sequences, total weight= 179 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21069 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kzfA/info/1kzfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kzfA/nostruct-align/1kzfA.t04.a2m.gz, have 222719 columns in 919 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t04.a2m.gz # 1vhh.t04.a2m with 108 sequences, total weight= 4.22577 avg weight= 0.0391275 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhh/info/1vhh.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t04.a2m.gz, have 222876 columns in 920 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2bA/nostruct-align/1g2bA.t04.a2m.gz # 1g2bA.t04.a2m with 174 sequences, total weight= 18.363 avg weight= 0.105535 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2bA/info/1g2bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g2bA/nostruct-align/1g2bA.t04.a2m.gz, have 222938 columns in 921 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwgA/nostruct-align/1pwgA.t04.a2m.gz # 1pwgA.t04.a2m with 887 sequences, total weight= 887 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03626 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwgA/info/1pwgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pwgA/nostruct-align/1pwgA.t04.a2m.gz, have 223283 columns in 922 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jx6A/nostruct-align/1jx6A.t04.a2m.gz # 1jx6A.t04.a2m with 2012 sequences, total weight= 2012 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.949199 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jx6A/info/1jx6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jx6A/nostruct-align/1jx6A.t04.a2m.gz, have 223621 columns in 923 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqgA/nostruct-align/1tqgA.t04.a2m.gz # 1tqgA.t04.a2m with 344 sequences, total weight= 146.033 avg weight= 0.424513 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30681 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqgA/info/1tqgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tqgA/nostruct-align/1tqgA.t04.a2m.gz, have 223726 columns in 924 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rvkA/nostruct-align/1rvkA.t04.a2m.gz # 1rvkA.t04.a2m with 1153 sequences, total weight= 1153 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22035 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rvkA/info/1rvkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rvkA/nostruct-align/1rvkA.t04.a2m.gz, have 224107 columns in 925 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f5vA/nostruct-align/1f5vA.t04.a2m.gz # 1f5vA.t04.a2m with 765 sequences, total weight= 765 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1552 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f5vA/info/1f5vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f5vA/nostruct-align/1f5vA.t04.a2m.gz, have 224347 columns in 926 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eb6A/nostruct-align/1eb6A.t04.a2m.gz # 1eb6A.t04.a2m with 50 sequences, total weight= 33.9797 avg weight= 0.679594 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eb6A/info/1eb6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eb6A/nostruct-align/1eb6A.t04.a2m.gz, have 224524 columns in 927 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fcqA/nostruct-align/1fcqA.t04.a2m.gz # 1fcqA.t04.a2m with 92 sequences, total weight= 11.4012 avg weight= 0.123927 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fcqA/info/1fcqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fcqA/nostruct-align/1fcqA.t04.a2m.gz, have 224838 columns in 928 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t04.a2m.gz # 1ifc.t04.a2m with 321 sequences, total weight= 33.1836 avg weight= 0.103376 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ifc/info/1ifc.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t04.a2m.gz, have 224969 columns in 929 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lxjA/nostruct-align/1lxjA.t04.a2m.gz # 1lxjA.t04.a2m with 69 sequences, total weight= 26.8983 avg weight= 0.38983 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lxjA/info/1lxjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lxjA/nostruct-align/1lxjA.t04.a2m.gz, have 225073 columns in 930 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54C/nostruct-align/1v54C.t04.a2m.gz # 1v54C.t04.a2m with 1717 sequences, total weight= 59.452 avg weight= 0.0346255 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30057 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54C/info/1v54C.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v54C/nostruct-align/1v54C.t04.a2m.gz, have 225332 columns in 931 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbyB/nostruct-align/1pbyB.t04.a2m.gz # 1pbyB.t04.a2m with 3432 sequences, total weight= 3432 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.880386 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbyB/info/1pbyB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pbyB/nostruct-align/1pbyB.t04.a2m.gz, have 225669 columns in 932 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t04.a2m.gz # 1b3aA.t04.a2m with 443 sequences, total weight= 53.9926 avg weight= 0.12188 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30219 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b3aA/info/1b3aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t04.a2m.gz, have 225736 columns in 933 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl2A/nostruct-align/1vl2A.t04.a2m.gz # 1vl2A.t04.a2m with 1567 sequences, total weight= 1567 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13801 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl2A/info/1vl2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vl2A/nostruct-align/1vl2A.t04.a2m.gz, have 226134 columns in 934 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pb7A/nostruct-align/1pb7A.t04.a2m.gz # 1pb7A.t04.a2m with 2001 sequences, total weight= 2001 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.97266 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pb7A/info/1pb7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pb7A/nostruct-align/1pb7A.t04.a2m.gz, have 226415 columns in 935 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqzA/nostruct-align/1dqzA.t04.a2m.gz # 1dqzA.t04.a2m with 3013 sequences, total weight= 3013 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.814114 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqzA/info/1dqzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dqzA/nostruct-align/1dqzA.t04.a2m.gz, have 226695 columns in 936 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lyvA/nostruct-align/1lyvA.t04.a2m.gz # 1lyvA.t04.a2m with 1653 sequences, total weight= 1653 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16079 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lyvA/info/1lyvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lyvA/nostruct-align/1lyvA.t04.a2m.gz, have 226978 columns in 937 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lb3A/nostruct-align/1lb3A.t04.a2m.gz # 1lb3A.t04.a2m with 523 sequences, total weight= 224.987 avg weight= 0.430185 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30671 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lb3A/info/1lb3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lb3A/nostruct-align/1lb3A.t04.a2m.gz, have 227145 columns in 938 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b8zA/nostruct-align/1b8zA.t04.a2m.gz # 1b8zA.t04.a2m with 358 sequences, total weight= 13.6141 avg weight= 0.0380281 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b8zA/info/1b8zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b8zA/nostruct-align/1b8zA.t04.a2m.gz, have 227212 columns in 939 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rkuA/nostruct-align/1rkuA.t04.a2m.gz # 1rkuA.t04.a2m with 2999 sequences, total weight= 2999 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02697 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rkuA/info/1rkuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rkuA/nostruct-align/1rkuA.t04.a2m.gz, have 227418 columns in 940 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjuA/nostruct-align/1vjuA.t04.a2m.gz # 1vjuA.t04.a2m with 135 sequences, total weight= 6.75301 avg weight= 0.0500223 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjuA/info/1vjuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vjuA/nostruct-align/1vjuA.t04.a2m.gz, have 227709 columns in 941 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogwA/nostruct-align/1ogwA.t04.a2m.gz # 1ogwA.t04.a2m with 2021 sequences, total weight= 78.7131 avg weight= 0.0389476 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30881 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogwA/info/1ogwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ogwA/nostruct-align/1ogwA.t04.a2m.gz, have 227785 columns in 942 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r1tA/nostruct-align/1r1tA.t04.a2m.gz # 1r1tA.t04.a2m with 985 sequences, total weight= 985 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09649 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r1tA/info/1r1tA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r1tA/nostruct-align/1r1tA.t04.a2m.gz, have 227883 columns in 943 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnhA/nostruct-align/1nnhA.t04.a2m.gz # 1nnhA.t04.a2m with 1336 sequences, total weight= 1336 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16412 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnhA/info/1nnhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nnhA/nostruct-align/1nnhA.t04.a2m.gz, have 228176 columns in 944 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t04.a2m.gz # 1uteA.t04.a2m with 1950 sequences, total weight= 1950 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.676342 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uteA/info/1uteA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t04.a2m.gz, have 228478 columns in 945 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ks8A/nostruct-align/1ks8A.t04.a2m.gz # 1ks8A.t04.a2m with 332 sequences, total weight= 57.9971 avg weight= 0.17469 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30042 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ks8A/info/1ks8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1ks8A/nostruct-align/1ks8A.t04.a2m.gz, have 228911 columns in 946 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkiA/nostruct-align/1vkiA.t04.a2m.gz # 1vkiA.t04.a2m with 323 sequences, total weight= 323 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25887 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkiA/info/1vkiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vkiA/nostruct-align/1vkiA.t04.a2m.gz, have 229076 columns in 947 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ou8A/nostruct-align/1ou8A.t04.a2m.gz # 1ou8A.t04.a2m with 54 sequences, total weight= 7.64138 avg weight= 0.141507 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ou8A/info/1ou8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ou8A/nostruct-align/1ou8A.t04.a2m.gz, have 229182 columns in 948 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1ssxA/nostruct-align/1ssxA.t04.a2m.gz # 1ssxA.t04.a2m with 3079 sequences, total weight= 361.815 avg weight= 0.11751 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3386 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1ssxA/info/1ssxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1ssxA/nostruct-align/1ssxA.t04.a2m.gz, have 229380 columns in 949 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j6oA/nostruct-align/1j6oA.t04.a2m.gz # 1j6oA.t04.a2m with 732 sequences, total weight= 732 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.993806 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j6oA/info/1j6oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j6oA/nostruct-align/1j6oA.t04.a2m.gz, have 229640 columns in 950 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fp2A/nostruct-align/1fp2A.t04.a2m.gz # 1fp2A.t04.a2m with 3037 sequences, total weight= 3037 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.790316 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fp2A/info/1fp2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fp2A/nostruct-align/1fp2A.t04.a2m.gz, have 229985 columns in 951 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4aX/nostruct-align/1h4aX.t04.a2m.gz # 1h4aX.t04.a2m with 278 sequences, total weight= 32.2083 avg weight= 0.115857 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4aX/info/1h4aX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h4aX/nostruct-align/1h4aX.t04.a2m.gz, have 230158 columns in 952 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oywA/nostruct-align/1oywA.t04.a2m.gz # 1oywA.t04.a2m with 3056 sequences, total weight= 3056 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08549 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oywA/info/1oywA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oywA/nostruct-align/1oywA.t04.a2m.gz, have 230674 columns in 953 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t04.a2m.gz # 1mpgA.t04.a2m with 780 sequences, total weight= 780 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08081 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mpgA/info/1mpgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t04.a2m.gz, have 230956 columns in 954 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwgA/nostruct-align/1qwgA.t04.a2m.gz # 1qwgA.t04.a2m with 21 sequences, total weight= 11.4538 avg weight= 0.545418 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwgA/info/1qwgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qwgA/nostruct-align/1qwgA.t04.a2m.gz, have 231207 columns in 955 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v9fA/nostruct-align/1v9fA.t04.a2m.gz # 1v9fA.t04.a2m with 1003 sequences, total weight= 1003 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19676 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v9fA/info/1v9fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v9fA/nostruct-align/1v9fA.t04.a2m.gz, have 231457 columns in 956 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f7lA/nostruct-align/1f7lA.t04.a2m.gz # 1f7lA.t04.a2m with 309 sequences, total weight= 309 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19169 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f7lA/info/1f7lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f7lA/nostruct-align/1f7lA.t04.a2m.gz, have 231575 columns in 957 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ey4A/nostruct-align/1ey4A.t04.a2m.gz # 1ey4A.t04.a2m with 440 sequences, total weight= 440 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19635 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ey4A/info/1ey4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ey4A/nostruct-align/1ey4A.t04.a2m.gz, have 231711 columns in 958 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1os6A/nostruct-align/1os6A.t04.a2m.gz # 1os6A.t04.a2m with 73 sequences, total weight= 29.3891 avg weight= 0.40259 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1os6A/info/1os6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1os6A/nostruct-align/1os6A.t04.a2m.gz, have 231782 columns in 959 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvzA/nostruct-align/1gvzA.t04.a2m.gz # 1gvzA.t04.a2m with 3086 sequences, total weight= 593.462 avg weight= 0.192308 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.34002 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvzA/info/1gvzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gvzA/nostruct-align/1gvzA.t04.a2m.gz, have 232019 columns in 960 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i1wA/nostruct-align/1i1wA.t04.a2m.gz # 1i1wA.t04.a2m with 445 sequences, total weight= 445 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09376 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i1wA/info/1i1wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i1wA/nostruct-align/1i1wA.t04.a2m.gz, have 232322 columns in 961 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t04.a2m.gz # 1ten.t04.a2m with 6742 sequences, total weight= 6742 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10264 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1ten/info/1ten.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t04.a2m.gz, have 232411 columns in 962 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvfA/nostruct-align/1gvfA.t04.a2m.gz # 1gvfA.t04.a2m with 311 sequences, total weight= 24.4696 avg weight= 0.0786803 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvfA/info/1gvfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gvfA/nostruct-align/1gvfA.t04.a2m.gz, have 232684 columns in 963 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t04.a2m.gz # 1mh1.t04.a2m with 3071 sequences, total weight= 3071 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27263 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mh1/info/1mh1.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t04.a2m.gz, have 232867 columns in 964 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gtkA/nostruct-align/1gtkA.t04.a2m.gz # 1gtkA.t04.a2m with 242 sequences, total weight= 18.8931 avg weight= 0.0780706 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gtkA/info/1gtkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gtkA/nostruct-align/1gtkA.t04.a2m.gz, have 233161 columns in 965 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pvmA/nostruct-align/1pvmA.t04.a2m.gz # 1pvmA.t04.a2m with 2543 sequences, total weight= 2543 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.954299 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pvmA/info/1pvmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pvmA/nostruct-align/1pvmA.t04.a2m.gz, have 233339 columns in 966 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnA/nostruct-align/1hbnA.t04.a2m.gz # 1hbnA.t04.a2m with 120 sequences, total weight= 5.12865 avg weight= 0.0427387 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnA/info/1hbnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnA/nostruct-align/1hbnA.t04.a2m.gz, have 233886 columns in 967 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1deuA/nostruct-align/1deuA.t04.a2m.gz # 1deuA.t04.a2m with 1446 sequences, total weight= 1446 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27484 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1deuA/info/1deuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1deuA/nostruct-align/1deuA.t04.a2m.gz, have 234161 columns in 968 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i9zA/nostruct-align/1i9zA.t04.a2m.gz # 1i9zA.t04.a2m with 999 sequences, total weight= 999 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.969151 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i9zA/info/1i9zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i9zA/nostruct-align/1i9zA.t04.a2m.gz, have 234497 columns in 969 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexB/nostruct-align/1eexB.t04.a2m.gz # 1eexB.t04.a2m with 33 sequences, total weight= 10.0222 avg weight= 0.303704 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexB/info/1eexB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eexB/nostruct-align/1eexB.t04.a2m.gz, have 234675 columns in 970 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h16A/nostruct-align/1h16A.t04.a2m.gz # 1h16A.t04.a2m with 191 sequences, total weight= 51.4443 avg weight= 0.269342 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h16A/info/1h16A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h16A/nostruct-align/1h16A.t04.a2m.gz, have 235434 columns in 971 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m0kA/nostruct-align/1m0kA.t04.a2m.gz # 1m0kA.t04.a2m with 142 sequences, total weight= 35.1538 avg weight= 0.247562 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m0kA/info/1m0kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m0kA/nostruct-align/1m0kA.t04.a2m.gz, have 235656 columns in 972 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wkqA/nostruct-align/1wkqA.t04.a2m.gz # 1wkqA.t04.a2m with 879 sequences, total weight= 879 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14158 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wkqA/info/1wkqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wkqA/nostruct-align/1wkqA.t04.a2m.gz, have 235814 columns in 973 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexG/nostruct-align/1eexG.t04.a2m.gz # 1eexG.t04.a2m with 17 sequences, total weight= 3.73795 avg weight= 0.219879 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexG/info/1eexG.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eexG/nostruct-align/1eexG.t04.a2m.gz, have 235951 columns in 974 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhtA/nostruct-align/1vhtA.t04.a2m.gz # 1vhtA.t04.a2m with 2711 sequences, total weight= 2711 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.84515 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhtA/info/1vhtA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhtA/nostruct-align/1vhtA.t04.a2m.gz, have 236159 columns in 975 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrzA/nostruct-align/1nrzA.t04.a2m.gz # 1nrzA.t04.a2m with 130 sequences, total weight= 24.0871 avg weight= 0.185285 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrzA/info/1nrzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nrzA/nostruct-align/1nrzA.t04.a2m.gz, have 236322 columns in 976 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t04.a2m.gz # 1m6pA.t04.a2m with 422 sequences, total weight= 97.0718 avg weight= 0.230028 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30284 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6pA/info/1m6pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t04.a2m.gz, have 236468 columns in 977 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kfcA/nostruct-align/1kfcA.t04.a2m.gz # 1kfcA.t04.a2m with 904 sequences, total weight= 904 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10434 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kfcA/info/1kfcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kfcA/nostruct-align/1kfcA.t04.a2m.gz, have 236722 columns in 978 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1epxA/nostruct-align/1epxA.t04.a2m.gz # 1epxA.t04.a2m with 368 sequences, total weight= 14.1053 avg weight= 0.0383296 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1epxA/info/1epxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1epxA/nostruct-align/1epxA.t04.a2m.gz, have 237079 columns in 979 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i2tA/nostruct-align/1i2tA.t04.a2m.gz # 1i2tA.t04.a2m with 138 sequences, total weight= 7.16748 avg weight= 0.0519383 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i2tA/info/1i2tA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i2tA/nostruct-align/1i2tA.t04.a2m.gz, have 237140 columns in 980 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnlA/nostruct-align/1nnlA.t04.a2m.gz # 1nnlA.t04.a2m with 2997 sequences, total weight= 2997 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0654 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnlA/info/1nnlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nnlA/nostruct-align/1nnlA.t04.a2m.gz, have 237345 columns in 981 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54G/nostruct-align/1v54G.t04.a2m.gz # 1v54G.t04.a2m with 47 sequences, total weight= 10.054 avg weight= 0.213914 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54G/info/1v54G.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v54G/nostruct-align/1v54G.t04.a2m.gz, have 237429 columns in 982 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hw1A/nostruct-align/1hw1A.t04.a2m.gz # 1hw1A.t04.a2m with 2244 sequences, total weight= 2244 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.865084 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hw1A/info/1hw1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hw1A/nostruct-align/1hw1A.t04.a2m.gz, have 237655 columns in 983 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t04.a2m.gz # 1al3.t04.a2m with 3001 sequences, total weight= 3001 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03166 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1al3/info/1al3.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t04.a2m.gz, have 237892 columns in 984 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2yA/nostruct-align/1w2yA.t04.a2m.gz # 1w2yA.t04.a2m with 41 sequences, total weight= 28.4135 avg weight= 0.693013 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2yA/info/1w2yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w2yA/nostruct-align/1w2yA.t04.a2m.gz, have 238118 columns in 985 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t04.a2m.gz # 1tx4A.t04.a2m with 844 sequences, total weight= 844 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22349 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tx4A/info/1tx4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t04.a2m.gz, have 238314 columns in 986 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fj2A/nostruct-align/1fj2A.t04.a2m.gz # 1fj2A.t04.a2m with 3006 sequences, total weight= 3006 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.843095 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fj2A/info/1fj2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fj2A/nostruct-align/1fj2A.t04.a2m.gz, have 238543 columns in 987 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2wA/nostruct-align/1w2wA.t04.a2m.gz # 1w2wA.t04.a2m with 128 sequences, total weight= 23.6033 avg weight= 0.184401 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2wA/info/1w2wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w2wA/nostruct-align/1w2wA.t04.a2m.gz, have 238754 columns in 988 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0mA/nostruct-align/1r0mA.t04.a2m.gz # 1r0mA.t04.a2m with 1271 sequences, total weight= 1271 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23026 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0mA/info/1r0mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r0mA/nostruct-align/1r0mA.t04.a2m.gz, have 239114 columns in 989 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c4qA/nostruct-align/1c4qA.t04.a2m.gz # 1c4qA.t04.a2m with 70 sequences, total weight= 3.00253 avg weight= 0.0428933 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c4qA/info/1c4qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c4qA/nostruct-align/1c4qA.t04.a2m.gz, have 239183 columns in 990 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sxrA/nostruct-align/1sxrA.t04.a2m.gz # 1sxrA.t04.a2m with 364 sequences, total weight= 299.205 avg weight= 0.821991 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30219 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sxrA/info/1sxrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sxrA/nostruct-align/1sxrA.t04.a2m.gz, have 239356 columns in 991 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t04.a2m.gz # 1utg.t04.a2m with 18 sequences, total weight= 3.39832 avg weight= 0.188795 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1utg/info/1utg.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t04.a2m.gz, have 239426 columns in 992 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t04.a2m.gz # 1npk.t04.a2m with 453 sequences, total weight= 36.033 avg weight= 0.0795429 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npk/info/1npk.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t04.a2m.gz, have 239576 columns in 993 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62A/nostruct-align/1n62A.t04.a2m.gz # 1n62A.t04.a2m with 659 sequences, total weight= 157.546 avg weight= 0.239068 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.311 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62A/info/1n62A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n62A/nostruct-align/1n62A.t04.a2m.gz, have 239737 columns in 994 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mg4A/nostruct-align/1mg4A.t04.a2m.gz # 1mg4A.t04.a2m with 158 sequences, total weight= 28.1327 avg weight= 0.178055 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mg4A/info/1mg4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mg4A/nostruct-align/1mg4A.t04.a2m.gz, have 239838 columns in 995 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llfA/nostruct-align/1llfA.t04.a2m.gz # 1llfA.t04.a2m with 2515 sequences, total weight= 2515 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00629 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llfA/info/1llfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1llfA/nostruct-align/1llfA.t04.a2m.gz, have 240372 columns in 996 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1vA/nostruct-align/1t1vA.t04.a2m.gz # 1t1vA.t04.a2m with 479 sequences, total weight= 130.53 avg weight= 0.272506 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30616 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1vA/info/1t1vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t1vA/nostruct-align/1t1vA.t04.a2m.gz, have 240465 columns in 997 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j0pA/nostruct-align/1j0pA.t04.a2m.gz # 1j0pA.t04.a2m with 91 sequences, total weight= 57.7636 avg weight= 0.634765 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j0pA/info/1j0pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j0pA/nostruct-align/1j0pA.t04.a2m.gz, have 240573 columns in 998 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1omrA/nostruct-align/1omrA.t04.a2m.gz # 1omrA.t04.a2m with 3065 sequences, total weight= 3065 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.920273 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1omrA/info/1omrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1omrA/nostruct-align/1omrA.t04.a2m.gz, have 240774 columns in 999 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f60A/nostruct-align/1f60A.t04.a2m.gz # 1f60A.t04.a2m with 3004 sequences, total weight= 18.7629 avg weight= 0.00624597 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f60A/info/1f60A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f60A/nostruct-align/1f60A.t04.a2m.gz, have 241214 columns in 1000 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t04.a2m.gz # 1gvp.t04.a2m with 28 sequences, total weight= 4.45569 avg weight= 0.159132 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvp/info/1gvp.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t04.a2m.gz, have 241301 columns in 1001 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1knmA/nostruct-align/1knmA.t04.a2m.gz # 1knmA.t04.a2m with 531 sequences, total weight= 531 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12092 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1knmA/info/1knmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1knmA/nostruct-align/1knmA.t04.a2m.gz, have 241430 columns in 1002 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t2wA/nostruct-align/1t2wA.t04.a2m.gz # 1t2wA.t04.a2m with 206 sequences, total weight= 120.148 avg weight= 0.583243 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30175 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t2wA/info/1t2wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t2wA/nostruct-align/1t2wA.t04.a2m.gz, have 241575 columns in 1003 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9gA/nostruct-align/1o9gA.t04.a2m.gz # 1o9gA.t04.a2m with 3 sequences, total weight= 1.78149 avg weight= 0.593831 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9gA/info/1o9gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o9gA/nostruct-align/1o9gA.t04.a2m.gz, have 241824 columns in 1004 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fjjA/nostruct-align/1fjjA.t04.a2m.gz # 1fjjA.t04.a2m with 306 sequences, total weight= 306 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28064 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fjjA/info/1fjjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fjjA/nostruct-align/1fjjA.t04.a2m.gz, have 241983 columns in 1005 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t04.a2m.gz # 1ccwB.t04.a2m with 167 sequences, total weight= 55.1511 avg weight= 0.330246 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ccwB/info/1ccwB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t04.a2m.gz, have 242466 columns in 1006 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5dX/nostruct-align/1p5dX.t04.a2m.gz # 1p5dX.t04.a2m with 1363 sequences, total weight= 1040.76 avg weight= 0.76358 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30695 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5dX/info/1p5dX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p5dX/nostruct-align/1p5dX.t04.a2m.gz, have 242921 columns in 1007 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1josA/nostruct-align/1josA.t04.a2m.gz # 1josA.t04.a2m with 196 sequences, total weight= 35.4557 avg weight= 0.180896 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1josA/info/1josA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1josA/nostruct-align/1josA.t04.a2m.gz, have 243021 columns in 1008 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t04.a2m.gz # 1kpf.t04.a2m with 576 sequences, total weight= 576 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23285 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kpf/info/1kpf.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t04.a2m.gz, have 243132 columns in 1009 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eg2A/nostruct-align/1eg2A.t04.a2m.gz # 1eg2A.t04.a2m with 500 sequences, total weight= 500 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.97226 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eg2A/info/1eg2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eg2A/nostruct-align/1eg2A.t04.a2m.gz, have 243402 columns in 1010 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucsA/nostruct-align/1ucsA.t04.a2m.gz # 1ucsA.t04.a2m with 58 sequences, total weight= 3.09944 avg weight= 0.0534386 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucsA/info/1ucsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ucsA/nostruct-align/1ucsA.t04.a2m.gz, have 243466 columns in 1011 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sdiA/nostruct-align/1sdiA.t04.a2m.gz # 1sdiA.t04.a2m with 50 sequences, total weight= 9.13025 avg weight= 0.182605 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sdiA/info/1sdiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sdiA/nostruct-align/1sdiA.t04.a2m.gz, have 243679 columns in 1012 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1obdA/nostruct-align/1obdA.t04.a2m.gz # 1obdA.t04.a2m with 250 sequences, total weight= 40.0928 avg weight= 0.160371 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1obdA/info/1obdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1obdA/nostruct-align/1obdA.t04.a2m.gz, have 243977 columns in 1013 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rx0A/nostruct-align/1rx0A.t04.a2m.gz # 1rx0A.t04.a2m with 1909 sequences, total weight= 1909 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11955 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rx0A/info/1rx0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rx0A/nostruct-align/1rx0A.t04.a2m.gz, have 244361 columns in 1014 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p99A/nostruct-align/1p99A.t04.a2m.gz # 1p99A.t04.a2m with 741 sequences, total weight= 741 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09449 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p99A/info/1p99A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p99A/nostruct-align/1p99A.t04.a2m.gz, have 244616 columns in 1015 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t04.a2m.gz # 2lisA.t04.a2m with 36 sequences, total weight= 11.0189 avg weight= 0.306082 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2l/2lisA/info/2lisA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t04.a2m.gz, have 244747 columns in 1016 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nvmA/nostruct-align/1nvmA.t04.a2m.gz # 1nvmA.t04.a2m with 821 sequences, total weight= 490.199 avg weight= 0.597075 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30966 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nvmA/info/1nvmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nvmA/nostruct-align/1nvmA.t04.a2m.gz, have 245087 columns in 1017 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1egwA/nostruct-align/1egwA.t04.a2m.gz # 1egwA.t04.a2m with 1288 sequences, total weight= 15.9304 avg weight= 0.0123683 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1egwA/info/1egwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1egwA/nostruct-align/1egwA.t04.a2m.gz, have 245158 columns in 1018 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jmkC/nostruct-align/1jmkC.t04.a2m.gz # 1jmkC.t04.a2m with 3011 sequences, total weight= 3011 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.870538 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jmkC/info/1jmkC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jmkC/nostruct-align/1jmkC.t04.a2m.gz, have 245380 columns in 1019 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1duvG/nostruct-align/1duvG.t04.a2m.gz # 1duvG.t04.a2m with 651 sequences, total weight= 43.4904 avg weight= 0.0668055 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1duvG/info/1duvG.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1duvG/nostruct-align/1duvG.t04.a2m.gz, have 245713 columns in 1020 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rocA/nostruct-align/1rocA.t04.a2m.gz # 1rocA.t04.a2m with 43 sequences, total weight= 8.13783 avg weight= 0.189252 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rocA/info/1rocA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rocA/nostruct-align/1rocA.t04.a2m.gz, have 245868 columns in 1021 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i71A/nostruct-align/1i71A.t04.a2m.gz # 1i71A.t04.a2m with 615 sequences, total weight= 22.2101 avg weight= 0.036114 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i71A/info/1i71A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i71A/nostruct-align/1i71A.t04.a2m.gz, have 245951 columns in 1022 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1umgA/nostruct-align/1umgA.t04.a2m.gz # 1umgA.t04.a2m with 26 sequences, total weight= 3.70662 avg weight= 0.142562 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1umgA/info/1umgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1umgA/nostruct-align/1umgA.t04.a2m.gz, have 246310 columns in 1023 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h5uA/nostruct-align/1h5uA.t04.a2m.gz # 1h5uA.t04.a2m with 498 sequences, total weight= 82.1305 avg weight= 0.164921 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30073 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h5uA/info/1h5uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h5uA/nostruct-align/1h5uA.t04.a2m.gz, have 247121 columns in 1024 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gkpA/nostruct-align/1gkpA.t04.a2m.gz # 1gkpA.t04.a2m with 1861 sequences, total weight= 1861 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.903898 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gkpA/info/1gkpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gkpA/nostruct-align/1gkpA.t04.a2m.gz, have 247579 columns in 1025 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pa7A/nostruct-align/1pa7A.t04.a2m.gz # 1pa7A.t04.a2m with 79 sequences, total weight= 11.7273 avg weight= 0.148447 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pa7A/info/1pa7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pa7A/nostruct-align/1pa7A.t04.a2m.gz, have 247709 columns in 1026 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnlA/nostruct-align/1gnlA.t04.a2m.gz # 1gnlA.t04.a2m with 130 sequences, total weight= 46.2518 avg weight= 0.355783 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnlA/info/1gnlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gnlA/nostruct-align/1gnlA.t04.a2m.gz, have 248252 columns in 1027 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t04.a2m.gz # 1bteA.t04.a2m with 72 sequences, total weight= 13.4385 avg weight= 0.186645 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bteA/info/1bteA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t04.a2m.gz, have 248344 columns in 1028 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gu2A/nostruct-align/1gu2A.t04.a2m.gz # 1gu2A.t04.a2m with 14 sequences, total weight= 7.23261 avg weight= 0.516615 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gu2A/info/1gu2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gu2A/nostruct-align/1gu2A.t04.a2m.gz, have 248468 columns in 1029 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l1lA/nostruct-align/1l1lA.t04.a2m.gz # 1l1lA.t04.a2m with 484 sequences, total weight= 484 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26348 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l1lA/info/1l1lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l1lA/nostruct-align/1l1lA.t04.a2m.gz, have 249185 columns in 1030 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e2wA/nostruct-align/1e2wA.t04.a2m.gz # 1e2wA.t04.a2m with 81 sequences, total weight= 4.20389 avg weight= 0.0518999 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e2wA/info/1e2wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e2wA/nostruct-align/1e2wA.t04.a2m.gz, have 249436 columns in 1031 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kt6A/nostruct-align/1kt6A.t04.a2m.gz # 1kt6A.t04.a2m with 502 sequences, total weight= 502 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.999895 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kt6A/info/1kt6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kt6A/nostruct-align/1kt6A.t04.a2m.gz, have 249611 columns in 1032 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t04.a2m.gz # 2mhr.t04.a2m with 136 sequences, total weight= 136 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27845 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2m/2mhr/info/2mhr.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t04.a2m.gz, have 249729 columns in 1033 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjoA/nostruct-align/1vjoA.t04.a2m.gz # 1vjoA.t04.a2m with 3003 sequences, total weight= 3003 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.965677 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjoA/info/1vjoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vjoA/nostruct-align/1vjoA.t04.a2m.gz, have 250106 columns in 1034 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqvA/nostruct-align/1mqvA.t04.a2m.gz # 1mqvA.t04.a2m with 68 sequences, total weight= 38.144 avg weight= 0.560941 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqvA/info/1mqvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mqvA/nostruct-align/1mqvA.t04.a2m.gz, have 250229 columns in 1035 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1io0A/nostruct-align/1io0A.t04.a2m.gz # 1io0A.t04.a2m with 89 sequences, total weight= 16.4245 avg weight= 0.184545 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1io0A/info/1io0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1io0A/nostruct-align/1io0A.t04.a2m.gz, have 250395 columns in 1036 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i40A/nostruct-align/1i40A.t04.a2m.gz # 1i40A.t04.a2m with 338 sequences, total weight= 25.5899 avg weight= 0.0757098 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i40A/info/1i40A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i40A/nostruct-align/1i40A.t04.a2m.gz, have 250570 columns in 1037 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t0bA/nostruct-align/1t0bA.t04.a2m.gz # 1t0bA.t04.a2m with 73 sequences, total weight= 73 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1171 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t0bA/info/1t0bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t0bA/nostruct-align/1t0bA.t04.a2m.gz, have 250810 columns in 1038 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxaA/nostruct-align/1uxaA.t04.a2m.gz # 1uxaA.t04.a2m with 82 sequences, total weight= 15.6893 avg weight= 0.191333 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxaA/info/1uxaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uxaA/nostruct-align/1uxaA.t04.a2m.gz, have 250995 columns in 1039 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t04.a2m.gz # 1cjwA.t04.a2m with 3049 sequences, total weight= 3049 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.816505 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cjwA/info/1cjwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t04.a2m.gz, have 251161 columns in 1040 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t04.a2m.gz # 8abp.t04.a2m with 1814 sequences, total weight= 1814 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.984819 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/8a/8abp/info/8abp.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t04.a2m.gz, have 251466 columns in 1041 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t04.a2m.gz # 2bopA.t04.a2m with 172 sequences, total weight= 14.7747 avg weight= 0.0858995 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bopA/info/2bopA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t04.a2m.gz, have 251551 columns in 1042 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t04.a2m.gz # 1qmgA.t04.a2m with 2026 sequences, total weight= 2026 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1301 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qmgA/info/1qmgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t04.a2m.gz, have 252065 columns in 1043 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jovA/nostruct-align/1jovA.t04.a2m.gz # 1jovA.t04.a2m with 388 sequences, total weight= 388 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1404 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jovA/info/1jovA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jovA/nostruct-align/1jovA.t04.a2m.gz, have 252334 columns in 1044 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e85A/nostruct-align/1e85A.t04.a2m.gz # 1e85A.t04.a2m with 67 sequences, total weight= 44.5983 avg weight= 0.665646 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e85A/info/1e85A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e85A/nostruct-align/1e85A.t04.a2m.gz, have 252459 columns in 1045 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hqkA/nostruct-align/1hqkA.t04.a2m.gz # 1hqkA.t04.a2m with 293 sequences, total weight= 22.332 avg weight= 0.0762185 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hqkA/info/1hqkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hqkA/nostruct-align/1hqkA.t04.a2m.gz, have 252613 columns in 1046 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t04.a2m.gz # 1c75A.t04.a2m with 742 sequences, total weight= 220.013 avg weight= 0.296513 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31744 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c75A/info/1c75A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t04.a2m.gz, have 252684 columns in 1047 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t04.a2m.gz # 1dg6A.t04.a2m with 287 sequences, total weight= 51.8138 avg weight= 0.180536 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30063 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dg6A/info/1dg6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t04.a2m.gz, have 252833 columns in 1048 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1syyA/nostruct-align/1syyA.t04.a2m.gz # 1syyA.t04.a2m with 439 sequences, total weight= 311.977 avg weight= 0.710654 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30423 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1syyA/info/1syyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1syyA/nostruct-align/1syyA.t04.a2m.gz, have 253150 columns in 1049 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vknA/nostruct-align/1vknA.t04.a2m.gz # 1vknA.t04.a2m with 2621 sequences, total weight= 2540.18 avg weight= 0.969165 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30088 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vknA/info/1vknA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vknA/nostruct-align/1vknA.t04.a2m.gz, have 253490 columns in 1050 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t04.a2m.gz # 1a62.t04.a2m with 189 sequences, total weight= 12.361 avg weight= 0.0654021 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a62/info/1a62.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t04.a2m.gz, have 253615 columns in 1051 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6bA/nostruct-align/1e6bA.t04.a2m.gz # 1e6bA.t04.a2m with 2508 sequences, total weight= 2508 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03321 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6bA/info/1e6bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e6bA/nostruct-align/1e6bA.t04.a2m.gz, have 253809 columns in 1052 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t04.a2m.gz # 1nzyA.t04.a2m with 1619 sequences, total weight= 1619 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18414 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nzyA/info/1nzyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t04.a2m.gz, have 254078 columns in 1053 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r7jA/nostruct-align/1r7jA.t04.a2m.gz # 1r7jA.t04.a2m with 27 sequences, total weight= 23.1611 avg weight= 0.85782 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r7jA/info/1r7jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r7jA/nostruct-align/1r7jA.t04.a2m.gz, have 254168 columns in 1054 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t04.a2m.gz # 1bgc.t04.a2m with 90 sequences, total weight= 15.3843 avg weight= 0.170937 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bgc/info/1bgc.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t04.a2m.gz, have 254326 columns in 1055 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j1yA/nostruct-align/1j1yA.t04.a2m.gz # 1j1yA.t04.a2m with 834 sequences, total weight= 834 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00486 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j1yA/info/1j1yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j1yA/nostruct-align/1j1yA.t04.a2m.gz, have 254442 columns in 1056 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qxyA/nostruct-align/1qxyA.t04.a2m.gz # 1qxyA.t04.a2m with 1051 sequences, total weight= 1051 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19827 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qxyA/info/1qxyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qxyA/nostruct-align/1qxyA.t04.a2m.gz, have 254691 columns in 1057 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oz2A/nostruct-align/1oz2A.t04.a2m.gz # 1oz2A.t04.a2m with 125 sequences, total weight= 33.989 avg weight= 0.271912 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oz2A/info/1oz2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oz2A/nostruct-align/1oz2A.t04.a2m.gz, have 255015 columns in 1058 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1shuX/nostruct-align/1shuX.t04.a2m.gz # 1shuX.t04.a2m with 2436 sequences, total weight= 2436 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.969724 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1shuX/info/1shuX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1shuX/nostruct-align/1shuX.t04.a2m.gz, have 255196 columns in 1059 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h8uA/nostruct-align/1h8uA.t04.a2m.gz # 1h8uA.t04.a2m with 2052 sequences, total weight= 2052 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07273 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h8uA/info/1h8uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h8uA/nostruct-align/1h8uA.t04.a2m.gz, have 255311 columns in 1060 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oc7A/nostruct-align/1oc7A.t04.a2m.gz # 1oc7A.t04.a2m with 96 sequences, total weight= 19.0039 avg weight= 0.197957 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oc7A/info/1oc7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oc7A/nostruct-align/1oc7A.t04.a2m.gz, have 255675 columns in 1061 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ufoA/nostruct-align/1ufoA.t04.a2m.gz # 1ufoA.t04.a2m with 3005 sequences, total weight= 3005 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.8713 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ufoA/info/1ufoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ufoA/nostruct-align/1ufoA.t04.a2m.gz, have 255913 columns in 1062 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ji7A/nostruct-align/1ji7A.t04.a2m.gz # 1ji7A.t04.a2m with 155 sequences, total weight= 24.779 avg weight= 0.159865 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ji7A/info/1ji7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1ji7A/nostruct-align/1ji7A.t04.a2m.gz, have 255990 columns in 1063 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wkrA/nostruct-align/1wkrA.t04.a2m.gz # 1wkrA.t04.a2m with 1122 sequences, total weight= 1122 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22927 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wkrA/info/1wkrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wkrA/nostruct-align/1wkrA.t04.a2m.gz, have 256330 columns in 1064 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nszA/nostruct-align/1nszA.t04.a2m.gz # 1nszA.t04.a2m with 382 sequences, total weight= 382 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1676 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nszA/info/1nszA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nszA/nostruct-align/1nszA.t04.a2m.gz, have 256670 columns in 1065 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q74A/nostruct-align/1q74A.t04.a2m.gz # 1q74A.t04.a2m with 216 sequences, total weight= 216 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02984 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q74A/info/1q74A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q74A/nostruct-align/1q74A.t04.a2m.gz, have 256957 columns in 1066 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t04.a2m.gz # 1dd9A.t04.a2m with 425 sequences, total weight= 425 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06246 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dd9A/info/1dd9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t04.a2m.gz, have 257267 columns in 1067 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t04.a2m.gz # 1mml.t04.a2m with 3001 sequences, total weight= 3.14458 avg weight= 0.00104784 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mml/info/1mml.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t04.a2m.gz, have 257518 columns in 1068 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t04.a2m.gz # 1aquA.t04.a2m with 617 sequences, total weight= 617 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.969963 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aquA/info/1aquA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t04.a2m.gz, have 257799 columns in 1069 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i2kA/nostruct-align/1i2kA.t04.a2m.gz # 1i2kA.t04.a2m with 561 sequences, total weight= 561 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23414 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i2kA/info/1i2kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i2kA/nostruct-align/1i2kA.t04.a2m.gz, have 258068 columns in 1070 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sc3A/nostruct-align/1sc3A.t04.a2m.gz # 1sc3A.t04.a2m with 278 sequences, total weight= 67.1239 avg weight= 0.241453 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30156 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sc3A/info/1sc3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sc3A/nostruct-align/1sc3A.t04.a2m.gz, have 258241 columns in 1071 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m9zA/nostruct-align/1m9zA.t04.a2m.gz # 1m9zA.t04.a2m with 26 sequences, total weight= 3.47533 avg weight= 0.133667 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m9zA/info/1m9zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m9zA/nostruct-align/1m9zA.t04.a2m.gz, have 258346 columns in 1072 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c1dA/nostruct-align/1c1dA.t04.a2m.gz # 1c1dA.t04.a2m with 967 sequences, total weight= 967 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2504 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c1dA/info/1c1dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c1dA/nostruct-align/1c1dA.t04.a2m.gz, have 258695 columns in 1073 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vk5A/nostruct-align/1vk5A.t04.a2m.gz # 1vk5A.t04.a2m with 3 sequences, total weight= 2.04506 avg weight= 0.681686 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vk5A/info/1vk5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vk5A/nostruct-align/1vk5A.t04.a2m.gz, have 258816 columns in 1074 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ie9A/nostruct-align/1ie9A.t04.a2m.gz # 1ie9A.t04.a2m with 1928 sequences, total weight= 1928 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.892647 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ie9A/info/1ie9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ie9A/nostruct-align/1ie9A.t04.a2m.gz, have 259071 columns in 1075 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54A/nostruct-align/1v54A.t04.a2m.gz # 1v54A.t04.a2m with 3001 sequences, total weight= 5.37863 avg weight= 0.00179228 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54A/info/1v54A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v54A/nostruct-align/1v54A.t04.a2m.gz, have 259585 columns in 1076 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nogA/nostruct-align/1nogA.t04.a2m.gz # 1nogA.t04.a2m with 115 sequences, total weight= 17.7308 avg weight= 0.154181 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nogA/info/1nogA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nogA/nostruct-align/1nogA.t04.a2m.gz, have 259734 columns in 1077 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t04.a2m.gz # 1ay7B.t04.a2m with 41 sequences, total weight= 30.464 avg weight= 0.743024 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ay7B/info/1ay7B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t04.a2m.gz, have 259823 columns in 1078 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t04.a2m.gz # 1cruA.t04.a2m with 572 sequences, total weight= 572 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.967151 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cruA/info/1cruA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t04.a2m.gz, have 260271 columns in 1079 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dc1A/nostruct-align/1dc1A.t04.a2m.gz # 1dc1A.t04.a2m with 5 sequences, total weight= 2.2793 avg weight= 0.45586 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dc1A/info/1dc1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dc1A/nostruct-align/1dc1A.t04.a2m.gz, have 260581 columns in 1080 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t04.a2m.gz # 1kid.t04.a2m with 1377 sequences, total weight= 14.3177 avg weight= 0.0103977 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kid/info/1kid.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t04.a2m.gz, have 260774 columns in 1081 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rliA/nostruct-align/1rliA.t04.a2m.gz # 1rliA.t04.a2m with 1073 sequences, total weight= 1073 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.998962 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rliA/info/1rliA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rliA/nostruct-align/1rliA.t04.a2m.gz, have 260930 columns in 1082 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t04.a2m.gz # 1moq.t04.a2m with 1294 sequences, total weight= 1294 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05863 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1moq/info/1moq.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t04.a2m.gz, have 261296 columns in 1083 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryqA/nostruct-align/1ryqA.t04.a2m.gz # 1ryqA.t04.a2m with 58 sequences, total weight= 12.8488 avg weight= 0.22153 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryqA/info/1ryqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ryqA/nostruct-align/1ryqA.t04.a2m.gz, have 261360 columns in 1084 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fm0E/nostruct-align/1fm0E.t04.a2m.gz # 1fm0E.t04.a2m with 161 sequences, total weight= 32.1547 avg weight= 0.199718 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fm0E/info/1fm0E.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fm0E/nostruct-align/1fm0E.t04.a2m.gz, have 261502 columns in 1085 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e7lA/nostruct-align/1e7lA.t04.a2m.gz # 1e7lA.t04.a2m with 16 sequences, total weight= 10.2644 avg weight= 0.641524 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e7lA/info/1e7lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e7lA/nostruct-align/1e7lA.t04.a2m.gz, have 261659 columns in 1086 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q92A/nostruct-align/1q92A.t04.a2m.gz # 1q92A.t04.a2m with 1481 sequences, total weight= 1481 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.935337 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q92A/info/1q92A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q92A/nostruct-align/1q92A.t04.a2m.gz, have 261854 columns in 1087 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyeA/nostruct-align/1jyeA.t04.a2m.gz # 1jyeA.t04.a2m with 1853 sequences, total weight= 1853 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01422 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyeA/info/1jyeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jyeA/nostruct-align/1jyeA.t04.a2m.gz, have 262125 columns in 1088 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t04.a2m.gz # 1lst.t04.a2m with 2168 sequences, total weight= 2168 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.926174 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lst/info/1lst.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t04.a2m.gz, have 262363 columns in 1089 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwoA/nostruct-align/1qwoA.t04.a2m.gz # 1qwoA.t04.a2m with 428 sequences, total weight= 428 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02516 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwoA/info/1qwoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qwoA/nostruct-align/1qwoA.t04.a2m.gz, have 262798 columns in 1090 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k1eA/nostruct-align/1k1eA.t04.a2m.gz # 1k1eA.t04.a2m with 249 sequences, total weight= 249 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25542 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k1eA/info/1k1eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k1eA/nostruct-align/1k1eA.t04.a2m.gz, have 262975 columns in 1091 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t04.a2m.gz # 2hft.t04.a2m with 379 sequences, total weight= 379 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07441 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2h/2hft/info/2hft.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t04.a2m.gz, have 263180 columns in 1092 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t04.a2m.gz # 19hcA.t04.a2m with 431 sequences, total weight= 431 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.791415 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/19/19hcA/info/19hcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t04.a2m.gz, have 263472 columns in 1093 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g66A/nostruct-align/1g66A.t04.a2m.gz # 1g66A.t04.a2m with 173 sequences, total weight= 106.55 avg weight= 0.615899 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30093 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g66A/info/1g66A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g66A/nostruct-align/1g66A.t04.a2m.gz, have 263679 columns in 1094 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wmzA/nostruct-align/1wmzA.t04.a2m.gz # 1wmzA.t04.a2m with 2513 sequences, total weight= 2513 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.996131 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wmzA/info/1wmzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wmzA/nostruct-align/1wmzA.t04.a2m.gz, have 263819 columns in 1095 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew6A/nostruct-align/1ew6A.t04.a2m.gz # 1ew6A.t04.a2m with 4 sequences, total weight= 1.89822 avg weight= 0.474555 6 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew6A/info/1ew6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ew6A/nostruct-align/1ew6A.t04.a2m.gz, have 263956 columns in 1096 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h97A/nostruct-align/1h97A.t04.a2m.gz # 1h97A.t04.a2m with 1616 sequences, total weight= 333.977 avg weight= 0.206669 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32971 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h97A/info/1h97A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h97A/nostruct-align/1h97A.t04.a2m.gz, have 264103 columns in 1097 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t04.a2m.gz # 2nacA.t04.a2m with 2004 sequences, total weight= 2004 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14618 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2n/2nacA/info/2nacA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t04.a2m.gz, have 264477 columns in 1098 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0rA/nostruct-align/1i0rA.t04.a2m.gz # 1i0rA.t04.a2m with 413 sequences, total weight= 413 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21597 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0rA/info/1i0rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i0rA/nostruct-align/1i0rA.t04.a2m.gz, have 264638 columns in 1099 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nbuA/nostruct-align/1nbuA.t04.a2m.gz # 1nbuA.t04.a2m with 205 sequences, total weight= 62.0865 avg weight= 0.302861 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30159 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nbuA/info/1nbuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nbuA/nostruct-align/1nbuA.t04.a2m.gz, have 264756 columns in 1100 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sj1A/nostruct-align/1sj1A.t04.a2m.gz # 1sj1A.t04.a2m with 226 sequences, total weight= 72.6184 avg weight= 0.321321 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30139 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sj1A/info/1sj1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sj1A/nostruct-align/1sj1A.t04.a2m.gz, have 264822 columns in 1101 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gtvA/nostruct-align/1gtvA.t04.a2m.gz # 1gtvA.t04.a2m with 2540 sequences, total weight= 2540 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.830797 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gtvA/info/1gtvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gtvA/nostruct-align/1gtvA.t04.a2m.gz, have 265030 columns in 1102 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwzA/nostruct-align/1nwzA.t04.a2m.gz # 1nwzA.t04.a2m with 18 sequences, total weight= 4.50097 avg weight= 0.250054 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwzA/info/1nwzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nwzA/nostruct-align/1nwzA.t04.a2m.gz, have 265155 columns in 1103 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t04.a2m.gz # 1bqcA.t04.a2m with 2494 sequences, total weight= 2494 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.831001 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bqcA/info/1bqcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t04.a2m.gz, have 265457 columns in 1104 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl1A/nostruct-align/1vl1A.t04.a2m.gz # 1vl1A.t04.a2m with 391 sequences, total weight= 66.113 avg weight= 0.169087 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30032 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl1A/info/1vl1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vl1A/nostruct-align/1vl1A.t04.a2m.gz, have 265675 columns in 1105 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cqmA/nostruct-align/1cqmA.t04.a2m.gz # 1cqmA.t04.a2m with 215 sequences, total weight= 64.6739 avg weight= 0.300809 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30114 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cqmA/info/1cqmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cqmA/nostruct-align/1cqmA.t04.a2m.gz, have 265773 columns in 1106 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iktA/nostruct-align/1iktA.t04.a2m.gz # 1iktA.t04.a2m with 162 sequences, total weight= 74.8686 avg weight= 0.462152 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30103 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iktA/info/1iktA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iktA/nostruct-align/1iktA.t04.a2m.gz, have 265888 columns in 1107 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t04.a2m.gz # 1rhs.t04.a2m with 1300 sequences, total weight= 1300 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.993399 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rhs/info/1rhs.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t04.a2m.gz, have 266181 columns in 1108 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j8rA/nostruct-align/1j8rA.t04.a2m.gz # 1j8rA.t04.a2m with 27 sequences, total weight= 3.69298 avg weight= 0.136777 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j8rA/info/1j8rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j8rA/nostruct-align/1j8rA.t04.a2m.gz, have 266377 columns in 1109 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3xA/nostruct-align/1k3xA.t04.a2m.gz # 1k3xA.t04.a2m with 262 sequences, total weight= 58.4758 avg weight= 0.22319 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30053 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3xA/info/1k3xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k3xA/nostruct-align/1k3xA.t04.a2m.gz, have 266630 columns in 1110 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iooA/nostruct-align/1iooA.t04.a2m.gz # 1iooA.t04.a2m with 622 sequences, total weight= 132.658 avg weight= 0.213277 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30705 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iooA/info/1iooA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iooA/nostruct-align/1iooA.t04.a2m.gz, have 266826 columns in 1111 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gweA/nostruct-align/1gweA.t04.a2m.gz # 1gweA.t04.a2m with 611 sequences, total weight= 48.9863 avg weight= 0.0801739 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gweA/info/1gweA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gweA/nostruct-align/1gweA.t04.a2m.gz, have 267324 columns in 1112 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqvA/nostruct-align/1oqvA.t04.a2m.gz # 1oqvA.t04.a2m with 43 sequences, total weight= 4.51454 avg weight= 0.104989 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqvA/info/1oqvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oqvA/nostruct-align/1oqvA.t04.a2m.gz, have 267495 columns in 1113 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jlvA/nostruct-align/1jlvA.t04.a2m.gz # 1jlvA.t04.a2m with 2548 sequences, total weight= 2548 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00553 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jlvA/info/1jlvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jlvA/nostruct-align/1jlvA.t04.a2m.gz, have 267702 columns in 1114 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrvA/nostruct-align/1nrvA.t04.a2m.gz # 1nrvA.t04.a2m with 1474 sequences, total weight= 370.783 avg weight= 0.251549 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32125 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrvA/info/1nrvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nrvA/nostruct-align/1nrvA.t04.a2m.gz, have 267802 columns in 1115 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kcqA/nostruct-align/1kcqA.t04.a2m.gz # 1kcqA.t04.a2m with 832 sequences, total weight= 832 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14387 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kcqA/info/1kcqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kcqA/nostruct-align/1kcqA.t04.a2m.gz, have 267905 columns in 1116 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w53A/nostruct-align/1w53A.t04.a2m.gz # 1w53A.t04.a2m with 11 sequences, total weight= 3.79334 avg weight= 0.344849 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w53A/info/1w53A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w53A/nostruct-align/1w53A.t04.a2m.gz, have 267989 columns in 1117 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t04.a2m.gz # 1bdmA.t04.a2m with 2723 sequences, total weight= 2723 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04874 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bdmA/info/1bdmA.stride-mixed.near-backbone-11 WARNING: skipping a, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t04.a2m.gz, have 268306 columns in 1118 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t04.a2m.gz # 2ilk.t04.a2m with 111 sequences, total weight= 27.634 avg weight= 0.248955 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2i/2ilk/info/2ilk.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t04.a2m.gz, have 268461 columns in 1119 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2eA/nostruct-align/1h2eA.t04.a2m.gz # 1h2eA.t04.a2m with 1189 sequences, total weight= 1189 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05753 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2eA/info/1h2eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h2eA/nostruct-align/1h2eA.t04.a2m.gz, have 268668 columns in 1120 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uzbA/nostruct-align/1uzbA.t04.a2m.gz # 1uzbA.t04.a2m with 2614 sequences, total weight= 2448.09 avg weight= 0.936531 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3019 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uzbA/info/1uzbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uzbA/nostruct-align/1uzbA.t04.a2m.gz, have 269184 columns in 1121 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2fA/nostruct-align/1w2fA.t04.a2m.gz # 1w2fA.t04.a2m with 164 sequences, total weight= 54.8309 avg weight= 0.334335 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2fA/info/1w2fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w2fA/nostruct-align/1w2fA.t04.a2m.gz, have 269460 columns in 1122 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t04.a2m.gz # 1isuA.t04.a2m with 33 sequences, total weight= 10.7512 avg weight= 0.325794 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1isuA/info/1isuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t04.a2m.gz, have 269522 columns in 1123 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t04.a2m.gz # 1iab.t04.a2m with 657 sequences, total weight= 630.928 avg weight= 0.960316 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30081 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iab/info/1iab.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t04.a2m.gz, have 269722 columns in 1124 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t04.a2m.gz # 1qusA.t04.a2m with 166 sequences, total weight= 82.3329 avg weight= 0.495981 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30033 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qusA/info/1qusA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t04.a2m.gz, have 270034 columns in 1125 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mc2A/nostruct-align/1mc2A.t04.a2m.gz # 1mc2A.t04.a2m with 517 sequences, total weight= 20.6653 avg weight= 0.0399715 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mc2A/info/1mc2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mc2A/nostruct-align/1mc2A.t04.a2m.gz, have 270156 columns in 1126 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t04.a2m.gz # 1qtwA.t04.a2m with 798 sequences, total weight= 798 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.915672 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qtwA/info/1qtwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t04.a2m.gz, have 270441 columns in 1127 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t04.a2m.gz # 1vsrA.t04.a2m with 31 sequences, total weight= 12.332 avg weight= 0.397806 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vsrA/info/1vsrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t04.a2m.gz, have 270575 columns in 1128 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1na3A/nostruct-align/1na3A.t04.a2m.gz # 1na3A.t04.a2m with 5362 sequences, total weight= 5362 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.960902 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1na3A/info/1na3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1na3A/nostruct-align/1na3A.t04.a2m.gz, have 270661 columns in 1129 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t04.a2m.gz # 1lo7A.t04.a2m with 725 sequences, total weight= 725 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.976287 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t04.a2m.gz, have 270801 columns in 1130 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t04.a2m.gz # 1flmA.t04.a2m with 13 sequences, total weight= 5.76638 avg weight= 0.443568 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1flmA/info/1flmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t04.a2m.gz, have 270923 columns in 1131 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lb6A/nostruct-align/1lb6A.t04.a2m.gz # 1lb6A.t04.a2m with 196 sequences, total weight= 74.6114 avg weight= 0.380671 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30089 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lb6A/info/1lb6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lb6A/nostruct-align/1lb6A.t04.a2m.gz, have 271078 columns in 1132 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t04.a2m.gz # 1gci.t04.a2m with 1474 sequences, total weight= 1474 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2514 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gci/info/1gci.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t04.a2m.gz, have 271347 columns in 1133 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1juvA/nostruct-align/1juvA.t04.a2m.gz # 1juvA.t04.a2m with 488 sequences, total weight= 241.942 avg weight= 0.495784 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30251 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1juvA/info/1juvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1juvA/nostruct-align/1juvA.t04.a2m.gz, have 271540 columns in 1134 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t04.a2m.gz # 1d1qA.t04.a2m with 403 sequences, total weight= 188.949 avg weight= 0.468856 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30608 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d1qA/info/1d1qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t04.a2m.gz, have 271699 columns in 1135 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1unqA/nostruct-align/1unqA.t04.a2m.gz # 1unqA.t04.a2m with 2633 sequences, total weight= 2633 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.916361 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1unqA/info/1unqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1unqA/nostruct-align/1unqA.t04.a2m.gz, have 271816 columns in 1136 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g4yB/nostruct-align/1g4yB.t04.a2m.gz # 1g4yB.t04.a2m with 65 sequences, total weight= 4.67374 avg weight= 0.0719036 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g4yB/info/1g4yB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g4yB/nostruct-align/1g4yB.t04.a2m.gz, have 271897 columns in 1137 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1nA/nostruct-align/1m1nA.t04.a2m.gz # 1m1nA.t04.a2m with 639 sequences, total weight= 639 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26978 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1nA/info/1m1nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m1nA/nostruct-align/1m1nA.t04.a2m.gz, have 272374 columns in 1138 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tzpA/nostruct-align/1tzpA.t04.a2m.gz # 1tzpA.t04.a2m with 40 sequences, total weight= 7.59262 avg weight= 0.189815 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tzpA/info/1tzpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tzpA/nostruct-align/1tzpA.t04.a2m.gz, have 272614 columns in 1139 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n3lA/nostruct-align/1n3lA.t04.a2m.gz # 1n3lA.t04.a2m with 670 sequences, total weight= 670 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26793 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n3lA/info/1n3lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n3lA/nostruct-align/1n3lA.t04.a2m.gz, have 272946 columns in 1140 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1us0A/nostruct-align/1us0A.t04.a2m.gz # 1us0A.t04.a2m with 1767 sequences, total weight= 1767 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27585 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1us0A/info/1us0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1us0A/nostruct-align/1us0A.t04.a2m.gz, have 273259 columns in 1141 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l8rA/nostruct-align/1l8rA.t04.a2m.gz # 1l8rA.t04.a2m with 51 sequences, total weight= 2.54874 avg weight= 0.0499753 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l8rA/info/1l8rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l8rA/nostruct-align/1l8rA.t04.a2m.gz, have 273360 columns in 1142 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p9aG/nostruct-align/1p9aG.t04.a2m.gz # 1p9aG.t04.a2m with 4833 sequences, total weight= 4833 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04223 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p9aG/info/1p9aG.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p9aG/nostruct-align/1p9aG.t04.a2m.gz, have 273626 columns in 1143 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iqcA/nostruct-align/1iqcA.t04.a2m.gz # 1iqcA.t04.a2m with 268 sequences, total weight= 268 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.076 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iqcA/info/1iqcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iqcA/nostruct-align/1iqcA.t04.a2m.gz, have 273934 columns in 1144 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0dA/nostruct-align/1i0dA.t04.a2m.gz # 1i0dA.t04.a2m with 635 sequences, total weight= 635 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00716 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0dA/info/1i0dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i0dA/nostruct-align/1i0dA.t04.a2m.gz, have 274265 columns in 1145 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7eA/nostruct-align/1q7eA.t04.a2m.gz # 1q7eA.t04.a2m with 632 sequences, total weight= 170.51 avg weight= 0.269795 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30681 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7eA/info/1q7eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q7eA/nostruct-align/1q7eA.t04.a2m.gz, have 274675 columns in 1146 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t04.a2m.gz # 1tvxA.t04.a2m with 409 sequences, total weight= 35.5858 avg weight= 0.0870068 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30079 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tvxA/info/1tvxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t04.a2m.gz, have 274739 columns in 1147 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hz4A/nostruct-align/1hz4A.t04.a2m.gz # 1hz4A.t04.a2m with 18 sequences, total weight= 3.57393 avg weight= 0.198552 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hz4A/info/1hz4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hz4A/nostruct-align/1hz4A.t04.a2m.gz, have 275105 columns in 1148 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t04.a2m.gz # 1wer.t04.a2m with 207 sequences, total weight= 177.235 avg weight= 0.856208 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30129 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wer/info/1wer.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t04.a2m.gz, have 275429 columns in 1149 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w0pA/nostruct-align/1w0pA.t04.a2m.gz # 1w0pA.t04.a2m with 497 sequences, total weight= 497 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1199 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w0pA/info/1w0pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w0pA/nostruct-align/1w0pA.t04.a2m.gz, have 276182 columns in 1150 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qe3A/nostruct-align/1qe3A.t04.a2m.gz # 1qe3A.t04.a2m with 2882 sequences, total weight= 2882 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01075 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qe3A/info/1qe3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qe3A/nostruct-align/1qe3A.t04.a2m.gz, have 276649 columns in 1151 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jz8A/nostruct-align/1jz8A.t04.a2m.gz # 1jz8A.t04.a2m with 1224 sequences, total weight= 1224 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12088 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jz8A/info/1jz8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jz8A/nostruct-align/1jz8A.t04.a2m.gz, have 277660 columns in 1152 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t04.a2m.gz # 1lkkA.t04.a2m with 1379 sequences, total weight= 981.519 avg weight= 0.711762 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30907 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lkkA/info/1lkkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t04.a2m.gz, have 277765 columns in 1153 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t04.a2m.gz # 1qnaA.t04.a2m with 193 sequences, total weight= 21.4807 avg weight= 0.111299 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qnaA/info/1qnaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t04.a2m.gz, have 277947 columns in 1154 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n7oA/nostruct-align/1n7oA.t04.a2m.gz # 1n7oA.t04.a2m with 102 sequences, total weight= 98.6058 avg weight= 0.966723 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n7oA/info/1n7oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n7oA/nostruct-align/1n7oA.t04.a2m.gz, have 278668 columns in 1155 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5lA/nostruct-align/1r5lA.t04.a2m.gz # 1r5lA.t04.a2m with 487 sequences, total weight= 487 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03409 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5lA/info/1r5lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r5lA/nostruct-align/1r5lA.t04.a2m.gz, have 278919 columns in 1156 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wouA/nostruct-align/1wouA.t04.a2m.gz # 1wouA.t04.a2m with 2334 sequences, total weight= 2334 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16093 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wouA/info/1wouA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wouA/nostruct-align/1wouA.t04.a2m.gz, have 279038 columns in 1157 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ukfA/nostruct-align/1ukfA.t04.a2m.gz # 1ukfA.t04.a2m with 30 sequences, total weight= 23.4976 avg weight= 0.783254 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ukfA/info/1ukfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ukfA/nostruct-align/1ukfA.t04.a2m.gz, have 279226 columns in 1158 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jtgB/nostruct-align/1jtgB.t04.a2m.gz # 1jtgB.t04.a2m with 7 sequences, total weight= 4.49406 avg weight= 0.642009 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jtgB/info/1jtgB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jtgB/nostruct-align/1jtgB.t04.a2m.gz, have 279391 columns in 1159 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nz0A/nostruct-align/1nz0A.t04.a2m.gz # 1nz0A.t04.a2m with 171 sequences, total weight= 87.9281 avg weight= 0.5142 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3014 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nz0A/info/1nz0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nz0A/nostruct-align/1nz0A.t04.a2m.gz, have 279500 columns in 1160 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kw3B/nostruct-align/1kw3B.t04.a2m.gz # 1kw3B.t04.a2m with 1792 sequences, total weight= 1792 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.974929 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kw3B/info/1kw3B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kw3B/nostruct-align/1kw3B.t04.a2m.gz, have 279788 columns in 1161 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iv3A/nostruct-align/1iv3A.t04.a2m.gz # 1iv3A.t04.a2m with 166 sequences, total weight= 10.0511 avg weight= 0.0605491 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iv3A/info/1iv3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iv3A/nostruct-align/1iv3A.t04.a2m.gz, have 279938 columns in 1162 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5vA/nostruct-align/1p5vA.t04.a2m.gz # 1p5vA.t04.a2m with 286 sequences, total weight= 99.4109 avg weight= 0.347591 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30319 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5vA/info/1p5vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p5vA/nostruct-align/1p5vA.t04.a2m.gz, have 280129 columns in 1163 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi2A/nostruct-align/1oi2A.t04.a2m.gz # 1oi2A.t04.a2m with 139 sequences, total weight= 13.0699 avg weight= 0.0940278 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi2A/info/1oi2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oi2A/nostruct-align/1oi2A.t04.a2m.gz, have 280465 columns in 1164 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jf8A/nostruct-align/1jf8A.t04.a2m.gz # 1jf8A.t04.a2m with 403 sequences, total weight= 120.297 avg weight= 0.298503 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30641 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jf8A/info/1jf8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jf8A/nostruct-align/1jf8A.t04.a2m.gz, have 280595 columns in 1165 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t04.a2m.gz # 1b6a.t04.a2m with 1060 sequences, total weight= 1060 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18388 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b6a/info/1b6a.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t04.a2m.gz, have 280950 columns in 1166 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gudA/nostruct-align/1gudA.t04.a2m.gz # 1gudA.t04.a2m with 1854 sequences, total weight= 1854 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.959482 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gudA/info/1gudA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gudA/nostruct-align/1gudA.t04.a2m.gz, have 281238 columns in 1167 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7iA/nostruct-align/1k7iA.t04.a2m.gz # 1k7iA.t04.a2m with 1169 sequences, total weight= 1169 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10051 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7iA/info/1k7iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k7iA/nostruct-align/1k7iA.t04.a2m.gz, have 281700 columns in 1168 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t04.a2m.gz # 1a8o.t04.a2m with 3001 sequences, total weight= 2.93429 avg weight= 0.000977771 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a8o/info/1a8o.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t04.a2m.gz, have 281770 columns in 1169 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew4A/nostruct-align/1ew4A.t04.a2m.gz # 1ew4A.t04.a2m with 83 sequences, total weight= 18.6556 avg weight= 0.224766 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew4A/info/1ew4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ew4A/nostruct-align/1ew4A.t04.a2m.gz, have 281876 columns in 1170 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t04.a2m.gz # 3vub.t04.a2m with 28 sequences, total weight= 7.47934 avg weight= 0.267119 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3v/3vub/info/3vub.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t04.a2m.gz, have 281977 columns in 1171 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t04.a2m.gz # 2baa.t04.a2m with 475 sequences, total weight= 38.3724 avg weight= 0.0807841 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2baa/info/2baa.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t04.a2m.gz, have 282220 columns in 1172 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t04.a2m.gz # 2fdn.t04.a2m with 509 sequences, total weight= 21.4084 avg weight= 0.0420598 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30047 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2f/2fdn/info/2fdn.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t04.a2m.gz, have 282275 columns in 1173 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6xA/nostruct-align/1l6xA.t04.a2m.gz # 1l6xA.t04.a2m with 3685 sequences, total weight= 116.9 avg weight= 0.0317233 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31938 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6xA/info/1l6xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l6xA/nostruct-align/1l6xA.t04.a2m.gz, have 282482 columns in 1174 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smbA/nostruct-align/1smbA.t04.a2m.gz # 1smbA.t04.a2m with 629 sequences, total weight= 555.045 avg weight= 0.882425 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30229 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smbA/info/1smbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1smbA/nostruct-align/1smbA.t04.a2m.gz, have 282631 columns in 1175 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mxrA/nostruct-align/1mxrA.t04.a2m.gz # 1mxrA.t04.a2m with 411 sequences, total weight= 246.323 avg weight= 0.599326 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30386 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mxrA/info/1mxrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mxrA/nostruct-align/1mxrA.t04.a2m.gz, have 282970 columns in 1176 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t82A/nostruct-align/1t82A.t04.a2m.gz # 1t82A.t04.a2m with 213 sequences, total weight= 213 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13658 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t82A/info/1t82A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t82A/nostruct-align/1t82A.t04.a2m.gz, have 283113 columns in 1177 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n6aA/nostruct-align/1n6aA.t04.a2m.gz # 1n6aA.t04.a2m with 15 sequences, total weight= 2.28595 avg weight= 0.152397 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n6aA/info/1n6aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n6aA/nostruct-align/1n6aA.t04.a2m.gz, have 283347 columns in 1178 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ecsA/nostruct-align/1ecsA.t04.a2m.gz # 1ecsA.t04.a2m with 1683 sequences, total weight= 1683 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.877123 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ecsA/info/1ecsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ecsA/nostruct-align/1ecsA.t04.a2m.gz, have 283467 columns in 1179 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f7dA/nostruct-align/1f7dA.t04.a2m.gz # 1f7dA.t04.a2m with 749 sequences, total weight= 749 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21518 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f7dA/info/1f7dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f7dA/nostruct-align/1f7dA.t04.a2m.gz, have 283585 columns in 1180 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lk9A/nostruct-align/1lk9A.t04.a2m.gz # 1lk9A.t04.a2m with 3002 sequences, total weight= 3002 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02348 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lk9A/info/1lk9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lk9A/nostruct-align/1lk9A.t04.a2m.gz, have 284010 columns in 1181 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pmhX/nostruct-align/1pmhX.t04.a2m.gz # 1pmhX.t04.a2m with 9 sequences, total weight= 5.13377 avg weight= 0.570419 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pmhX/info/1pmhX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pmhX/nostruct-align/1pmhX.t04.a2m.gz, have 284193 columns in 1182 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1qA/nostruct-align/1m1qA.t04.a2m.gz # 1m1qA.t04.a2m with 75 sequences, total weight= 61.5139 avg weight= 0.820185 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1qA/info/1m1qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m1qA/nostruct-align/1m1qA.t04.a2m.gz, have 284283 columns in 1183 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnxA/nostruct-align/1nnxA.t04.a2m.gz # 1nnxA.t04.a2m with 45 sequences, total weight= 14.7062 avg weight= 0.326806 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnxA/info/1nnxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nnxA/nostruct-align/1nnxA.t04.a2m.gz, have 284376 columns in 1184 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ouwA/nostruct-align/1ouwA.t04.a2m.gz # 1ouwA.t04.a2m with 336 sequences, total weight= 64.9392 avg weight= 0.193272 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30113 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ouwA/info/1ouwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ouwA/nostruct-align/1ouwA.t04.a2m.gz, have 284525 columns in 1185 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fm0D/nostruct-align/1fm0D.t04.a2m.gz # 1fm0D.t04.a2m with 195 sequences, total weight= 47.0795 avg weight= 0.241433 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30051 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fm0D/info/1fm0D.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fm0D/nostruct-align/1fm0D.t04.a2m.gz, have 284606 columns in 1186 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h99A/nostruct-align/1h99A.t04.a2m.gz # 1h99A.t04.a2m with 289 sequences, total weight= 289 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05581 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h99A/info/1h99A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h99A/nostruct-align/1h99A.t04.a2m.gz, have 284826 columns in 1187 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oksA/nostruct-align/1oksA.t04.a2m.gz # 1oksA.t04.a2m with 37 sequences, total weight= 2.97783 avg weight= 0.080482 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oksA/info/1oksA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oksA/nostruct-align/1oksA.t04.a2m.gz, have 284879 columns in 1188 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t04.a2m.gz # 1c9oA.t04.a2m with 662 sequences, total weight= 21.0964 avg weight= 0.0318676 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c9oA/info/1c9oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t04.a2m.gz, have 284945 columns in 1189 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pa1A/nostruct-align/1pa1A.t04.a2m.gz # 1pa1A.t04.a2m with 1588 sequences, total weight= 1588 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16118 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pa1A/info/1pa1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pa1A/nostruct-align/1pa1A.t04.a2m.gz, have 285247 columns in 1190 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hd2A/nostruct-align/1hd2A.t04.a2m.gz # 1hd2A.t04.a2m with 1306 sequences, total weight= 1306 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27391 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hd2A/info/1hd2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hd2A/nostruct-align/1hd2A.t04.a2m.gz, have 285408 columns in 1191 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iq6A/nostruct-align/1iq6A.t04.a2m.gz # 1iq6A.t04.a2m with 695 sequences, total weight= 695 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09856 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iq6A/info/1iq6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iq6A/nostruct-align/1iq6A.t04.a2m.gz, have 285540 columns in 1192 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ummA/nostruct-align/1ummA.t04.a2m.gz # 1ummA.t04.a2m with 1126 sequences, total weight= 1126 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01136 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ummA/info/1ummA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ummA/nostruct-align/1ummA.t04.a2m.gz, have 285689 columns in 1193 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t04.a2m.gz # 2arcA.t04.a2m with 19 sequences, total weight= 3.50167 avg weight= 0.184298 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2arcA/info/2arcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t04.a2m.gz, have 285850 columns in 1194 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f6bA/nostruct-align/1f6bA.t04.a2m.gz # 1f6bA.t04.a2m with 3008 sequences, total weight= 585.026 avg weight= 0.19449 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3417 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f6bA/info/1f6bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f6bA/nostruct-align/1f6bA.t04.a2m.gz, have 286026 columns in 1195 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t04.a2m.gz # 1nfp.t04.a2m with 765 sequences, total weight= 765 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10797 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nfp/info/1nfp.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t04.a2m.gz, have 286254 columns in 1196 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gppA/nostruct-align/1gppA.t04.a2m.gz # 1gppA.t04.a2m with 95 sequences, total weight= 30.5761 avg weight= 0.321854 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gppA/info/1gppA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gppA/nostruct-align/1gppA.t04.a2m.gz, have 286471 columns in 1197 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwxA/nostruct-align/1pwxA.t04.a2m.gz # 1pwxA.t04.a2m with 3027 sequences, total weight= 125.465 avg weight= 0.0414485 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33137 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwxA/info/1pwxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pwxA/nostruct-align/1pwxA.t04.a2m.gz, have 286723 columns in 1198 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1es9A/nostruct-align/1es9A.t04.a2m.gz # 1es9A.t04.a2m with 883 sequences, total weight= 883 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.803262 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1es9A/info/1es9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1es9A/nostruct-align/1es9A.t04.a2m.gz, have 286935 columns in 1199 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t04.a2m.gz # 1eca.t04.a2m with 1945 sequences, total weight= 869.59 avg weight= 0.44709 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32177 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eca/info/1eca.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t04.a2m.gz, have 287071 columns in 1200 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7lA/nostruct-align/1q7lA.t04.a2m.gz # 1q7lA.t04.a2m with 1302 sequences, total weight= 1302 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11708 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7lA/info/1q7lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q7lA/nostruct-align/1q7lA.t04.a2m.gz, have 287263 columns in 1201 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ja1A/nostruct-align/1ja1A.t04.a2m.gz # 1ja1A.t04.a2m with 2096 sequences, total weight= 2096 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00617 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ja1A/info/1ja1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1ja1A/nostruct-align/1ja1A.t04.a2m.gz, have 287879 columns in 1202 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6fA/nostruct-align/1h6fA.t04.a2m.gz # 1h6fA.t04.a2m with 363 sequences, total weight= 27.4018 avg weight= 0.075487 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6fA/info/1h6fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h6fA/nostruct-align/1h6fA.t04.a2m.gz, have 288063 columns in 1203 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1te2A/nostruct-align/1te2A.t04.a2m.gz # 1te2A.t04.a2m with 2977 sequences, total weight= 2977 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.841054 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1te2A/info/1te2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1te2A/nostruct-align/1te2A.t04.a2m.gz, have 288281 columns in 1204 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54F/nostruct-align/1v54F.t04.a2m.gz # 1v54F.t04.a2m with 43 sequences, total weight= 11.4341 avg weight= 0.265909 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54F/info/1v54F.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v54F/nostruct-align/1v54F.t04.a2m.gz, have 288379 columns in 1205 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t04.a2m.gz # 1yge.t04.a2m with 250 sequences, total weight= 35.9919 avg weight= 0.143968 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yge/info/1yge.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t04.a2m.gz, have 289218 columns in 1206 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1in6A/nostruct-align/1in6A.t04.a2m.gz # 1in6A.t04.a2m with 3733 sequences, total weight= 3733 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1441 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1in6A/info/1in6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1in6A/nostruct-align/1in6A.t04.a2m.gz, have 289518 columns in 1207 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u4bA/nostruct-align/1u4bA.t04.a2m.gz # 1u4bA.t04.a2m with 784 sequences, total weight= 784 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2314 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u4bA/info/1u4bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u4bA/nostruct-align/1u4bA.t04.a2m.gz, have 290098 columns in 1208 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uptB/nostruct-align/1uptB.t04.a2m.gz # 1uptB.t04.a2m with 12 sequences, total weight= 2.8441 avg weight= 0.237008 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uptB/info/1uptB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uptB/nostruct-align/1uptB.t04.a2m.gz, have 290156 columns in 1209 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p57A/nostruct-align/1p57A.t04.a2m.gz # 1p57A.t04.a2m with 9 sequences, total weight= 2.02666 avg weight= 0.225185 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p57A/info/1p57A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p57A/nostruct-align/1p57A.t04.a2m.gz, have 290266 columns in 1210 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlyA/nostruct-align/1vlyA.t04.a2m.gz # 1vlyA.t04.a2m with 505 sequences, total weight= 505 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21322 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlyA/info/1vlyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vlyA/nostruct-align/1vlyA.t04.a2m.gz, have 290589 columns in 1211 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u7iA/nostruct-align/1u7iA.t04.a2m.gz # 1u7iA.t04.a2m with 505 sequences, total weight= 505 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02202 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u7iA/info/1u7iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u7iA/nostruct-align/1u7iA.t04.a2m.gz, have 290723 columns in 1212 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o4vA/nostruct-align/1o4vA.t04.a2m.gz # 1o4vA.t04.a2m with 270 sequences, total weight= 18.9499 avg weight= 0.0701849 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o4vA/info/1o4vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o4vA/nostruct-align/1o4vA.t04.a2m.gz, have 290892 columns in 1213 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gq8A/nostruct-align/1gq8A.t04.a2m.gz # 1gq8A.t04.a2m with 412 sequences, total weight= 412 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25461 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gq8A/info/1gq8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gq8A/nostruct-align/1gq8A.t04.a2m.gz, have 291211 columns in 1214 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m2dA/nostruct-align/1m2dA.t04.a2m.gz # 1m2dA.t04.a2m with 123 sequences, total weight= 79.3302 avg weight= 0.644961 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3004 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m2dA/info/1m2dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m2dA/nostruct-align/1m2dA.t04.a2m.gz, have 291312 columns in 1215 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khiA/nostruct-align/1khiA.t04.a2m.gz # 1khiA.t04.a2m with 136 sequences, total weight= 12.9487 avg weight= 0.0952111 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khiA/info/1khiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1khiA/nostruct-align/1khiA.t04.a2m.gz, have 291459 columns in 1216 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqkH/nostruct-align/1mqkH.t04.a2m.gz # 1mqkH.t04.a2m with 3142 sequences, total weight= 7.76277 avg weight= 0.00247065 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqkH/info/1mqkH.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mqkH/nostruct-align/1mqkH.t04.a2m.gz, have 291582 columns in 1217 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m7gA/nostruct-align/1m7gA.t04.a2m.gz # 1m7gA.t04.a2m with 3058 sequences, total weight= 3058 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.984183 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m7gA/info/1m7gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m7gA/nostruct-align/1m7gA.t04.a2m.gz, have 291790 columns in 1218 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f46A/nostruct-align/1f46A.t04.a2m.gz # 1f46A.t04.a2m with 56 sequences, total weight= 16.155 avg weight= 0.288482 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f46A/info/1f46A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f46A/nostruct-align/1f46A.t04.a2m.gz, have 291929 columns in 1219 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gkmA/nostruct-align/1gkmA.t04.a2m.gz # 1gkmA.t04.a2m with 325 sequences, total weight= 25.0561 avg weight= 0.0770957 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gkmA/info/1gkmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gkmA/nostruct-align/1gkmA.t04.a2m.gz, have 292438 columns in 1220 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tu9A/nostruct-align/1tu9A.t04.a2m.gz # 1tu9A.t04.a2m with 833 sequences, total weight= 833 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24543 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tu9A/info/1tu9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tu9A/nostruct-align/1tu9A.t04.a2m.gz, have 292569 columns in 1221 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ru4A/nostruct-align/1ru4A.t04.a2m.gz # 1ru4A.t04.a2m with 890 sequences, total weight= 890 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.849727 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ru4A/info/1ru4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ru4A/nostruct-align/1ru4A.t04.a2m.gz, have 292969 columns in 1222 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m33A/nostruct-align/1m33A.t04.a2m.gz # 1m33A.t04.a2m with 3002 sequences, total weight= 3002 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.811954 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m33A/info/1m33A.stride-mixed.near-backbone-11 WARNING: skipping e, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1m/1m33A/nostruct-align/1m33A.t04.a2m.gz, have 293224 columns in 1223 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t4hA/nostruct-align/1t4hA.t04.a2m.gz # 1t4hA.t04.a2m with 3095 sequences, total weight= 38.9141 avg weight= 0.0125732 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30043 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t4hA/info/1t4hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t4hA/nostruct-align/1t4hA.t04.a2m.gz, have 293494 columns in 1224 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1igqA/nostruct-align/1igqA.t04.a2m.gz # 1igqA.t04.a2m with 8 sequences, total weight= 2.17682 avg weight= 0.272103 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1igqA/info/1igqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1igqA/nostruct-align/1igqA.t04.a2m.gz, have 293548 columns in 1225 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t04.a2m.gz # 1mtyD.t04.a2m with 251 sequences, total weight= 65.4906 avg weight= 0.260919 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyD/info/1mtyD.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t04.a2m.gz, have 294060 columns in 1226 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rxqA/nostruct-align/1rxqA.t04.a2m.gz # 1rxqA.t04.a2m with 81 sequences, total weight= 81 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02412 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rxqA/info/1rxqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rxqA/nostruct-align/1rxqA.t04.a2m.gz, have 294234 columns in 1227 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i24A/nostruct-align/1i24A.t04.a2m.gz # 1i24A.t04.a2m with 3018 sequences, total weight= 3018 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03847 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i24A/info/1i24A.stride-mixed.near-backbone-11 WARNING: skipping i, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1i/1i24A/nostruct-align/1i24A.t04.a2m.gz, have 294626 columns in 1228 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o98A/nostruct-align/1o98A.t04.a2m.gz # 1o98A.t04.a2m with 740 sequences, total weight= 740 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11713 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o98A/info/1o98A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o98A/nostruct-align/1o98A.t04.a2m.gz, have 295135 columns in 1229 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dk8A/nostruct-align/1dk8A.t04.a2m.gz # 1dk8A.t04.a2m with 435 sequences, total weight= 435 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25878 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dk8A/info/1dk8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dk8A/nostruct-align/1dk8A.t04.a2m.gz, have 295282 columns in 1230 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qnrA/nostruct-align/1qnrA.t04.a2m.gz # 1qnrA.t04.a2m with 2433 sequences, total weight= 2433 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.820875 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qnrA/info/1qnrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qnrA/nostruct-align/1qnrA.t04.a2m.gz, have 295626 columns in 1231 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eokA/nostruct-align/1eokA.t04.a2m.gz # 1eokA.t04.a2m with 253 sequences, total weight= 253 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28068 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eokA/info/1eokA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eokA/nostruct-align/1eokA.t04.a2m.gz, have 295908 columns in 1232 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uehA/nostruct-align/1uehA.t04.a2m.gz # 1uehA.t04.a2m with 336 sequences, total weight= 38.8302 avg weight= 0.115566 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30033 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uehA/info/1uehA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uehA/nostruct-align/1uehA.t04.a2m.gz, have 296122 columns in 1233 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t04.a2m.gz # 3pviA.t04.a2m with 9 sequences, total weight= 2.0813 avg weight= 0.231255 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3p/3pviA/info/3pviA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t04.a2m.gz, have 296278 columns in 1234 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sh8A/nostruct-align/1sh8A.t04.a2m.gz # 1sh8A.t04.a2m with 82 sequences, total weight= 82 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24743 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sh8A/info/1sh8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sh8A/nostruct-align/1sh8A.t04.a2m.gz, have 296431 columns in 1235 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6kA/nostruct-align/1m6kA.t04.a2m.gz # 1m6kA.t04.a2m with 2201 sequences, total weight= 2201 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10298 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6kA/info/1m6kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m6kA/nostruct-align/1m6kA.t04.a2m.gz, have 296681 columns in 1236 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tr0A/nostruct-align/1tr0A.t04.a2m.gz # 1tr0A.t04.a2m with 105 sequences, total weight= 105 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17075 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tr0A/info/1tr0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tr0A/nostruct-align/1tr0A.t04.a2m.gz, have 296787 columns in 1237 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t04.a2m.gz # 1bg6.t04.a2m with 2942 sequences, total weight= 2942 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.910091 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bg6/info/1bg6.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t04.a2m.gz, have 297136 columns in 1238 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1idpA/nostruct-align/1idpA.t04.a2m.gz # 1idpA.t04.a2m with 27 sequences, total weight= 4.36664 avg weight= 0.161727 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1idpA/info/1idpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1idpA/nostruct-align/1idpA.t04.a2m.gz, have 297283 columns in 1239 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n7hA/nostruct-align/1n7hA.t04.a2m.gz # 1n7hA.t04.a2m with 3010 sequences, total weight= 3010 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08728 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n7hA/info/1n7hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n7hA/nostruct-align/1n7hA.t04.a2m.gz, have 297614 columns in 1240 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2zA/nostruct-align/1r2zA.t04.a2m.gz # 1r2zA.t04.a2m with 265 sequences, total weight= 50.6059 avg weight= 0.190966 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30048 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2zA/info/1r2zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r2zA/nostruct-align/1r2zA.t04.a2m.gz, have 297887 columns in 1241 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uq5A/nostruct-align/1uq5A.t04.a2m.gz # 1uq5A.t04.a2m with 317 sequences, total weight= 114.038 avg weight= 0.35974 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30342 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uq5A/info/1uq5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uq5A/nostruct-align/1uq5A.t04.a2m.gz, have 298150 columns in 1242 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwwA/nostruct-align/1nwwA.t04.a2m.gz # 1nwwA.t04.a2m with 295 sequences, total weight= 295 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.91067 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwwA/info/1nwwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nwwA/nostruct-align/1nwwA.t04.a2m.gz, have 298295 columns in 1243 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxjA/nostruct-align/1oxjA.t04.a2m.gz # 1oxjA.t04.a2m with 26 sequences, total weight= 8.77224 avg weight= 0.337394 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxjA/info/1oxjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oxjA/nostruct-align/1oxjA.t04.a2m.gz, have 298465 columns in 1244 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t04.a2m.gz # 2bbkH.t04.a2m with 2950 sequences, total weight= 2950 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.882905 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bbkH/info/2bbkH.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t04.a2m.gz, have 298820 columns in 1245 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i6lA/nostruct-align/1i6lA.t04.a2m.gz # 1i6lA.t04.a2m with 668 sequences, total weight= 668 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27534 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i6lA/info/1i6lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i6lA/nostruct-align/1i6lA.t04.a2m.gz, have 299146 columns in 1246 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i52A/nostruct-align/1i52A.t04.a2m.gz # 1i52A.t04.a2m with 2407 sequences, total weight= 2407 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0282 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i52A/info/1i52A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i52A/nostruct-align/1i52A.t04.a2m.gz, have 299371 columns in 1247 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t04.a2m.gz # 2tgi.t04.a2m with 684 sequences, total weight= 48.3307 avg weight= 0.070659 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30107 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tgi/info/2tgi.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t04.a2m.gz, have 299483 columns in 1248 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l3kA/nostruct-align/1l3kA.t04.a2m.gz # 1l3kA.t04.a2m with 3790 sequences, total weight= 3790 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14492 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l3kA/info/1l3kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l3kA/nostruct-align/1l3kA.t04.a2m.gz, have 299646 columns in 1249 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qv1A/nostruct-align/1qv1A.t04.a2m.gz # 1qv1A.t04.a2m with 1508 sequences, total weight= 1508 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15163 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qv1A/info/1qv1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qv1A/nostruct-align/1qv1A.t04.a2m.gz, have 299833 columns in 1250 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k77A/nostruct-align/1k77A.t04.a2m.gz # 1k77A.t04.a2m with 921 sequences, total weight= 921 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.927063 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k77A/info/1k77A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k77A/nostruct-align/1k77A.t04.a2m.gz, have 300093 columns in 1251 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rzhM/nostruct-align/1rzhM.t04.a2m.gz # 1rzhM.t04.a2m with 643 sequences, total weight= 15.6083 avg weight= 0.0242742 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rzhM/info/1rzhM.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rzhM/nostruct-align/1rzhM.t04.a2m.gz, have 300394 columns in 1252 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iu8A/nostruct-align/1iu8A.t04.a2m.gz # 1iu8A.t04.a2m with 105 sequences, total weight= 54.4651 avg weight= 0.518716 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iu8A/info/1iu8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iu8A/nostruct-align/1iu8A.t04.a2m.gz, have 300600 columns in 1253 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jh6A/nostruct-align/1jh6A.t04.a2m.gz # 1jh6A.t04.a2m with 104 sequences, total weight= 104 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0954 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jh6A/info/1jh6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jh6A/nostruct-align/1jh6A.t04.a2m.gz, have 300781 columns in 1254 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jl0A/nostruct-align/1jl0A.t04.a2m.gz # 1jl0A.t04.a2m with 115 sequences, total weight= 15.3596 avg weight= 0.133561 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jl0A/info/1jl0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jl0A/nostruct-align/1jl0A.t04.a2m.gz, have 301091 columns in 1255 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t04.a2m.gz # 1a92A.t04.a2m with 136 sequences, total weight= 3.08231 avg weight= 0.0226641 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a92A/info/1a92A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t04.a2m.gz, have 301141 columns in 1256 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6eX/nostruct-align/1t6eX.t04.a2m.gz # 1t6eX.t04.a2m with 1128 sequences, total weight= 1128 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21401 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6eX/info/1t6eX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t6eX/nostruct-align/1t6eX.t04.a2m.gz, have 301503 columns in 1257 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q8dA/nostruct-align/1q8dA.t04.a2m.gz # 1q8dA.t04.a2m with 53 sequences, total weight= 4.578 avg weight= 0.0863774 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q8dA/info/1q8dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q8dA/nostruct-align/1q8dA.t04.a2m.gz, have 301603 columns in 1258 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o08A/nostruct-align/1o08A.t04.a2m.gz # 1o08A.t04.a2m with 2823 sequences, total weight= 2823 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.820677 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o08A/info/1o08A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o08A/nostruct-align/1o08A.t04.a2m.gz, have 301824 columns in 1259 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dbxA/nostruct-align/1dbxA.t04.a2m.gz # 1dbxA.t04.a2m with 364 sequences, total weight= 364 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24801 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dbxA/info/1dbxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dbxA/nostruct-align/1dbxA.t04.a2m.gz, have 301976 columns in 1260 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jbeA/nostruct-align/1jbeA.t04.a2m.gz # 1jbeA.t04.a2m with 3222 sequences, total weight= 159.431 avg weight= 0.0494821 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.34613 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jbeA/info/1jbeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jbeA/nostruct-align/1jbeA.t04.a2m.gz, have 302102 columns in 1261 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jubA/nostruct-align/1jubA.t04.a2m.gz # 1jubA.t04.a2m with 2857 sequences, total weight= 2857 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.94778 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jubA/info/1jubA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jubA/nostruct-align/1jubA.t04.a2m.gz, have 302413 columns in 1262 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oflA/nostruct-align/1oflA.t04.a2m.gz # 1oflA.t04.a2m with 544 sequences, total weight= 544 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03383 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oflA/info/1oflA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oflA/nostruct-align/1oflA.t04.a2m.gz, have 302894 columns in 1263 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhnA/nostruct-align/1vhnA.t04.a2m.gz # 1vhnA.t04.a2m with 2564 sequences, total weight= 2564 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.945117 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhnA/info/1vhnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhnA/nostruct-align/1vhnA.t04.a2m.gz, have 303199 columns in 1264 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lyqA/nostruct-align/1lyqA.t04.a2m.gz # 1lyqA.t04.a2m with 73 sequences, total weight= 23.6194 avg weight= 0.323554 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lyqA/info/1lyqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lyqA/nostruct-align/1lyqA.t04.a2m.gz, have 303300 columns in 1265 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r29A/nostruct-align/1r29A.t04.a2m.gz # 1r29A.t04.a2m with 1815 sequences, total weight= 1815 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10111 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r29A/info/1r29A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r29A/nostruct-align/1r29A.t04.a2m.gz, have 303422 columns in 1266 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwjA/nostruct-align/1rwjA.t04.a2m.gz # 1rwjA.t04.a2m with 50 sequences, total weight= 9.9911 avg weight= 0.199822 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwjA/info/1rwjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rwjA/nostruct-align/1rwjA.t04.a2m.gz, have 303503 columns in 1267 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dmgA/nostruct-align/1dmgA.t04.a2m.gz # 1dmgA.t04.a2m with 280 sequences, total weight= 75.3105 avg weight= 0.268966 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dmgA/info/1dmgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dmgA/nostruct-align/1dmgA.t04.a2m.gz, have 303675 columns in 1268 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ofzA/nostruct-align/1ofzA.t04.a2m.gz # 1ofzA.t04.a2m with 35 sequences, total weight= 35 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08812 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ofzA/info/1ofzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ofzA/nostruct-align/1ofzA.t04.a2m.gz, have 303987 columns in 1269 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5uA/nostruct-align/1s5uA.t04.a2m.gz # 1s5uA.t04.a2m with 811 sequences, total weight= 811 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.961124 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5uA/info/1s5uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s5uA/nostruct-align/1s5uA.t04.a2m.gz, have 304116 columns in 1270 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gs9A/nostruct-align/1gs9A.t04.a2m.gz # 1gs9A.t04.a2m with 148 sequences, total weight= 22.0749 avg weight= 0.149155 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gs9A/info/1gs9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gs9A/nostruct-align/1gs9A.t04.a2m.gz, have 304260 columns in 1271 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pg6A/nostruct-align/1pg6A.t04.a2m.gz # 1pg6A.t04.a2m with 123 sequences, total weight= 102.937 avg weight= 0.836884 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30037 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pg6A/info/1pg6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pg6A/nostruct-align/1pg6A.t04.a2m.gz, have 304476 columns in 1272 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hqsA/nostruct-align/1hqsA.t04.a2m.gz # 1hqsA.t04.a2m with 874 sequences, total weight= 54.7167 avg weight= 0.0626049 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3006 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hqsA/info/1hqsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hqsA/nostruct-align/1hqsA.t04.a2m.gz, have 304899 columns in 1273 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ny1A/nostruct-align/1ny1A.t04.a2m.gz # 1ny1A.t04.a2m with 779 sequences, total weight= 779 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.949327 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ny1A/info/1ny1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1ny1A/nostruct-align/1ny1A.t04.a2m.gz, have 305134 columns in 1274 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ntyA/nostruct-align/1ntyA.t04.a2m.gz # 1ntyA.t04.a2m with 1108 sequences, total weight= 1108 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06422 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ntyA/info/1ntyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1ntyA/nostruct-align/1ntyA.t04.a2m.gz, have 305439 columns in 1275 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o1yA/nostruct-align/1o1yA.t04.a2m.gz # 1o1yA.t04.a2m with 2496 sequences, total weight= 2496 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.946597 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o1yA/info/1o1yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o1yA/nostruct-align/1o1yA.t04.a2m.gz, have 305669 columns in 1276 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t04.a2m.gz # 1hyp.t04.a2m with 117 sequences, total weight= 6.1323 avg weight= 0.0524128 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyp/info/1hyp.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t04.a2m.gz, have 305744 columns in 1277 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1izcA/nostruct-align/1izcA.t04.a2m.gz # 1izcA.t04.a2m with 1302 sequences, total weight= 1302 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15653 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1izcA/info/1izcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1izcA/nostruct-align/1izcA.t04.a2m.gz, have 306043 columns in 1278 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k8uA/nostruct-align/1k8uA.t04.a2m.gz # 1k8uA.t04.a2m with 213 sequences, total weight= 24.9175 avg weight= 0.116983 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k8uA/info/1k8uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k8uA/nostruct-align/1k8uA.t04.a2m.gz, have 306132 columns in 1279 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ig0A/nostruct-align/1ig0A.t04.a2m.gz # 1ig0A.t04.a2m with 104 sequences, total weight= 104 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29229 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ig0A/info/1ig0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ig0A/nostruct-align/1ig0A.t04.a2m.gz, have 306449 columns in 1280 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1ddwA/nostruct-align/1ddwA.t04.a2m.gz # 1ddwA.t04.a2m with 116 sequences, total weight= 8.38084 avg weight= 0.0722486 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1ddwA/info/1ddwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1ddwA/nostruct-align/1ddwA.t04.a2m.gz, have 306560 columns in 1281 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t04.a2m.gz # 1arb.t04.a2m with 871 sequences, total weight= 871 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21265 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1arb/info/1arb.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t04.a2m.gz, have 306823 columns in 1282 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fi2A/nostruct-align/1fi2A.t04.a2m.gz # 1fi2A.t04.a2m with 1161 sequences, total weight= 1161 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07812 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fi2A/info/1fi2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fi2A/nostruct-align/1fi2A.t04.a2m.gz, have 307024 columns in 1283 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyaA/nostruct-align/1jyaA.t04.a2m.gz # 1jyaA.t04.a2m with 19 sequences, total weight= 6.43778 avg weight= 0.33883 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyaA/info/1jyaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jyaA/nostruct-align/1jyaA.t04.a2m.gz, have 307141 columns in 1284 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dljA/nostruct-align/1dljA.t04.a2m.gz # 1dljA.t04.a2m with 2895 sequences, total weight= 2895 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970709 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dljA/info/1dljA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dljA/nostruct-align/1dljA.t04.a2m.gz, have 307543 columns in 1285 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i19A/nostruct-align/1i19A.t04.a2m.gz # 1i19A.t04.a2m with 1214 sequences, total weight= 1214 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.879178 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i19A/info/1i19A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i19A/nostruct-align/1i19A.t04.a2m.gz, have 308084 columns in 1286 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vmeA/nostruct-align/1vmeA.t04.a2m.gz # 1vmeA.t04.a2m with 2996 sequences, total weight= 2996 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.885544 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vmeA/info/1vmeA.stride-mixed.near-backbone-11 WARNING: skipping f, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1v/1vmeA/nostruct-align/1vmeA.t04.a2m.gz, have 308485 columns in 1287 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1go3E/nostruct-align/1go3E.t04.a2m.gz # 1go3E.t04.a2m with 1055 sequences, total weight= 1055 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2157 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1go3E/info/1go3E.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1go3E/nostruct-align/1go3E.t04.a2m.gz, have 308662 columns in 1288 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fo8A/nostruct-align/1fo8A.t04.a2m.gz # 1fo8A.t04.a2m with 1939 sequences, total weight= 1939 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.899992 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fo8A/info/1fo8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fo8A/nostruct-align/1fo8A.t04.a2m.gz, have 308992 columns in 1289 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t04.a2m.gz # 1bdo.t04.a2m with 516 sequences, total weight= 28.9565 avg weight= 0.0561172 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bdo/info/1bdo.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t04.a2m.gz, have 309072 columns in 1290 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ukkA/nostruct-align/1ukkA.t04.a2m.gz # 1ukkA.t04.a2m with 333 sequences, total weight= 333 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13459 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ukkA/info/1ukkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ukkA/nostruct-align/1ukkA.t04.a2m.gz, have 309213 columns in 1291 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m15A/nostruct-align/1m15A.t04.a2m.gz # 1m15A.t04.a2m with 281 sequences, total weight= 19.0762 avg weight= 0.0678869 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m15A/info/1m15A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m15A/nostruct-align/1m15A.t04.a2m.gz, have 309569 columns in 1292 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t04.a2m.gz # 1bkrA.t04.a2m with 1079 sequences, total weight= 280.966 avg weight= 0.260395 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32368 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bkrA/info/1bkrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t04.a2m.gz, have 309677 columns in 1293 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t04.a2m.gz # 1qlwA.t04.a2m with 3010 sequences, total weight= 3010 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.807584 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qlwA/info/1qlwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t04.a2m.gz, have 309995 columns in 1294 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6cA/nostruct-align/1t6cA.t04.a2m.gz # 1t6cA.t04.a2m with 2483 sequences, total weight= 2483 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12596 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6cA/info/1t6cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t6cA/nostruct-align/1t6cA.t04.a2m.gz, have 310301 columns in 1295 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7nA/nostruct-align/1o7nA.t04.a2m.gz # 1o7nA.t04.a2m with 1037 sequences, total weight= 1037 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.997048 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7nA/info/1o7nA.stride-mixed.near-backbone-11 WARNING: skipping h, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1o/1o7nA/nostruct-align/1o7nA.t04.a2m.gz, have 310748 columns in 1296 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t04.a2m.gz # 1bx7.t04.a2m with 7 sequences, total weight= 2.32342 avg weight= 0.331917 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bx7/info/1bx7.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t04.a2m.gz, have 310799 columns in 1297 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j5xA/nostruct-align/1j5xA.t04.a2m.gz # 1j5xA.t04.a2m with 1562 sequences, total weight= 1562 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09819 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j5xA/info/1j5xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j5xA/nostruct-align/1j5xA.t04.a2m.gz, have 311118 columns in 1298 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t04.a2m.gz # 1elkA.t04.a2m with 245 sequences, total weight= 106.233 avg weight= 0.433603 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3019 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1elkA/info/1elkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t04.a2m.gz, have 311271 columns in 1299 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t04.a2m.gz # 1ak0.t04.a2m with 69 sequences, total weight= 69 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2949 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ak0/info/1ak0.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t04.a2m.gz, have 311535 columns in 1300 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t04.a2m.gz # 256bA.t04.a2m with 19 sequences, total weight= 5.58651 avg weight= 0.294027 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/25/256bA/info/256bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t04.a2m.gz, have 311641 columns in 1301 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r8sA/nostruct-align/1r8sA.t04.a2m.gz # 1r8sA.t04.a2m with 3031 sequences, total weight= 190.511 avg weight= 0.0628543 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.34211 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r8sA/info/1r8sA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r8sA/nostruct-align/1r8sA.t04.a2m.gz, have 311801 columns in 1302 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q2hA/nostruct-align/1q2hA.t04.a2m.gz # 1q2hA.t04.a2m with 25 sequences, total weight= 4.85683 avg weight= 0.194273 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q2hA/info/1q2hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q2hA/nostruct-align/1q2hA.t04.a2m.gz, have 311864 columns in 1303 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t04.a2m.gz # 1edg.t04.a2m with 2058 sequences, total weight= 2058 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.867179 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1edg/info/1edg.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t04.a2m.gz, have 312244 columns in 1304 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rgxA/nostruct-align/1rgxA.t04.a2m.gz # 1rgxA.t04.a2m with 20 sequences, total weight= 3.40951 avg weight= 0.170475 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rgxA/info/1rgxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rgxA/nostruct-align/1rgxA.t04.a2m.gz, have 312333 columns in 1305 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t04.a2m.gz # 1cnzA.t04.a2m with 870 sequences, total weight= 43.1702 avg weight= 0.049621 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30029 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cnzA/info/1cnzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t04.a2m.gz, have 312696 columns in 1306 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k4nA/nostruct-align/1k4nA.t04.a2m.gz # 1k4nA.t04.a2m with 33 sequences, total weight= 7.93412 avg weight= 0.240428 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k4nA/info/1k4nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k4nA/nostruct-align/1k4nA.t04.a2m.gz, have 312879 columns in 1307 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxrA/nostruct-align/1gxrA.t04.a2m.gz # 1gxrA.t04.a2m with 3467 sequences, total weight= 3467 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.938561 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxrA/info/1gxrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gxrA/nostruct-align/1gxrA.t04.a2m.gz, have 313214 columns in 1308 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qv9A/nostruct-align/1qv9A.t04.a2m.gz # 1qv9A.t04.a2m with 13 sequences, total weight= 3.3608 avg weight= 0.258523 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qv9A/info/1qv9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qv9A/nostruct-align/1qv9A.t04.a2m.gz, have 313496 columns in 1309 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t04.a2m.gz # 2dpmA.t04.a2m with 222 sequences, total weight= 222 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16882 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2d/2dpmA/info/2dpmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t04.a2m.gz, have 313754 columns in 1310 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7nB/nostruct-align/1o7nB.t04.a2m.gz # 1o7nB.t04.a2m with 218 sequences, total weight= 218 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27087 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7nB/info/1o7nB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o7nB/nostruct-align/1o7nB.t04.a2m.gz, have 313947 columns in 1311 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e42A/nostruct-align/1e42A.t04.a2m.gz # 1e42A.t04.a2m with 42 sequences, total weight= 7.48213 avg weight= 0.178146 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e42A/info/1e42A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e42A/nostruct-align/1e42A.t04.a2m.gz, have 314180 columns in 1312 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t56A/nostruct-align/1t56A.t04.a2m.gz # 1t56A.t04.a2m with 2886 sequences, total weight= 2886 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.789164 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t56A/info/1t56A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t56A/nostruct-align/1t56A.t04.a2m.gz, have 314373 columns in 1313 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwrA/nostruct-align/1rwrA.t04.a2m.gz # 1rwrA.t04.a2m with 121 sequences, total weight= 21.2131 avg weight= 0.175315 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwrA/info/1rwrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rwrA/nostruct-align/1rwrA.t04.a2m.gz, have 314670 columns in 1314 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqjA/nostruct-align/1oqjA.t04.a2m.gz # 1oqjA.t04.a2m with 87 sequences, total weight= 11.0386 avg weight= 0.12688 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqjA/info/1oqjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oqjA/nostruct-align/1oqjA.t04.a2m.gz, have 314760 columns in 1315 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lmiA/nostruct-align/1lmiA.t04.a2m.gz # 1lmiA.t04.a2m with 5 sequences, total weight= 3.36932 avg weight= 0.673864 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lmiA/info/1lmiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lmiA/nostruct-align/1lmiA.t04.a2m.gz, have 314891 columns in 1316 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fyeA/nostruct-align/1fyeA.t04.a2m.gz # 1fyeA.t04.a2m with 224 sequences, total weight= 224 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11636 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fyeA/info/1fyeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fyeA/nostruct-align/1fyeA.t04.a2m.gz, have 315111 columns in 1317 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gp0A/nostruct-align/1gp0A.t04.a2m.gz # 1gp0A.t04.a2m with 430 sequences, total weight= 81.422 avg weight= 0.189354 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30446 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gp0A/info/1gp0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gp0A/nostruct-align/1gp0A.t04.a2m.gz, have 315244 columns in 1318 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b5pA/nostruct-align/1b5pA.t04.a2m.gz # 1b5pA.t04.a2m with 3002 sequences, total weight= 3002 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01293 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b5pA/info/1b5pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b5pA/nostruct-align/1b5pA.t04.a2m.gz, have 315626 columns in 1319 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t04.a2m.gz # 1a73A.t04.a2m with 23 sequences, total weight= 13.6942 avg weight= 0.595401 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a73A/info/1a73A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t04.a2m.gz, have 315788 columns in 1320 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1no5A/nostruct-align/1no5A.t04.a2m.gz # 1no5A.t04.a2m with 382 sequences, total weight= 382 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04364 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1no5A/info/1no5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1no5A/nostruct-align/1no5A.t04.a2m.gz, have 315888 columns in 1321 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hfuA/nostruct-align/1hfuA.t04.a2m.gz # 1hfuA.t04.a2m with 1085 sequences, total weight= 1085 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14669 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hfuA/info/1hfuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hfuA/nostruct-align/1hfuA.t04.a2m.gz, have 316388 columns in 1322 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t04.a2m.gz # 1fltX.t04.a2m with 76 sequences, total weight= 12.9756 avg weight= 0.170731 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fltX/info/1fltX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t04.a2m.gz, have 316483 columns in 1323 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxxK/nostruct-align/1oxxK.t04.a2m.gz # 1oxxK.t04.a2m with 3261 sequences, total weight= 91.8049 avg weight= 0.0281524 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3234 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxxK/info/1oxxK.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oxxK/nostruct-align/1oxxK.t04.a2m.gz, have 316835 columns in 1324 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9yA/nostruct-align/1f9yA.t04.a2m.gz # 1f9yA.t04.a2m with 229 sequences, total weight= 30.5529 avg weight= 0.133419 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9yA/info/1f9yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f9yA/nostruct-align/1f9yA.t04.a2m.gz, have 316993 columns in 1325 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t04.a2m.gz # 1a6m.t04.a2m with 1895 sequences, total weight= 669.196 avg weight= 0.353138 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32599 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a6m/info/1a6m.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t04.a2m.gz, have 317144 columns in 1326 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t04.a2m.gz # 3ezmA.t04.a2m with 6 sequences, total weight= 3.5567 avg weight= 0.592783 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3e/3ezmA/info/3ezmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t04.a2m.gz, have 317245 columns in 1327 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fl0A/nostruct-align/1fl0A.t04.a2m.gz # 1fl0A.t04.a2m with 481 sequences, total weight= 88.3911 avg weight= 0.183765 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30197 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fl0A/info/1fl0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fl0A/nostruct-align/1fl0A.t04.a2m.gz, have 317409 columns in 1328 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lycA/nostruct-align/1lycA.t04.a2m.gz # 1lycA.t04.a2m with 1315 sequences, total weight= 105.679 avg weight= 0.0803639 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30391 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lycA/info/1lycA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lycA/nostruct-align/1lycA.t04.a2m.gz, have 317745 columns in 1329 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h05A/nostruct-align/1h05A.t04.a2m.gz # 1h05A.t04.a2m with 176 sequences, total weight= 9.04307 avg weight= 0.0513811 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h05A/info/1h05A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h05A/nostruct-align/1h05A.t04.a2m.gz, have 317883 columns in 1330 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p9hA/nostruct-align/1p9hA.t04.a2m.gz # 1p9hA.t04.a2m with 447 sequences, total weight= 244.243 avg weight= 0.546405 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30134 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p9hA/info/1p9hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p9hA/nostruct-align/1p9hA.t04.a2m.gz, have 318062 columns in 1331 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ewfA/nostruct-align/1ewfA.t04.a2m.gz # 1ewfA.t04.a2m with 141 sequences, total weight= 141 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20201 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ewfA/info/1ewfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ewfA/nostruct-align/1ewfA.t04.a2m.gz, have 318518 columns in 1332 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6wA/nostruct-align/1r6wA.t04.a2m.gz # 1r6wA.t04.a2m with 1081 sequences, total weight= 1081 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21336 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6wA/info/1r6wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r6wA/nostruct-align/1r6wA.t04.a2m.gz, have 318839 columns in 1333 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t04.a2m.gz # 1kptA.t04.a2m with 9 sequences, total weight= 3.83492 avg weight= 0.426103 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kptA/info/1kptA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t04.a2m.gz, have 318944 columns in 1334 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0lA/nostruct-align/1i0lA.t04.a2m.gz # 1i0lA.t04.a2m with 2302 sequences, total weight= 2302 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0097 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0lA/info/1i0lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i0lA/nostruct-align/1i0lA.t04.a2m.gz, have 319136 columns in 1335 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mwqA/nostruct-align/1mwqA.t04.a2m.gz # 1mwqA.t04.a2m with 132 sequences, total weight= 62.9774 avg weight= 0.477102 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mwqA/info/1mwqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mwqA/nostruct-align/1mwqA.t04.a2m.gz, have 319236 columns in 1336 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nvmB/nostruct-align/1nvmB.t04.a2m.gz # 1nvmB.t04.a2m with 2086 sequences, total weight= 1595.13 avg weight= 0.764683 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3073 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nvmB/info/1nvmB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nvmB/nostruct-align/1nvmB.t04.a2m.gz, have 319548 columns in 1337 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t04.a2m.gz # 1nox.t04.a2m with 793 sequences, total weight= 793 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00002 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nox/info/1nox.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t04.a2m.gz, have 319748 columns in 1338 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1onwA/nostruct-align/1onwA.t04.a2m.gz # 1onwA.t04.a2m with 1899 sequences, total weight= 1899 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.905602 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1onwA/info/1onwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1onwA/nostruct-align/1onwA.t04.a2m.gz, have 320124 columns in 1339 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smxA/nostruct-align/1smxA.t04.a2m.gz # 1smxA.t04.a2m with 220 sequences, total weight= 9.20773 avg weight= 0.0418533 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smxA/info/1smxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1smxA/nostruct-align/1smxA.t04.a2m.gz, have 320211 columns in 1340 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pqhA/nostruct-align/1pqhA.t04.a2m.gz # 1pqhA.t04.a2m with 102 sequences, total weight= 6.90165 avg weight= 0.0676632 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pqhA/info/1pqhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pqhA/nostruct-align/1pqhA.t04.a2m.gz, have 320330 columns in 1341 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfuA/nostruct-align/1jfuA.t04.a2m.gz # 1jfuA.t04.a2m with 3331 sequences, total weight= 3331 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.947354 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfuA/info/1jfuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jfuA/nostruct-align/1jfuA.t04.a2m.gz, have 320506 columns in 1342 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijqA/nostruct-align/1ijqA.t04.a2m.gz # 1ijqA.t04.a2m with 2463 sequences, total weight= 2463 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.869766 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijqA/info/1ijqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ijqA/nostruct-align/1ijqA.t04.a2m.gz, have 320814 columns in 1343 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1snyA/nostruct-align/1snyA.t04.a2m.gz # 1snyA.t04.a2m with 3036 sequences, total weight= 168.113 avg weight= 0.0553733 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33072 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1snyA/info/1snyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1snyA/nostruct-align/1snyA.t04.a2m.gz, have 321062 columns in 1344 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fs1B/nostruct-align/1fs1B.t04.a2m.gz # 1fs1B.t04.a2m with 208 sequences, total weight= 38.1112 avg weight= 0.183227 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fs1B/info/1fs1B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fs1B/nostruct-align/1fs1B.t04.a2m.gz, have 321178 columns in 1345 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jl1A/nostruct-align/1jl1A.t04.a2m.gz # 1jl1A.t04.a2m with 2227 sequences, total weight= 2227 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28499 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jl1A/info/1jl1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jl1A/nostruct-align/1jl1A.t04.a2m.gz, have 321330 columns in 1346 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jpzA/nostruct-align/1jpzA.t04.a2m.gz # 1jpzA.t04.a2m with 3018 sequences, total weight= 3018 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1657 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jpzA/info/1jpzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jpzA/nostruct-align/1jpzA.t04.a2m.gz, have 321786 columns in 1347 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x6oA/nostruct-align/1x6oA.t04.a2m.gz # 1x6oA.t04.a2m with 149 sequences, total weight= 15.1798 avg weight= 0.101878 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x6oA/info/1x6oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x6oA/nostruct-align/1x6oA.t04.a2m.gz, have 321929 columns in 1348 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t04.a2m.gz # 2tnfA.t04.a2m with 280 sequences, total weight= 35.0098 avg weight= 0.125035 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tnfA/info/2tnfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t04.a2m.gz, have 322077 columns in 1349 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4xG/nostruct-align/1d4xG.t04.a2m.gz # 1d4xG.t04.a2m with 699 sequences, total weight= 699 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15334 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4xG/info/1d4xG.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d4xG/nostruct-align/1d4xG.t04.a2m.gz, have 322201 columns in 1350 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hm9A/nostruct-align/1hm9A.t04.a2m.gz # 1hm9A.t04.a2m with 2988 sequences, total weight= 2988 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0971 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hm9A/info/1hm9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hm9A/nostruct-align/1hm9A.t04.a2m.gz, have 322659 columns in 1351 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orrA/nostruct-align/1orrA.t04.a2m.gz # 1orrA.t04.a2m with 3011 sequences, total weight= 3011 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09296 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orrA/info/1orrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1orrA/nostruct-align/1orrA.t04.a2m.gz, have 322997 columns in 1352 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqnA/nostruct-align/1gqnA.t04.a2m.gz # 1gqnA.t04.a2m with 109 sequences, total weight= 109 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29145 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqnA/info/1gqnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gqnA/nostruct-align/1gqnA.t04.a2m.gz, have 323249 columns in 1353 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rtqA/nostruct-align/1rtqA.t04.a2m.gz # 1rtqA.t04.a2m with 1805 sequences, total weight= 1805 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.873392 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rtqA/info/1rtqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rtqA/nostruct-align/1rtqA.t04.a2m.gz, have 323540 columns in 1354 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t04.a2m.gz # 1cy5A.t04.a2m with 32 sequences, total weight= 2.5958 avg weight= 0.0811186 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cy5A/info/1cy5A.stride-mixed.near-backbone-11 WARNING: skipping f, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t04.a2m.gz, have 323632 columns in 1355 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t04.a2m.gz # 1azo.t04.a2m with 45 sequences, total weight= 19.3279 avg weight= 0.429509 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1azo/info/1azo.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t04.a2m.gz, have 323846 columns in 1356 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4lA/nostruct-align/1m4lA.t04.a2m.gz # 1m4lA.t04.a2m with 598 sequences, total weight= 598 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0871 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4lA/info/1m4lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m4lA/nostruct-align/1m4lA.t04.a2m.gz, have 324153 columns in 1357 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2mA/nostruct-align/1r2mA.t04.a2m.gz # 1r2mA.t04.a2m with 31 sequences, total weight= 4.0869 avg weight= 0.131835 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2mA/info/1r2mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r2mA/nostruct-align/1r2mA.t04.a2m.gz, have 324223 columns in 1358 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6sA/nostruct-align/1g6sA.t04.a2m.gz # 1g6sA.t04.a2m with 599 sequences, total weight= 78.6726 avg weight= 0.13134 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30213 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6sA/info/1g6sA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g6sA/nostruct-align/1g6sA.t04.a2m.gz, have 324650 columns in 1359 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j79A/nostruct-align/1j79A.t04.a2m.gz # 1j79A.t04.a2m with 876 sequences, total weight= 876 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.995969 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j79A/info/1j79A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j79A/nostruct-align/1j79A.t04.a2m.gz, have 324993 columns in 1360 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gu7A/nostruct-align/1gu7A.t04.a2m.gz # 1gu7A.t04.a2m with 3031 sequences, total weight= 3031 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2076 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gu7A/info/1gu7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gu7A/nostruct-align/1gu7A.t04.a2m.gz, have 325357 columns in 1361 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryaA/nostruct-align/1ryaA.t04.a2m.gz # 1ryaA.t04.a2m with 2277 sequences, total weight= 2277 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.801691 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryaA/info/1ryaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ryaA/nostruct-align/1ryaA.t04.a2m.gz, have 325517 columns in 1362 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rkqA/nostruct-align/1rkqA.t04.a2m.gz # 1rkqA.t04.a2m with 2986 sequences, total weight= 2986 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.986379 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rkqA/info/1rkqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rkqA/nostruct-align/1rkqA.t04.a2m.gz, have 325788 columns in 1363 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e29A/nostruct-align/1e29A.t04.a2m.gz # 1e29A.t04.a2m with 433 sequences, total weight= 188.178 avg weight= 0.43459 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30429 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e29A/info/1e29A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e29A/nostruct-align/1e29A.t04.a2m.gz, have 325923 columns in 1364 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3iA/nostruct-align/1k3iA.t04.a2m.gz # 1k3iA.t04.a2m with 1805 sequences, total weight= 1805 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.987489 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3iA/info/1k3iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k3iA/nostruct-align/1k3iA.t04.a2m.gz, have 326574 columns in 1365 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2nA/nostruct-align/1g2nA.t04.a2m.gz # 1g2nA.t04.a2m with 2005 sequences, total weight= 2005 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.875728 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2nA/info/1g2nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g2nA/nostruct-align/1g2nA.t04.a2m.gz, have 326820 columns in 1366 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t04.a2m.gz # 1qddA.t04.a2m with 2226 sequences, total weight= 2226 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.999967 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qddA/info/1qddA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t04.a2m.gz, have 326964 columns in 1367 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jo8A/nostruct-align/1jo8A.t04.a2m.gz # 1jo8A.t04.a2m with 2718 sequences, total weight= 112.929 avg weight= 0.0415484 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33371 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jo8A/info/1jo8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jo8A/nostruct-align/1jo8A.t04.a2m.gz, have 327022 columns in 1368 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t04.a2m.gz # 2cuaA.t04.a2m with 3002 sequences, total weight= 4.94759 avg weight= 0.0016481 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2c/2cuaA/info/2cuaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t04.a2m.gz, have 327144 columns in 1369 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h80A/nostruct-align/1h80A.t04.a2m.gz # 1h80A.t04.a2m with 742 sequences, total weight= 742 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.96698 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h80A/info/1h80A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h80A/nostruct-align/1h80A.t04.a2m.gz, have 327577 columns in 1370 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqsA/nostruct-align/1sqsA.t04.a2m.gz # 1sqsA.t04.a2m with 1111 sequences, total weight= 1111 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00906 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqsA/info/1sqsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sqsA/nostruct-align/1sqsA.t04.a2m.gz, have 327809 columns in 1371 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ix9A/nostruct-align/1ix9A.t04.a2m.gz # 1ix9A.t04.a2m with 1147 sequences, total weight= 25.1968 avg weight= 0.0219675 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ix9A/info/1ix9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ix9A/nostruct-align/1ix9A.t04.a2m.gz, have 328014 columns in 1372 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i4jA/nostruct-align/1i4jA.t04.a2m.gz # 1i4jA.t04.a2m with 416 sequences, total weight= 36.5664 avg weight= 0.0879001 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i4jA/info/1i4jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i4jA/nostruct-align/1i4jA.t04.a2m.gz, have 328124 columns in 1373 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ornA/nostruct-align/1ornA.t04.a2m.gz # 1ornA.t04.a2m with 795 sequences, total weight= 795 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15817 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ornA/info/1ornA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ornA/nostruct-align/1ornA.t04.a2m.gz, have 328338 columns in 1374 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o5kA/nostruct-align/1o5kA.t04.a2m.gz # 1o5kA.t04.a2m with 625 sequences, total weight= 625 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24482 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o5kA/info/1o5kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o5kA/nostruct-align/1o5kA.t04.a2m.gz, have 328633 columns in 1375 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e87A/nostruct-align/1e87A.t04.a2m.gz # 1e87A.t04.a2m with 2219 sequences, total weight= 2219 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04926 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e87A/info/1e87A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e87A/nostruct-align/1e87A.t04.a2m.gz, have 328750 columns in 1376 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kjqA/nostruct-align/1kjqA.t04.a2m.gz # 1kjqA.t04.a2m with 2722 sequences, total weight= 2722 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05726 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kjqA/info/1kjqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kjqA/nostruct-align/1kjqA.t04.a2m.gz, have 329138 columns in 1377 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jsdA/nostruct-align/1jsdA.t04.a2m.gz # 1jsdA.t04.a2m with 2984 sequences, total weight= 9.14647 avg weight= 0.00306517 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jsdA/info/1jsdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jsdA/nostruct-align/1jsdA.t04.a2m.gz, have 329455 columns in 1378 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t04.a2m.gz # 1tif.t04.a2m with 215 sequences, total weight= 9.5684 avg weight= 0.0445042 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tif/info/1tif.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t04.a2m.gz, have 329531 columns in 1379 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqpA/nostruct-align/1dqpA.t04.a2m.gz # 1dqpA.t04.a2m with 2124 sequences, total weight= 2124 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02373 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqpA/info/1dqpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dqpA/nostruct-align/1dqpA.t04.a2m.gz, have 329761 columns in 1380 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qveA/nostruct-align/1qveA.t04.a2m.gz # 1qveA.t04.a2m with 286 sequences, total weight= 33.9389 avg weight= 0.118667 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qveA/info/1qveA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qveA/nostruct-align/1qveA.t04.a2m.gz, have 329887 columns in 1381 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ubkS/nostruct-align/1ubkS.t04.a2m.gz # 1ubkS.t04.a2m with 478 sequences, total weight= 79.3102 avg weight= 0.165921 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3009 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ubkS/info/1ubkS.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ubkS/nostruct-align/1ubkS.t04.a2m.gz, have 330154 columns in 1382 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t2dA/nostruct-align/1t2dA.t04.a2m.gz # 1t2dA.t04.a2m with 1721 sequences, total weight= 1721 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07388 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t2dA/info/1t2dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t2dA/nostruct-align/1t2dA.t04.a2m.gz, have 330469 columns in 1383 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t04.a2m.gz # 2a0b.t04.a2m with 27 sequences, total weight= 8.01079 avg weight= 0.296696 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2a0b/info/2a0b.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t04.a2m.gz, have 330587 columns in 1384 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t04.a2m.gz # 1cczA.t04.a2m with 7591 sequences, total weight= 7591 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00615 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cczA/info/1cczA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t04.a2m.gz, have 330758 columns in 1385 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p0zA/nostruct-align/1p0zA.t04.a2m.gz # 1p0zA.t04.a2m with 71 sequences, total weight= 20.7213 avg weight= 0.291849 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p0zA/info/1p0zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p0zA/nostruct-align/1p0zA.t04.a2m.gz, have 330889 columns in 1386 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1urrA/nostruct-align/1urrA.t04.a2m.gz # 1urrA.t04.a2m with 237 sequences, total weight= 51.23 avg weight= 0.21616 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30126 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1urrA/info/1urrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1urrA/nostruct-align/1urrA.t04.a2m.gz, have 330986 columns in 1387 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o4yA/nostruct-align/1o4yA.t04.a2m.gz # 1o4yA.t04.a2m with 491 sequences, total weight= 491 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10277 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o4yA/info/1o4yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o4yA/nostruct-align/1o4yA.t04.a2m.gz, have 331256 columns in 1388 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t04.a2m.gz # 1guqA.t04.a2m with 627 sequences, total weight= 627 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2415 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1guqA/info/1guqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t04.a2m.gz, have 331603 columns in 1389 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ju3A/nostruct-align/1ju3A.t04.a2m.gz # 1ju3A.t04.a2m with 3004 sequences, total weight= 3004 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.974053 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ju3A/info/1ju3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1ju3A/nostruct-align/1ju3A.t04.a2m.gz, have 332173 columns in 1390 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t04.a2m.gz # 1b8oA.t04.a2m with 684 sequences, total weight= 684 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09128 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b8oA/info/1b8oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t04.a2m.gz, have 332453 columns in 1391 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lzlA/nostruct-align/1lzlA.t04.a2m.gz # 1lzlA.t04.a2m with 3011 sequences, total weight= 3011 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.937918 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lzlA/info/1lzlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lzlA/nostruct-align/1lzlA.t04.a2m.gz, have 332770 columns in 1392 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t04.a2m.gz # 1vcaA.t04.a2m with 7737 sequences, total weight= 7737 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.966189 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vcaA/info/1vcaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t04.a2m.gz, have 332969 columns in 1393 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q6oA/nostruct-align/1q6oA.t04.a2m.gz # 1q6oA.t04.a2m with 1350 sequences, total weight= 1350 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03139 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q6oA/info/1q6oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q6oA/nostruct-align/1q6oA.t04.a2m.gz, have 333182 columns in 1394 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qq9A/nostruct-align/1qq9A.t04.a2m.gz # 1qq9A.t04.a2m with 1802 sequences, total weight= 1802 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.905607 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qq9A/info/1qq9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qq9A/nostruct-align/1qq9A.t04.a2m.gz, have 333459 columns in 1395 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jo0A/nostruct-align/1jo0A.t04.a2m.gz # 1jo0A.t04.a2m with 102 sequences, total weight= 18.4117 avg weight= 0.180506 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jo0A/info/1jo0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jo0A/nostruct-align/1jo0A.t04.a2m.gz, have 333556 columns in 1396 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqeA/nostruct-align/1sqeA.t04.a2m.gz # 1sqeA.t04.a2m with 143 sequences, total weight= 143 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11582 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqeA/info/1sqeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sqeA/nostruct-align/1sqeA.t04.a2m.gz, have 333657 columns in 1397 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jb3A/nostruct-align/1jb3A.t04.a2m.gz # 1jb3A.t04.a2m with 12 sequences, total weight= 2.0564 avg weight= 0.171367 8 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jb3A/info/1jb3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jb3A/nostruct-align/1jb3A.t04.a2m.gz, have 333784 columns in 1398 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uasA/nostruct-align/1uasA.t04.a2m.gz # 1uasA.t04.a2m with 348 sequences, total weight= 348 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04329 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uasA/info/1uasA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uasA/nostruct-align/1uasA.t04.a2m.gz, have 334146 columns in 1399 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyvA/nostruct-align/1hyvA.t04.a2m.gz # 1hyvA.t04.a2m with 3005 sequences, total weight= 415.16 avg weight= 0.138156 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.34285 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyvA/info/1hyvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hyvA/nostruct-align/1hyvA.t04.a2m.gz, have 334290 columns in 1400 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhqA/nostruct-align/1vhqA.t04.a2m.gz # 1vhqA.t04.a2m with 586 sequences, total weight= 586 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17374 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhqA/info/1vhqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhqA/nostruct-align/1vhqA.t04.a2m.gz, have 334507 columns in 1401 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e43A/nostruct-align/1e43A.t04.a2m.gz # 1e43A.t04.a2m with 2389 sequences, total weight= 2389 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01132 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e43A/info/1e43A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e43A/nostruct-align/1e43A.t04.a2m.gz, have 334990 columns in 1402 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkpA/nostruct-align/1nkpA.t04.a2m.gz # 1nkpA.t04.a2m with 769 sequences, total weight= 84.1334 avg weight= 0.109406 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31018 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkpA/info/1nkpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nkpA/nostruct-align/1nkpA.t04.a2m.gz, have 335078 columns in 1403 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iw0A/nostruct-align/1iw0A.t04.a2m.gz # 1iw0A.t04.a2m with 147 sequences, total weight= 85.7894 avg weight= 0.583601 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30073 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iw0A/info/1iw0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iw0A/nostruct-align/1iw0A.t04.a2m.gz, have 335285 columns in 1404 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o6sB/nostruct-align/1o6sB.t04.a2m.gz # 1o6sB.t04.a2m with 6335 sequences, total weight= 6335 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21747 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o6sB/info/1o6sB.stride-mixed.near-backbone-11 WARNING: skipping a, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1o/1o6sB/nostruct-align/1o6sB.t04.a2m.gz, have 335389 columns in 1405 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8kA/nostruct-align/1g8kA.t04.a2m.gz # 1g8kA.t04.a2m with 1178 sequences, total weight= 1178 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14964 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8kA/info/1g8kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g8kA/nostruct-align/1g8kA.t04.a2m.gz, have 336211 columns in 1406 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tuaA/nostruct-align/1tuaA.t04.a2m.gz # 1tuaA.t04.a2m with 115 sequences, total weight= 24.2046 avg weight= 0.210475 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tuaA/info/1tuaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tuaA/nostruct-align/1tuaA.t04.a2m.gz, have 336400 columns in 1407 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r26A/nostruct-align/1r26A.t04.a2m.gz # 1r26A.t04.a2m with 3058 sequences, total weight= 3058 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.937836 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r26A/info/1r26A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r26A/nostruct-align/1r26A.t04.a2m.gz, have 336513 columns in 1408 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t04.a2m.gz # 1mugA.t04.a2m with 219 sequences, total weight= 219 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27058 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mugA/info/1mugA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t04.a2m.gz, have 336678 columns in 1409 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t04.a2m.gz # 1bgf.t04.a2m with 114 sequences, total weight= 11.8196 avg weight= 0.103681 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bgf/info/1bgf.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t04.a2m.gz, have 336802 columns in 1410 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vioA/nostruct-align/1vioA.t04.a2m.gz # 1vioA.t04.a2m with 1009 sequences, total weight= 1009 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26061 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vioA/info/1vioA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vioA/nostruct-align/1vioA.t04.a2m.gz, have 337032 columns in 1411 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nf9A/nostruct-align/1nf9A.t04.a2m.gz # 1nf9A.t04.a2m with 598 sequences, total weight= 598 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10043 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nf9A/info/1nf9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nf9A/nostruct-align/1nf9A.t04.a2m.gz, have 337239 columns in 1412 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t04.a2m.gz # 1ugiA.t04.a2m with 4 sequences, total weight= 1.90323 avg weight= 0.475807 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugiA/info/1ugiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t04.a2m.gz, have 337322 columns in 1413 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eu1A/nostruct-align/1eu1A.t04.a2m.gz # 1eu1A.t04.a2m with 1156 sequences, total weight= 1156 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1561 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eu1A/info/1eu1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eu1A/nostruct-align/1eu1A.t04.a2m.gz, have 338089 columns in 1414 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kr7A/nostruct-align/1kr7A.t04.a2m.gz # 1kr7A.t04.a2m with 3 sequences, total weight= 1.96759 avg weight= 0.655865 8 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kr7A/info/1kr7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kr7A/nostruct-align/1kr7A.t04.a2m.gz, have 338199 columns in 1415 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hx6A/nostruct-align/1hx6A.t04.a2m.gz # 1hx6A.t04.a2m with 5 sequences, total weight= 1.84991 avg weight= 0.369982 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hx6A/info/1hx6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hx6A/nostruct-align/1hx6A.t04.a2m.gz, have 338569 columns in 1416 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sw5A/nostruct-align/1sw5A.t04.a2m.gz # 1sw5A.t04.a2m with 357 sequences, total weight= 357 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25168 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sw5A/info/1sw5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sw5A/nostruct-align/1sw5A.t04.a2m.gz, have 338839 columns in 1417 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqkL/nostruct-align/1mqkL.t04.a2m.gz # 1mqkL.t04.a2m with 3161 sequences, total weight= 8.08258 avg weight= 0.00255697 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqkL/info/1mqkL.stride-mixed.near-backbone-11 WARNING: skipping d, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1m/1mqkL/nostruct-align/1mqkL.t04.a2m.gz, have 338947 columns in 1418 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1szhA/nostruct-align/1szhA.t04.a2m.gz # 1szhA.t04.a2m with 6 sequences, total weight= 3.29984 avg weight= 0.549973 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1szhA/info/1szhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1szhA/nostruct-align/1szhA.t04.a2m.gz, have 339094 columns in 1419 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i60A/nostruct-align/1i60A.t04.a2m.gz # 1i60A.t04.a2m with 910 sequences, total weight= 910 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.892739 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i60A/info/1i60A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i60A/nostruct-align/1i60A.t04.a2m.gz, have 339372 columns in 1420 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i12A/nostruct-align/1i12A.t04.a2m.gz # 1i12A.t04.a2m with 3050 sequences, total weight= 3050 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.780287 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i12A/info/1i12A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i12A/nostruct-align/1i12A.t04.a2m.gz, have 339526 columns in 1421 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kkoA/nostruct-align/1kkoA.t04.a2m.gz # 1kkoA.t04.a2m with 1137 sequences, total weight= 1137 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25656 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kkoA/info/1kkoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kkoA/nostruct-align/1kkoA.t04.a2m.gz, have 339937 columns in 1422 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqaA/nostruct-align/1lqaA.t04.a2m.gz # 1lqaA.t04.a2m with 1751 sequences, total weight= 1751 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24674 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqaA/info/1lqaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lqaA/nostruct-align/1lqaA.t04.a2m.gz, have 340283 columns in 1423 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t04.a2m.gz # 1pcfA.t04.a2m with 33 sequences, total weight= 9.59858 avg weight= 0.290866 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pcfA/info/1pcfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t04.a2m.gz, have 340349 columns in 1424 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r4pA/nostruct-align/1r4pA.t04.a2m.gz # 1r4pA.t04.a2m with 316 sequences, total weight= 117.129 avg weight= 0.37066 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30199 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r4pA/info/1r4pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r4pA/nostruct-align/1r4pA.t04.a2m.gz, have 340630 columns in 1425 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqgA/nostruct-align/1sqgA.t04.a2m.gz # 1sqgA.t04.a2m with 3029 sequences, total weight= 3029 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.859026 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqgA/info/1sqgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sqgA/nostruct-align/1sqgA.t04.a2m.gz, have 341054 columns in 1426 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4xA/nostruct-align/1h4xA.t04.a2m.gz # 1h4xA.t04.a2m with 392 sequences, total weight= 392 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11102 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4xA/info/1h4xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h4xA/nostruct-align/1h4xA.t04.a2m.gz, have 341165 columns in 1427 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t04.a2m.gz # 3eipA.t04.a2m with 12 sequences, total weight= 2.73316 avg weight= 0.227764 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3e/3eipA/info/3eipA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t04.a2m.gz, have 341249 columns in 1428 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k94A/nostruct-align/1k94A.t04.a2m.gz # 1k94A.t04.a2m with 2650 sequences, total weight= 2650 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06703 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k94A/info/1k94A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k94A/nostruct-align/1k94A.t04.a2m.gz, have 341414 columns in 1429 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r62A/nostruct-align/1r62A.t04.a2m.gz # 1r62A.t04.a2m with 3022 sequences, total weight= 435.351 avg weight= 0.14406 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.34878 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r62A/info/1r62A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r62A/nostruct-align/1r62A.t04.a2m.gz, have 341550 columns in 1430 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ihjA/nostruct-align/1ihjA.t04.a2m.gz # 1ihjA.t04.a2m with 2945 sequences, total weight= 2945 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28779 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ihjA/info/1ihjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ihjA/nostruct-align/1ihjA.t04.a2m.gz, have 341644 columns in 1431 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nofA/nostruct-align/1nofA.t04.a2m.gz # 1nofA.t04.a2m with 231 sequences, total weight= 231 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970628 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nofA/info/1nofA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nofA/nostruct-align/1nofA.t04.a2m.gz, have 342027 columns in 1432 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t04.a2m.gz # 1g3p.t04.a2m with 3241 sequences, total weight= 35.7255 avg weight= 0.011023 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g3p/info/1g3p.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t04.a2m.gz, have 342219 columns in 1433 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vdwA/nostruct-align/1vdwA.t04.a2m.gz # 1vdwA.t04.a2m with 808 sequences, total weight= 808 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19613 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vdwA/info/1vdwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vdwA/nostruct-align/1vdwA.t04.a2m.gz, have 342467 columns in 1434 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q1fA/nostruct-align/1q1fA.t04.a2m.gz # 1q1fA.t04.a2m with 1980 sequences, total weight= 1980 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28878 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q1fA/info/1q1fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q1fA/nostruct-align/1q1fA.t04.a2m.gz, have 342615 columns in 1435 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jakA/nostruct-align/1jakA.t04.a2m.gz # 1jakA.t04.a2m with 284 sequences, total weight= 284 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0951 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jakA/info/1jakA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jakA/nostruct-align/1jakA.t04.a2m.gz, have 343114 columns in 1436 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ju2A/nostruct-align/1ju2A.t04.a2m.gz # 1ju2A.t04.a2m with 3001 sequences, total weight= 3001 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.866832 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ju2A/info/1ju2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1ju2A/nostruct-align/1ju2A.t04.a2m.gz, have 343635 columns in 1437 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t04.a2m.gz # 1orc.t04.a2m with 12 sequences, total weight= 2.94398 avg weight= 0.245331 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orc/info/1orc.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t04.a2m.gz, have 343699 columns in 1438 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mhnA/nostruct-align/1mhnA.t04.a2m.gz # 1mhnA.t04.a2m with 105 sequences, total weight= 15.3281 avg weight= 0.145982 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mhnA/info/1mhnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mhnA/nostruct-align/1mhnA.t04.a2m.gz, have 343758 columns in 1439 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2sA/nostruct-align/1d2sA.t04.a2m.gz # 1d2sA.t04.a2m with 1470 sequences, total weight= 1470 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02419 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2sA/info/1d2sA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d2sA/nostruct-align/1d2sA.t04.a2m.gz, have 343928 columns in 1440 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7zA/nostruct-align/1v7zA.t04.a2m.gz # 1v7zA.t04.a2m with 90 sequences, total weight= 78.2874 avg weight= 0.86986 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7zA/info/1v7zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v7zA/nostruct-align/1v7zA.t04.a2m.gz, have 344185 columns in 1441 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ok0A/nostruct-align/1ok0A.t04.a2m.gz # 1ok0A.t04.a2m with 14 sequences, total weight= 3.95964 avg weight= 0.282832 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ok0A/info/1ok0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ok0A/nostruct-align/1ok0A.t04.a2m.gz, have 344259 columns in 1442 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jixA/nostruct-align/1jixA.t04.a2m.gz # 1jixA.t04.a2m with 51 sequences, total weight= 51 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02454 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jixA/info/1jixA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jixA/nostruct-align/1jixA.t04.a2m.gz, have 344610 columns in 1443 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e4cP/nostruct-align/1e4cP.t04.a2m.gz # 1e4cP.t04.a2m with 495 sequences, total weight= 495 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23489 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e4cP/info/1e4cP.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e4cP/nostruct-align/1e4cP.t04.a2m.gz, have 344816 columns in 1444 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ezwA/nostruct-align/1ezwA.t04.a2m.gz # 1ezwA.t04.a2m with 843 sequences, total weight= 843 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11434 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ezwA/info/1ezwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ezwA/nostruct-align/1ezwA.t04.a2m.gz, have 345163 columns in 1445 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f94A/nostruct-align/1f94A.t04.a2m.gz # 1f94A.t04.a2m with 4 sequences, total weight= 1.94522 avg weight= 0.486305 8 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f94A/info/1f94A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f94A/nostruct-align/1f94A.t04.a2m.gz, have 345226 columns in 1446 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kr4A/nostruct-align/1kr4A.t04.a2m.gz # 1kr4A.t04.a2m with 106 sequences, total weight= 22.1961 avg weight= 0.209398 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kr4A/info/1kr4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kr4A/nostruct-align/1kr4A.t04.a2m.gz, have 345336 columns in 1447 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryoA/nostruct-align/1ryoA.t04.a2m.gz # 1ryoA.t04.a2m with 535 sequences, total weight= 65.6881 avg weight= 0.122781 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30093 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryoA/info/1ryoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ryoA/nostruct-align/1ryoA.t04.a2m.gz, have 345660 columns in 1448 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kxoA/nostruct-align/1kxoA.t04.a2m.gz # 1kxoA.t04.a2m with 537 sequences, total weight= 537 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.967922 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kxoA/info/1kxoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kxoA/nostruct-align/1kxoA.t04.a2m.gz, have 345825 columns in 1449 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bu8A/nostruct-align/1bu8A.t04.a2m.gz # 1bu8A.t04.a2m with 3007 sequences, total weight= 3007 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06508 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bu8A/info/1bu8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bu8A/nostruct-align/1bu8A.t04.a2m.gz, have 346271 columns in 1450 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lvmA/nostruct-align/1lvmA.t04.a2m.gz # 1lvmA.t04.a2m with 1467 sequences, total weight= 1467 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09836 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lvmA/info/1lvmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lvmA/nostruct-align/1lvmA.t04.a2m.gz, have 346500 columns in 1451 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwyA/nostruct-align/1gwyA.t04.a2m.gz # 1gwyA.t04.a2m with 14 sequences, total weight= 2.69341 avg weight= 0.192386 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwyA/info/1gwyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gwyA/nostruct-align/1gwyA.t04.a2m.gz, have 346675 columns in 1452 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j24A/nostruct-align/1j24A.t04.a2m.gz # 1j24A.t04.a2m with 99 sequences, total weight= 39.7955 avg weight= 0.401975 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j24A/info/1j24A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j24A/nostruct-align/1j24A.t04.a2m.gz, have 346808 columns in 1453 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfxA/nostruct-align/1sfxA.t04.a2m.gz # 1sfxA.t04.a2m with 52 sequences, total weight= 52 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29283 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfxA/info/1sfxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sfxA/nostruct-align/1sfxA.t04.a2m.gz, have 346917 columns in 1454 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rhcA/nostruct-align/1rhcA.t04.a2m.gz # 1rhcA.t04.a2m with 841 sequences, total weight= 841 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10186 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rhcA/info/1rhcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rhcA/nostruct-align/1rhcA.t04.a2m.gz, have 347247 columns in 1455 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxhA/nostruct-align/1hxhA.t04.a2m.gz # 1hxhA.t04.a2m with 3026 sequences, total weight= 83.5278 avg weight= 0.0276034 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31483 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxhA/info/1hxhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hxhA/nostruct-align/1hxhA.t04.a2m.gz, have 347500 columns in 1456 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f32A/nostruct-align/1f32A.t04.a2m.gz # 1f32A.t04.a2m with 22 sequences, total weight= 8.27314 avg weight= 0.376052 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f32A/info/1f32A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f32A/nostruct-align/1f32A.t04.a2m.gz, have 347627 columns in 1457 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d5tA/nostruct-align/1d5tA.t04.a2m.gz # 1d5tA.t04.a2m with 3000 sequences, total weight= 3000 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.861629 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d5tA/info/1d5tA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d5tA/nostruct-align/1d5tA.t04.a2m.gz, have 348060 columns in 1458 chains # command:CPU_time= 3603.25 sec, elapsed time= 3679.58 sec) # command:# ReportNetQualityForTestTo quality-reports/t04-2621-IDGaaH13-3-13-7-13-9-13-11-near-backbone-11-seeded.test ok. # command:# Testing net t04-2621-IDGaaH13-3-13-7-13-9-13-11-near-backbone-11-seeded.net # Initializing Gain for near-backbone-11 # Initializing Gain for third_layer # Initializing Gain for second_layer # Initializing Gain for FirstLayer # Network initialization done # command:CPU_time= 3721.76 sec, elapsed time= 3810.34 sec) # command: