# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0382/ # command:# Making conformation for sequence T0382 numbered 1 through 123 Created new target T0382 from T0382.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0382/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0382//projects/compbio/experiments/protein-predict/casp7/T0382/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0382//projects/compbio/experiments/protein-predict/casp7/T0382/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0382/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0382/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0382)F37.CB, (T0382)I47.CB) [> 4.0134 = 6.6890 < 8.6957] w=1.0000 to align # Constraint # added constraint: constraint((T0382)F37.CB, (T0382)A77.CB) [> 3.8447 = 6.4078 < 8.3301] w=0.9181 to align # Constraint # added constraint: constraint((T0382)A78.CB, (T0382)R90.CB) [> 3.5998 = 5.9997 < 7.7996] w=0.7703 to align # Constraint # added constraint: constraint((T0382)I47.CB, (T0382)V73.CB) [> 2.9515 = 4.9192 < 6.3950] w=0.7448 to align # Constraint # added constraint: constraint((T0382)E50.CB, (T0382)V73.CB) [> 3.0997 = 5.1661 < 6.7160] w=0.6833 to align # Constraint # added constraint: constraint((T0382)E50.CB, (T0382)Q72.CB) [> 3.8192 = 6.3654 < 8.2750] w=0.6833 to align # Constraint # added constraint: constraint((T0382)I47.CB, (T0382)A77.CB) [> 3.7122 = 6.1869 < 8.0430] w=0.6833 to align # Constraint # added constraint: constraint((T0382)R36.CB, (T0382)A77.CB) [> 3.8900 = 6.4833 < 8.4283] w=0.6833 to align # Constraint # added constraint: constraint((T0382)L51.CB, (T0382)R74.CB) [> 3.9706 = 6.6176 < 8.6029] w=0.6689 to align # Constraint # added constraint: constraint((T0382)N32.CB, (T0382)V84.CB) [> 4.5760 = 7.6266 < 9.9146] w=0.6132 to align # Constraint # added constraint: constraint((T0382)R36.CB, (T0382)L80.CB) [> 4.1821 = 6.9702 < 9.0613] w=0.6132 to align # Constraint # added constraint: constraint((T0382)R36.CB, (T0382)T81.CB) [> 2.9743 = 4.9573 < 6.4444] w=0.6132 to align # Constraint # added constraint: constraint((T0382)R36.CB, (T0382)V84.CB) [> 4.3474 = 7.2456 < 9.4193] w=0.6132 to align # Constraint # added constraint: constraint((T0382)I47.CB, (T0382)R74.CB) [> 2.9218 = 4.8696 < 6.3305] w=0.6063 to align # Constraint # added constraint: constraint((T0382)L51.CB, (T0382)L62.CB) [> 4.2833 = 7.1389 < 9.2806] w=0.6043 to align # Constraint # added constraint: constraint((T0382)A78.CB, (T0382)A89.CB) [> 2.7330 = 4.5551 < 5.9216] w=0.5811 to align # Constraint # added constraint: constraint((T0382)R74.CB, (T0382)C111.CB) [> 3.9573 = 6.5955 < 8.5742] w=0.5811 to align # Constraint # added constraint: constraint((T0382)L65.CB, (T0382)Q76.CB) [> 4.2357 = 7.0595 < 9.1773] w=0.5576 to align # Constraint # added constraint: constraint((T0382)L65.CB, (T0382)A77.CB) [> 2.9091 = 4.8485 < 6.3031] w=0.5562 to align # Constraint # added constraint: constraint((T0382)L62.CB, (T0382)L80.CB) [> 4.0285 = 6.7141 < 8.7283] w=0.5562 to align # Constraint # added constraint: constraint((T0382)F18.CB, (T0382)I47.CB) [> 3.3639 = 5.6065 < 7.2885] w=0.5546 to align # Constraint # added constraint: constraint((T0382)E50.CB, (T0382)M71.CB) [> 4.1613 = 6.9354 < 9.0160] w=0.5451 to align # Constraint # added constraint: constraint((T0382)E50.CB, (T0382)R74.CB) [> 4.0726 = 6.7877 < 8.8240] w=0.5410 to align # Constraint # added constraint: constraint((T0382)A78.CB, (T0382)L93.CB) [> 3.4199 = 5.6999 < 7.4098] w=0.5202 to align # Constraint # added constraint: constraint((T0382)T81.CB, (T0382)L93.CB) [> 4.2989 = 7.1649 < 9.3143] w=0.5187 to align # Constraint # added constraint: constraint((T0382)R54.CB, (T0382)L65.CB) [> 3.9952 = 6.6587 < 8.6563] w=0.5169 to align # Constraint # added constraint: constraint((T0382)F66.CB, (T0382)A78.CB) [> 3.7167 = 6.1945 < 8.0529] w=0.5009 to align # Constraint # added constraint: constraint((T0382)A48.CB, (T0382)R74.CB) [> 4.1374 = 6.8957 < 8.9644] w=0.4886 to align # Constraint # added constraint: constraint((T0382)R54.CB, (T0382)S64.CB) [> 3.4852 = 5.8087 < 7.5514] w=0.4787 to align # Constraint # added constraint: constraint((T0382)E46.CB, (T0382)V73.CB) [> 2.8281 = 4.7134 < 6.1275] w=0.4787 to align # Constraint # added constraint: constraint((T0382)R36.CB, (T0382)A85.CB) [> 4.6940 = 7.8234 < 10.1704] w=0.4675 to align # Constraint # added constraint: constraint((T0382)N32.CB, (T0382)A85.CB) [> 2.8056 = 4.6761 < 6.0789] w=0.4675 to align # Constraint # added constraint: constraint((T0382)R74.CB, (T0382)L93.CB) [> 3.2817 = 5.4696 < 7.1104] w=0.4587 to align # Constraint # added constraint: constraint((T0382)L62.CB, (T0382)A77.CB) [> 3.0072 = 5.0120 < 6.5156] w=0.4365 to align # Constraint # added constraint: constraint((T0382)Y68.CB, (T0382)A77.CB) [> 4.2426 = 7.0711 < 9.1924] w=0.4346 to align # Constraint # added constraint: constraint((T0382)F18.CB, (T0382)L51.CB) [> 4.4543 = 7.4238 < 9.6509] w=0.4270 to align # Constraint # added constraint: constraint((T0382)A28.CB, (T0382)F37.CB) [> 3.0104 = 5.0174 < 6.5226] w=0.4203 to align # Constraint # added constraint: constraint((T0382)W101.CB, (T0382)C111.CB) [> 3.9541 = 6.5902 < 8.5673] w=0.3956 to align # Constraint # added constraint: constraint((T0382)T81.CB, (T0382)Q92.CB) [> 3.8276 = 6.3794 < 8.2932] w=0.3956 to align # Constraint # added constraint: constraint((T0382)A77.CB, (T0382)L93.CB) [> 3.0376 = 5.0626 < 6.5814] w=0.3956 to align # Constraint # added constraint: constraint((T0382)R74.CB, (T0382)A108.CB) [> 4.3316 = 7.2193 < 9.3850] w=0.3916 to align # Constraint # added constraint: constraint((T0382)A77.CB, (T0382)A89.CB) [> 4.6801 = 7.8002 < 10.1402] w=0.3868 to align # Constraint # added constraint: constraint((T0382)V73.CB, (T0382)G109.CA) [> 4.6950 = 7.8250 < 10.1725] w=0.3797 to align # Constraint # added constraint: constraint((T0382)V73.CB, (T0382)C111.CB) [> 3.6908 = 6.1514 < 7.9968] w=0.3797 to align # Constraint # added constraint: constraint((T0382)Q76.CB, (T0382)G109.CA) [> 4.7267 = 7.8777 < 10.2411] w=0.3797 to align # Constraint # added constraint: constraint((T0382)A77.CB, (T0382)G109.CA) [> 3.9260 = 6.5434 < 8.5064] w=0.3797 to align # Constraint # added constraint: constraint((T0382)A77.CB, (T0382)C111.CB) [> 2.2642 = 3.7737 < 4.9058] w=0.3797 to align # Constraint # added constraint: constraint((T0382)L80.CB, (T0382)G109.CA) [> 4.5599 = 7.5998 < 9.8798] w=0.3797 to align # Constraint # added constraint: constraint((T0382)L80.CB, (T0382)L112.CB) [> 3.0234 = 5.0390 < 6.5507] w=0.3797 to align # Constraint # added constraint: constraint((T0382)T81.CB, (T0382)L112.CB) [> 3.8271 = 6.3786 < 8.2921] w=0.3797 to align # Constraint # added constraint: constraint((T0382)F66.CB, (T0382)A77.CB) [> 3.0468 = 5.0780 < 6.6014] w=0.3739 to align # Constraint # added constraint: constraint((T0382)L65.CB, (T0382)R74.CB) [> 4.0886 = 6.8143 < 8.8586] w=0.3739 to align # Constraint # added constraint: constraint((T0382)L63.CB, (T0382)A89.CB) [> 3.8604 = 6.4339 < 8.3641] w=0.3739 to align # Constraint # added constraint: constraint((T0382)L62.CB, (T0382)A89.CB) [> 4.3714 = 7.2857 < 9.4714] w=0.3739 to align # Constraint # added constraint: constraint((T0382)V15.CB, (T0382)L51.CB) [> 4.2074 = 7.0123 < 9.1160] w=0.3644 to align # Constraint # added constraint: constraint((T0382)F18.CB, (T0382)A48.CB) [> 3.6839 = 6.1398 < 7.9818] w=0.3644 to align # Constraint # added constraint: constraint((T0382)Q25.CB, (T0382)M44.CB) [> 3.7308 = 6.2180 < 8.0834] w=0.3624 to align # Constraint # added constraint: constraint((T0382)Q25.CB, (T0382)L40.CB) [> 2.5964 = 4.3273 < 5.6255] w=0.3624 to align # Constraint # added constraint: constraint((T0382)E24.CB, (T0382)L40.CB) [> 3.4453 = 5.7421 < 7.4648] w=0.3624 to align # Constraint # added constraint: constraint((T0382)V21.CB, (T0382)M44.CB) [> 3.4850 = 5.8083 < 7.5508] w=0.3624 to align # Constraint # added constraint: constraint((T0382)F18.CB, (T0382)M44.CB) [> 3.4585 = 5.7642 < 7.4934] w=0.3622 to align # Constraint # added constraint: constraint((T0382)E50.CB, (T0382)N70.CB) [> 3.8153 = 6.3589 < 8.2666] w=0.3427 to align # Constraint # added constraint: constraint((T0382)R54.CB, (T0382)M71.CB) [> 3.8983 = 6.4972 < 8.4463] w=0.3406 to align # Constraint # added constraint: constraint((T0382)L75.CB, (T0382)W101.CB) [> 4.1434 = 6.9056 < 8.9773] w=0.3264 to align # Constraint # added constraint: constraint((T0382)R74.CB, (T0382)W101.CB) [> 3.1067 = 5.1778 < 6.7312] w=0.3264 to align # Constraint # added constraint: constraint((T0382)M71.CB, (T0382)D107.CB) [> 3.8861 = 6.4769 < 8.4199] w=0.3243 to align # Constraint # added constraint: constraint((T0382)L93.CB, (T0382)L115.CB) [> 3.1270 = 5.2116 < 6.7751] w=0.3212 to align # Constraint # added constraint: constraint((T0382)A48.CB, (T0382)K79.CB) [> 3.8709 = 6.4516 < 8.3871] w=0.3200 to align # Constraint # added constraint: constraint((T0382)R54.CB, (T0382)L80.CB) [> 4.4229 = 7.3714 < 9.5829] w=0.3123 to align # Constraint # added constraint: constraint((T0382)A19.CB, (T0382)L65.CB) [> 4.3078 = 7.1796 < 9.3335] w=0.2979 to align # Constraint # added constraint: constraint((T0382)V15.CB, (T0382)L65.CB) [> 3.7627 = 6.2712 < 8.1526] w=0.2979 to align # Constraint # added constraint: constraint((T0382)L6.CB, (T0382)E50.CB) [> 3.6464 = 6.0774 < 7.9006] w=0.2979 to align # Constraint # added constraint: constraint((T0382)T22.CB, (T0382)R74.CB) [> 3.9867 = 6.6445 < 8.6378] w=0.2975 to align # Constraint # added constraint: constraint((T0382)Q25.CB, (T0382)A77.CB) [> 4.0622 = 6.7704 < 8.8015] w=0.2975 to align # Constraint # added constraint: constraint((T0382)A45.CB, (T0382)L75.CB) [> 3.4437 = 5.7394 < 7.4613] w=0.2975 to align # Constraint # added constraint: constraint((T0382)M71.CB, (T0382)W101.CB) [> 3.2515 = 5.4192 < 7.0450] w=0.2629 to align # Constraint # added constraint: constraint((T0382)K52.CB, (T0382)V84.CB) [> 4.6802 = 7.8003 < 10.1404] w=0.2573 to align # Constraint # added constraint: constraint((T0382)A48.CB, (T0382)L75.CB) [> 4.2627 = 7.1045 < 9.2359] w=0.2557 to align # Constraint # added constraint: constraint((T0382)F66.CB, (T0382)A89.CB) [> 3.8017 = 6.3362 < 8.2371] w=0.2508 to align # Constraint # added constraint: constraint((T0382)L29.CB, (T0382)I47.CB) [> 4.0098 = 6.6831 < 8.6880] w=0.2502 to align # Constraint # added constraint: constraint((T0382)L51.CB, (T0382)K79.CB) [> 4.0221 = 6.7035 < 8.7146] w=0.2446 to align # Constraint # added constraint: constraint((T0382)T22.CB, (T0382)N70.CB) [> 3.3927 = 5.6546 < 7.3509] w=0.2349 to align # Constraint # added constraint: constraint((T0382)T22.CB, (T0382)M44.CB) [> 3.2177 = 5.3628 < 6.9716] w=0.2349 to align # Constraint # added constraint: constraint((T0382)T22.CB, (T0382)F41.CB) [> 4.7595 = 7.9325 < 10.3123] w=0.2349 to align # Constraint # added constraint: constraint((T0382)T22.CB, (T0382)L40.CB) [> 4.5653 = 7.6088 < 9.8915] w=0.2349 to align # Constraint # added constraint: constraint((T0382)V21.CB, (T0382)L40.CB) [> 3.1508 = 5.2513 < 6.8267] w=0.2349 to align # Constraint # added constraint: constraint((T0382)A19.CB, (T0382)F66.CB) [> 4.3666 = 7.2777 < 9.4610] w=0.2349 to align # Constraint # added constraint: constraint((T0382)L17.CB, (T0382)I47.CB) [> 3.7772 = 6.2953 < 8.1839] w=0.2349 to align # Constraint # added constraint: constraint((T0382)V15.CB, (T0382)L62.CB) [> 3.6181 = 6.0301 < 7.8392] w=0.2349 to align # Constraint # added constraint: constraint((T0382)L14.CB, (T0382)L51.CB) [> 2.9068 = 4.8446 < 6.2980] w=0.2349 to align # Constraint # added constraint: constraint((T0382)L14.CB, (T0382)E50.CB) [> 4.2210 = 7.0350 < 9.1455] w=0.2349 to align # Constraint # added constraint: constraint((T0382)L14.CB, (T0382)I47.CB) [> 3.0906 = 5.1510 < 6.6963] w=0.2349 to align # Constraint # added constraint: constraint((T0382)T11.CB, (T0382)L62.CB) [> 4.3056 = 7.1759 < 9.3287] w=0.2349 to align # Constraint # added constraint: constraint((T0382)T11.CB, (T0382)G56.CA) [> 3.6695 = 6.1158 < 7.9506] w=0.2349 to align # Constraint # added constraint: constraint((T0382)T11.CB, (T0382)R54.CB) [> 3.2765 = 5.4608 < 7.0990] w=0.2349 to align # Constraint # added constraint: constraint((T0382)T11.CB, (T0382)L51.CB) [> 3.0929 = 5.1549 < 6.7013] w=0.2349 to align # Constraint # added constraint: constraint((T0382)K3.CB, (T0382)D13.CB) [> 4.7762 = 7.9603 < 10.3484] w=0.2349 to align # Constraint # added constraint: constraint((T0382)F41.CB, (T0382)T81.CB) [> 4.0735 = 6.7891 < 8.8259] w=0.2349 to align # Constraint # added constraint: constraint((T0382)N38.CB, (T0382)T81.CB) [> 2.3176 = 3.8626 < 5.0214] w=0.2349 to align # Constraint # added constraint: constraint((T0382)N38.CB, (T0382)A77.CB) [> 4.6484 = 7.7473 < 10.0715] w=0.2349 to align # Constraint # added constraint: constraint((T0382)F37.CB, (T0382)T81.CB) [> 3.5280 = 5.8800 < 7.6440] w=0.2349 to align # Constraint # added constraint: constraint((T0382)I34.CB, (T0382)A83.CB) [> 4.3939 = 7.3231 < 9.5201] w=0.2349 to align # Constraint # added constraint: constraint((T0382)Q25.CB, (T0382)R74.CB) [> 4.2485 = 7.0809 < 9.2051] w=0.2349 to align # Constraint # added constraint: constraint((T0382)Q25.CB, (T0382)R36.CB) [> 4.6972 = 7.8287 < 10.1773] w=0.2349 to align # Constraint # added constraint: constraint((T0382)I47.CB, (T0382)Q58.CB) [> 3.3420 = 5.5700 < 7.2410] w=0.2103 to align # Constraint # added constraint: constraint((T0382)I47.CB, (T0382)R59.CB) [> 3.9451 = 6.5752 < 8.5477] w=0.2103 to align # Constraint # added constraint: constraint((T0382)L40.CB, (T0382)A77.CB) [> 4.7666 = 7.9444 < 10.3277] w=0.2073 to align # Constraint # added constraint: constraint((T0382)L29.CB, (T0382)A78.CB) [> 4.6021 = 7.6702 < 9.9713] w=0.2045 to align # Constraint # added constraint: constraint((T0382)L29.CB, (T0382)T81.CB) [> 4.0535 = 6.7559 < 8.7826] w=0.2045 to align # Constraint # added constraint: constraint((T0382)R74.CB, (T0382)E94.CB) [> 4.3786 = 7.2977 < 9.4870] w=0.2014 to align # Constraint # added constraint: constraint((T0382)R74.CB, (T0382)V97.CB) [> 4.1774 = 6.9623 < 9.0509] w=0.2014 to align # Constraint # added constraint: constraint((T0382)L75.CB, (T0382)L114.CB) [> 4.4643 = 7.4405 < 9.6726] w=0.2014 to align # Constraint # added constraint: constraint((T0382)G31.CA, (T0382)A85.CB) [> 4.5957 = 7.6595 < 9.9574] w=0.2004 to align # Constraint # added constraint: constraint((T0382)L75.CB, (T0382)A108.CB) [> 3.9261 = 6.5436 < 8.5066] w=0.1973 to align # Constraint # added constraint: constraint((T0382)M71.CB, (T0382)A108.CB) [> 2.6911 = 4.4852 < 5.8308] w=0.1973 to align # Constraint # added constraint: constraint((T0382)P86.CB, (T0382)L115.CB) [> 3.1549 = 5.2582 < 6.8357] w=0.1950 to align # Constraint # added constraint: constraint((T0382)V73.CB, (T0382)G106.CA) [> 3.2970 = 5.4950 < 7.1435] w=0.1943 to align # Constraint # added constraint: constraint((T0382)V73.CB, (T0382)A108.CB) [> 2.5023 = 4.1705 < 5.4217] w=0.1943 to align # Constraint # added constraint: constraint((T0382)R74.CB, (T0382)Q104.CB) [> 4.6410 = 7.7349 < 10.0554] w=0.1943 to align # Constraint # added constraint: constraint((T0382)A77.CB, (T0382)F102.CB) [> 4.7618 = 7.9364 < 10.3173] w=0.1943 to align # Constraint # added constraint: constraint((T0382)A77.CB, (T0382)A108.CB) [> 2.7311 = 4.5518 < 5.9174] w=0.1943 to align # Constraint # added constraint: constraint((T0382)L80.CB, (T0382)A108.CB) [> 4.2290 = 7.0484 < 9.1629] w=0.1943 to align # Constraint # added constraint: constraint((T0382)Q92.CB, (T0382)L115.CB) [> 2.5291 = 4.2151 < 5.4796] w=0.1943 to align # Constraint # added constraint: constraint((T0382)L93.CB, (T0382)C111.CB) [> 3.3688 = 5.6146 < 7.2990] w=0.1943 to align # Constraint # added constraint: constraint((T0382)F102.CB, (T0382)C111.CB) [> 3.9044 = 6.5073 < 8.4595] w=0.1943 to align # Constraint # added constraint: constraint((T0382)V15.CB, (T0382)A28.CB) [> 3.8247 = 6.3745 < 8.2868] w=0.1907 to align # Constraint # added constraint: constraint((T0382)M9.CB, (T0382)F18.CB) [> 2.8380 = 4.7300 < 6.1490] w=0.1907 to align # Constraint # added constraint: constraint((T0382)I96.CB, (T0382)L112.CB) [> 4.5846 = 7.6411 < 9.9334] w=0.1896 to align # Constraint # added constraint: constraint((T0382)D57.CB, (T0382)P86.CB) [> 4.3347 = 7.2245 < 9.3919] w=0.1892 to align # Constraint # added constraint: constraint((T0382)L62.CB, (T0382)P86.CB) [> 4.4447 = 7.4078 < 9.6301] w=0.1892 to align # Constraint # added constraint: constraint((T0382)L63.CB, (T0382)A85.CB) [> 4.4072 = 7.3454 < 9.5490] w=0.1892 to align # Constraint # added constraint: constraint((T0382)T22.CB, (T0382)I47.CB) [> 3.9092 = 6.5153 < 8.4699] w=0.1891 to align # Constraint # added constraint: constraint((T0382)M9.CB, (T0382)A28.CB) [> 4.2783 = 7.1304 < 9.2696] w=0.1884 to align # Constraint # added constraint: constraint((T0382)M9.CB, (T0382)R36.CB) [> 4.3136 = 7.1893 < 9.3461] w=0.1884 to align # Constraint # added constraint: constraint((T0382)V15.CB, (T0382)L30.CB) [> 3.8428 = 6.4046 < 8.3260] w=0.1884 to align # Constraint # added constraint: constraint((T0382)V97.CB, (T0382)L114.CB) [> 3.4157 = 5.6928 < 7.4006] w=0.1857 to align # Constraint # added constraint: constraint((T0382)A28.CB, (T0382)A48.CB) [> 4.6605 = 7.7675 < 10.0977] w=0.1854 to align # Constraint # added constraint: constraint((T0382)L30.CB, (T0382)K52.CB) [> 3.9301 = 6.5502 < 8.5153] w=0.1854 to align # Constraint # added constraint: constraint((T0382)F37.CB, (T0382)A48.CB) [> 4.3643 = 7.2739 < 9.4561] w=0.1854 to align # Constraint # added constraint: constraint((T0382)L51.CB, (T0382)A77.CB) [> 3.5760 = 5.9599 < 7.7479] w=0.1853 to align # Constraint # added constraint: constraint((T0382)F66.CB, (T0382)I96.CB) [> 4.3626 = 7.2710 < 9.4522] w=0.1847 to align # Constraint # added constraint: constraint((T0382)L63.CB, (T0382)Q92.CB) [> 3.6605 = 6.1009 < 7.9311] w=0.1847 to align # Constraint # added constraint: constraint((T0382)E50.CB, (T0382)A61.CB) [> 3.6933 = 6.1555 < 8.0021] w=0.1841 to align # Constraint # added constraint: constraint((T0382)L51.CB, (T0382)T60.CB) [> 4.4198 = 7.3664 < 9.5763] w=0.1841 to align # Constraint # added constraint: constraint((T0382)L51.CB, (T0382)A61.CB) [> 3.2965 = 5.4942 < 7.1425] w=0.1841 to align # Constraint # added constraint: constraint((T0382)A61.CB, (T0382)L75.CB) [> 4.5888 = 7.6480 < 9.9424] w=0.1841 to align # Constraint # added constraint: constraint((T0382)A61.CB, (T0382)A77.CB) [> 4.2201 = 7.0335 < 9.1436] w=0.1841 to align # Constraint # added constraint: constraint((T0382)S64.CB, (T0382)Q76.CB) [> 2.6375 = 4.3959 < 5.7147] w=0.1823 to align # Constraint # added constraint: constraint((T0382)A61.CB, (T0382)K79.CB) [> 3.2931 = 5.4885 < 7.1350] w=0.1823 to align # Constraint # added constraint: constraint((T0382)L75.CB, (T0382)I96.CB) [> 3.6470 = 6.0783 < 7.9019] w=0.1355 to align # Constraint # added constraint: constraint((T0382)T10.CB, (T0382)R36.CB) [> 4.7262 = 7.8770 < 10.2401] w=0.1342 to align # Constraint # added constraint: constraint((T0382)T11.CB, (T0382)R36.CB) [> 2.3055 = 3.8425 < 4.9953] w=0.1342 to align # Constraint # added constraint: constraint((T0382)Q12.CB, (T0382)R36.CB) [> 3.6968 = 6.1613 < 8.0097] w=0.1342 to align # Constraint # added constraint: constraint((T0382)V15.CB, (T0382)R36.CB) [> 4.6542 = 7.7569 < 10.0840] w=0.1342 to align # Constraint # added constraint: constraint((T0382)L82.CB, (T0382)L115.CB) [> 4.5869 = 7.6449 < 9.9383] w=0.1342 to align # Constraint # added constraint: constraint((T0382)K79.CB, (T0382)L115.CB) [> 4.5206 = 7.5343 < 9.7947] w=0.1342 to align # Constraint # added constraint: constraint((T0382)A48.CB, (T0382)V84.CB) [> 4.5555 = 7.5925 < 9.8703] w=0.1342 to align # Constraint # added constraint: constraint((T0382)A48.CB, (T0382)A83.CB) [> 3.4118 = 5.6864 < 7.3923] w=0.1342 to align # Constraint # added constraint: constraint((T0382)R74.CB, (T0382)I96.CB) [> 3.9425 = 6.5709 < 8.5422] w=0.1339 to align # Constraint # added constraint: constraint((T0382)L75.CB, (T0382)P103.CB) [> 3.9088 = 6.5147 < 8.4691] w=0.1306 to align # Constraint # added constraint: constraint((T0382)A48.CB, (T0382)R59.CB) [> 3.5302 = 5.8837 < 7.6488] w=0.1281 to align # Constraint # added constraint: constraint((T0382)A48.CB, (T0382)Q58.CB) [> 4.3930 = 7.3216 < 9.5181] w=0.1281 to align # Constraint # added constraint: constraint((T0382)V21.CB, (T0382)E50.CB) [> 4.3987 = 7.3312 < 9.5305] w=0.1276 to align # Constraint # added constraint: constraint((T0382)T10.CB, (T0382)A19.CB) [> 4.7220 = 7.8700 < 10.2310] w=0.1276 to align # Constraint # added constraint: constraint((T0382)M9.CB, (T0382)E50.CB) [> 4.7301 = 7.8835 < 10.2486] w=0.1276 to align # Constraint # added constraint: constraint((T0382)Y68.CB, (T0382)L114.CB) [> 3.3970 = 5.6617 < 7.3601] w=0.1270 to align # Constraint # added constraint: constraint((T0382)Y68.CB, (T0382)M110.CB) [> 3.9031 = 6.5051 < 8.4567] w=0.1270 to align # Constraint # added constraint: constraint((T0382)S64.CB, (T0382)L115.CB) [> 3.6923 = 6.1539 < 8.0001] w=0.1270 to align # Constraint # added constraint: constraint((T0382)A61.CB, (T0382)L82.CB) [> 3.8995 = 6.4991 < 8.4488] w=0.1270 to align # Constraint # added constraint: constraint((T0382)Q58.CB, (T0382)P86.CB) [> 4.5233 = 7.5388 < 9.8004] w=0.1270 to align # Constraint # added constraint: constraint((T0382)V97.CB, (T0382)A108.CB) [> 2.7984 = 4.6640 < 6.0632] w=0.1270 to align # Constraint # added constraint: constraint((T0382)V97.CB, (T0382)D107.CB) [> 4.5063 = 7.5104 < 9.7636] w=0.1270 to align # Constraint # added constraint: constraint((T0382)L93.CB, (T0382)D116.CB) [> 3.2422 = 5.4037 < 7.0248] w=0.1270 to align # Constraint # added constraint: constraint((T0382)P69.CB, (T0382)M110.CB) [> 3.8414 = 6.4024 < 8.3231] w=0.1270 to align # Constraint # added constraint: constraint((T0382)A16.CB, (T0382)L30.CB) [> 3.5229 = 5.8715 < 7.6330] w=0.1266 to align # Constraint # added constraint: constraint((T0382)K3.CB, (T0382)R54.CB) [> 4.2491 = 7.0818 < 9.2064] w=0.1262 to align # Constraint # added constraint: constraint((T0382)L6.CB, (T0382)R54.CB) [> 3.2895 = 5.4824 < 7.1272] w=0.1262 to align # Constraint # added constraint: constraint((T0382)H7.CB, (T0382)R54.CB) [> 4.1039 = 6.8398 < 8.8917] w=0.1262 to align # Constraint # added constraint: constraint((T0382)A48.CB, (T0382)A77.CB) [> 2.7929 = 4.6548 < 6.0512] w=0.1262 to align # Constraint # added constraint: constraint((T0382)F18.CB, (T0382)A78.CB) [> 4.0952 = 6.8253 < 8.8730] w=0.1252 to align # Constraint # added constraint: constraint((T0382)L93.CB, (T0382)Q104.CB) [> 4.0180 = 6.6966 < 8.7056] w=0.1252 to align # Constraint # added constraint: constraint((T0382)M9.CB, (T0382)I47.CB) [> 3.5491 = 5.9152 < 7.6898] w=0.1249 to align # Constraint # added constraint: constraint((T0382)L14.CB, (T0382)A28.CB) [> 3.3960 = 5.6600 < 7.3580] w=0.1236 to align # Constraint # added constraint: constraint((T0382)L14.CB, (T0382)L29.CB) [> 3.9310 = 6.5517 < 8.5172] w=0.1236 to align # Constraint # added constraint: constraint((T0382)R54.CB, (T0382)A77.CB) [> 4.5308 = 7.5513 < 9.8167] w=0.1231 to align # Constraint # added constraint: constraint((T0382)V87.CB, (T0382)Q104.CB) [> 4.7413 = 7.9022 < 10.2729] w=0.1231 to align # Constraint # added constraint: constraint((T0382)R90.CB, (T0382)P103.CB) [> 3.2722 = 5.4537 < 7.0898] w=0.1231 to align # Constraint # added constraint: constraint((T0382)R90.CB, (T0382)D107.CB) [> 4.1278 = 6.8797 < 8.9436] w=0.1231 to align # Constraint # added constraint: constraint((T0382)A83.CB, (T0382)L93.CB) [> 3.8801 = 6.4668 < 8.4069] w=0.1215 to align # Constraint # added constraint: constraint((T0382)R54.CB, (T0382)E67.CB) [> 4.7712 = 7.9520 < 10.3376] w=0.0691 to align # Constraint # added constraint: constraint((T0382)Q12.CB, (T0382)A28.CB) [> 4.6645 = 7.7741 < 10.1064] w=0.0671 to align # Constraint # added constraint: constraint((T0382)P103.CB, (T0382)L112.CB) [> 4.0305 = 6.7175 < 8.7327] w=0.0671 to align # Constraint # added constraint: constraint((T0382)R74.CB, (T0382)P103.CB) [> 4.7700 = 7.9499 < 10.3349] w=0.0671 to align # Constraint # added constraint: constraint((T0382)F41.CB, (T0382)A83.CB) [> 3.4187 = 5.6978 < 7.4071] w=0.0671 to align # Constraint # added constraint: constraint((T0382)A48.CB, (T0382)T60.CB) [> 4.3006 = 7.1677 < 9.3180] w=0.0655 to align # Constraint # added constraint: constraint((T0382)E50.CB, (T0382)A77.CB) [> 3.4207 = 5.7012 < 7.4116] w=0.0655 to align # Constraint # added constraint: constraint((T0382)R59.CB, (T0382)Q72.CB) [> 3.7433 = 6.2388 < 8.1104] w=0.0655 to align # Constraint # added constraint: constraint((T0382)V43.CB, (T0382)K88.CB) [> 3.3755 = 5.6259 < 7.3137] w=0.0653 to align # Constraint # added constraint: constraint((T0382)H7.CB, (T0382)R36.CB) [> 4.7712 = 7.9520 < 10.3376] w=0.0648 to align # Constraint # added constraint: constraint((T0382)H7.CB, (T0382)R39.CB) [> 4.5016 = 7.5026 < 9.7534] w=0.0648 to align # Constraint # added constraint: constraint((T0382)Q8.CB, (T0382)R36.CB) [> 2.7446 = 4.5743 < 5.9466] w=0.0648 to align # Constraint # added constraint: constraint((T0382)L17.CB, (T0382)G31.CA) [> 4.0598 = 6.7664 < 8.7963] w=0.0648 to align # Constraint # added constraint: constraint((T0382)L29.CB, (T0382)M44.CB) [> 3.1993 = 5.3322 < 6.9319] w=0.0648 to align # Constraint # added constraint: constraint((T0382)D26.CB, (T0382)L51.CB) [> 4.1749 = 6.9582 < 9.0456] w=0.0648 to align # Constraint # added constraint: constraint((T0382)D26.CB, (T0382)I47.CB) [> 4.7964 = 7.9939 < 10.3921] w=0.0648 to align # Constraint # added constraint: constraint((T0382)I34.CB, (T0382)G109.CA) [> 3.5523 = 5.9205 < 7.6966] w=0.0635 to align # Constraint # added constraint: constraint((T0382)Q8.CB, (T0382)M110.CB) [> 4.3674 = 7.2789 < 9.4626] w=0.0635 to align # Constraint # added constraint: constraint((T0382)L93.CB, (T0382)T119.CB) [> 4.0803 = 6.8005 < 8.8406] w=0.0635 to align # Constraint # added constraint: constraint((T0382)V84.CB, (T0382)S99.CB) [> 3.1358 = 5.2264 < 6.7943] w=0.0635 to align # Constraint # added constraint: constraint((T0382)A83.CB, (T0382)K100.CB) [> 4.7730 = 7.9551 < 10.3416] w=0.0635 to align # Constraint # added constraint: constraint((T0382)L51.CB, (T0382)D107.CB) [> 4.7217 = 7.8695 < 10.2303] w=0.0635 to align # Constraint # added constraint: constraint((T0382)L51.CB, (T0382)A108.CB) [> 2.2179 = 3.6966 < 4.8055] w=0.0635 to align # Constraint # added constraint: constraint((T0382)L51.CB, (T0382)G109.CA) [> 4.5117 = 7.5195 < 9.7754] w=0.0635 to align # Constraint # added constraint: constraint((T0382)A61.CB, (T0382)T119.CB) [> 4.2804 = 7.1340 < 9.2742] w=0.0635 to align # Constraint # added constraint: constraint((T0382)T10.CB, (T0382)R54.CB) [> 4.5295 = 7.5492 < 9.8140] w=0.0631 to align # Constraint # added constraint: constraint((T0382)L6.CB, (T0382)I47.CB) [> 3.1449 = 5.2415 < 6.8139] w=0.0631 to align # Constraint # added constraint: constraint((T0382)L6.CB, (T0382)V21.CB) [> 3.4736 = 5.7893 < 7.5261] w=0.0631 to align # Constraint # added constraint: constraint((T0382)L75.CB, (T0382)L93.CB) [> 3.1204 = 5.2006 < 6.7608] w=0.0631 to align # Constraint # added constraint: constraint((T0382)R74.CB, (T0382)A105.CB) [> 4.3029 = 7.1715 < 9.3229] w=0.0631 to align # Constraint # added constraint: constraint((T0382)A19.CB, (T0382)R54.CB) [> 3.8551 = 6.4251 < 8.3527] w=0.0631 to align # Constraint # added constraint: constraint((T0382)A19.CB, (T0382)R74.CB) [> 4.7889 = 7.9815 < 10.3759] w=0.0631 to align # Constraint # added constraint: constraint((T0382)A19.CB, (T0382)A77.CB) [> 2.7929 = 4.6548 < 6.0512] w=0.0631 to align # Constraint # added constraint: constraint((T0382)K20.CB, (T0382)R54.CB) [> 4.7233 = 7.8722 < 10.2338] w=0.0631 to align # Constraint # added constraint: constraint((T0382)G31.CA, (T0382)A105.CB) [> 3.7963 = 6.3272 < 8.2254] w=0.0626 to align # Constraint # added constraint: constraint((T0382)V23.CB, (T0382)A77.CB) [> 4.0686 = 6.7810 < 8.8153] w=0.0626 to align # Constraint # added constraint: constraint((T0382)V23.CB, (T0382)A85.CB) [> 4.3195 = 7.1992 < 9.3590] w=0.0626 to align # Constraint # added constraint: constraint((T0382)A48.CB, (T0382)L82.CB) [> 3.8138 = 6.3563 < 8.2632] w=0.0626 to align # Constraint # added constraint: constraint((T0382)A95.CB, (T0382)D113.CB) [> 3.6166 = 6.0277 < 7.8360] w=0.0626 to align # Constraint # added constraint: constraint((T0382)I47.CB, (T0382)L82.CB) [> 4.7701 = 7.9501 < 10.3352] w=0.0626 to align # Constraint # added constraint: constraint((T0382)I47.CB, (T0382)L93.CB) [> 3.5691 = 5.9484 < 7.7329] w=0.0622 to align # Constraint # added constraint: constraint((T0382)L14.CB, (T0382)D27.CB) [> 4.3629 = 7.2715 < 9.4529] w=0.0618 to align # Constraint # added constraint: constraint((T0382)V23.CB, (T0382)I47.CB) [> 3.9707 = 6.6178 < 8.6032] w=0.0616 to align # Constraint # added constraint: constraint((T0382)L63.CB, (T0382)A77.CB) [> 4.6637 = 7.7728 < 10.1046] w=0.0616 to align # Constraint # added constraint: constraint((T0382)N38.CB, (T0382)I47.CB) [> 3.9345 = 6.5574 < 8.5247] w=0.0616 to align # Constraint # added constraint: constraint((T0382)L82.CB, (T0382)L93.CB) [> 2.4134 = 4.0223 < 5.2291] w=0.0608 to align # Constraint # added constraint: constraint((T0382)Q58.CB, (T0382)V84.CB) [> 4.1347 = 6.8911 < 8.9584] w=0.0608 to align # Constraint # added constraint: constraint((T0382)E50.CB, (T0382)P103.CB) [> 2.7664 = 4.6108 < 5.9940] w=0.0608 to align # Constraint # added constraint: constraint((T0382)E50.CB, (T0382)R59.CB) [> 4.2792 = 7.1319 < 9.2715] w=0.0608 to align # Constraint # added constraint: constraint((T0382)L82.CB, (T0382)A108.CB) [> 4.6482 = 7.7470 < 10.0711] w=0.0608 to align # Constraint # added constraint: constraint((T0382)L82.CB, (T0382)L112.CB) [> 3.1319 = 5.2198 < 6.7858] w=0.0608 to align # Constraint # added constraint: constraint((T0382)V84.CB, (T0382)C111.CB) [> 4.7355 = 7.8926 < 10.2603] w=0.0608 to align # Constraint # added constraint: constraint((T0382)V84.CB, (T0382)L112.CB) [> 4.7445 = 7.9076 < 10.2798] w=0.0608 to align # Constraint # added constraint: constraint((T0382)P86.CB, (T0382)L112.CB) [> 4.7778 = 7.9630 < 10.3519] w=0.0608 to align # Constraint # added constraint: constraint((T0382)G106.CA, (T0382)D117.CB) [> 4.1218 = 6.8697 < 8.9306] w=0.0501 to align # Constraint # added constraint: constraint((T0382)G106.CA, (T0382)D116.CB) [> 2.9533 = 4.9222 < 6.3988] w=0.0501 to align # Constraint # added constraint: constraint((T0382)F102.CB, (T0382)D117.CB) [> 3.8838 = 6.4730 < 8.4149] w=0.0501 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0382/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0382/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0382)Q72.C and (T0382)V73.N only 0 apart, marking (T0382)V73.N as missing WARNING: atoms too close: (T0382)V73.N and (T0382)V73.CA only 0 apart, marking (T0382)V73.CA as missing WARNING: atoms too close: (T0382)Q72.C and (T0382)V73.CA only 0 apart, marking (T0382)V73.CA as missing WARNING: atoms too close: (T0382)V73.CA and (T0382)V73.CB only 0 apart, marking (T0382)V73.CB as missing WARNING: atoms too close: (T0382)V73.N and (T0382)V73.CB only 0 apart, marking (T0382)V73.CB as missing WARNING: atoms too close: (T0382)Q72.C and (T0382)V73.CB only 0 apart, marking (T0382)V73.CB as missing WARNING: atoms too close: (T0382)V73.CB and (T0382)V73.CG1 only 0 apart, marking (T0382)V73.CG1 as missing WARNING: atoms too close: (T0382)V73.CA and (T0382)V73.CG1 only 0 apart, marking (T0382)V73.CG1 as missing WARNING: atoms too close: (T0382)V73.N and (T0382)V73.CG1 only 0 apart, marking (T0382)V73.CG1 as missing WARNING: atoms too close: (T0382)Q72.C and (T0382)V73.CG1 only 0 apart, marking (T0382)V73.CG1 as missing WARNING: atoms too close: (T0382)V73.CG1 and (T0382)V73.CG2 only 0 apart, marking (T0382)V73.CG2 as missing WARNING: atoms too close: (T0382)V73.CB and (T0382)V73.CG2 only 0 apart, marking (T0382)V73.CG2 as missing WARNING: atoms too close: (T0382)V73.CA and (T0382)V73.CG2 only 0 apart, marking (T0382)V73.CG2 as missing WARNING: atoms too close: (T0382)V73.N and (T0382)V73.CG2 only 0 apart, marking (T0382)V73.CG2 as missing WARNING: atoms too close: (T0382)Q72.C and (T0382)V73.CG2 only 0 apart, marking (T0382)V73.CG2 as missing WARNING: atoms too close: (T0382)V73.CG2 and (T0382)V73.O only 0 apart, marking (T0382)V73.O as missing WARNING: atoms too close: (T0382)V73.CG1 and (T0382)V73.O only 0 apart, marking (T0382)V73.O as missing WARNING: atoms too close: (T0382)V73.CB and (T0382)V73.O only 0 apart, marking (T0382)V73.O as missing WARNING: atoms too close: (T0382)V73.CA and (T0382)V73.O only 0 apart, marking (T0382)V73.O as missing WARNING: atoms too close: (T0382)V73.N and (T0382)V73.O only 0 apart, marking (T0382)V73.O as missing WARNING: atoms too close: (T0382)Q72.C and (T0382)V73.O only 0 apart, marking (T0382)V73.O as missing WARNING: atoms too close: (T0382)V73.O and (T0382)V73.C only 0 apart, marking (T0382)V73.C as missing WARNING: atoms too close: (T0382)V73.CG2 and (T0382)V73.C only 0 apart, marking (T0382)V73.C as missing WARNING: atoms too close: (T0382)V73.CG1 and (T0382)V73.C only 0 apart, marking (T0382)V73.C as missing WARNING: atoms too close: (T0382)V73.CB and (T0382)V73.C only 0 apart, marking (T0382)V73.C as missing WARNING: atoms too close: (T0382)V73.CA and (T0382)V73.C only 0 apart, marking (T0382)V73.C as missing WARNING: atoms too close: (T0382)V73.N and (T0382)V73.C only 0 apart, marking (T0382)V73.C as missing WARNING: atoms too close: (T0382)Q72.C and (T0382)V73.C only 0 apart, marking (T0382)V73.C as missing # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 Skipped atom 2, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 4, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 6, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 8, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 302, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 304, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 306, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 308, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 Skipped atom 2, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 4, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 6, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 8, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 302, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 304, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 306, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 308, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 20 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 20 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 41 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 Skipped atom 7, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0382)P69.O and (T0382)N70.N only 0.000 apart, marking (T0382)N70.N as missing # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0382)L6.O and (T0382)H7.N only 0.000 apart, marking (T0382)H7.N as missing WARNING: atoms too close: (T0382)A108.O and (T0382)G109.N only 0.000 apart, marking (T0382)G109.N as missing WARNING: atoms too close: (T0382)L112.O and (T0382)D113.N only 0.000 apart, marking (T0382)D113.N as missing # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0382)D113.O and (T0382)L114.N only 0.000 apart, marking (T0382)L114.N as missing # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0382 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 259 model score 2.2702 model score 2.1806 model score 2.1861 model score 2.3480 model score 2.2161 model score 2.0916 model score 2.0908 model score 2.0908 model score 2.0908 model score 2.0908 model score 2.1193 model score 2.0908 model score 1.6253 model score 2.1281 model score 1.8546 model score 2.0436 model score 1.7331 model score 1.6253 model score 1.7474 model score 1.5628 model score 1.4308 model score 1.5224 model score 1.2693 model score 1.6467 model score 3.0261 model score 1.6066 model score 1.7029 model score 1.6974 model score 1.5279 model score 1.6493 model score 1.6715 model score 1.4909 model score 2.0296 model score 1.5296 model score 2.1478 model score 1.4868 model score 1.7257 model score 1.9206 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.8528 model score 1.7085 model score 1.5114 model score 1.9255 model score 1.7357 model score 1.7201 model score 1.5204 model score 1.8217 model score 1.5688 model score 1.5593 model score 2.1281 model score 1.8546 model score 2.0436 model score 1.7331 model score 1.7366 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.9100 model score 2.1659 model score 2.0948 model score 1.9875 model score 2.3631 model score 2.6401 model score 2.1003 model score 1.6741 model score 2.5619 model score 1.9056 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.5141 model score 1.9159 model score 1.3470 model score 1.6857 model score 1.9984 model score 1.8096 model score 1.7283 model score 1.6246 model score 2.0797 model score 1.9165 model score 1.1415 model score 1.2939 model score 1.5996 model score 1.8847 model score 1.9516 model score 1.2036 model score 1.2036 model score 1.3850 model score 1.4710 model score 1.7736 model score 1.3239 model score 1.3669 model score 1.5125 model score 1.5871 model score 1.6155 model score 1.9541 model score 1.5600 model score 1.9060 model score 1.2771 model score 1.6680 model score 1.5700 model score 2.0758 model score 2.1557 model score 1.9383 model score 1.5239 model score 1.6612 model score 1.3767 model score 1.0758 model score 1.6109 model score 1.5061 model score 1.5411 model score 0.9236 model score 1.3158 model score 1.8254 model score 1.9669 model score 1.6802 model score 1.8652 model score 1.6668 model score 1.8665 model score 1.7009 model score 1.5992 model score 1.6102 model score 1.5839 model score 1.6143 model score 1.5554 model score 1.5607 model score 1.6225 model score 1.5839 model score 2.0796 model score 2.0063 model score 1.2251 model score 1.3907 model score 2.1656 model score 2.0760 model score 2.0703 model score 2.0798 model score 1.3149 model score 1.8763 model score 1.5501 model score 1.8909 model score 1.8033 model score 1.5430 model score 1.2522 model score 1.6709 model score 1.3994 model score 1.8150 model score 1.9071 model score 1.8700 model score 1.6129 model score 1.4171 model score 1.5258 model score 1.1778 model score 1.2791 model score 1.2552 model score 1.7091 model score 1.4837 model score 1.1794 model score 1.2317 model score 1.1939 model score 1.6740 model score 1.4583 model score 1.8697 model score 1.2251 model score 1.9903 model score 1.3907 model score 1.6709 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.3841 model score 1.2206 model score 1.0961 model score 1.3415 model score 1.2944 model score 1.9614 model score 1.6841 model score 1.8330 model score 1.6475 model score 2.0820 model score 1.3973 model score 1.1908 model score 1.8521 model score 1.9964 model score 1.8794 model score 2.0182 model score 1.6841 model score 2.1064 model score 2.0568 model score 2.0750 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.1283 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.0782 model score 1.1084 model score 1.0143 model score 0.9361 model score 1.5100 model score 1.9420 model score 1.9238 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.7284 model score 2.1926 model score 2.2914 model score 1.6812 model score 2.1945 model score 2.0776 model score 2.1194 model score 1.9075 model score 2.0639 model score 1.8121 model score 1.3036 model score 1.6585 model score 1.5604 model score 1.6957 model score 1.3021 model score 1.7590 model score 1.1760 model score 1.6753 model score 1.7259 model score 1.7276 model score 1.9669 model score 1.9669 model score 1.9719 model score 1.9511 model score 2.0631 model score 1.4478 model score 1.2865 model score 1.8398 weight: 0.4236 eval: 2.2702 min: 0.9236 max: 3.0261 weight: 0.4619 eval: 2.1806 min: 0.9236 max: 3.0261 weight: 0.4596 eval: 2.1861 min: 0.9236 max: 3.0261 weight: 0.3903 eval: 2.3480 min: 0.9236 max: 3.0261 weight: 0.4467 eval: 2.2161 min: 0.9236 max: 3.0261 weight: 0.5000 eval: 2.0916 min: 0.9236 max: 3.0261 weight: 0.5004 eval: 2.0908 min: 0.9236 max: 3.0261 weight: 0.5004 eval: 2.0908 min: 0.9236 max: 3.0261 weight: 0.5004 eval: 2.0908 min: 0.9236 max: 3.0261 weight: 0.5004 eval: 2.0908 min: 0.9236 max: 3.0261 weight: 0.4882 eval: 2.1193 min: 0.9236 max: 3.0261 weight: 0.5004 eval: 2.0908 min: 0.9236 max: 3.0261 weight: 0.6996 eval: 1.6253 min: 0.9236 max: 3.0261 weight: 0.4844 eval: 2.1281 min: 0.9236 max: 3.0261 weight: 0.6015 eval: 1.8546 min: 0.9236 max: 3.0261 weight: 0.5206 eval: 2.0436 min: 0.9236 max: 3.0261 weight: 0.6535 eval: 1.7331 min: 0.9236 max: 3.0261 weight: 0.6996 eval: 1.6253 min: 0.9236 max: 3.0261 weight: 0.6474 eval: 1.7474 min: 0.9236 max: 3.0261 weight: 0.7264 eval: 1.5628 min: 0.9236 max: 3.0261 weight: 0.7829 eval: 1.4308 min: 0.9236 max: 3.0261 weight: 0.7437 eval: 1.5224 min: 0.9236 max: 3.0261 weight: 0.8520 eval: 1.2693 min: 0.9236 max: 3.0261 weight: 0.6905 eval: 1.6467 min: 0.9236 max: 3.0261 weight: 0.1000 eval: 3.0261 min: 0.9236 max: 3.0261 weight: 0.7076 eval: 1.6066 min: 0.9236 max: 3.0261 weight: 0.6664 eval: 1.7029 min: 0.9236 max: 3.0261 weight: 0.6688 eval: 1.6974 min: 0.9236 max: 3.0261 weight: 0.7413 eval: 1.5279 min: 0.9236 max: 3.0261 weight: 0.6893 eval: 1.6493 min: 0.9236 max: 3.0261 weight: 0.6798 eval: 1.6715 min: 0.9236 max: 3.0261 weight: 0.7572 eval: 1.4909 min: 0.9236 max: 3.0261 weight: 0.5266 eval: 2.0296 min: 0.9236 max: 3.0261 weight: 0.7406 eval: 1.5296 min: 0.9236 max: 3.0261 weight: 0.4760 eval: 2.1478 min: 0.9236 max: 3.0261 weight: 0.7589 eval: 1.4868 min: 0.9236 max: 3.0261 weight: 0.6566 eval: 1.7257 min: 0.9236 max: 3.0261 weight: 0.5732 eval: 1.9206 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.6022 eval: 1.8528 min: 0.9236 max: 3.0261 weight: 0.6640 eval: 1.7085 min: 0.9236 max: 3.0261 weight: 0.7484 eval: 1.5114 min: 0.9236 max: 3.0261 weight: 0.5711 eval: 1.9255 min: 0.9236 max: 3.0261 weight: 0.6524 eval: 1.7357 min: 0.9236 max: 3.0261 weight: 0.6590 eval: 1.7201 min: 0.9236 max: 3.0261 weight: 0.7445 eval: 1.5204 min: 0.9236 max: 3.0261 weight: 0.6155 eval: 1.8217 min: 0.9236 max: 3.0261 weight: 0.7238 eval: 1.5688 min: 0.9236 max: 3.0261 weight: 0.7279 eval: 1.5593 min: 0.9236 max: 3.0261 weight: 0.4844 eval: 2.1281 min: 0.9236 max: 3.0261 weight: 0.6015 eval: 1.8546 min: 0.9236 max: 3.0261 weight: 0.5206 eval: 2.0436 min: 0.9236 max: 3.0261 weight: 0.6535 eval: 1.7331 min: 0.9236 max: 3.0261 weight: 0.6520 eval: 1.7366 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.5778 eval: 1.9100 min: 0.9236 max: 3.0261 weight: 0.4682 eval: 2.1659 min: 0.9236 max: 3.0261 weight: 0.4987 eval: 2.0948 min: 0.9236 max: 3.0261 weight: 0.5446 eval: 1.9875 min: 0.9236 max: 3.0261 weight: 0.3838 eval: 2.3631 min: 0.9236 max: 3.0261 weight: 0.2652 eval: 2.6401 min: 0.9236 max: 3.0261 weight: 0.4963 eval: 2.1003 min: 0.9236 max: 3.0261 weight: 0.6787 eval: 1.6741 min: 0.9236 max: 3.0261 weight: 0.2987 eval: 2.5619 min: 0.9236 max: 3.0261 weight: 0.5797 eval: 1.9056 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.7472 eval: 1.5141 min: 0.9236 max: 3.0261 weight: 0.5752 eval: 1.9159 min: 0.9236 max: 3.0261 weight: 0.8188 eval: 1.3470 min: 0.9236 max: 3.0261 weight: 0.6738 eval: 1.6857 min: 0.9236 max: 3.0261 weight: 0.5399 eval: 1.9984 min: 0.9236 max: 3.0261 weight: 0.6207 eval: 1.8096 min: 0.9236 max: 3.0261 weight: 0.6555 eval: 1.7283 min: 0.9236 max: 3.0261 weight: 0.6999 eval: 1.6246 min: 0.9236 max: 3.0261 weight: 0.5051 eval: 2.0797 min: 0.9236 max: 3.0261 weight: 0.5750 eval: 1.9165 min: 0.9236 max: 3.0261 weight: 0.9067 eval: 1.1415 min: 0.9236 max: 3.0261 weight: 0.8415 eval: 1.2939 min: 0.9236 max: 3.0261 weight: 0.7106 eval: 1.5996 min: 0.9236 max: 3.0261 weight: 0.5886 eval: 1.8847 min: 0.9236 max: 3.0261 weight: 0.5599 eval: 1.9516 min: 0.9236 max: 3.0261 weight: 0.8801 eval: 1.2036 min: 0.9236 max: 3.0261 weight: 0.8801 eval: 1.2036 min: 0.9236 max: 3.0261 weight: 0.8025 eval: 1.3850 min: 0.9236 max: 3.0261 weight: 0.7657 eval: 1.4710 min: 0.9236 max: 3.0261 weight: 0.6362 eval: 1.7736 min: 0.9236 max: 3.0261 weight: 0.8286 eval: 1.3239 min: 0.9236 max: 3.0261 weight: 0.8102 eval: 1.3669 min: 0.9236 max: 3.0261 weight: 0.7479 eval: 1.5125 min: 0.9236 max: 3.0261 weight: 0.7160 eval: 1.5871 min: 0.9236 max: 3.0261 weight: 0.7038 eval: 1.6155 min: 0.9236 max: 3.0261 weight: 0.5589 eval: 1.9541 min: 0.9236 max: 3.0261 weight: 0.7276 eval: 1.5600 min: 0.9236 max: 3.0261 weight: 0.5795 eval: 1.9060 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.6813 eval: 1.6680 min: 0.9236 max: 3.0261 weight: 0.7233 eval: 1.5700 min: 0.9236 max: 3.0261 weight: 0.5068 eval: 2.0758 min: 0.9236 max: 3.0261 weight: 0.4726 eval: 2.1557 min: 0.9236 max: 3.0261 weight: 0.5656 eval: 1.9383 min: 0.9236 max: 3.0261 weight: 0.7430 eval: 1.5239 min: 0.9236 max: 3.0261 weight: 0.6842 eval: 1.6612 min: 0.9236 max: 3.0261 weight: 0.8060 eval: 1.3767 min: 0.9236 max: 3.0261 weight: 0.9348 eval: 1.0758 min: 0.9236 max: 3.0261 weight: 0.7058 eval: 1.6109 min: 0.9236 max: 3.0261 weight: 0.7507 eval: 1.5061 min: 0.9236 max: 3.0261 weight: 0.7357 eval: 1.5411 min: 0.9236 max: 3.0261 weight: 1.0000 eval: 0.9236 min: 0.9236 max: 3.0261 weight: 0.8321 eval: 1.3158 min: 0.9236 max: 3.0261 weight: 0.6140 eval: 1.8254 min: 0.9236 max: 3.0261 weight: 0.5534 eval: 1.9669 min: 0.9236 max: 3.0261 weight: 0.6761 eval: 1.6802 min: 0.9236 max: 3.0261 weight: 0.5970 eval: 1.8652 min: 0.9236 max: 3.0261 weight: 0.6819 eval: 1.6668 min: 0.9236 max: 3.0261 weight: 0.5964 eval: 1.8665 min: 0.9236 max: 3.0261 weight: 0.6673 eval: 1.7009 min: 0.9236 max: 3.0261 weight: 0.7108 eval: 1.5992 min: 0.9236 max: 3.0261 weight: 0.7061 eval: 1.6102 min: 0.9236 max: 3.0261 weight: 0.7173 eval: 1.5839 min: 0.9236 max: 3.0261 weight: 0.7043 eval: 1.6143 min: 0.9236 max: 3.0261 weight: 0.7295 eval: 1.5554 min: 0.9236 max: 3.0261 weight: 0.7273 eval: 1.5607 min: 0.9236 max: 3.0261 weight: 0.7008 eval: 1.6225 min: 0.9236 max: 3.0261 weight: 0.7173 eval: 1.5839 min: 0.9236 max: 3.0261 weight: 0.5052 eval: 2.0796 min: 0.9236 max: 3.0261 weight: 0.5365 eval: 2.0063 min: 0.9236 max: 3.0261 weight: 0.8709 eval: 1.2251 min: 0.9236 max: 3.0261 weight: 0.8000 eval: 1.3907 min: 0.9236 max: 3.0261 weight: 0.4683 eval: 2.1656 min: 0.9236 max: 3.0261 weight: 0.5067 eval: 2.0760 min: 0.9236 max: 3.0261 weight: 0.5092 eval: 2.0703 min: 0.9236 max: 3.0261 weight: 0.5051 eval: 2.0798 min: 0.9236 max: 3.0261 weight: 0.8325 eval: 1.3149 min: 0.9236 max: 3.0261 weight: 0.5922 eval: 1.8763 min: 0.9236 max: 3.0261 weight: 0.7318 eval: 1.5501 min: 0.9236 max: 3.0261 weight: 0.5859 eval: 1.8909 min: 0.9236 max: 3.0261 weight: 0.6234 eval: 1.8033 min: 0.9236 max: 3.0261 weight: 0.7348 eval: 1.5430 min: 0.9236 max: 3.0261 weight: 0.8593 eval: 1.2522 min: 0.9236 max: 3.0261 weight: 0.6801 eval: 1.6709 min: 0.9236 max: 3.0261 weight: 0.7963 eval: 1.3994 min: 0.9236 max: 3.0261 weight: 0.6184 eval: 1.8150 min: 0.9236 max: 3.0261 weight: 0.5790 eval: 1.9071 min: 0.9236 max: 3.0261 weight: 0.5949 eval: 1.8700 min: 0.9236 max: 3.0261 weight: 0.7049 eval: 1.6129 min: 0.9236 max: 3.0261 weight: 0.7888 eval: 1.4171 min: 0.9236 max: 3.0261 weight: 0.7422 eval: 1.5258 min: 0.9236 max: 3.0261 weight: 0.8912 eval: 1.1778 min: 0.9236 max: 3.0261 weight: 0.8478 eval: 1.2791 min: 0.9236 max: 3.0261 weight: 0.8580 eval: 1.2552 min: 0.9236 max: 3.0261 weight: 0.6638 eval: 1.7091 min: 0.9236 max: 3.0261 weight: 0.7602 eval: 1.4837 min: 0.9236 max: 3.0261 weight: 0.8905 eval: 1.1794 min: 0.9236 max: 3.0261 weight: 0.8681 eval: 1.2317 min: 0.9236 max: 3.0261 weight: 0.8843 eval: 1.1939 min: 0.9236 max: 3.0261 weight: 0.6788 eval: 1.6740 min: 0.9236 max: 3.0261 weight: 0.7711 eval: 1.4583 min: 0.9236 max: 3.0261 weight: 0.5950 eval: 1.8697 min: 0.9236 max: 3.0261 weight: 0.8709 eval: 1.2251 min: 0.9236 max: 3.0261 weight: 0.5434 eval: 1.9903 min: 0.9236 max: 3.0261 weight: 0.8000 eval: 1.3907 min: 0.9236 max: 3.0261 weight: 0.6801 eval: 1.6709 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8029 eval: 1.3841 min: 0.9236 max: 3.0261 weight: 0.8729 eval: 1.2206 min: 0.9236 max: 3.0261 weight: 0.9262 eval: 1.0961 min: 0.9236 max: 3.0261 weight: 0.8211 eval: 1.3415 min: 0.9236 max: 3.0261 weight: 0.8413 eval: 1.2944 min: 0.9236 max: 3.0261 weight: 0.5558 eval: 1.9614 min: 0.9236 max: 3.0261 weight: 0.6745 eval: 1.6841 min: 0.9236 max: 3.0261 weight: 0.6107 eval: 1.8330 min: 0.9236 max: 3.0261 weight: 0.6901 eval: 1.6475 min: 0.9236 max: 3.0261 weight: 0.5042 eval: 2.0820 min: 0.9236 max: 3.0261 weight: 0.7972 eval: 1.3973 min: 0.9236 max: 3.0261 weight: 0.8856 eval: 1.1908 min: 0.9236 max: 3.0261 weight: 0.6025 eval: 1.8521 min: 0.9236 max: 3.0261 weight: 0.5408 eval: 1.9964 min: 0.9236 max: 3.0261 weight: 0.5909 eval: 1.8794 min: 0.9236 max: 3.0261 weight: 0.5314 eval: 2.0182 min: 0.9236 max: 3.0261 weight: 0.6745 eval: 1.6841 min: 0.9236 max: 3.0261 weight: 0.4937 eval: 2.1064 min: 0.9236 max: 3.0261 weight: 0.5149 eval: 2.0568 min: 0.9236 max: 3.0261 weight: 0.5072 eval: 2.0750 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.4843 eval: 2.1283 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.9338 eval: 1.0782 min: 0.9236 max: 3.0261 weight: 0.9209 eval: 1.1084 min: 0.9236 max: 3.0261 weight: 0.9612 eval: 1.0143 min: 0.9236 max: 3.0261 weight: 0.9946 eval: 0.9361 min: 0.9236 max: 3.0261 weight: 0.7490 eval: 1.5100 min: 0.9236 max: 3.0261 weight: 0.5640 eval: 1.9420 min: 0.9236 max: 3.0261 weight: 0.5718 eval: 1.9238 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.8487 eval: 1.2771 min: 0.9236 max: 3.0261 weight: 0.6555 eval: 1.7284 min: 0.9236 max: 3.0261 weight: 0.4568 eval: 2.1926 min: 0.9236 max: 3.0261 weight: 0.4145 eval: 2.2914 min: 0.9236 max: 3.0261 weight: 0.6757 eval: 1.6812 min: 0.9236 max: 3.0261 weight: 0.4560 eval: 2.1945 min: 0.9236 max: 3.0261 weight: 0.5060 eval: 2.0776 min: 0.9236 max: 3.0261 weight: 0.4881 eval: 2.1194 min: 0.9236 max: 3.0261 weight: 0.5788 eval: 1.9075 min: 0.9236 max: 3.0261 weight: 0.5119 eval: 2.0639 min: 0.9236 max: 3.0261 weight: 0.6197 eval: 1.8121 min: 0.9236 max: 3.0261 weight: 0.8373 eval: 1.3036 min: 0.9236 max: 3.0261 weight: 0.6854 eval: 1.6585 min: 0.9236 max: 3.0261 weight: 0.7274 eval: 1.5604 min: 0.9236 max: 3.0261 weight: 0.6695 eval: 1.6957 min: 0.9236 max: 3.0261 weight: 0.8380 eval: 1.3021 min: 0.9236 max: 3.0261 weight: 0.6424 eval: 1.7590 min: 0.9236 max: 3.0261 weight: 0.8919 eval: 1.1760 min: 0.9236 max: 3.0261 weight: 0.6782 eval: 1.6753 min: 0.9236 max: 3.0261 weight: 0.6566 eval: 1.7259 min: 0.9236 max: 3.0261 weight: 0.6558 eval: 1.7276 min: 0.9236 max: 3.0261 weight: 0.5534 eval: 1.9669 min: 0.9236 max: 3.0261 weight: 0.5534 eval: 1.9669 min: 0.9236 max: 3.0261 weight: 0.5513 eval: 1.9719 min: 0.9236 max: 3.0261 weight: 0.5602 eval: 1.9511 min: 0.9236 max: 3.0261 weight: 0.5122 eval: 2.0631 min: 0.9236 max: 3.0261 weight: 0.7756 eval: 1.4478 min: 0.9236 max: 3.0261 weight: 0.8447 eval: 1.2865 min: 0.9236 max: 3.0261 weight: 0.6078 eval: 1.8398 min: 0.9236 max: 3.0261 Adding 5493 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -240.1802, CN propb: -240.1802 weights: 0.2404 constraints: 320 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 320 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 320 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 5173 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 5173 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 5493 # command: