# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0371/ # command:# Making conformation for sequence T0371 numbered 1 through 283 Created new target T0371 from T0371.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0371/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0371//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0371/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0371//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0371/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0371/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0371/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1j97A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1j97A expands to /projects/compbio/data/pdb/1j97.pdb.gz 1j97A:Bad short name: BE for alphabet: pdb_atoms Bad short name: F1 for alphabet: pdb_atoms Bad short name: F2 for alphabet: pdb_atoms Bad short name: F3 for alphabet: pdb_atoms # T0371 read from 1j97A/merged-good-all-a2m # 1j97A read from 1j97A/merged-good-all-a2m # adding 1j97A to template set # found chain 1j97A in template set Warning: unaligning (T0371)F18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1j97A)F12 Warning: unaligning (T0371)A20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1j97A)F12 T0371 11 :PKYKCIF 1j97A 3 :KKKKLIL # choosing archetypes in rotamer library T0371 21 :FGVLKTYN 1j97A 13 :DSTLVNNE T0371 61 :QLADSYHKLGL 1j97A 21 :TIDEIAREAGV T0371 76 :ADKI 1j97A 32 :EEEV T0371 83 :GMITKEYIDLKV 1j97A 36 :KKITKEAMEGKL T0371 103 :GTANSANYLVSD 1j97A 48 :NFEQSLRKRVSL T0371 115 :GIKM 1j97A 62 :DLPI T0371 130 :GEVNALVL 1j97A 66 :EKVEKAIK T0371 142 :GFNWFHDLNKTVNLLRKRTIPA 1j97A 74 :RITPTEGAEETIKELKNRGYVV T0371 164 :IVANT 1j97A 97 :VVSGG T0371 174 :L 1j97A 102 :F T0371 183 :IGGVATMIES 1j97A 103 :DIAVNKIKEK T0371 194 :LGRRFIR 1j97A 113 :LGLDYAF T0371 203 :K 1j97A 144 :K T0371 206 :SQMFMFAYDML 1j97A 145 :GEILEKIAKIE T0371 221 :EISKREILMVGDT 1j97A 156 :GINLEDTVAVGDG T0371 235 :HTDILGGNKFGLDTAL 1j97A 169 :ANDISMFKKAGLKIAF T0371 256 :TRIDD 1j97A 185 :CAKPI T0371 265 :IKST 1j97A 190 :LKEK T0371 272 :PTHICESA 1j97A 194 :ADICIEKR T0371 280 :VIEL 1j97A 203 :LREI Number of specific fragments extracted= 21 number of extra gaps= 0 total=21 Number of alignments=1 # 1j97A read from 1j97A/merged-good-all-a2m # found chain 1j97A in template set Warning: unaligning (T0371)F18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1j97A)F12 Warning: unaligning (T0371)A20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1j97A)F12 T0371 11 :PKYKCIF 1j97A 3 :KKKKLIL T0371 21 :FGVLKTYN 1j97A 13 :DSTLVNNE T0371 37 :TFDYLKAQ 1j97A 21 :TIDEIARE T0371 45 :GQ 1j97A 30 :GV T0371 59 :PEQLADSYHKLGLFSITAD 1j97A 32 :EEEVKKITKEAMEGKLNFE T0371 105 :ANSANYLV 1j97A 51 :QSLRKRVS T0371 123 :AIDDSNIGEVNALVL 1j97A 59 :LLKDLPIEKVEKAIK T0371 142 :GFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAI 1j97A 74 :RITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGL T0371 191 :ESI 1j97A 116 :DYA T0371 194 :LGRRFIRF 1j97A 130 :LTGDVEGE T0371 203 :KPDSQMFMFAYDMLRQKMEISKREILMVGDTLH 1j97A 138 :VLKENAKGEILEKIAKIEGINLEDTVAVGDGAN T0371 237 :DILGGNKFG 1j97A 171 :DISMFKKAG T0371 247 :DTALV 1j97A 180 :LKIAF T0371 256 :TRIDDAETK 1j97A 185 :CAKPILKEK T0371 272 :PTHICESA 1j97A 194 :ADICIEKR T0371 280 :VIEL 1j97A 203 :LREI Number of specific fragments extracted= 16 number of extra gaps= 0 total=37 Number of alignments=2 # 1j97A read from 1j97A/merged-good-all-a2m # found chain 1j97A in template set Warning: unaligning (T0371)F18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1j97A)F12 Warning: unaligning (T0371)A20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1j97A)F12 T0371 14 :KCIF 1j97A 6 :KLIL T0371 21 :FGVLKTYNGLLPGI 1j97A 13 :DSTLVNNETIDEIA T0371 42 :KAQG 1j97A 27 :REAG T0371 58 :SPEQLADSYHKLGLFSIT 1j97A 31 :VEEEVKKITKEAMEGKLN T0371 82 :SGMITKEYIDLK 1j97A 49 :FEQSLRKRVSLL T0371 125 :DDSNIGEVNALV 1j97A 61 :KDLPIEKVEKAI T0371 141 :EGFNWFHDLNKTVNLLRKRTIPAIVANTD 1j97A 73 :KRITPTEGAEETIKELKNRGYVVAVVSGG T0371 186 :VATMIESIL 1j97A 102 :FDIAVNKIK T0371 195 :GRRFIR 1j97A 135 :EGEVLK T0371 205 :DSQMFMFAYDML 1j97A 144 :KGEILEKIAKIE T0371 221 :EISKREILMVGDTLH 1j97A 156 :GINLEDTVAVGDGAN T0371 237 :DILGGNKFGLDTAL 1j97A 171 :DISMFKKAGLKIAF T0371 256 :TRIDDAET 1j97A 185 :CAKPILKE T0371 267 :STGIVPT 1j97A 193 :KADICIE T0371 274 :HICESAVIEL 1j97A 202 :DLREILKYIK Number of specific fragments extracted= 15 number of extra gaps= 0 total=52 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2c4nA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2c4nA expands to /projects/compbio/data/pdb/2c4n.pdb.gz 2c4nA:# T0371 read from 2c4nA/merged-good-all-a2m # 2c4nA read from 2c4nA/merged-good-all-a2m # adding 2c4nA to template set # found chain 2c4nA in template set Warning: unaligning (T0371)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c4nA)H16 Warning: unaligning (T0371)T26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c4nA)H16 T0371 12 :KYKCIFFDAFGVL 2c4nA 2 :TIKNVICDIDGVL T0371 27 :YNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGL 2c4nA 17 :DNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGV T0371 73 :SITADKIISSGMITKEYI 2c4nA 62 :DVPDSVFYTSAMATADFL T0371 91 :DLKV 2c4nA 81 :RQEG T0371 97 :GIVAYLGTANSANYLVSDGIKM 2c4nA 85 :KKAYVVGEGALIHELYKAGFTI T0371 122 :S 2c4nA 107 :T T0371 129 :IGEVNALVLLDDEGFN 2c4nA 108 :DVNPDFVIVGETRSYN T0371 146 :FHDLNKTVNLLRK 2c4nA 124 :WDMMHKAAYFVAN T0371 160 :TIPAIVANTDNTY 2c4nA 137 :GARFIATNPDTHG T0371 175 :TKTDVAIAI 2c4nA 150 :RGFYPACGA T0371 186 :VATMIESILGRRFIRFGKPDSQMFMFAYDML 2c4nA 159 :LCAGIEKISGRKPFYVGKPSPWIIRAALNKM T0371 221 :EISKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDD 2c4nA 190 :QAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDD T0371 265 :IKSTGIVPTHICES 2c4nA 230 :IDSMPFRPSWIYPS T0371 280 :VIEL 2c4nA 244 :VAEI Number of specific fragments extracted= 14 number of extra gaps= 1 total=66 Number of alignments=4 # 2c4nA read from 2c4nA/merged-good-all-a2m # found chain 2c4nA in template set Warning: unaligning (T0371)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c4nA)H16 Warning: unaligning (T0371)T26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c4nA)H16 T0371 12 :KYKCIFFDAFGVL 2c4nA 2 :TIKNVICDIDGVL T0371 27 :YNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGL 2c4nA 17 :DNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGV T0371 73 :SITADKIISSGMITKEYIDLK 2c4nA 62 :DVPDSVFYTSAMATADFLRRQ T0371 95 :DGGIVAYLGTANSANYLVSDGIKMLP 2c4nA 83 :EGKKAYVVGEGALIHELYKAGFTITD T0371 130 :GEVNALVLLDDEGFN 2c4nA 109 :VNPDFVIVGETRSYN T0371 146 :FHDLNKTVNLLRK 2c4nA 124 :WDMMHKAAYFVAN T0371 160 :TIPAIVANTDNTY 2c4nA 137 :GARFIATNPDTHG T0371 175 :TKTDVAIA 2c4nA 150 :RGFYPACG T0371 185 :GVATMIESILGRRFIRFGKPDSQMFMFAYDML 2c4nA 158 :ALCAGIEKISGRKPFYVGKPSPWIIRAALNKM T0371 221 :EISKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDDAETK 2c4nA 190 :QAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSM T0371 269 :GIVPTHICES 2c4nA 234 :PFRPSWIYPS T0371 280 :VIEL 2c4nA 244 :VAEI Number of specific fragments extracted= 12 number of extra gaps= 1 total=78 Number of alignments=5 # 2c4nA read from 2c4nA/merged-good-all-a2m # found chain 2c4nA in template set Warning: unaligning (T0371)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c4nA)H16 Warning: unaligning (T0371)T26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c4nA)H16 T0371 13 :YKCIFFDAFGVL 2c4nA 3 :IKNVICDIDGVL T0371 27 :YNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGL 2c4nA 17 :DNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGV T0371 73 :SITADKIISSGMITKEYIDLK 2c4nA 62 :DVPDSVFYTSAMATADFLRRQ T0371 95 :DGGIVAYLGTANSANYLVSDGIKMLP 2c4nA 83 :EGKKAYVVGEGALIHELYKAGFTITD T0371 130 :GEVNALVLLDDEGFN 2c4nA 109 :VNPDFVIVGETRSYN T0371 147 :HDLNKTVNLLRKRTIPAIVANTD 2c4nA 124 :WDMMHKAAYFVANGARFIATNPD T0371 173 :PLTKT 2c4nA 147 :THGRG T0371 179 :VAIAIGGVATMIESILGRRFIRFGKPDSQMFMFAYDML 2c4nA 152 :FYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKM T0371 221 :EISKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDDAETKIKSTGIVPTHICES 2c4nA 190 :QAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWIYPSVAEI Number of specific fragments extracted= 9 number of extra gaps= 1 total=87 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gfhA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2gfhA expands to /projects/compbio/data/pdb/2gfh.pdb.gz 2gfhA:Skipped atom 62, because occupancy 0.5 <= existing 0.500 in 2gfhA Skipped atom 66, because occupancy 0.500 <= existing 0.500 in 2gfhA Skipped atom 68, because occupancy 0.500 <= existing 0.500 in 2gfhA Skipped atom 70, because occupancy 0.500 <= existing 0.500 in 2gfhA Skipped atom 72, because occupancy 0.500 <= existing 0.500 in 2gfhA Skipped atom 74, because occupancy 0.500 <= existing 0.500 in 2gfhA Skipped atom 76, because occupancy 0.500 <= existing 0.500 in 2gfhA Skipped atom 78, because occupancy 0.500 <= existing 0.500 in 2gfhA Skipped atom 789, because occupancy 0.500 <= existing 0.500 in 2gfhA Skipped atom 793, because occupancy 0.500 <= existing 0.500 in 2gfhA Skipped atom 795, because occupancy 0.500 <= existing 0.500 in 2gfhA # T0371 read from 2gfhA/merged-good-all-a2m # 2gfhA read from 2gfhA/merged-good-all-a2m # adding 2gfhA to template set # found chain 2gfhA in template set Warning: unaligning (T0371)F18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gfhA)D12 Warning: unaligning (T0371)D19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gfhA)D12 Warning: unaligning (T0371)D95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gfhA)C67 Warning: unaligning (T0371)A100 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gfhA)C67 T0371 11 :PKYKCIF 2gfhA 4 :SRVRAVF T0371 20 :AFGVLKTYNGLL 2gfhA 13 :LDNTLIDTAGAS T0371 32 :PG 2gfhA 26 :RG T0371 59 :PEQLADSYHK 2gfhA 28 :MLEVIKLLQS T0371 69 :LGL 2gfhA 39 :YHY T0371 75 :T 2gfhA 42 :K T0371 77 :DKIISSGMITKEYI 2gfhA 43 :EEAEIICDKVQVKL T0371 91 :DLKV 2gfhA 58 :KECF T0371 101 :Y 2gfhA 68 :I T0371 102 :LGTANSANYLVSD 2gfhA 71 :VRTSHWEEAIQET T0371 115 :GI 2gfhA 85 :GG T0371 122 :SAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYP 2gfhA 87 :ADNRKLAEECYFLWKSTRLQHMILADDVKAMLTELRKEVRLLLLTNGDRQTQ T0371 175 :TKTDVAIA 2gfhA 139 :REKIEACA T0371 186 :VATMIESILGRRFIRFGKPDSQMFMFAYDML 2gfhA 147 :CQSYFDAIVIGGEQKEEKPAPSIFYHCCDLL T0371 221 :EISKREILMVGDTLHTDILGGNKFGLD 2gfhA 178 :GVQPGDCVMVGDTLETDIQGGLNAGLK T0371 248 :TALVL 2gfhA 206 :TVWIN T0371 254 :GNTRIDD 2gfhA 211 :KSGRVPL T0371 267 :STGIVPTHICES 2gfhA 218 :TSSPMPHYMVSS T0371 280 :VIEL 2gfhA 230 :VLEL Number of specific fragments extracted= 19 number of extra gaps= 1 total=106 Number of alignments=7 # 2gfhA read from 2gfhA/merged-good-all-a2m # found chain 2gfhA in template set Warning: unaligning (T0371)F18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gfhA)D12 Warning: unaligning (T0371)D19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gfhA)D12 Warning: unaligning (T0371)F72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gfhA)C67 Warning: unaligning (T0371)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gfhA)C67 T0371 10 :LPKYKCIF 2gfhA 3 :LSRVRAVF T0371 20 :AFGVLKTYNGLL 2gfhA 13 :LDNTLIDTAGAS T0371 32 :PGIENTFDYLKAQ 2gfhA 26 :RGMLEVIKLLQSK T0371 54 :DASRSPEQLADSYHKL 2gfhA 40 :HYKEEAEIICDKVQVK T0371 70 :GL 2gfhA 60 :CF T0371 99 :VAYLGTANSANYLVSD 2gfhA 68 :ITDVRTSHWEEAIQET T0371 119 :L 2gfhA 84 :K T0371 121 :VSAIDDSNIGEVNAL 2gfhA 85 :GGADNRKLAEECYFL T0371 136 :VLLDDEGFNWFHDLNKTVNLLRKR 2gfhA 101 :KSTRLQHMILADDVKAMLTELRKE T0371 161 :IPAIVANTDNTYPLTKTDVAIAIGGVATMI 2gfhA 125 :VRLLLLTNGDRQTQREKIEACACQSYFDAI T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 2gfhA 155 :VIGGEQKEEKPAPSIFYHCCDLL T0371 221 :EISKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRID 2gfhA 178 :GVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVP T0371 266 :KSTGIVPTHICES 2gfhA 217 :LTSSPMPHYMVSS T0371 280 :VIEL 2gfhA 230 :VLEL Number of specific fragments extracted= 14 number of extra gaps= 1 total=120 Number of alignments=8 # 2gfhA read from 2gfhA/merged-good-all-a2m # found chain 2gfhA in template set Warning: unaligning (T0371)F18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gfhA)D12 Warning: unaligning (T0371)D19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gfhA)D12 Warning: unaligning (T0371)F72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gfhA)C67 Warning: unaligning (T0371)L102 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gfhA)C67 T0371 12 :KYKCIF 2gfhA 5 :RVRAVF T0371 20 :AFGVLKTYNGLLPGIENTFDYLK 2gfhA 13 :LDNTLIDTAGASRRGMLEVIKLL T0371 59 :PEQLADSYHKLGL 2gfhA 49 :CDKVQVKLSKECF T0371 103 :GTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 2gfhA 68 :ITDVRTSHWEEAIQETKGGADNRKLAEECYFLWKSTRLQHMILADDVKAMLTELRKEVRLLLLTNG T0371 182 :AIGGVATMIESIL 2gfhA 134 :DRQTQREKIEACA T0371 195 :GRRFIRFGKPDSQMFMFAYDML 2gfhA 156 :IGGEQKEEKPAPSIFYHCCDLL T0371 221 :EISKREILMVGDTLHTDILGGNKFGLD 2gfhA 178 :GVQPGDCVMVGDTLETDIQGGLNAGLK T0371 248 :TALVLTGNTRID 2gfhA 206 :TVWINKSGRVPL T0371 263 :TKIKSTGIVPTHICESA 2gfhA 218 :TSSPMPHYMVSSVLELP Number of specific fragments extracted= 9 number of extra gaps= 1 total=129 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1s2oA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0371 read from 1s2oA/merged-good-all-a2m # 1s2oA read from 1s2oA/merged-good-all-a2m # found chain 1s2oA in training set T0371 14 :KCIFFDAFGVLKTYN 1s2oA 4 :LLLISDLDNTWVGDQ T0371 32 :PGIENTFDYLKAQ 1s2oA 19 :QALEHLQEYLGDR T0371 46 :QDYYIVT 1s2oA 35 :FYLAYAT T0371 56 :SRSPEQLADSYHKLGLFSIT 1s2oA 42 :GRSYHSARELQKQVGLMEPD T0371 78 :KIISSGM 1s2oA 62 :YWLTAVG T0371 97 :GIVAY 1s2oA 69 :SEIYH T0371 102 :LGTANSANYLVS 1s2oA 76 :GLDQHWADYLSE T0371 115 :GIKM 1s2oA 88 :HWQR T0371 122 :SAIDDSNI 1s2oA 92 :DILQAIAD T0371 134 :A 1s2oA 117 :I T0371 136 :VLLDDEGFNW 1s2oA 118 :SYHLDPQACP T0371 147 :HDLNKTVNLLRKRTIPA 1s2oA 128 :TVIDQLTEMLKETGIPV T0371 164 :IVANTDNTY 1s2oA 146 :VIFSSGKDV T0371 175 :TKTDVAIA 1s2oA 155 :DLLPQRSN T0371 203 :K 1s2oA 163 :K T0371 206 :SQMFMFAYDML 1s2oA 164 :GNATQYLQQHL T0371 221 :EISKREILMVGDT 1s2oA 175 :AMEPSQTLVCGDS T0371 235 :HTDILG 1s2oA 188 :GNDIGL T0371 242 :NKFGLDTALVL 1s2oA 194 :FETSARGVIVR T0371 256 :TRIDDAETKIKST 1s2oA 205 :NAQPELLHWYDQW T0371 269 :G 1s2oA 220 :S T0371 272 :PTHICE 1s2oA 221 :RHYRAQ Number of specific fragments extracted= 22 number of extra gaps= 0 total=151 Number of alignments=10 # 1s2oA read from 1s2oA/merged-good-all-a2m # found chain 1s2oA in training set T0371 14 :KCIFFDAFGVLKTYN 1s2oA 4 :LLLISDLDNTWVGDQ T0371 32 :PGIENTFDYLKAQ 1s2oA 19 :QALEHLQEYLGDR T0371 45 :GQDYYIVTNDA 1s2oA 34 :NFYLAYATGRS T0371 59 :PEQLADSYHKLGLFSITA 1s2oA 45 :YHSARELQKQVGLMEPDY T0371 78 :KIISSGMITKE 1s2oA 63 :WLTAVGSEIYH T0371 90 :IDLKVDG 1s2oA 81 :WADYLSE T0371 101 :YLGTANSANYLVSDG 1s2oA 88 :HWQRDILQAIADGFE T0371 116 :IKMLPVSAIDDSN 1s2oA 104 :LKPQSPLEQNPWK T0371 135 :LVLLDDEGFN 1s2oA 117 :ISYHLDPQAC T0371 146 :FHDLNKTVNLLRKRTIPAIVANTDNTYP 1s2oA 127 :PTVIDQLTEMLKETGIPVQVIFSSGKDV T0371 199 :IRFGK 1s2oA 157 :LPQRS T0371 208 :MFMFAYDMLRQKMEISKREILMVGDT 1s2oA 162 :NKGNATQYLQQHLAMEPSQTLVCGDS T0371 235 :HTDILGG 1s2oA 188 :GNDIGLF T0371 243 :KFGLDTALVLTGN 1s2oA 195 :ETSARGVIVRNAQ T0371 259 :DDAETKIKSTGIVPTHICES 1s2oA 208 :PELLHWYDQWGDSRHYRAQS Number of specific fragments extracted= 15 number of extra gaps= 0 total=166 Number of alignments=11 # 1s2oA read from 1s2oA/merged-good-all-a2m # found chain 1s2oA in training set T0371 15 :CIFFDAFGVLKTYNGLLP 1s2oA 5 :LLISDLDNTWVGDQQALE T0371 36 :NTFDYLKAQGQDYYIVTNDA 1s2oA 23 :HLQEYLGDRRGNFYLAYATG T0371 57 :RSPEQLADSYHKLGLFSIT 1s2oA 43 :RSYHSARELQKQVGLMEPD T0371 84 :MITKEYIDLKV 1s2oA 79 :QHWADYLSEHW T0371 103 :GTANSANYLVSDG 1s2oA 90 :QRDILQAIADGFE T0371 116 :IKMLP 1s2oA 104 :LKPQS T0371 125 :DDSNIGEVNALVLLDDEGFNWFHDLNK 1s2oA 109 :PLEQNPWKISYHLDPQACPTVIDQLTE T0371 155 :LLRKRTIPA 1s2oA 136 :MLKETGIPV T0371 170 :NTYPLTK 1s2oA 145 :QVIFSSG T0371 179 :VAIAIGGVATMIE 1s2oA 156 :LLPQRSNKGNATQ T0371 211 :FAYDML 1s2oA 169 :YLQQHL T0371 221 :EISKREILMVGDTLH 1s2oA 175 :AMEPSQTLVCGDSGN T0371 237 :D 1s2oA 190 :D T0371 239 :LGGNKFGLDTALV 1s2oA 191 :IGLFETSARGVIV T0371 254 :GNTRIDDAE 1s2oA 204 :RNAQPELLH T0371 263 :TKIKSTGIVPT 1s2oA 216 :QWGDSRHYRAQ Number of specific fragments extracted= 16 number of extra gaps= 0 total=182 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wr8A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0371 read from 1wr8A/merged-good-all-a2m # 1wr8A read from 1wr8A/merged-good-all-a2m # found chain 1wr8A in training set Warning: unaligning (T0371)K12 because first residue in template chain is (1wr8A)K2 T0371 13 :YKCIFFDAFGVLKTYNGLL 1wr8A 3 :IKAISIDIDGTITYPNRMI T0371 32 :PGIENTFDYLKAQGQDYYIVT 1wr8A 23 :EKALEAIRRAESLGIPIMLVT T0371 56 :SRSPEQLADSYHKLGL 1wr8A 44 :GNTVQFAEAASILIGT T0371 73 :SIT 1wr8A 60 :SGP T0371 79 :IISSGMITK 1wr8A 63 :VVAEDGGAI T0371 93 :KVDGGIVAYLG 1wr8A 72 :SYKKKRIFLAS T0371 104 :TANSANYLVSD 1wr8A 86 :EWILWNEIRKR T0371 115 :GIKM 1wr8A 99 :NART T0371 126 :DSNIGEVNALVLLDDEGFN 1wr8A 103 :SYTMPDRRAGLVIMRETIN T0371 146 :FHDLNKTVN 1wr8A 122 :VETVREIIN T0371 158 :KRTI 1wr8A 131 :ELNL T0371 175 :TKTDVAIAIG 1wr8A 135 :NLVAVDSGFA T0371 196 :RRFIRFGK 1wr8A 147 :VKKPWINK T0371 206 :SQMFMFAYDML 1wr8A 155 :GSGIEKASEFL T0371 221 :EISKREILMVGDT 1wr8A 166 :GIKPKEVAHVGDG T0371 235 :HTDILGGNKFG 1wr8A 179 :ENDLDAFKVVG T0371 248 :TALVL 1wr8A 190 :YKVAV T0371 254 :GN 1wr8A 195 :AQ T0371 257 :RIDDAETK 1wr8A 197 :APKILKEN T0371 272 :PTHICES 1wr8A 205 :ADYVTKK Number of specific fragments extracted= 20 number of extra gaps= 0 total=202 Number of alignments=13 # 1wr8A read from 1wr8A/merged-good-all-a2m # found chain 1wr8A in training set Warning: unaligning (T0371)K12 because first residue in template chain is (1wr8A)K2 T0371 13 :YKCIFFDAFGVLKTYNGLL 1wr8A 3 :IKAISIDIDGTITYPNRMI T0371 32 :PGIENTFDYLKAQGQDYYIVTNDA 1wr8A 23 :EKALEAIRRAESLGIPIMLVTGNT T0371 59 :PEQLADSYHKLGLF 1wr8A 47 :VQFAEAASILIGTS T0371 74 :I 1wr8A 61 :G T0371 77 :DKIISSGMIT 1wr8A 62 :PVVAEDGGAI T0371 93 :KVDGGIVAYLGTA 1wr8A 72 :SYKKKRIFLASMD T0371 106 :NSANYLVSD 1wr8A 88 :ILWNEIRKR T0371 115 :GIKMLP 1wr8A 99 :NARTSY T0371 128 :NIGEVNALVLLDDEGFN 1wr8A 105 :TMPDRRAGLVIMRETIN T0371 146 :FHDLNKTVN 1wr8A 122 :VETVREIIN T0371 158 :KRT 1wr8A 131 :ELN T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1wr8A 143 :FAIHVKKPWINKGSGIEKASEFL T0371 221 :EISKREILMVGDT 1wr8A 166 :GIKPKEVAHVGDG T0371 235 :HTDILGGNKFG 1wr8A 179 :ENDLDAFKVVG T0371 247 :DTALV 1wr8A 190 :YKVAV T0371 255 :NTRIDDAETK 1wr8A 195 :AQAPKILKEN T0371 272 :PTHICES 1wr8A 205 :ADYVTKK Number of specific fragments extracted= 17 number of extra gaps= 0 total=219 Number of alignments=14 # 1wr8A read from 1wr8A/merged-good-all-a2m # found chain 1wr8A in training set Warning: unaligning (T0371)K12 because first residue in template chain is (1wr8A)K2 T0371 13 :YKCIFFDAFGVLKTYNG 1wr8A 3 :IKAISIDIDGTITYPNR T0371 30 :LLPGIENTFDYLKAQGQDYYIVTNDA 1wr8A 21 :IHEKALEAIRRAESLGIPIMLVTGNT T0371 59 :PEQLADSYHKLGL 1wr8A 47 :VQFAEAASILIGT T0371 72 :FSITA 1wr8A 81 :ASMDE T0371 105 :ANSANYLVSD 1wr8A 87 :WILWNEIRKR T0371 115 :GIKML 1wr8A 99 :NARTS T0371 127 :SNIGEVNALVLLDDEGFN 1wr8A 104 :YTMPDRRAGLVIMRETIN T0371 146 :FHDLNKTVN 1wr8A 122 :VETVREIIN T0371 158 :KRT 1wr8A 131 :ELN T0371 167 :NTDNTYPLTKT 1wr8A 141 :SGFAIHVKKPW T0371 181 :IAI 1wr8A 152 :INK T0371 206 :SQMFMFAYDML 1wr8A 155 :GSGIEKASEFL T0371 221 :EISKREILMVGDTLH 1wr8A 166 :GIKPKEVAHVGDGEN T0371 237 :DILGGNKFGLDTA 1wr8A 181 :DLDAFKVVGYKVA T0371 251 :V 1wr8A 194 :V Number of specific fragments extracted= 15 number of extra gaps= 0 total=234 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qyiA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1qyiA expands to /projects/compbio/data/pdb/1qyi.pdb.gz 1qyiA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0371 read from 1qyiA/merged-good-all-a2m # 1qyiA read from 1qyiA/merged-good-all-a2m # adding 1qyiA to template set # found chain 1qyiA in template set T0371 14 :KCIFFDAFGVLKTY 1qyiA 2 :KKILFDVDGVFLSE T0371 28 :NGLL 1qyiA 45 :ETLT T0371 32 :PGIEN 1qyiA 50 :NDIQD T0371 37 :TFDYLKAQG 1qyiA 65 :ILNKLKSLG T0371 56 :SRSPEQLADSYH 1qyiA 95 :KLSHDEIEAFMY T0371 68 :KLG 1qyiA 114 :KLQ T0371 71 :L 1qyiA 126 :F T0371 73 :SITADKI 1qyiA 127 :NLNEQLP T0371 87 :KEYIDLKVDG 1qyiA 134 :LQFLDNVKVG T0371 130 :GEVNALVLLDDEGFN 1qyiA 189 :KLYEDVEKKIARTTF T0371 145 :WFHDLNKTVNLLRKRTIPA 1qyiA 216 :PVDEVKVLLNDLKGAGFEL T0371 164 :IVANTD 1qyiA 236 :IATGRP T0371 176 :KTDVAIAIG 1qyiA 253 :GLLPYFEAD T0371 185 :GVATMIESILGRRF 1qyiA 264 :ATASDVLEAENMYP T0371 199 :IRFGKPDSQMFMFAYD 1qyiA 280 :RPLGKPNPFSYIAALY T0371 221 :EISKRE 1qyiA 296 :GNNRDK T0371 227 :ILMVGDT 1qyiA 318 :VFIVGDS T0371 235 :HTDILGGNKFGLDTALVLTGNTR 1qyiA 325 :LADLLSAQKIGATFIGTLTGLKG T0371 259 :DDAETKIKSTG 1qyiA 348 :KDAAGELEAHH T0371 272 :PTHICES 1qyiA 359 :ADYVINH T0371 280 :VIEL 1qyiA 366 :LGEL Number of specific fragments extracted= 21 number of extra gaps= 0 total=255 Number of alignments=16 # 1qyiA read from 1qyiA/merged-good-all-a2m # found chain 1qyiA in template set T0371 14 :KCIFFDAFGVLKT 1qyiA 2 :KKILFDVDGVFLS T0371 27 :YNGLL 1qyiA 44 :WETLT T0371 32 :PGIENTFDYLKA 1qyiA 50 :NDIQDIRNRIFQ T0371 61 :QLADSYHKLGL 1qyiA 64 :KILNKLKSLGL T0371 73 :SITADKIISSGMITKE 1qyiA 75 :NSNWDMLFIVFSIHLI T0371 89 :YIDLKVDGG 1qyiA 136 :FLDNVKVGK T0371 101 :YLGTANSANYLVSD 1qyiA 145 :NNIYAALEEFATTE T0371 116 :IKMLPVSAIDDSNI 1qyiA 159 :LHVSDATLFSLKGA T0371 130 :GEVNALVLLDDEGFN 1qyiA 189 :KLYEDVEKKIARTTF T0371 145 :WFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAIGGVA 1qyiA 216 :PVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYF T0371 188 :TMI 1qyiA 261 :DFI T0371 194 :LGRRFIR 1qyiA 264 :ATASDVL T0371 201 :FGKPDSQMFMFAYD 1qyiA 282 :LGKPNPFSYIAALY T0371 221 :EISKRE 1qyiA 296 :GNNRDK T0371 227 :ILMVGDTLH 1qyiA 318 :VFIVGDSLA T0371 237 :DILGGNKFGLDTALVLTGNTR 1qyiA 327 :DLLSAQKIGATFIGTLTGLKG T0371 259 :DDAETKIKSTG 1qyiA 348 :KDAAGELEAHH T0371 272 :PTHICES 1qyiA 359 :ADYVINH T0371 280 :VIEL 1qyiA 366 :LGEL Number of specific fragments extracted= 19 number of extra gaps= 0 total=274 Number of alignments=17 # 1qyiA read from 1qyiA/merged-good-all-a2m # found chain 1qyiA in template set T0371 14 :KCIFFDAFGVLKTYNGLLPGIENTFDYLK 1qyiA 2 :KKILFDVDGVFLSEERCFDVSALTVYELL T0371 56 :SRSPEQLAD 1qyiA 46 :TLTDNDIQD T0371 65 :SYHKLGL 1qyiA 68 :KLKSLGL T0371 73 :SITADKIISSGMITKEYIDLK 1qyiA 75 :NSNWDMLFIVFSIHLIDILKK T0371 103 :GTANSANYLVSDGIKMLPVS 1qyiA 96 :LSHDEIEAFMYQDEPVELKL T0371 123 :AIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTD 1qyiA 194 :VEKKIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGR T0371 182 :AIGGVATMIESIL 1qyiA 241 :PYTETVVPFENLG T0371 195 :GRRFIRFGKPDSQMFMFAYD 1qyiA 276 :YPQARPLGKPNPFSYIAALY T0371 220 :ME 1qyiA 310 :DN T0371 222 :ISKREILMVGDTLH 1qyiA 313 :VNKDDVFIVGDSLA T0371 237 :DILGGNKFGLDTALVLTGNTRIDDAE 1qyiA 327 :DLLSAQKIGATFIGTLTGLKGKDAAG T0371 264 :KIKSTGIVPTHICESAV 1qyiA 355 :EAHHADYVINHLGELRG Number of specific fragments extracted= 12 number of extra gaps= 0 total=286 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rqlA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rqlA expands to /projects/compbio/data/pdb/1rql.pdb.gz 1rqlA:# T0371 read from 1rqlA/merged-good-all-a2m # 1rqlA read from 1rqlA/merged-good-all-a2m # adding 1rqlA to template set # found chain 1rqlA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1rqlA)K5 T0371 13 :YKCIFFDAFGVLKTYNGLL 1rqlA 6 :IEAVIFDWAGTTVDYGCFA T0371 59 :PEQLADSYHKLGL 1rqlA 26 :LEVFMEIFHKRGV T0371 73 :SITADKIISS 1rqlA 39 :AITAEEARKP T0371 83 :GMITKEYI 1rqlA 54 :IDHVRALT T0371 103 :GTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1rqlA 62 :EMPRIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINAVKEVIASLRERGIKIGSTTG T0371 174 :LTKTDVAI 1rqlA 128 :YTREMMDI T0371 186 :VATMIES 1rqlA 136 :VAKEAAL T0371 195 :GRRFIRFGKPDSQMFMFAYDML 1rqlA 152 :TPDDVPAGRPYPWMCYKNAMEL T0371 221 :EI 1rqlA 174 :GV T0371 223 :SKREILMVGDT 1rqlA 177 :PMNHMIKVGDT T0371 235 :HTDILGGNKFGLDTALVLTGNTR 1rqlA 188 :VSDMKEGRNAGMWTVGVILGSSE T0371 258 :IDDAETKIKSTG 1rqlA 230 :IEVVRNRFVENG T0371 272 :PTHICES 1rqlA 242 :AHFTIET T0371 280 :VIEL 1rqlA 249 :MQEL Number of specific fragments extracted= 14 number of extra gaps= 0 total=300 Number of alignments=19 # 1rqlA read from 1rqlA/merged-good-all-a2m # found chain 1rqlA in template set Warning: unaligning (T0371)P11 because first residue in template chain is (1rqlA)K5 T0371 13 :YKCIFFDAFGVLKTYNGL 1rqlA 6 :IEAVIFDWAGTTVDYGCF T0371 57 :RSPEQLADSYHKLGL 1rqlA 24 :APLEVFMEIFHKRGV T0371 73 :SITADKIISSG 1rqlA 39 :AITAEEARKPM T0371 84 :MITKEYI 1rqlA 51 :LLKIDHV T0371 99 :VAYLGTANSANYLVSDGIKMLPVSAIDDSN 1rqlA 58 :RALTEMPRIASEWNRVFRQLPTEADIQEMY T0371 130 :GEVNALVL 1rqlA 88 :EEFEEILF T0371 138 :LDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAIGGVA 1rqlA 97 :ILPRYASPINAVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQGYK T0371 188 :TMI 1rqlA 148 :DFL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1rqlA 151 :VTPDDVPAGRPYPWMCYKNAMEL T0371 221 :EI 1rqlA 174 :GV T0371 223 :SKREILMVGDT 1rqlA 177 :PMNHMIKVGDT T0371 235 :HTDILGGNKFGLDTALVLTGNTR 1rqlA 188 :VSDMKEGRNAGMWTVGVILGSSE T0371 258 :IDDAETKIKSTG 1rqlA 230 :IEVVRNRFVENG T0371 272 :PTHICES 1rqlA 242 :AHFTIET T0371 280 :VIEL 1rqlA 249 :MQEL Number of specific fragments extracted= 15 number of extra gaps= 0 total=315 Number of alignments=20 # 1rqlA read from 1rqlA/merged-good-all-a2m # found chain 1rqlA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1rqlA)K5 T0371 13 :YKCIFFDAFGVLKTYNGLLP 1rqlA 6 :IEAVIFDWAGTTVDYGCFAP T0371 59 :PEQLADSYHKLGL 1rqlA 26 :LEVFMEIFHKRGV T0371 73 :SITADKII 1rqlA 39 :AITAEEAR T0371 81 :SSGMITKEYI 1rqlA 52 :LKIDHVRALT T0371 103 :GTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1rqlA 62 :EMPRIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINAVKEVIASLRERGIKIGSTTG T0371 182 :AIGGVATMIESIL 1rqlA 128 :YTREMMDIVAKEA T0371 195 :GRRFIRFGKPDSQMFMFAYDML 1rqlA 152 :TPDDVPAGRPYPWMCYKNAMEL T0371 221 :EI 1rqlA 174 :GV T0371 223 :SKREILMVGDTLH 1rqlA 177 :PMNHMIKVGDTVS T0371 237 :DILGGNKFGLDTALVLTG 1rqlA 190 :DMKEGRNAGMWTVGVILG T0371 255 :NTRIDDAE 1rqlA 212 :GLTEEEVE T0371 265 :IKSTGIVPTHICESAV 1rqlA 239 :ENGAHFTIETMQELES Number of specific fragments extracted= 12 number of extra gaps= 0 total=327 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ek1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ek1A expands to /projects/compbio/data/pdb/1ek1.pdb.gz 1ek1A:# T0371 read from 1ek1A/merged-good-all-a2m # 1ek1A read from 1ek1A/merged-good-all-a2m # adding 1ek1A to template set # found chain 1ek1A in template set Warning: unaligning (T0371)D260 because of BadResidue code BAD_PEPTIDE in next template residue (1ek1A)P369 Warning: unaligning (T0371)A261 because of BadResidue code BAD_PEPTIDE at template residue (1ek1A)P369 T0371 32 :PGIENTFDYLKAQGQDYYIVTNDASRS 1ek1A 103 :RPMLQAAIALKKKGFTTCIVTNNWLDD T0371 59 :PEQLADSYHKL 1ek1A 136 :LAQMMCELSQH T0371 71 :L 1ek1A 147 :F T0371 77 :DKIISS 1ek1A 148 :DFLIES T0371 83 :GMITKEYIDLKVD 1ek1A 166 :YNFLLDTLKAKPN T0371 97 :GIVAYLGTANSANYLVSDGIKMLPVSAIDDSNI 1ek1A 179 :EVVFLDDFGSNLKPARDMGMVTILVHNTASALR T0371 143 :FNWFH 1ek1A 267 :ESWFS T0371 152 :TVNLLRKRTIPAIVANT 1ek1A 275 :QIPALAQAGFRVLAIDM T0371 169 :DNT 1ek1A 296 :DSS T0371 174 :LTKTDVAIA 1ek1A 299 :SPPEIEEYA T0371 186 :VATMIES 1ek1A 308 :MELLCKE T0371 209 :FMFAYDML 1ek1A 315 :MVTFLDKL T0371 221 :EI 1ek1A 323 :GI T0371 225 :REILMVGDT 1ek1A 325 :PQAVFIGHD T0371 235 :HTDILGGNKF 1ek1A 334 :WAGVMVWNMA T0371 246 :LD 1ek1A 350 :VR T0371 248 :TALVLTGNTRID 1ek1A 353 :VASLNTPFMPPD T0371 262 :ETKIKSTG 1ek1A 370 :MKVIRSIP Number of specific fragments extracted= 18 number of extra gaps= 1 total=345 Number of alignments=22 # 1ek1A read from 1ek1A/merged-good-all-a2m # found chain 1ek1A in template set Warning: unaligning (T0371)K14 because first residue in template chain is (1ek1A)R4 Warning: unaligning (T0371)R257 because of BadResidue code BAD_PEPTIDE in next template residue (1ek1A)P369 Warning: unaligning (T0371)I258 because of BadResidue code BAD_PEPTIDE at template residue (1ek1A)P369 T0371 15 :CIFFDAFGVLKT 1ek1A 5 :VAAFDLDGVLAL T0371 27 :YNGLL 1ek1A 97 :AARSI T0371 32 :PGIENTFDYLKAQGQDYYIVTNDASRS 1ek1A 103 :RPMLQAAIALKKKGFTTCIVTNNWLDD T0371 59 :PEQLADSYHKL 1ek1A 136 :LAQMMCELSQH T0371 73 :SIT 1ek1A 155 :QVG T0371 76 :ADKII 1ek1A 162 :EPQIY T0371 84 :MITKEYIDLK 1ek1A 167 :NFLLDTLKAK T0371 95 :DGGIVAYLGTANSANYLVSDGIKMLPVSAIDDSNI 1ek1A 177 :PNEVVFLDDFGSNLKPARDMGMVTILVHNTASALR T0371 130 :GEVNALVLLDDEGFNW 1ek1A 233 :NDVSHGYVTVKPGIRL T0371 160 :TIPAIVANTDNTYP 1ek1A 255 :SGPALCLCHGFPES T0371 180 :AIAIGGVATMIESI 1ek1A 269 :WFSWRYQIPALAQA T0371 199 :IR 1ek1A 306 :YA T0371 209 :FMFAYDML 1ek1A 308 :MELLCKEM T0371 217 :RQKMEIS 1ek1A 319 :LDKLGIP T0371 226 :EILMVGDTLH 1ek1A 326 :QAVFIGHDWA T0371 237 :DILGGNKF 1ek1A 336 :GVMVWNMA T0371 245 :GLDTALVLT 1ek1A 349 :RVRAVASLN T0371 254 :GNT 1ek1A 365 :PDV T0371 259 :DDAETKI 1ek1A 370 :MKVIRSI Number of specific fragments extracted= 19 number of extra gaps= 1 total=364 Number of alignments=23 # 1ek1A read from 1ek1A/merged-good-all-a2m # found chain 1ek1A in template set Warning: unaligning (T0371)K14 because first residue in template chain is (1ek1A)R4 Warning: unaligning (T0371)L31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ek1A)G48 Warning: unaligning (T0371)N106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ek1A)G48 T0371 15 :CIFFDAFGVLKT 1ek1A 5 :VAAFDLDGVLAL T0371 29 :GL 1ek1A 17 :PS T0371 107 :SANYLVSDGIKMLPVS 1ek1A 49 :PTEQLMKGKITFSQWV T0371 127 :SNIG 1ek1A 91 :IFSQ T0371 139 :DDEGFNWFHDLNKTVNLLRKRTIPAIVANTD 1ek1A 95 :AMAARSINRPMLQAAIALKKKGFTTCIVTNN T0371 173 :PLTKTDVAIAIGGVATMIESIL 1ek1A 126 :WLDDGDKRDSLAQMMCELSQHF T0371 195 :GRRFIRFGKPDSQMFMFAYDML 1ek1A 152 :ESCQVGMIKPEPQIYNFLLDTL T0371 221 :EISKREILMVGDTLH 1ek1A 174 :KAKPNEVVFLDDFGS T0371 237 :DILGGNKFGLD 1ek1A 189 :NLKPARDMGMV Number of specific fragments extracted= 9 number of extra gaps= 0 total=373 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nnlA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0371 read from 1nnlA/merged-good-all-a2m # 1nnlA read from 1nnlA/merged-good-all-a2m # found chain 1nnlA in training set Warning: unaligning (T0371)E4 because first residue in template chain is (1nnlA)S5 Warning: unaligning (T0371)I79 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1nnlA)P57 Warning: unaligning (T0371)S122 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1nnlA)P57 T0371 5 :SFKSLLPKYKCIFFDAFGVLKTYNG 1nnlA 6 :ELRKLFYSADAVCFDVDSTVIREEG T0371 59 :PEQLADS 1nnlA 31 :IDELAKI T0371 69 :LGL 1nnlA 38 :CGV T0371 76 :ADK 1nnlA 41 :EDA T0371 123 :AIDDSNI 1nnlA 58 :FKAALTE T0371 130 :GEVNALV 1nnlA 74 :EQVQRLI T0371 139 :DDEGFNWFHDLNKTVNLLRKRTIPA 1nnlA 81 :AEQPPHLTPGIRELVSRLQERNVQV T0371 164 :IVANT 1nnlA 107 :LISGG T0371 186 :VATMIESILGRRFIR 1nnlA 112 :FRSIVEHVASKLNIP T0371 207 :QMFMFAYDMLRQKM 1nnlA 156 :GGKGKVIKLLKEKF T0371 223 :SKREILMVGDT 1nnlA 170 :HFKKIIMIGDG T0371 235 :HTDILG 1nnlA 181 :ATDMEA T0371 244 :F 1nnlA 187 :C T0371 245 :GLDTALVLTGNTRIDDAETK 1nnlA 189 :PADAFIGFGGNVIRQQVKDN T0371 272 :PTHICES 1nnlA 209 :AKWYITD T0371 280 :VIEL 1nnlA 216 :FVEL Number of specific fragments extracted= 16 number of extra gaps= 0 total=389 Number of alignments=25 # 1nnlA read from 1nnlA/merged-good-all-a2m # found chain 1nnlA in training set Warning: unaligning (T0371)E4 because first residue in template chain is (1nnlA)S5 Warning: unaligning (T0371)L62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1nnlA)P57 Warning: unaligning (T0371)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1nnlA)P57 T0371 5 :SFKSLLPKYKCIFFDAFGVLKTYN 1nnlA 6 :ELRKLFYSADAVCFDVDSTVIREE T0371 37 :TFDYLKAQ 1nnlA 30 :GIDELAKI T0371 45 :GQ 1nnlA 39 :GV T0371 59 :PEQ 1nnlA 41 :EDA T0371 76 :A 1nnlA 58 :F T0371 104 :TANSANYLVSDGIK 1nnlA 59 :KAALTERLALIQPS T0371 130 :GEVNALV 1nnlA 74 :EQVQRLI T0371 139 :DDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAIGG 1nnlA 81 :AEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPA T0371 191 :ESI 1nnlA 128 :TNV T0371 205 :DSQMFMFAYDMLRQKM 1nnlA 154 :ESGGKGKVIKLLKEKF T0371 223 :SKREILMVGDT 1nnlA 170 :HFKKIIMIGDG T0371 235 :HTDILGGNKFG 1nnlA 181 :ATDMEACPPAD T0371 247 :DTALV 1nnlA 192 :AFIGF T0371 253 :TGNTRIDDAETK 1nnlA 197 :GGNVIRQQVKDN T0371 272 :PTHICES 1nnlA 209 :AKWYITD T0371 280 :VIEL 1nnlA 216 :FVEL Number of specific fragments extracted= 16 number of extra gaps= 0 total=405 Number of alignments=26 # 1nnlA read from 1nnlA/merged-good-all-a2m # found chain 1nnlA in training set Warning: unaligning (T0371)E4 because first residue in template chain is (1nnlA)S5 Warning: unaligning (T0371)R57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1nnlA)P57 Warning: unaligning (T0371)V280 because last residue in template chain is (1nnlA)G221 T0371 5 :SFKSLLPKYKCIFFDAFGVLKTYN 1nnlA 6 :ELRKLFYSADAVCFDVDSTVIREE T0371 37 :TFDYLK 1nnlA 30 :GIDELA T0371 58 :SPEQLADSYHKLGL 1nnlA 58 :FKAALTERLALIQP T0371 104 :TANSANYLV 1nnlA 72 :SREQVQRLI T0371 139 :DDEGFNWFHDLNKTVNLLRKRTIPAIVANTD 1nnlA 81 :AEQPPHLTPGIRELVSRLQERNVQVFLISGG T0371 186 :VATMIESIL 1nnlA 112 :FRSIVEHVA T0371 195 :GRRFIRFG 1nnlA 140 :NGEYAGFD T0371 205 :DSQMFMFAYDMLRQKM 1nnlA 154 :ESGGKGKVIKLLKEKF T0371 223 :SKREILMVGDTLH 1nnlA 170 :HFKKIIMIGDGAT T0371 237 :DIL 1nnlA 183 :DME T0371 244 :F 1nnlA 186 :A T0371 245 :GLD 1nnlA 189 :PAD T0371 248 :TALVLTGNTRIDDAET 1nnlA 193 :FIGFGGNVIRQQVKDN T0371 268 :TGIVPTHICESA 1nnlA 209 :AKWYITDFVELL Number of specific fragments extracted= 14 number of extra gaps= 0 total=419 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zd3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zd3A expands to /projects/compbio/data/pdb/1zd3.pdb.gz 1zd3A:# T0371 read from 1zd3A/merged-good-all-a2m # 1zd3A read from 1zd3A/merged-good-all-a2m # adding 1zd3A to template set # found chain 1zd3A in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1zd3A)T2 T0371 13 :YKCIFFDAFGVLKTYNGLL 1zd3A 3 :LRAAVFDLDGVLALPAVFG T0371 61 :QLADSYHKLGL 1zd3A 22 :VLGRTEEALAL T0371 75 :TADKIISSG 1zd3A 33 :PRGLLNDAF T0371 84 :MITKEYI 1zd3A 48 :GATTRLM T0371 91 :DLK 1zd3A 56 :GEI T0371 103 :GTANSANYLVS 1zd3A 59 :TLSQWIPLMEE T0371 115 :GIKMLPVSAIDDSNIGEVNA 1zd3A 79 :KVCLPKNFSIKEIFDKAISA T0371 143 :FNWFHDLNKTVNLLRKRTIPA 1zd3A 99 :RKINRPMLQAALMLRKKGFTT T0371 164 :IVANTDN 1zd3A 121 :ILTNTWL T0371 175 :TKTDVAIA 1zd3A 128 :DDRAERDG T0371 186 :VATMIESI 1zd3A 136 :LAQLMCEL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1zd3A 151 :IESCQVGMVKPEPQIYKFLLDTL T0371 221 :EISKREILMVGDT 1zd3A 174 :KASPSEVVFLDDI T0371 235 :HTDILGGNKFGLDTA 1zd3A 187 :GANLKPARDLGMVTI T0371 254 :GNTRIDDAETKIKS 1zd3A 202 :LVQDTDTALKELEK Number of specific fragments extracted= 15 number of extra gaps= 0 total=434 Number of alignments=28 # 1zd3A read from 1zd3A/merged-good-all-a2m # found chain 1zd3A in template set Warning: unaligning (T0371)P11 because first residue in template chain is (1zd3A)T2 T0371 13 :YKCIFFDAFGVLKT 1zd3A 3 :LRAAVFDLDGVLAL T0371 29 :GLLPGIENTF 1zd3A 45 :GPEGATTRLM T0371 54 :DASRSPEQLADSY 1zd3A 55 :KGEITLSQWIPLM T0371 104 :TANSANYLVSDGIKMLPV 1zd3A 68 :EENCRKCSETAKVCLPKN T0371 130 :GEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1zd3A 86 :FSIKEIFDKAISARKINRPMLQAALMLRKKGFTTAILTN T0371 169 :DNT 1zd3A 131 :AER T0371 175 :TKTDVAI 1zd3A 134 :DGLAQLM T0371 182 :AIGGVATMI 1zd3A 142 :ELKMHFDFL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1zd3A 151 :IESCQVGMVKPEPQIYKFLLDTL T0371 221 :EISKREILMVGDT 1zd3A 174 :KASPSEVVFLDDI T0371 235 :HTDILGGNKFGLDTALV 1zd3A 187 :GANLKPARDLGMVTILV T0371 256 :TRIDDAETKIKS 1zd3A 204 :QDTDTALKELEK Number of specific fragments extracted= 12 number of extra gaps= 0 total=446 Number of alignments=29 # 1zd3A read from 1zd3A/merged-good-all-a2m # found chain 1zd3A in template set T0371 13 :YKCIFFDAFGVLKT 1zd3A 3 :LRAAVFDLDGVLAL T0371 27 :YNGLLPGIEN 1zd3A 19 :VFGVLGRTEE T0371 37 :TFDYLK 1zd3A 36 :LLNDAF T0371 55 :ASRSPEQLADSYHK 1zd3A 56 :GEITLSQWIPLMEE T0371 106 :NSANYLVSDGIKMLP 1zd3A 70 :NCRKCSETAKVCLPK T0371 129 :IGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTD 1zd3A 85 :NFSIKEIFDKAISARKINRPMLQAALMLRKKGFTTAILTNT T0371 172 :YPLTKT 1zd3A 126 :WLDDRA T0371 182 :AIGGVATMIESIL 1zd3A 132 :ERDGLAQLMCELK T0371 199 :IRFGKPDSQMFMFAYDML 1zd3A 156 :VGMVKPEPQIYKFLLDTL T0371 221 :EISKREILMVGDTLH 1zd3A 174 :KASPSEVVFLDDIGA T0371 237 :DILGGNKFGLDTALV 1zd3A 189 :NLKPARDLGMVTILV Number of specific fragments extracted= 11 number of extra gaps= 0 total=457 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1l7mA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0371 read from 1l7mA/merged-good-all-a2m # 1l7mA read from 1l7mA/merged-good-all-a2m # found chain 1l7mA in training set Warning: unaligning (T0371)P11 because first residue in template chain is (1l7mA)K3 T0371 12 :KYKCIFFDAFGVLKTYN 1l7mA 4 :KKKLILFDFDSTLVNNE T0371 61 :QLADSYHKLGL 1l7mA 21 :TIDEIAREAGV T0371 76 :ADKI 1l7mA 32 :EEEV T0371 83 :GMITKEYIDLKV 1l7mA 36 :KKITKEAMEGKL T0371 103 :GTANSANYLVSD 1l7mA 48 :NFEQSLRKRVSL T0371 115 :GIKM 1l7mA 62 :DLPI T0371 130 :GEVNALVL 1l7mA 66 :EKVEKAIK T0371 142 :GFNWFHDLNKTVNLLRKRTIPA 1l7mA 74 :RITPTEGAEETIKELKNRGYVV T0371 164 :IVANT 1l7mA 97 :VVSGG T0371 174 :L 1l7mA 102 :F T0371 183 :IGGVATMIES 1l7mA 103 :DIAVNKIKEK T0371 194 :LGRRFIR 1l7mA 113 :LGLDYAF T0371 203 :K 1l7mA 144 :K T0371 206 :SQMFMFAYDML 1l7mA 145 :GEILEKIAKIE T0371 221 :EISKREILMVGDT 1l7mA 156 :GINLEDTVAVGDG T0371 235 :HTDILGGNKFGLDTAL 1l7mA 169 :ANDISMFKKAGLKIAF T0371 256 :TRIDD 1l7mA 185 :CAKPI T0371 265 :IKST 1l7mA 190 :LKEK T0371 272 :PTHICESA 1l7mA 194 :ADICIEKR T0371 280 :VIEL 1l7mA 203 :LREI Number of specific fragments extracted= 20 number of extra gaps= 0 total=477 Number of alignments=31 # 1l7mA read from 1l7mA/merged-good-all-a2m # found chain 1l7mA in training set Warning: unaligning (T0371)P11 because first residue in template chain is (1l7mA)K3 T0371 12 :KYKCIFFDAFGVLKTYN 1l7mA 4 :KKKLILFDFDSTLVNNE T0371 37 :TFDYLKAQ 1l7mA 21 :TIDEIARE T0371 45 :GQ 1l7mA 30 :GV T0371 59 :PEQLADSYHKLGLFSITAD 1l7mA 32 :EEEVKKITKEAMEGKLNFE T0371 109 :NYLVSD 1l7mA 51 :QSLRKR T0371 121 :VSAIDDSNIGEVNALVL 1l7mA 57 :VSLLKDLPIEKVEKAIK T0371 142 :GFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAI 1l7mA 74 :RITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGL T0371 191 :ESI 1l7mA 116 :DYA T0371 194 :LGRRFIRF 1l7mA 130 :LTGDVEGE T0371 203 :KPDSQMFMFAYDMLRQKMEISKREILMVGDTLH 1l7mA 138 :VLKENAKGEILEKIAKIEGINLEDTVAVGDGAN T0371 237 :DILGGNKFG 1l7mA 171 :DISMFKKAG T0371 247 :DTALV 1l7mA 180 :LKIAF T0371 256 :TRIDDAETK 1l7mA 185 :CAKPILKEK T0371 272 :PTHICESA 1l7mA 194 :ADICIEKR T0371 280 :VIEL 1l7mA 203 :LREI Number of specific fragments extracted= 15 number of extra gaps= 0 total=492 Number of alignments=32 # 1l7mA read from 1l7mA/merged-good-all-a2m # found chain 1l7mA in training set T0371 14 :KCIFFDAFGVLKTYNGLLPGI 1l7mA 6 :KLILFDFDSTLVNNETIDEIA T0371 42 :KAQG 1l7mA 27 :REAG T0371 58 :SPEQLADSYHKLGLFSIT 1l7mA 31 :VEEEVKKITKEAMEGKLN T0371 82 :SGMITKEYIDLK 1l7mA 49 :FEQSLRKRVSLL T0371 125 :DDSNIGEVNALV 1l7mA 61 :KDLPIEKVEKAI T0371 141 :EGFNWFHDLNKTVNLLRKRTIPAIVANTD 1l7mA 73 :KRITPTEGAEETIKELKNRGYVVAVVSGG T0371 186 :VATMIESIL 1l7mA 102 :FDIAVNKIK T0371 195 :GRRFIR 1l7mA 135 :EGEVLK T0371 205 :DSQMFMFAYDML 1l7mA 144 :KGEILEKIAKIE T0371 221 :EISKREILMVGDTLH 1l7mA 156 :GINLEDTVAVGDGAN T0371 237 :DILGGNKFGLDTAL 1l7mA 171 :DISMFKKAGLKIAF T0371 256 :TRIDDAET 1l7mA 185 :CAKPILKE T0371 267 :STGIVPT 1l7mA 193 :KADICIE T0371 274 :HICESAVIE 1l7mA 202 :DLREILKYI Number of specific fragments extracted= 14 number of extra gaps= 0 total=506 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cqzA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1cqzA expands to /projects/compbio/data/pdb/1cqz.pdb.gz 1cqzA:# T0371 read from 1cqzA/merged-good-all-a2m # 1cqzA read from 1cqzA/merged-good-all-a2m # adding 1cqzA to template set # found chain 1cqzA in template set Warning: unaligning (T0371)K14 because first residue in template chain is (1cqzA)R4 Warning: unaligning (T0371)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cqzA)G48 Warning: unaligning (T0371)I74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cqzA)G48 Warning: unaligning (T0371)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cqzA)Q90 Warning: unaligning (T0371)I129 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cqzA)Q90 T0371 15 :CIFFDAFGVLKTYN 1cqzA 5 :VAAFDLDGVLALPS T0371 75 :TADKI 1cqzA 49 :PTEQL T0371 90 :I 1cqzA 54 :M T0371 91 :DLKVDGG 1cqzA 56 :GKITFSQ T0371 130 :GEVNALVL 1cqzA 91 :IFSQAMAA T0371 143 :FNWFHDLNKTVNLLRKRTIPA 1cqzA 99 :RSINRPMLQAAIALKKKGFTT T0371 164 :IVANTDNTYP 1cqzA 121 :IVTNNWLDDG T0371 175 :TKTDVAIAI 1cqzA 131 :DKRDSLAQM T0371 184 :GGVATMIESILGRRFIRFGKPDSQMFMFAYDML 1cqzA 141 :CELSQHFDFLIESCQVGMIKPEPQIYNFLLDTL T0371 221 :EISKREILMVGDT 1cqzA 174 :KAKPNEVVFLDDF T0371 235 :HTDILGGNKFGLDTALVL 1cqzA 187 :GSNLKPARDMGMVTILVH T0371 256 :TRIDDAETKIKST 1cqzA 205 :NTASALRELEKVT Number of specific fragments extracted= 12 number of extra gaps= 0 total=518 Number of alignments=34 # 1cqzA read from 1cqzA/merged-good-all-a2m # found chain 1cqzA in template set Warning: unaligning (T0371)K14 because first residue in template chain is (1cqzA)R4 Warning: unaligning (T0371)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cqzA)G48 Warning: unaligning (T0371)I90 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cqzA)G48 Warning: unaligning (T0371)V99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cqzA)Q90 Warning: unaligning (T0371)D126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cqzA)Q90 T0371 15 :CIFFDAFGVLKTYN 1cqzA 5 :VAAFDLDGVLALPS T0371 91 :DLKVDG 1cqzA 51 :EQLMKG T0371 97 :GI 1cqzA 61 :SQ T0371 127 :SNIGEVNALV 1cqzA 91 :IFSQAMAARS T0371 145 :WFHDLNKTVNLLRKRTIPAIVANT 1cqzA 101 :INRPMLQAAIALKKKGFTTCIVTN T0371 169 :DNTYPLTKTDVA 1cqzA 131 :DKRDSLAQMMCE T0371 183 :IGGVATMI 1cqzA 143 :LSQHFDFL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1cqzA 151 :IESCQVGMIKPEPQIYNFLLDTL T0371 221 :EISKREILMVGDTLH 1cqzA 174 :KAKPNEVVFLDDFGS T0371 237 :DILGGNKFGLDTALV 1cqzA 189 :NLKPARDMGMVTILV T0371 255 :NTRIDDAETKIKSTGIV 1cqzA 204 :HNTASALRELEKVTGTQ Number of specific fragments extracted= 11 number of extra gaps= 0 total=529 Number of alignments=35 # 1cqzA read from 1cqzA/merged-good-all-a2m # found chain 1cqzA in template set Warning: unaligning (T0371)K14 because first residue in template chain is (1cqzA)R4 Warning: unaligning (T0371)L31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cqzA)G48 Warning: unaligning (T0371)D126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cqzA)Q90 T0371 15 :CIFFDAFGVLKT 1cqzA 5 :VAAFDLDGVLAL T0371 29 :GL 1cqzA 17 :PS T0371 127 :SNIGEVN 1cqzA 91 :IFSQAMA T0371 142 :GFNWFHDLNKTVNLLRKRTIPAIVANTD 1cqzA 98 :ARSINRPMLQAAIALKKKGFTTCIVTNN T0371 173 :PLTKTDVAIAIGGVATMIESIL 1cqzA 126 :WLDDGDKRDSLAQMMCELSQHF T0371 199 :IRFGKPDSQMFMFAYDML 1cqzA 156 :VGMIKPEPQIYNFLLDTL T0371 221 :EISKREILMVGDTLH 1cqzA 174 :KAKPNEVVFLDDFGS T0371 237 :DILGGNKFGLDTALV 1cqzA 189 :NLKPARDMGMVTILV T0371 254 :GNTR 1cqzA 204 :HNTA Number of specific fragments extracted= 9 number of extra gaps= 0 total=538 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wviA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wviA expands to /projects/compbio/data/pdb/1wvi.pdb.gz 1wviA:# T0371 read from 1wviA/merged-good-all-a2m # 1wviA read from 1wviA/merged-good-all-a2m # adding 1wviA to template set # found chain 1wviA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1wviA)T1002 T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHK 1wviA 1003 :YKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLAT T0371 69 :LGL 1wviA 1060 :FNI T0371 73 :SITADKIISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDGIKML 1wviA 1063 :KTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYRED T0371 129 :IGEVNALVLLDDEGFN 1wviA 1110 :SENPAYVVVGLDTNLT T0371 146 :FHDLNKTVNLL 1wviA 1126 :YEKLTLATLAI T0371 158 :KRTIPAIVANTDNTYP 1wviA 1137 :QKGAVFIGTNPDLNIP T0371 175 :TKTDVAIAIGGVATMIESILGRRFIRFGKPDSQMFMFAYDML 1wviA 1153 :TERGLLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRL T0371 221 :EISKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDD 1wviA 1195 :GVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEE T0371 265 :IKSTGIVPTHICES 1wviA 1235 :VPALPIQPDFVLSS T0371 280 :VIEL 1wviA 1249 :LAEW Number of specific fragments extracted= 10 number of extra gaps= 0 total=548 Number of alignments=37 # 1wviA read from 1wviA/merged-good-all-a2m # found chain 1wviA in template set Warning: unaligning (T0371)P11 because first residue in template chain is (1wviA)T1002 T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHK 1wviA 1003 :YKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLAT T0371 69 :LGL 1wviA 1060 :FNI T0371 73 :SITADKIISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDGIKMLP 1wviA 1063 :KTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDS T0371 130 :GEVNALVLLDDEGFN 1wviA 1111 :ENPAYVVVGLDTNLT T0371 146 :FHDLNKTVNLL 1wviA 1126 :YEKLTLATLAI T0371 158 :KRTIPAIVANTDNTYPLTKTD 1wviA 1137 :QKGAVFIGTNPDLNIPTERGL T0371 180 :AIAIGGVATMIESILGRRFIRFGKPDSQMFMFAYDML 1wviA 1158 :LPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRL T0371 221 :EISKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDDAETK 1wviA 1195 :GVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPAL T0371 269 :GIVPTHICES 1wviA 1239 :PIQPDFVLSS T0371 280 :VIEL 1wviA 1249 :LAEW Number of specific fragments extracted= 10 number of extra gaps= 0 total=558 Number of alignments=38 # 1wviA read from 1wviA/merged-good-all-a2m # found chain 1wviA in template set T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLFSITADKIISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDGIKMLP 1wviA 1003 :YKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDS T0371 130 :GEVNALVLLDDEGFN 1wviA 1111 :ENPAYVVVGLDTNLT T0371 147 :HDLNKTVNLLRKRTIPAIVANTDNTYPLTKT 1wviA 1126 :YEKLTLATLAIQKGAVFIGTNPDLNIPTERG T0371 179 :VAIAIGGVATMIESILGRRFIRFGKPDSQMFMFAYDML 1wviA 1157 :LLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRL T0371 221 :EISKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDDAETKIKSTGIVPTHICES 1wviA 1195 :GVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSSLAEW Number of specific fragments extracted= 5 number of extra gaps= 0 total=563 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zjjA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zjjA expands to /projects/compbio/data/pdb/1zjj.pdb.gz 1zjjA:# T0371 read from 1zjjA/merged-good-all-a2m # 1zjjA read from 1zjjA/merged-good-all-a2m # adding 1zjjA to template set # found chain 1zjjA in template set T0371 14 :KCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGL 1zjjA 2 :VAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGI T0371 73 :SITADKIISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFN 1zjjA 60 :DVSSSIIITSGLATRLYMSKHLDPGKIFVIGGEGLVKEMQALGWGIVTLDEARQGSWKEVKHVVVGLDPDLT T0371 147 :HDLNKTVNLLRKRTIPAIVANTDNTYP 1zjjA 132 :YEKLKYATLAIRNGATFIGTNPDATLP T0371 175 :TKTDVAIAIGGVATMIESILGRRFIRFGKPDSQMFMFAYDML 1zjjA 159 :GEEGIYPGAGSIIAALKVATNVEPIIIGKPNEPMYEVVREMF T0371 221 :E 1zjjA 201 :P T0371 224 :KREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDD 1zjjA 202 :GEELWMVGDRLDTDIAFAKKFGMKAIMVLTGVSSLED T0371 265 :IKSTGIVPTHICES 1zjjA 239 :IKKSEYKPDLVLPS T0371 280 :VIEL 1zjjA 253 :VYEL Number of specific fragments extracted= 8 number of extra gaps= 0 total=571 Number of alignments=40 # 1zjjA read from 1zjjA/merged-good-all-a2m # found chain 1zjjA in template set T0371 14 :KCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGL 1zjjA 2 :VAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGI T0371 73 :SITADKIISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFN 1zjjA 60 :DVSSSIIITSGLATRLYMSKHLDPGKIFVIGGEGLVKEMQALGWGIVTLDEARQGSWKEVKHVVVGLDPDLT T0371 147 :HDLNKTVNLLRKRTIPAIVANTDNTYPLTKT 1zjjA 132 :YEKLKYATLAIRNGATFIGTNPDATLPGEEG T0371 179 :VAIAIGGVATMIESILGRRFIRFGKPDSQMFMFAYDML 1zjjA 163 :IYPGAGSIIAALKVATNVEPIIIGKPNEPMYEVVREMF T0371 223 :SKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDDAE 1zjjA 201 :PGEELWMVGDRLDTDIAFAKKFGMKAIMVLTGVSSLEDIK T0371 267 :STGIVPTHICES 1zjjA 241 :KSEYKPDLVLPS T0371 280 :VIEL 1zjjA 253 :VYEL Number of specific fragments extracted= 7 number of extra gaps= 0 total=578 Number of alignments=41 # 1zjjA read from 1zjjA/merged-good-all-a2m # found chain 1zjjA in template set T0371 15 :CIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGL 1zjjA 3 :AIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGI T0371 73 :SITADKIISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFN 1zjjA 60 :DVSSSIIITSGLATRLYMSKHLDPGKIFVIGGEGLVKEMQALGWGIVTLDEARQGSWKEVKHVVVGLDPDLT T0371 147 :HDLNKTVNLLRKRTIPAIVANTDNTYPLTKT 1zjjA 132 :YEKLKYATLAIRNGATFIGTNPDATLPGEEG T0371 179 :VAIAIGGVATMIESILGRRFIRFGKPDSQMFMFAYDML 1zjjA 163 :IYPGAGSIIAALKVATNVEPIIIGKPNEPMYEVVREMF T0371 223 :SKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDDAETKIKSTGIVPTHICESAV 1zjjA 201 :PGEELWMVGDRLDTDIAFAKKFGMKAIMVLTGVSSLEDIKKSEYKPDLVLPSVYELID Number of specific fragments extracted= 5 number of extra gaps= 0 total=583 Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2go7A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2go7A expands to /projects/compbio/data/pdb/2go7.pdb.gz 2go7A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0371 read from 2go7A/merged-good-all-a2m # 2go7A read from 2go7A/merged-good-all-a2m # adding 2go7A to template set # found chain 2go7A in template set Warning: unaligning (T0371)F18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2go7A)D9 Warning: unaligning (T0371)D19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2go7A)D9 Warning: unaligning (T0371)V165 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2go7A)Y106 Warning: unaligning (T0371)A166 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2go7A)Y106 T0371 14 :KCIF 2go7A 4 :TAFI T0371 20 :AFGVLKTYNGLL 2go7A 10 :LDGTLLDSYEAI T0371 59 :PEQLADSYHKLGL 2go7A 22 :LSGIEETFAQFSI T0371 73 :SITADKI 2go7A 35 :PYDKEKV T0371 87 :KEYIDLK 2go7A 42 :REFIFKY T0371 103 :GTANSANYLV 2go7A 49 :SVQDLLVRVA T0371 113 :SDGIKM 2go7A 60 :DRNLDV T0371 126 :DSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAI 2go7A 66 :EVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQF T0371 167 :NTDNTYP 2go7A 107 :THKGNNA T0371 175 :TKTDVAIA 2go7A 114 :FTILKDLG T0371 186 :VATMIESILGRRFIRFGKPDSQMFMFAYDML 2go7A 122 :VESYFTEILTSQSGFVRKPSPEAATYLLDKY T0371 221 :EISKREILMVGDT 2go7A 153 :QLNSDNTYYIGDR T0371 235 :HTDILGGNKFGLDTAL 2go7A 166 :TLDVEFAQNSGIQSIN T0371 265 :IKSTGIVPTHICES 2go7A 182 :FLESTYEGNHRIQA T0371 280 :VIEL 2go7A 196 :LADI Number of specific fragments extracted= 15 number of extra gaps= 2 total=598 Number of alignments=43 # 2go7A read from 2go7A/merged-good-all-a2m # found chain 2go7A in template set Warning: unaligning (T0371)F18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2go7A)D9 Warning: unaligning (T0371)D19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2go7A)D9 Warning: unaligning (T0371)V165 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2go7A)Y106 Warning: unaligning (T0371)A166 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2go7A)Y106 T0371 14 :KCIF 2go7A 4 :TAFI T0371 20 :AFGVLKTYNGLL 2go7A 10 :LDGTLLDSYEAI T0371 32 :PGIENTFDYL 2go7A 23 :SGIEETFAQF T0371 45 :G 2go7A 33 :S T0371 55 :ASRSPEQLADSY 2go7A 34 :IPYDKEKVREFI T0371 91 :DLK 2go7A 46 :FKY T0371 103 :GTANSANYLVSD 2go7A 49 :SVQDLLVRVAED T0371 121 :VSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAI 2go7A 61 :RNLDVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQF T0371 167 :NTDNTYP 2go7A 107 :THKGNNA T0371 175 :TKTDVAIAIGGVATMI 2go7A 114 :FTILKDLGVESYFTEI T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 2go7A 130 :LTSQSGFVRKPSPEAATYLLDKY T0371 221 :EISKREILMVGDT 2go7A 153 :QLNSDNTYYIGDR T0371 235 :HTDILGGNKFGLDTALV 2go7A 166 :TLDVEFAQNSGIQSINF T0371 266 :KSTGIVPTHICES 2go7A 183 :LESTYEGNHRIQA T0371 280 :VIEL 2go7A 196 :LADI Number of specific fragments extracted= 15 number of extra gaps= 2 total=613 Number of alignments=44 # 2go7A read from 2go7A/merged-good-all-a2m # found chain 2go7A in template set Warning: unaligning (T0371)F18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2go7A)D9 Warning: unaligning (T0371)D19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2go7A)D9 Warning: unaligning (T0371)V165 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2go7A)Y106 Warning: unaligning (T0371)A166 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2go7A)Y106 T0371 14 :KCIF 2go7A 4 :TAFI T0371 20 :AFGVLKTYNGLLPG 2go7A 10 :LDGTLLDSYEAILS T0371 34 :IENTFDYL 2go7A 25 :IEETFAQF T0371 45 :GQD 2go7A 33 :SIP T0371 57 :RSPEQLADSYHKLGL 2go7A 36 :YDKEKVREFIFKYSV T0371 83 :GMITKEYIDLKVDG 2go7A 51 :QDLLVRVAEDRNLD T0371 104 :TANSANYLVS 2go7A 65 :VEVLNQVRAQ T0371 135 :LVLLDDEGFNWFHDLNKTVNLLRKRTIPAI 2go7A 75 :SLAEKNAQVVLMPGAREVLAWADESGIQQF T0371 167 :NT 2go7A 107 :TH T0371 182 :AIGGVATMIESIL 2go7A 109 :KGNNAFTILKDLG T0371 195 :GRRFIRFGKPDSQMFMFAYDML 2go7A 131 :TSQSGFVRKPSPEAATYLLDKY T0371 221 :EISKREILMVGDTLH 2go7A 153 :QLNSDNTYYIGDRTL T0371 237 :DILGGNKFGLDTAL 2go7A 168 :DVEFAQNSGIQSIN T0371 261 :AETKIKSTGIVPTHICESAV 2go7A 182 :FLESTYEGNHRIQALADISR Number of specific fragments extracted= 14 number of extra gaps= 2 total=627 Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ys9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0371/1ys9A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0371/1ys9A/merged-good-all-a2m.gz for input Trying 1ys9A/merged-good-all-a2m Error: Couldn't open file 1ys9A/merged-good-all-a2m or 1ys9A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nrwA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0371 read from 1nrwA/merged-good-all-a2m # 1nrwA read from 1nrwA/merged-good-all-a2m # found chain 1nrwA in training set Warning: unaligning (T0371)Y13 because first residue in template chain is (1nrwA)M1 T0371 14 :KCIFFDAFGVLKTYNGLL 1nrwA 2 :KLIAIDLDGTLLNSKHQV T0371 32 :PGIENTFDYLKAQGQDYYIVT 1nrwA 21 :LENENALRQAQRDGIEVVVST T0371 56 :SRSPEQLADSYHKLGL 1nrwA 42 :GRAHFDVMSIFEPLGI T0371 73 :SIT 1nrwA 58 :KTW T0371 79 :IISSGMITKEYI 1nrwA 61 :VISANGAVIHDP T0371 91 :DLKVDGGIVAYLGTANSANYLVSDGI 1nrwA 74 :GRLYHHETIDKKRAYDILSWLESENY T0371 117 :KMLPVSAIDDSNIGEVNALVLLDDE 1nrwA 108 :AIYTPQNGRELLDVELDRFRSANPE T0371 143 :FN 1nrwA 133 :AD T0371 146 :FHDLNKTVNLLRKR 1nrwA 135 :LSVLKQAAEVQYSQ T0371 174 :LTKTDVAIAIG 1nrwA 154 :INSFQELFEAD T0371 185 :GVATMIESILGRRFIR 1nrwA 181 :KLEAGWKRYEHAEDLT T0371 201 :FGK 1nrwA 212 :ASK T0371 206 :SQMFMFAYDML 1nrwA 215 :GQALKRLAKQL T0371 221 :EISKREILMVGDT 1nrwA 226 :NIPLEETAAVGDS T0371 235 :HTDILGGNKFGLDTA 1nrwA 239 :LNDKSMLEAAGKGVA T0371 254 :GNTRIDDAETK 1nrwA 254 :MGNAREDIKSI T0371 272 :PTHICE 1nrwA 265 :ADAVTL Number of specific fragments extracted= 17 number of extra gaps= 0 total=644 Number of alignments=46 # 1nrwA read from 1nrwA/merged-good-all-a2m # found chain 1nrwA in training set Warning: unaligning (T0371)Y13 because first residue in template chain is (1nrwA)M1 T0371 14 :KCIFFDAFGVLKTYNGLL 1nrwA 2 :KLIAIDLDGTLLNSKHQV T0371 32 :PGIENTFDYLKAQGQDYYIVTNDA 1nrwA 21 :LENENALRQAQRDGIEVVVSTGRA T0371 59 :PEQLADSYHKLGL 1nrwA 45 :HFDVMSIFEPLGI T0371 73 :SI 1nrwA 58 :KT T0371 78 :KIISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDGIKM 1nrwA 61 :VISANGAVIHDPEGRLYHHETIDKKRAYDILSWLESENYYY T0371 119 :LPVSAIDDSNIGEVNALVLLDDEGFN 1nrwA 109 :IYTPQNGRELLDVELDRFRSANPEAD T0371 146 :FHDLNKTVNLLRKRT 1nrwA 135 :LSVLKQAAEVQYSQS T0371 161 :IPAIVANTDNTYPLTKTDVAIAIGGVATMI 1nrwA 169 :FYNILGFSFFKEKLEAGWKRYEHAEDLTLV T0371 194 :LGRRFIR 1nrwA 199 :SSAEHNF T0371 201 :FGKPD 1nrwA 209 :SRKAS T0371 209 :FMFAYDMLRQKMEISKREILMVGDTLH 1nrwA 214 :KGQALKRLAKQLNIPLEETAAVGDSLN T0371 237 :DILGGNKFG 1nrwA 241 :DKSMLEAAG T0371 247 :DTALVL 1nrwA 250 :KGVAMG T0371 256 :TRIDDAETK 1nrwA 256 :NAREDIKSI T0371 272 :PTHICE 1nrwA 265 :ADAVTL Number of specific fragments extracted= 15 number of extra gaps= 0 total=659 Number of alignments=47 # 1nrwA read from 1nrwA/merged-good-all-a2m # found chain 1nrwA in training set Warning: unaligning (T0371)Y13 because first residue in template chain is (1nrwA)M1 T0371 14 :KCIFFDAFGVLKTYNG 1nrwA 2 :KLIAIDLDGTLLNSKH T0371 30 :LLPGIENTFDYLKAQGQDYYIVTNDA 1nrwA 19 :VSLENENALRQAQRDGIEVVVSTGRA T0371 59 :PEQLADSYHKLGL 1nrwA 45 :HFDVMSIFEPLGI T0371 98 :IVAYLG 1nrwA 58 :KTWVIS T0371 132 :VNALVLLDDEG 1nrwA 64 :ANGAVIHDPEG T0371 144 :NWF 1nrwA 75 :RLY T0371 147 :HDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAI 1nrwA 85 :KRAYDILSWLESENYYYEVFTGSAIYTPQNGRELLDV T0371 186 :VATMIESIL 1nrwA 122 :ELDRFRSAN T0371 206 :SQMFMFAYDML 1nrwA 179 :KEKLEAGWKRY T0371 220 :MEISKREILMVGDTLH 1nrwA 225 :LNIPLEETAAVGDSLN T0371 237 :DILGGNKFG 1nrwA 241 :DKSMLEAAG T0371 247 :DT 1nrwA 250 :KG T0371 251 :VLTGNTRID 1nrwA 252 :VAMGNARED T0371 261 :AETK 1nrwA 261 :IKSI T0371 268 :TGIVPTHICE 1nrwA 265 :ADAVTLTNDE Number of specific fragments extracted= 15 number of extra gaps= 0 total=674 Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yv9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0371/1yv9A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0371/1yv9A/merged-good-all-a2m.gz for input Trying 1yv9A/merged-good-all-a2m Error: Couldn't open file 1yv9A/merged-good-all-a2m or 1yv9A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rdfA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rdfA expands to /projects/compbio/data/pdb/1rdf.pdb.gz 1rdfA:# T0371 read from 1rdfA/merged-good-all-a2m # 1rdfA read from 1rdfA/merged-good-all-a2m # adding 1rdfA to template set # found chain 1rdfA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1rdfA)K5 Warning: unaligning (T0371)S223 because of BadResidue code BAD_PEPTIDE at template residue (1rdfA)P177 T0371 13 :YKCIFFDAFGVLKTYNGLL 1rdfA 6 :IEAVIFDWAGTTVDYGCFA T0371 59 :PEQLADSYHKLGL 1rdfA 26 :LEVFMEIFHKRGV T0371 73 :SITADKII 1rdfA 39 :AITAEEAR T0371 97 :GIVA 1rdfA 47 :KPMP T0371 101 :YLGTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1rdfA 60 :LTEMPRIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINAVKEVIASLRERGIKIGSTTG T0371 174 :LTKTDVAI 1rdfA 128 :YTREMMDI T0371 186 :VATMIES 1rdfA 136 :VAKEAAL T0371 195 :GRRFIRFGKPDSQMFMFAYDML 1rdfA 152 :TPDDVPAGRPYPWMCYKNAMEL T0371 221 :EI 1rdfA 174 :GV T0371 224 :KREILMVGDT 1rdfA 178 :MNHMIKVGDT T0371 235 :HTDILGGNKFGLDTALVLTGNTR 1rdfA 188 :VSDMKEGRNAGMWTVGVILGSSE T0371 258 :IDDAETKIKSTG 1rdfA 230 :IEVVRNRFVENG T0371 272 :PTHICES 1rdfA 242 :AHFTIET T0371 280 :VIEL 1rdfA 249 :MQEL Number of specific fragments extracted= 14 number of extra gaps= 1 total=688 Number of alignments=49 # 1rdfA read from 1rdfA/merged-good-all-a2m # found chain 1rdfA in template set Warning: unaligning (T0371)P11 because first residue in template chain is (1rdfA)K5 Warning: unaligning (T0371)S223 because of BadResidue code BAD_PEPTIDE at template residue (1rdfA)P177 T0371 13 :YKCIFFDAFGVLKTYNGLL 1rdfA 6 :IEAVIFDWAGTTVDYGCFA T0371 59 :PEQLADSYHKLGL 1rdfA 26 :LEVFMEIFHKRGV T0371 73 :SITADKIISSG 1rdfA 39 :AITAEEARKPM T0371 91 :DLKVDGGIVAYLGTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAIGGVA 1rdfA 50 :PLLKIDHVRALTEMPRIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINAVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQGYK T0371 188 :TMI 1rdfA 148 :DFL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1rdfA 151 :VTPDDVPAGRPYPWMCYKNAMEL T0371 221 :EI 1rdfA 174 :GV T0371 224 :KREILMVGDTLH 1rdfA 178 :MNHMIKVGDTVS T0371 237 :DILGGNKFGLDTALVLTGNTR 1rdfA 190 :DMKEGRNAGMWTVGVILGSSE T0371 258 :IDDAETKIKSTG 1rdfA 230 :IEVVRNRFVENG T0371 272 :PTHICES 1rdfA 242 :AHFTIET T0371 280 :VIEL 1rdfA 249 :MQEL Number of specific fragments extracted= 12 number of extra gaps= 1 total=700 Number of alignments=50 # 1rdfA read from 1rdfA/merged-good-all-a2m # found chain 1rdfA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1rdfA)K5 Warning: unaligning (T0371)S223 because of BadResidue code BAD_PEPTIDE at template residue (1rdfA)P177 T0371 13 :YKCIFFDAFGVLKTYNGLLP 1rdfA 6 :IEAVIFDWAGTTVDYGCFAP T0371 59 :PEQLADSYHKLGL 1rdfA 26 :LEVFMEIFHKRGV T0371 73 :SITADKIISSG 1rdfA 39 :AITAEEARKPM T0371 94 :VD 1rdfA 50 :PL T0371 100 :AYLGTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1rdfA 59 :ALTEMPRIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINAVKEVIASLRERGIKIGSTTG T0371 181 :IAIGGVATMIESIL 1rdfA 128 :YTREMMDIVAKEAA T0371 195 :GRRFIRFGKPDSQMFMFAYDML 1rdfA 152 :TPDDVPAGRPYPWMCYKNAMEL T0371 221 :EI 1rdfA 174 :GV T0371 224 :KREILMVGDTLH 1rdfA 178 :MNHMIKVGDTVS T0371 237 :DILGGNKFGLDTALVLTG 1rdfA 190 :DMKEGRNAGMWTVGVILG T0371 255 :NTRIDDAE 1rdfA 212 :GLTEEEVE T0371 266 :KSTGIVPTHICESAV 1rdfA 240 :NGAHFTIETMQELES Number of specific fragments extracted= 12 number of extra gaps= 1 total=712 Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fdrA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2fdrA expands to /projects/compbio/data/pdb/2fdr.pdb.gz 2fdrA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 600, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 602, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 604, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 606, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 608, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 610, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 612, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 614, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 616, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 618, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 620, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 711, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 713, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 715, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 717, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 719, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 721, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 723, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 725, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 751, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 753, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 755, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 757, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 759, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 761, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 765, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 771, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 775, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 777, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 779, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 781, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 2fdrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1330, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 1332, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 1334, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 1336, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 1338, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 1340, because occupancy 0.500 <= existing 0.500 in 2fdrA Skipped atom 1342, because occupancy 0.500 <= existing 0.500 in 2fdrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0371 read from 2fdrA/merged-good-all-a2m # 2fdrA read from 2fdrA/merged-good-all-a2m # adding 2fdrA to template set # found chain 2fdrA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (2fdrA)G3 Warning: unaligning (T0371)F18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fdrA)D10 Warning: unaligning (T0371)D19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fdrA)D10 T0371 13 :YKCIF 2fdrA 4 :FDLII T0371 20 :AFGVLKTYNGLL 2fdrA 11 :CDGVLVDSEIIA T0371 59 :PEQLADSYHKLGL 2fdrA 23 :AQVESRLLTEAGY T0371 73 :SITADKII 2fdrA 36 :PISVEEMG T0371 97 :GIVAYLGTANSANYLV 2fdrA 44 :ERFAGMTWKNILLQVE T0371 113 :SDGI 2fdrA 61 :EASI T0371 122 :SAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLL 2fdrA 65 :PLSASLLDKSEKLLDMRLERDVKIIDGVKFALSRL T0371 160 :TIPA 2fdrA 100 :TTPR T0371 164 :IVANTDNTY 2fdrA 105 :ICSNSSSHR T0371 174 :LTKTDVAIA 2fdrA 114 :LDMMLTKVG T0371 186 :VATMI 2fdrA 123 :LKPYF T0371 192 :SILGRRFIRFG 2fdrA 130 :HIYSAKDLGAD T0371 203 :KPDSQMFMFAYDML 2fdrA 143 :KPKPDIFLHGAAQF T0371 221 :EISKREILMVGDT 2fdrA 157 :GVSPDRVVVVEDS T0371 235 :HTDILGGNKFGLDTALVLTGNTRIDDAETKIKSTG 2fdrA 170 :VHGIHGARAAGMRVIGFTGASHTYPSHADRLTDAG T0371 272 :PTHICES 2fdrA 205 :AETVISR T0371 280 :VIEL 2fdrA 212 :MQDL Number of specific fragments extracted= 17 number of extra gaps= 1 total=729 Number of alignments=52 # 2fdrA read from 2fdrA/merged-good-all-a2m # found chain 2fdrA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (2fdrA)G3 Warning: unaligning (T0371)F18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fdrA)D10 Warning: unaligning (T0371)D19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fdrA)D10 T0371 13 :YKCIF 2fdrA 4 :FDLII T0371 20 :AFGVLKTYN 2fdrA 11 :CDGVLVDSE T0371 32 :PGIENTF 2fdrA 20 :IIAAQVE T0371 39 :DYLKAQGQD 2fdrA 28 :RLLTEAGYP T0371 57 :RSPEQLADSY 2fdrA 37 :ISVEEMGERF T0371 100 :AYLGTANSANYLV 2fdrA 47 :AGMTWKNILLQVE T0371 113 :SDGIKML 2fdrA 61 :EASIPLS T0371 126 :DSNIGEVNALVL 2fdrA 68 :ASLLDKSEKLLD T0371 138 :LDDEGFNWFHDLNKTVNLL 2fdrA 81 :RLERDVKIIDGVKFALSRL T0371 160 :TIPAIVANTDNTYPLTKTDVAIAIGGVAT 2fdrA 100 :TTPRCICSNSSSHRLDMMLTKVGLKPYFA T0371 191 :ESILGRRFIR 2fdrA 129 :PHIYSAKDLG T0371 201 :FGKPDSQMFMFAYDML 2fdrA 141 :RVKPKPDIFLHGAAQF T0371 221 :EISKREILMVGDTLH 2fdrA 157 :GVSPDRVVVVEDSVH T0371 237 :DILGGNKFGLDTALVLTGNTRIDDAETKIKSTG 2fdrA 172 :GIHGARAAGMRVIGFTGASHTYPSHADRLTDAG T0371 272 :PTHICES 2fdrA 205 :AETVISR T0371 280 :VIEL 2fdrA 212 :MQDL Number of specific fragments extracted= 16 number of extra gaps= 1 total=745 Number of alignments=53 # 2fdrA read from 2fdrA/merged-good-all-a2m # found chain 2fdrA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (2fdrA)G3 Warning: unaligning (T0371)F18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fdrA)D10 Warning: unaligning (T0371)D19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fdrA)D10 T0371 13 :YKCIF 2fdrA 4 :FDLII T0371 20 :AFGVLKTYN 2fdrA 11 :CDGVLVDSE T0371 31 :LPGIENTFDYLKAQGQDY 2fdrA 20 :IIAAQVESRLLTEAGYPI T0371 55 :ASRSPEQLADSYHKLGLFSITADKIISSGMITKEYIDL 2fdrA 47 :AGMTWKNILLQVESEASIPLSASLLDKSEKLLDMRLER T0371 142 :GFNWFHDLNKTVNLL 2fdrA 85 :DVKIIDGVKFALSRL T0371 161 :IPAIVANTD 2fdrA 101 :TPRCICSNS T0371 182 :AIGGVATMIESIL 2fdrA 110 :SSHRLDMMLTKVG T0371 195 :GRRF 2fdrA 138 :GADR T0371 202 :GKPDSQMFMFAYDML 2fdrA 142 :VKPKPDIFLHGAAQF T0371 221 :EISKREILMVGDTLH 2fdrA 157 :GVSPDRVVVVEDSVH T0371 237 :DILGGNKFGLDTALVLTGNTRIDDAE 2fdrA 172 :GIHGARAAGMRVIGFTGASHTYPSHA T0371 263 :T 2fdrA 202 :D T0371 266 :KSTGIVPTHICESA 2fdrA 203 :AGAETVISRMQDLP Number of specific fragments extracted= 13 number of extra gaps= 1 total=758 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lvhA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1lvhA expands to /projects/compbio/data/pdb/1lvh.pdb.gz 1lvhA:Bad short name: P for alphabet: pdb_atoms Bad short name: OP1 for alphabet: pdb_atoms Bad short name: OP2 for alphabet: pdb_atoms Bad short name: OP3 for alphabet: pdb_atoms # T0371 read from 1lvhA/merged-good-all-a2m # 1lvhA read from 1lvhA/merged-good-all-a2m # adding 1lvhA to template set # found chain 1lvhA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1lvhA)M1 Warning: unaligning (T0371)F18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1lvhA)L9 Warning: unaligning (T0371)A20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1lvhA)L9 T0371 13 :YKCIF 1lvhA 2 :FKAVL T0371 21 :FGVLKTYNGLL 1lvhA 10 :DGVITDTAEYH T0371 59 :PEQLADSYHKLGLFSITADKI 1lvhA 21 :FRAWKALAEEIGINGVDRQFN T0371 97 :GIVAYLGTANSANYLVSD 1lvhA 42 :EQLKGVSREDSLQKILDL T0371 115 :GIKMLP 1lvhA 61 :DKKVSA T0371 122 :SAIDDSNIGEVNALVLLDDE 1lvhA 67 :EEFKELAKRKNDNYVKMIQD T0371 142 :G 1lvhA 89 :P T0371 145 :WFHDLNKTVNLLRKRTIPAIVANTDNTY 1lvhA 92 :VYPGILQLLKDLRSNKIKIALASASKNG T0371 175 :TKTDVAIA 1lvhA 120 :PFLLERMN T0371 186 :VATMIESILGRRFIRFGKPDSQMFMFAYDML 1lvhA 128 :LTGYFDAIADPAEVAASKPAPDIFIAAAHAV T0371 221 :EISKREILMVGDT 1lvhA 159 :GVAPSESIGLEDS T0371 235 :HTDILGGNKFGLDTALVL 1lvhA 172 :QAGIQAIKDSGALPIGVG T0371 257 :RIDD 1lvhA 190 :RPED T0371 265 :IKS 1lvhA 194 :LGD T0371 272 :PTHICES 1lvhA 197 :DIVIVPD T0371 280 :VIEL 1lvhA 204 :TSHY Number of specific fragments extracted= 16 number of extra gaps= 0 total=774 Number of alignments=55 # 1lvhA read from 1lvhA/merged-good-all-a2m # found chain 1lvhA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1lvhA)M1 Warning: unaligning (T0371)F18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1lvhA)L9 Warning: unaligning (T0371)A20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1lvhA)L9 T0371 13 :YKCIF 1lvhA 2 :FKAVL T0371 21 :FGVLKTYNGLL 1lvhA 10 :DGVITDTAEYH T0371 32 :PGIENTF 1lvhA 22 :RAWKALA T0371 42 :KAQGQD 1lvhA 29 :EEIGIN T0371 55 :ASRSPEQLADSYHKLGLFSITADK 1lvhA 45 :KGVSREDSLQKILDLADKKVSAEE T0371 104 :TANSA 1lvhA 69 :FKELA T0371 130 :GEVNALVLLDDEGFN 1lvhA 74 :KRKNDNYVKMIQDVS T0371 145 :WFHDLNKTVNLLRKRTIPAIVANTDNTY 1lvhA 92 :VYPGILQLLKDLRSNKIKIALASASKNG T0371 175 :TKTDVAIAIGGVATMI 1lvhA 120 :PFLLERMNLTGYFDAI T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1lvhA 136 :ADPAEVAASKPAPDIFIAAAHAV T0371 221 :EISKREILMVGDTLH 1lvhA 159 :GVAPSESIGLEDSQA T0371 237 :DILGGNKFGLDTALV 1lvhA 174 :GIQAIKDSGALPIGV T0371 256 :TRIDDAET 1lvhA 189 :GRPEDLGD T0371 272 :PTHICES 1lvhA 197 :DIVIVPD T0371 280 :VIE 1lvhA 204 :TSH Number of specific fragments extracted= 15 number of extra gaps= 0 total=789 Number of alignments=56 # 1lvhA read from 1lvhA/merged-good-all-a2m # found chain 1lvhA in template set Warning: unaligning (T0371)F18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1lvhA)L9 Warning: unaligning (T0371)A20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1lvhA)L9 T0371 13 :YKCIF 1lvhA 2 :FKAVL T0371 21 :FGVLKTY 1lvhA 10 :DGVITDT T0371 31 :LPGIENTFDYLK 1lvhA 17 :AEYHFRAWKALA T0371 43 :AQGQD 1lvhA 30 :EIGIN T0371 55 :ASRSPEQLADSYHKLGLFSITADKIISSGMITKEYIDLKVDGG 1lvhA 45 :KGVSREDSLQKILDLADKKVSAEEFKELAKRKNDNYVKMIQDV T0371 141 :EGFNWFHDLNKTVNLLRKRTIPAIVANT 1lvhA 88 :SPADVYPGILQLLKDLRSNKIKIALASA T0371 174 :LTKT 1lvhA 116 :SKNG T0371 187 :ATMIESIL 1lvhA 120 :PFLLERMN T0371 195 :GRRFIRFGKPDSQMFMFAYDML 1lvhA 137 :DPAEVAASKPAPDIFIAAAHAV T0371 221 :EISKREILMVGDTLH 1lvhA 159 :GVAPSESIGLEDSQA T0371 237 :DILGGNKFGLDTALV 1lvhA 174 :GIQAIKDSGALPIGV T0371 256 :TRIDDAETKI 1lvhA 189 :GRPEDLGDDI T0371 270 :IVPTHICE 1lvhA 199 :VIVPDTSH Number of specific fragments extracted= 13 number of extra gaps= 0 total=802 Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f5sA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1f5sA expands to /projects/compbio/data/pdb/1f5s.pdb.gz 1f5sA:Skipped atom 82, because occupancy 0.500 <= existing 0.500 in 1f5sA Skipped atom 84, because occupancy 0.500 <= existing 0.500 in 1f5sA Skipped atom 86, because occupancy 0.500 <= existing 0.500 in 1f5sA Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 1f5sA Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 1f5sA Skipped atom 92, because occupancy 0.500 <= existing 0.500 in 1f5sA Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 1f5sA Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 1f5sA # T0371 read from 1f5sA/merged-good-all-a2m # 1f5sA read from 1f5sA/merged-good-all-a2m # adding 1f5sA to template set # found chain 1f5sA in template set T0371 11 :PKYKCIFFDAFGVLKTYN 1f5sA 3 :KKKKLILFDFDSTLVNNE T0371 61 :QLADSYHKLGL 1f5sA 21 :TIDEIAREAGV T0371 76 :ADKI 1f5sA 32 :EEEV T0371 83 :GMITKEYIDLKV 1f5sA 36 :KKITKEAMEGKL T0371 103 :GTANSANYLVSD 1f5sA 48 :NFEQSLRKRVSL T0371 115 :GIKM 1f5sA 62 :DLPI T0371 130 :GEVNALVL 1f5sA 66 :EKVEKAIK T0371 142 :GFNWFHDLNKTVNLLRKRTIPA 1f5sA 74 :RITPTEGAEETIKELKNRGYVV T0371 164 :IVANT 1f5sA 97 :VVSGG T0371 174 :L 1f5sA 102 :F T0371 183 :IGGVATMIES 1f5sA 103 :DIAVNKIKEK T0371 194 :LGRRFIR 1f5sA 113 :LGLDYAF T0371 203 :K 1f5sA 144 :K T0371 206 :SQMFMFAYDML 1f5sA 145 :GEILEKIAKIE T0371 221 :EISKREILMVGDT 1f5sA 156 :GINLEDTVAVGDG T0371 235 :HTDILGGNKFGLDTAL 1f5sA 169 :ANDISMFKKAGLKIAF T0371 256 :TRIDD 1f5sA 185 :CAKPI T0371 265 :IKST 1f5sA 190 :LKEK T0371 272 :PTHICESA 1f5sA 194 :ADICIEKR T0371 280 :VIEL 1f5sA 203 :LREI Number of specific fragments extracted= 20 number of extra gaps= 0 total=822 Number of alignments=58 # 1f5sA read from 1f5sA/merged-good-all-a2m # found chain 1f5sA in template set T0371 11 :PKYKCIFFDAFGVLKTYN 1f5sA 3 :KKKKLILFDFDSTLVNNE T0371 37 :TFDYLKAQ 1f5sA 21 :TIDEIARE T0371 45 :GQ 1f5sA 30 :GV T0371 59 :PEQLADSYHKLGLFSITAD 1f5sA 32 :EEEVKKITKEAMEGKLNFE T0371 105 :ANSANYLV 1f5sA 51 :QSLRKRVS T0371 123 :AIDDSNIGEVNALVL 1f5sA 59 :LLKDLPIEKVEKAIK T0371 142 :GFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAI 1f5sA 74 :RITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGL T0371 191 :ESI 1f5sA 116 :DYA T0371 194 :LGRRFIRF 1f5sA 130 :LTGDVEGE T0371 203 :KPDSQMFMFAYDMLRQKMEISKREILMVGDTLH 1f5sA 138 :VLKENAKGEILEKIAKIEGINLEDTVAVGDGAN T0371 237 :DILGGNKFG 1f5sA 171 :DISMFKKAG T0371 247 :DTALV 1f5sA 180 :LKIAF T0371 256 :TRIDDAETK 1f5sA 185 :CAKPILKEK T0371 272 :PTHICESA 1f5sA 194 :ADICIEKR T0371 280 :VIEL 1f5sA 203 :LREI Number of specific fragments extracted= 15 number of extra gaps= 0 total=837 Number of alignments=59 # 1f5sA read from 1f5sA/merged-good-all-a2m # found chain 1f5sA in template set T0371 14 :KCIFFDAFGVLKTYNGLLPGI 1f5sA 6 :KLILFDFDSTLVNNETIDEIA T0371 42 :KAQG 1f5sA 27 :REAG T0371 58 :SPEQLADSYHKLGLFSIT 1f5sA 31 :VEEEVKKITKEAMEGKLN T0371 82 :SGMITKEYIDLK 1f5sA 49 :FEQSLRKRVSLL T0371 125 :DDSNIGEVNALV 1f5sA 61 :KDLPIEKVEKAI T0371 141 :EGFNWFHDLNKTVNLLRKRTIPAIVANTD 1f5sA 73 :KRITPTEGAEETIKELKNRGYVVAVVSGG T0371 186 :VATMIESIL 1f5sA 102 :FDIAVNKIK T0371 195 :GRRFIR 1f5sA 135 :EGEVLK T0371 205 :DSQMFMFAYDML 1f5sA 144 :KGEILEKIAKIE T0371 221 :EISKREILMVGDTLH 1f5sA 156 :GINLEDTVAVGDGAN T0371 237 :DILGGNKFGLDTAL 1f5sA 171 :DISMFKKAGLKIAF T0371 256 :TRIDDAET 1f5sA 185 :CAKPILKE T0371 267 :STGIVPT 1f5sA 193 :KADICIE T0371 274 :HICESAVI 1f5sA 202 :DLREILKY Number of specific fragments extracted= 14 number of extra gaps= 0 total=851 Number of alignments=60 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b8eA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2b8eA expands to /projects/compbio/data/pdb/2b8e.pdb.gz 2b8eA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0371 read from 2b8eA/merged-good-all-a2m # 2b8eA read from 2b8eA/merged-good-all-a2m # adding 2b8eA to template set # found chain 2b8eA in template set Warning: unaligning (T0371)Y101 because of BadResidue code BAD_PEPTIDE in next template residue (2b8eA)D496 Warning: unaligning (T0371)L102 because of BadResidue code BAD_PEPTIDE at template residue (2b8eA)D496 Warning: unaligning (T0371)G103 because of BadResidue code BAD_PEPTIDE at template residue (2b8eA)G497 Warning: unaligning (T0371)H235 because of BadResidue code BAD_PEPTIDE in next template residue (2b8eA)N621 Warning: unaligning (T0371)T236 because of BadResidue code BAD_PEPTIDE at template residue (2b8eA)N621 Warning: unaligning (T0371)D237 because of BadResidue code BAD_PEPTIDE at template residue (2b8eA)D622 Warning: unaligning (T0371)V251 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2b8eA)S645 Warning: unaligning (T0371)L252 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2b8eA)S645 T0371 12 :KYKCIFFDAFGVLKTYNG 2b8eA 417 :KVTAVIFDKTGTLTKGKP T0371 30 :LL 2b8eA 441 :PL T0371 32 :PGIENTFDYLK 2b8eA 444 :GDERELLRLAA T0371 59 :PEQLADSYHKLGL 2b8eA 465 :AEAIVKKALEHGI T0371 73 :SITA 2b8eA 478 :ELGE T0371 77 :DKI 2b8eA 483 :EKV T0371 92 :LKVDGGIVA 2b8eA 486 :EVIAGEGVV T0371 108 :ANYLVSDGIKM 2b8eA 503 :KRLMEDFGVAV T0371 122 :SAIDDSNI 2b8eA 514 :SNEVELAL T0371 135 :LVLLDDE 2b8eA 532 :VIVARNG T0371 142 :GFNWFHDLNKTVNLLRKRTIPA 2b8eA 547 :SDTLKESAKPAVQELKRMGIKV T0371 164 :IVANT 2b8eA 570 :MITGD T0371 174 :L 2b8eA 575 :N T0371 184 :GGVATMIESILGRRFIRFG 2b8eA 576 :WRSAEAISRELNLDLVIAE T0371 206 :SQMFMFAYDMLRQ 2b8eA 597 :PHQKSEEVKKLQA T0371 221 :E 2b8eA 610 :K T0371 225 :REILMVGDT 2b8eA 611 :EVVAFVGDG T0371 238 :ILGGNKFGLDTAL 2b8eA 623 :APALAQADLGIAV T0371 253 :T 2b8eA 646 :G T0371 273 :THIC 2b8eA 647 :DIVL T0371 277 :ES 2b8eA 653 :DD T0371 280 :VIE 2b8eA 655 :LRD Number of specific fragments extracted= 22 number of extra gaps= 3 total=873 Number of alignments=61 # 2b8eA read from 2b8eA/merged-good-all-a2m # found chain 2b8eA in template set Warning: unaligning (T0371)L234 because of BadResidue code BAD_PEPTIDE in next template residue (2b8eA)N621 Warning: unaligning (T0371)H235 because of BadResidue code BAD_PEPTIDE at template residue (2b8eA)N621 Warning: unaligning (T0371)D237 because of BadResidue code BAD_PEPTIDE at template residue (2b8eA)D622 Warning: unaligning (T0371)L252 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2b8eA)S645 Warning: unaligning (T0371)T253 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2b8eA)S645 T0371 8 :SLLPKYKCIFFDAFGVLKT 2b8eA 413 :EVAEKVTAVIFDKTGTLTK T0371 27 :YNGLL 2b8eA 460 :SEHPI T0371 59 :PEQLADSYHKLGL 2b8eA 465 :AEAIVKKALEHGI T0371 73 :SIT 2b8eA 478 :ELG T0371 120 :PVSAIDDSNI 2b8eA 481 :EPEKVEVIAG T0371 130 :GEVNALVLLD 2b8eA 538 :GRVEGIIAVS T0371 143 :FNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAIG 2b8eA 548 :DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLD T0371 189 :MI 2b8eA 590 :LV T0371 194 :LG 2b8eA 592 :IA T0371 203 :KPDSQMFMFAYDMLRQ 2b8eA 594 :EVLPHQKSEEVKKLQA T0371 221 :EI 2b8eA 610 :KE T0371 226 :EILMVGDT 2b8eA 612 :VVAFVGDG T0371 238 :ILGGNKFGL 2b8eA 623 :APALAQADL T0371 248 :TALV 2b8eA 632 :GIAV T0371 254 :G 2b8eA 646 :G T0371 273 :THIC 2b8eA 647 :DIVL T0371 277 :ES 2b8eA 653 :DD T0371 280 :VIE 2b8eA 655 :LRD Number of specific fragments extracted= 18 number of extra gaps= 2 total=891 Number of alignments=62 # 2b8eA read from 2b8eA/merged-good-all-a2m # found chain 2b8eA in template set Warning: unaligning (T0371)L234 because of BadResidue code BAD_PEPTIDE in next template residue (2b8eA)N621 Warning: unaligning (T0371)H235 because of BadResidue code BAD_PEPTIDE at template residue (2b8eA)N621 Warning: unaligning (T0371)D237 because of BadResidue code BAD_PEPTIDE at template residue (2b8eA)D622 Warning: unaligning (T0371)L252 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2b8eA)S645 Warning: unaligning (T0371)T253 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2b8eA)S645 T0371 7 :KSLLPKYKCIFFDAFGVLKTYNG 2b8eA 412 :LEVAEKVTAVIFDKTGTLTKGKP T0371 35 :ENTFDYLK 2b8eA 447 :RELLRLAA T0371 104 :TANSANYLVSDGIKMLPVS 2b8eA 465 :AEAIVKKALEHGIELGEPE T0371 123 :AIDDSNIGEVNALVLLDDEG 2b8eA 520 :ALEKLEREAKTAVIVARNGR T0371 143 :FNWFHDLNKTVNLLRKRTIPAIVANT 2b8eA 548 :DTLKESAKPAVQELKRMGIKVGMITG T0371 182 :AIGGVATMIESILGRRFIRFGKPDSQMFMFAYDML 2b8eA 574 :DNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQ T0371 223 :SKREILMVGDT 2b8eA 609 :AKEVVAFVGDG T0371 239 :LGGNKFGLDTALV 2b8eA 623 :APALAQADLGIAV T0371 254 :G 2b8eA 646 :G T0371 269 :GIVP 2b8eA 647 :DIVL T0371 273 :THICESA 2b8eA 653 :DDLRDVV Number of specific fragments extracted= 11 number of extra gaps= 2 total=902 Number of alignments=63 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vj5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vj5A expands to /projects/compbio/data/pdb/1vj5.pdb.gz 1vj5A:# T0371 read from 1vj5A/merged-good-all-a2m # 1vj5A read from 1vj5A/merged-good-all-a2m # adding 1vj5A to template set # found chain 1vj5A in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1vj5A)T2 T0371 13 :YKCIFFDAFGVLKTYNGLL 1vj5A 3 :LRAAVFDLDGVLALPAVFG T0371 61 :QLADSYHKLGL 1vj5A 22 :VLGRTEEALAL T0371 75 :TADKIISSG 1vj5A 33 :PRGLLNDAF T0371 84 :MITKEYI 1vj5A 48 :GATTRLM T0371 91 :DLK 1vj5A 56 :GEI T0371 103 :GTANSANYLVSD 1vj5A 59 :TLSQWIPLMEEN T0371 115 :GIKMLPVSAIDDSNIGEVNA 1vj5A 79 :KVCLPKNFSIKEIFDKAISA T0371 143 :FNWFHDLNKTVNLLRKRTIPA 1vj5A 99 :RKINRPMLQAALMLRKKGFTT T0371 164 :IVANTDN 1vj5A 121 :ILTNTWL T0371 175 :TKTDVAIA 1vj5A 128 :DDRAERDG T0371 186 :VATMIESI 1vj5A 136 :LAQLMCEL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1vj5A 151 :IESCQVGMVKPEPQIYKFLLDTL T0371 221 :EISKREILMVGDT 1vj5A 174 :KASPSEVVFLDDI T0371 235 :HTDILGGNKFGLDTA 1vj5A 187 :GANLKPARDLGMVTI T0371 254 :GNTRIDDAETKIKS 1vj5A 202 :LVQDTDTALKELEK Number of specific fragments extracted= 15 number of extra gaps= 0 total=917 Number of alignments=64 # 1vj5A read from 1vj5A/merged-good-all-a2m # found chain 1vj5A in template set Warning: unaligning (T0371)P11 because first residue in template chain is (1vj5A)T2 T0371 13 :YKCIFFDAFGVLKT 1vj5A 3 :LRAAVFDLDGVLAL T0371 27 :YNGL 1vj5A 44 :GGPE T0371 32 :PGIENTF 1vj5A 48 :GATTRLM T0371 54 :DASRSPEQLADSY 1vj5A 55 :KGEITLSQWIPLM T0371 104 :TANSANYLVSDGIKMLPV 1vj5A 68 :EENCRKCSETAKVCLPKN T0371 130 :GEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1vj5A 86 :FSIKEIFDKAISARKINRPMLQAALMLRKKGFTTAILTN T0371 169 :DNTYPLTKTDVAIA 1vj5A 131 :AERDGLAQLMCELK T0371 185 :GVATMI 1vj5A 145 :MHFDFL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1vj5A 151 :IESCQVGMVKPEPQIYKFLLDTL T0371 221 :EISKREILMVGDT 1vj5A 174 :KASPSEVVFLDDI T0371 235 :HTDILGGNKFGLDTALV 1vj5A 187 :GANLKPARDLGMVTILV T0371 256 :TRIDDAETKIKS 1vj5A 204 :QDTDTALKELEK Number of specific fragments extracted= 12 number of extra gaps= 0 total=929 Number of alignments=65 # 1vj5A read from 1vj5A/merged-good-all-a2m # found chain 1vj5A in template set T0371 13 :YKCIFFDAFGVLKT 1vj5A 3 :LRAAVFDLDGVLAL T0371 27 :YNGLLPGIEN 1vj5A 19 :VFGVLGRTEE T0371 37 :TFDYLKAQG 1vj5A 36 :LLNDAFQKG T0371 55 :ASRSPEQLADSYHK 1vj5A 56 :GEITLSQWIPLMEE T0371 106 :NSANYLVSDGIKMLP 1vj5A 70 :NCRKCSETAKVCLPK T0371 129 :IGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1vj5A 85 :NFSIKEIFDKAISARKINRPMLQAALMLRKKGFTTAILTN T0371 171 :TYPLTKT 1vj5A 125 :TWLDDRA T0371 182 :AIGGVATMIESIL 1vj5A 132 :ERDGLAQLMCELK T0371 199 :IRFGKPDSQMFMFAYDML 1vj5A 156 :VGMVKPEPQIYKFLLDTL T0371 221 :EISKREILMVGDTLH 1vj5A 174 :KASPSEVVFLDDIGA T0371 237 :DILGGNKFGLDTALV 1vj5A 189 :NLKPARDLGMVTILV Number of specific fragments extracted= 11 number of extra gaps= 0 total=940 Number of alignments=66 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1o08A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0371 read from 1o08A/merged-good-all-a2m # 1o08A read from 1o08A/merged-good-all-a2m # found chain 1o08A in training set Warning: unaligning (T0371)K12 because first residue in template chain is (1o08A)M1001 Warning: unaligning (T0371)F18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o08A)D1008 Warning: unaligning (T0371)D19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o08A)D1008 T0371 13 :YKCIF 1o08A 1002 :FKAVL T0371 20 :AFGVLKTYNGLL 1o08A 1009 :LDGVITDTAEYH T0371 59 :PEQLADSYHKLGLFSITADKI 1o08A 1021 :FRAWKALAEEIGINGVDRQFN T0371 97 :GIVAYLGTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDE 1o08A 1042 :EQLKGVSREDSLQKILDLADKKVSAEEFKELAKRKNDNYVKMIQD T0371 142 :GFNWFHDLNKTVNLLRKRTIPAIVANTDNTY 1o08A 1089 :PADVYPGILQLLKDLRSNKIKIALASASKNG T0371 175 :TKTDVAIA 1o08A 1120 :PFLLERMN T0371 186 :VATMIESILGRRFIRFGKPDSQMFMFAYDML 1o08A 1128 :LTGYFDAIADPAEVAASKPAPDIFIAAAHAV T0371 221 :EISKREILMVGDT 1o08A 1159 :GVAPSESIGLEDS T0371 235 :HTDILGGNKFGLDTALVL 1o08A 1172 :QAGIQAIKDSGALPIGVG T0371 257 :RIDD 1o08A 1190 :RPED T0371 265 :IKS 1o08A 1194 :LGD T0371 272 :PTHICES 1o08A 1197 :DIVIVPD T0371 280 :VIEL 1o08A 1204 :TSHY Number of specific fragments extracted= 13 number of extra gaps= 1 total=953 Number of alignments=67 # 1o08A read from 1o08A/merged-good-all-a2m # found chain 1o08A in training set Warning: unaligning (T0371)K12 because first residue in template chain is (1o08A)M1001 Warning: unaligning (T0371)F18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o08A)D1008 Warning: unaligning (T0371)D19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o08A)D1008 T0371 13 :YKCIF 1o08A 1002 :FKAVL T0371 20 :AFGVLKTYN 1o08A 1009 :LDGVITDTA T0371 32 :PGIENTFDYL 1o08A 1018 :EYHFRAWKAL T0371 66 :YHKLGLFSITADKI 1o08A 1028 :AEEIGINGVDRQFN T0371 97 :GIVAYLGTANSANYLVSD 1o08A 1042 :EQLKGVSREDSLQKILDL T0371 121 :VSAIDDSNI 1o08A 1060 :ADKKVSAEE T0371 130 :GEVNALVLLDDEGFN 1o08A 1074 :KRKNDNYVKMIQDVS T0371 145 :WFHDLNKTVNLLRKRTIPAIVANTDNTY 1o08A 1092 :VYPGILQLLKDLRSNKIKIALASASKNG T0371 175 :TKTDVAIAIGGVATMI 1o08A 1120 :PFLLERMNLTGYFDAI T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1o08A 1136 :ADPAEVAASKPAPDIFIAAAHAV T0371 221 :EISKREILMVGDTLH 1o08A 1159 :GVAPSESIGLEDSQA T0371 237 :DILGGNKFGLDTALV 1o08A 1174 :GIQAIKDSGALPIGV T0371 256 :TRIDDAET 1o08A 1189 :GRPEDLGD T0371 272 :PTHICES 1o08A 1197 :DIVIVPD T0371 280 :VIEL 1o08A 1204 :TSHY Number of specific fragments extracted= 15 number of extra gaps= 1 total=968 Number of alignments=68 # 1o08A read from 1o08A/merged-good-all-a2m # found chain 1o08A in training set Warning: unaligning (T0371)F18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o08A)D1008 Warning: unaligning (T0371)D19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o08A)D1008 T0371 13 :YKCIF 1o08A 1002 :FKAVL T0371 20 :AFGVLKT 1o08A 1009 :LDGVITD T0371 30 :LLPGIENTFDYLK 1o08A 1016 :TAEYHFRAWKALA T0371 43 :AQGQD 1o08A 1030 :EIGIN T0371 55 :ASRSPEQLADSYHKLGLFSITADKIISSGMITKEYIDLKVDGG 1o08A 1045 :KGVSREDSLQKILDLADKKVSAEEFKELAKRKNDNYVKMIQDV T0371 141 :EGFNWFHDLNKTVNLLRKRTIPAIVANT 1o08A 1088 :SPADVYPGILQLLKDLRSNKIKIALASA T0371 174 :LTK 1o08A 1116 :SKN T0371 186 :VATMIESIL 1o08A 1119 :GPFLLERMN T0371 195 :GRRFIRFGKPDSQMFMFAYDML 1o08A 1137 :DPAEVAASKPAPDIFIAAAHAV T0371 221 :EISKREILMVGDTLH 1o08A 1159 :GVAPSESIGLEDSQA T0371 237 :DILGGNKFGLDTALV 1o08A 1174 :GIQAIKDSGALPIGV T0371 256 :TRIDDAETKI 1o08A 1189 :GRPEDLGDDI T0371 270 :IVPTHICE 1o08A 1199 :VIVPDTSH Number of specific fragments extracted= 13 number of extra gaps= 1 total=981 Number of alignments=69 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xviA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xviA expands to /projects/compbio/data/pdb/1xvi.pdb.gz 1xviA:Skipped atom 342, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 346, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 633, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 637, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 639, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 641, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 643, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 645, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 656, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 660, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 662, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 664, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 666, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 718, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 722, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 724, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 1061, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 1065, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 1067, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 1069, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 1071, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 1073, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 1392, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 1396, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 1398, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 1400, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 1402, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 1404, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 1406, because occupancy 0.500 <= existing 0.500 in 1xviA Skipped atom 1408, because occupancy 0.500 <= existing 0.500 in 1xviA # T0371 read from 1xviA/merged-good-all-a2m # 1xviA read from 1xviA/merged-good-all-a2m # adding 1xviA to template set # found chain 1xviA in template set Warning: unaligning (T0371)L10 because first residue in template chain is (1xviA)I4 Warning: unaligning (T0371)G29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xviA)Y24 Warning: unaligning (T0371)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xviA)Y24 Warning: unaligning (T0371)I90 because of BadResidue code BAD_PEPTIDE in next template residue (1xviA)E80 Warning: unaligning (T0371)D91 because of BadResidue code BAD_PEPTIDE at template residue (1xviA)E80 T0371 11 :PKYKCIFFDAFGVLKTYN 1xviA 5 :QQPLLVFSDLDGTLLDSH T0371 31 :L 1xviA 25 :D T0371 32 :PGIENTFDYLKAQGQDYYIVT 1xviA 27 :QPAAPWLTRLREANVPVILCS T0371 56 :SRSPEQLADSYHKLGLFSIT 1xviA 48 :SKTSAEMLYLQKTLGLQGLP T0371 79 :IISSGMITKEY 1xviA 68 :LIAENGAVIQL T0371 92 :LKV 1xviA 81 :QWQ T0371 95 :DGGIVAYLGTANSANYLVSD 1xviA 88 :FPRIISGISHGEISLVLNTL T0371 115 :GIKMLPVSAIDDSNI 1xviA 112 :HFKFTTFDDVDDATI T0371 130 :GEVNALVLLDDEGFN 1xviA 141 :QLHEASVTLIWRDSD T0371 147 :HDLNKTVNLLRKRTIPA 1xviA 156 :ERMAQFTARLNELGLQF T0371 173 :PLTKTDVAI 1xviA 174 :QGARFWHVL T0371 198 :FIRFGK 1xviA 183 :DASAGK T0371 206 :SQMFMFAYDMLRQKMEISKR 1xviA 189 :DQAANWIIATYQQLSGKRPT T0371 227 :ILMVGDT 1xviA 209 :TLGLGDG T0371 235 :HTDILG 1xviA 216 :PNDAPL Number of specific fragments extracted= 15 number of extra gaps= 2 total=996 Number of alignments=70 # 1xviA read from 1xviA/merged-good-all-a2m # found chain 1xviA in template set Warning: unaligning (T0371)L10 because first residue in template chain is (1xviA)I4 Warning: unaligning (T0371)Y89 because of BadResidue code BAD_PEPTIDE in next template residue (1xviA)E80 Warning: unaligning (T0371)I90 because of BadResidue code BAD_PEPTIDE at template residue (1xviA)E80 T0371 11 :PKYKCIFFDAFGVLKTYN 1xviA 5 :QQPLLVFSDLDGTLLDSH T0371 29 :GLLPGIENT 1xviA 28 :PAAPWLTRL T0371 42 :KAQGQDYYIVTNDA 1xviA 37 :REANVPVILCSSKT T0371 59 :PEQLADSYHKLGLFSITA 1xviA 51 :SAEMLYLQKTLGLQGLPL T0371 79 :IISSGMITKE 1xviA 69 :IAENGAVIQL T0371 91 :DLK 1xviA 81 :QWQ T0371 94 :VDGGIVAYLGTANSANYLVSD 1xviA 87 :GFPRIISGISHGEISLVLNTL T0371 115 :GIKMLPVSAIDDSNI 1xviA 112 :HFKFTTFDDVDDATI T0371 132 :VNALVLLDDEGF 1xviA 143 :HEASVTLIWRDS T0371 146 :FHDLNKTVNLLRKRT 1xviA 155 :DERMAQFTARLNELG T0371 161 :IPAIVANTDNTYP 1xviA 176 :ARFWHVLDASAGK T0371 206 :SQMFMFAYDMLRQKMEISKR 1xviA 189 :DQAANWIIATYQQLSGKRPT T0371 227 :ILMVGDTLH 1xviA 209 :TLGLGDGPN T0371 237 :DILGGNKF 1xviA 218 :DAPLLEVM Number of specific fragments extracted= 14 number of extra gaps= 1 total=1010 Number of alignments=71 # 1xviA read from 1xviA/merged-good-all-a2m # found chain 1xviA in template set Warning: unaligning (T0371)G29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xviA)Y24 T0371 12 :KYKCIFFDAFGVLKTYN 1xviA 6 :QPLLVFSDLDGTLLDSH T0371 30 :LLPGIE 1xviA 29 :AAPWLT T0371 40 :YLKAQGQDYYIVTNDA 1xviA 35 :RLREANVPVILCSSKT T0371 83 :GMITKEYIDLK 1xviA 51 :SAEMLYLQKTL T0371 94 :VDGGIVAYLG 1xviA 63 :LQGLPLIAEN T0371 125 :DDSNIGEVNALVLLDDEG 1xviA 136 :QAALTQLHEASVTLIWRD T0371 145 :WFHDLNKTVNLLRKRT 1xviA 154 :SDERMAQFTARLNELG T0371 167 :NTDNTYPLTKT 1xviA 175 :GARFWHVLDAS T0371 184 :GGV 1xviA 186 :AGK T0371 206 :SQMFMFAYDMLRQKMEISK 1xviA 189 :DQAANWIIATYQQLSGKRP T0371 227 :ILMVGDTLH 1xviA 209 :TLGLGDGPN Number of specific fragments extracted= 11 number of extra gaps= 1 total=1021 Number of alignments=72 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wzcA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wzcA expands to /projects/compbio/data/pdb/1wzc.pdb.gz 1wzcA:# T0371 read from 1wzcA/merged-good-all-a2m # 1wzcA read from 1wzcA/merged-good-all-a2m # adding 1wzcA to template set # found chain 1wzcA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1wzcA)M1 Warning: unaligning (T0371)D95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wzcA)Y87 Warning: unaligning (T0371)G97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wzcA)Y87 T0371 13 :YKCIFFDAFGVLKTYNG 1wzcA 2 :IRLIFLDIDKTLIPGYE T0371 31 :LPGIENTFDYLKAQGQDYYIVT 1wzcA 19 :PDPAKPIIEELKDMGFEIIFNS T0371 56 :SRSPEQLADSYHKLGL 1wzcA 41 :SKTRAEQEYYRKELEV T0371 73 :SIT 1wzcA 57 :ETP T0371 79 :IISSGMITKEYIDLKV 1wzcA 60 :FISENGSAIFIPKGYF T0371 98 :IVA 1wzcA 88 :IVI T0371 101 :YLGTANSANYLVSD 1wzcA 93 :GIRVEKIREELKKL T0371 115 :GIKMLPVSAIDDSNI 1wzcA 111 :GLKYYGNSTKEEIEK T0371 130 :GEVNALVLLDDEGF 1wzcA 141 :EYSETIFEWSRDGW T0371 150 :N 1wzcA 155 :E T0371 154 :NLLRKRTIPA 1wzcA 156 :EVLVEGGFKV T0371 173 :PLTKTDVAIA 1wzcA 167 :MGSRFYTVHG T0371 200 :RFGK 1wzcA 177 :NSDK T0371 206 :SQMFMFAYDMLRQKME 1wzcA 181 :GKAAKILLDFYKRLGQ T0371 226 :EILMVGDT 1wzcA 198 :ESYAVGDS T0371 235 :HTDILGGNK 1wzcA 206 :YNDFPMFEV T0371 246 :LDTALVL 1wzcA 215 :VDKVFIV T0371 254 :GNTRIDD 1wzcA 222 :GSLKHKK T0371 272 :PTHI 1wzcA 229 :AQNV T0371 277 :ES 1wzcA 233 :SS T0371 280 :VIE 1wzcA 235 :IID Number of specific fragments extracted= 21 number of extra gaps= 0 total=1042 Number of alignments=73 # 1wzcA read from 1wzcA/merged-good-all-a2m # found chain 1wzcA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1wzcA)M1 Warning: unaligning (T0371)S267 because last residue in template chain is (1wzcA)H244 T0371 13 :YKCIFFDAFGVLKTYNGL 1wzcA 2 :IRLIFLDIDKTLIPGYEP T0371 32 :PGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSY 1wzcA 20 :DPAKPIIEELKDMGFEIIFNSSKTRAEQEYYRKEL T0371 73 :SITADKIISSGMITKE 1wzcA 55 :EVETPFISENGSAIFI T0371 97 :GIVAYL 1wzcA 88 :IVIELG T0371 103 :GTANSANYLVSD 1wzcA 95 :RVEKIREELKKL T0371 115 :GIKMLPVSAI 1wzcA 111 :GLKYYGNSTK T0371 130 :GEVNALVLLDDEGFN 1wzcA 121 :EEIEKFTGMPPELVP T0371 146 :FHDLNK 1wzcA 151 :RDGWEE T0371 155 :LLRKRTIPA 1wzcA 157 :VLVEGGFKV T0371 194 :LGRRFIRFGKPD 1wzcA 168 :GSRFYTVHGNSD T0371 209 :FMFAYDMLRQKM 1wzcA 180 :KGKAAKILLDFY T0371 221 :E 1wzcA 196 :Q T0371 226 :EILMVGDTLH 1wzcA 198 :ESYAVGDSYN T0371 237 :DILGGNKFG 1wzcA 208 :DFPMFEVVD T0371 247 :DTALVLTGNTR 1wzcA 217 :KVFIVGSLKHK T0371 258 :IDDAETKIK 1wzcA 235 :IIDVLEVIK Number of specific fragments extracted= 16 number of extra gaps= 0 total=1058 Number of alignments=74 # 1wzcA read from 1wzcA/merged-good-all-a2m # found chain 1wzcA in template set T0371 14 :KCIFFDAFGVLKTYNGL 1wzcA 3 :RLIFLDIDKTLIPGYEP T0371 32 :PGIENTFDYLKAQGQDYYIVTNDA 1wzcA 20 :DPAKPIIEELKDMGFEIIFNSSKT T0371 83 :GMITKEYIDLK 1wzcA 44 :RAEQEYYRKEL T0371 123 :AIDDSNIGEVNALVLLDDEGFNWFH 1wzcA 132 :ELVPLAMEREYSETIFEWSRDGWEE T0371 155 :LLRKRTIP 1wzcA 157 :VLVEGGFK T0371 171 :TYPLTKTDVAIAIGGVATMI 1wzcA 165 :VTMGSRFYTVHGNSDKGKAA T0371 210 :MFAYDMLRQKMEI 1wzcA 185 :KILLDFYKRLGQI T0371 226 :EILMVGDTLH 1wzcA 198 :ESYAVGDSYN T0371 237 :DILG 1wzcA 208 :DFPM T0371 246 :LDTALVLTGNTRI 1wzcA 215 :VDKVFIVGSLKHK T0371 268 :TGIVPTHICESAVI 1wzcA 228 :KAQNVSSIIDVLEV Number of specific fragments extracted= 11 number of extra gaps= 0 total=1069 Number of alignments=75 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1l6rA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0371 read from 1l6rA/merged-good-all-a2m # 1l6rA read from 1l6rA/merged-good-all-a2m # found chain 1l6rA in training set Warning: unaligning (T0371)P11 because first residue in template chain is (1l6rA)H0 T0371 12 :KYKCIFFDAFGVLKTYNGLL 1l6rA 1 :MIRLAAIDVDGNLTDRDRLI T0371 32 :PGIENTFDYLKAQGQDYYIVT 1l6rA 22 :TKAIESIRSAEKKGLTVSLLS T0371 56 :SRSPEQLADSYHKLGL 1l6rA 43 :GNVIPVVYALKIFLGI T0371 73 :SIT 1l6rA 59 :NGP T0371 79 :IISSGMITKEY 1l6rA 62 :VFGENGGIMFD T0371 94 :VDGGIVAYLGTANSANYLVSD 1l6rA 73 :NDGSIKKFFSNEGTNKFLEEM T0371 115 :GIKM 1l6rA 96 :RTSM T0371 124 :IDDSNIGEVNALVLLDDEG 1l6rA 100 :RSILTNRWREASTGFDIDP T0371 144 :NWFHDLN 1l6rA 119 :EDVDYVR T0371 154 :NLLRKRTI 1l6rA 126 :KEAESRGF T0371 199 :IR 1l6rA 134 :VI T0371 201 :FGK 1l6rA 147 :RGE T0371 209 :FMFAYDMLRQKMEISKREILMVGDT 1l6rA 151 :KAFAVNKLKEMYSLEYDEILVIGDS T0371 235 :HTDILGG 1l6rA 176 :NNDMPMF T0371 245 :GLDTALVL 1l6rA 183 :QLPVRKAC T0371 254 :GNTRIDDAETK 1l6rA 191 :PANATDNIKAV T0371 272 :PTHICE 1l6rA 202 :SDFVSD Number of specific fragments extracted= 17 number of extra gaps= 0 total=1086 Number of alignments=76 # 1l6rA read from 1l6rA/merged-good-all-a2m # found chain 1l6rA in training set Warning: unaligning (T0371)P11 because first residue in template chain is (1l6rA)H0 T0371 12 :KYKCIFFDAFGVLKTYNGLL 1l6rA 1 :MIRLAAIDVDGNLTDRDRLI T0371 32 :PGIENTFDYLKAQGQDYYIVTNDA 1l6rA 22 :TKAIESIRSAEKKGLTVSLLSGNV T0371 59 :PEQLADSYHKLGLF 1l6rA 46 :IPVVYALKIFLGIN T0371 74 :IT 1l6rA 60 :GP T0371 78 :KIISSGMITKE 1l6rA 62 :VFGENGGIMFD T0371 94 :VDGGIVAYLGTANSANYLVSDG 1l6rA 73 :NDGSIKKFFSNEGTNKFLEEMS T0371 116 :IKMLPVSAI 1l6rA 99 :MRSILTNRW T0371 130 :GEVNALVLLDDEG 1l6rA 108 :REASTGFDIDPED T0371 146 :FHDLN 1l6rA 121 :VDYVR T0371 154 :NLLRKRT 1l6rA 126 :KEAESRG T0371 165 :VANTDNTY 1l6rA 143 :HLMNRGED T0371 209 :FMFAYDMLRQKMEISKREILMVGDT 1l6rA 151 :KAFAVNKLKEMYSLEYDEILVIGDS T0371 235 :HTDILGGN 1l6rA 176 :NNDMPMFQ T0371 244 :FGLDTAL 1l6rA 184 :LPVRKAC T0371 254 :GNTRIDDAETK 1l6rA 191 :PANATDNIKAV T0371 272 :PTHICES 1l6rA 202 :SDFVSDY Number of specific fragments extracted= 16 number of extra gaps= 0 total=1102 Number of alignments=77 # 1l6rA read from 1l6rA/merged-good-all-a2m # found chain 1l6rA in training set T0371 13 :YKCIFFDAFGVLKTYNG 1l6rA 2 :IRLAAIDVDGNLTDRDR T0371 30 :LLPGIENTFDYLKAQGQDYYIVTNDA 1l6rA 20 :ISTKAIESIRSAEKKGLTVSLLSGNV T0371 59 :PEQLADSYHKLGL 1l6rA 46 :IPVVYALKIFLGI T0371 96 :GGIVAY 1l6rA 59 :NGPVFG T0371 132 :VNALVLLDDEG 1l6rA 65 :ENGGIMFDNDG T0371 143 :FNWFHDLNKTVNLLRKRT 1l6rA 80 :FFSNEGTNKFLEEMSKRT T0371 168 :TDNTYPLTKT 1l6rA 110 :ASTGFDIDPE T0371 182 :AIGGVATMIESIL 1l6rA 120 :DVDYVRKEAESRG T0371 196 :RRF 1l6rA 147 :RGE T0371 209 :FMFAYDMLRQKMEISKREILMVGDTLH 1l6rA 151 :KAFAVNKLKEMYSLEYDEILVIGDSNN T0371 237 :D 1l6rA 178 :D T0371 239 :LGGNKFGLDTAL 1l6rA 179 :MPMFQLPVRKAC Number of specific fragments extracted= 12 number of extra gaps= 0 total=1114 Number of alignments=78 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ah5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2ah5A expands to /projects/compbio/data/pdb/2ah5.pdb.gz 2ah5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0371 read from 2ah5A/merged-good-all-a2m # 2ah5A read from 2ah5A/merged-good-all-a2m # adding 2ah5A to template set # found chain 2ah5A in template set Warning: unaligning (T0371)L10 because first residue in template chain is (2ah5A)M1 Warning: unaligning (T0371)N167 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ah5A)K108 Warning: unaligning (T0371)T168 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ah5A)K108 T0371 11 :PKYKCIFFDAFGVLKTYNGLL 2ah5A 2 :TSITAIFFDLDGTLVDSSIGI T0371 59 :PEQLADSYHKLGLFSITADKIISS 2ah5A 23 :HNAFTYTFKELGVPSPDAKTIRGF T0371 83 :GMITKEYIDLKVDG 2ah5A 48 :GPPLESSFATCLSK T0371 102 :LGTANSANYLVS 2ah5A 62 :DQISEAVQIYRS T0371 134 :ALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVA 2ah5A 74 :YYKAKGIYEAQLFPQIIDLLEELSSSYPLYITT T0371 169 :DNTY 2ah5A 109 :DTST T0371 174 :LTKTDVAIA 2ah5A 113 :AQDMAKNLE T0371 186 :VATMIESILGRRFIRFGK 2ah5A 122 :IHHFFDGIYGSSPEAPHK T0371 206 :SQMFMFAYDML 2ah5A 140 :ADVIHQALQTH T0371 221 :EISKREILMVGDT 2ah5A 151 :QLAPEQAIIIGDT T0371 235 :HTDILGGNKFGLDTALVLTGNTRIDD 2ah5A 164 :KFDMLGARETGIQKLAITWGFGEQAD T0371 265 :IKSTG 2ah5A 190 :LLNYQ T0371 272 :PTHICESAVI 2ah5A 195 :PDYIAHKPLE Number of specific fragments extracted= 13 number of extra gaps= 1 total=1127 Number of alignments=79 # 2ah5A read from 2ah5A/merged-good-all-a2m # found chain 2ah5A in template set Warning: unaligning (T0371)L10 because first residue in template chain is (2ah5A)M1 Warning: unaligning (T0371)T168 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ah5A)K108 Warning: unaligning (T0371)D169 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ah5A)K108 T0371 11 :PKYKCIFFDAFGVLKTYN 2ah5A 2 :TSITAIFFDLDGTLVDSS T0371 32 :PGIENTFDYL 2ah5A 20 :IGIHNAFTYT T0371 63 :ADSY 2ah5A 30 :FKEL T0371 70 :GLFSITADKIISSGMITKE 2ah5A 34 :GVPSPDAKTIRGFMGPPLE T0371 89 :YIDLKVD 2ah5A 54 :SFATCLS T0371 101 :YLGTANSANYLVSD 2ah5A 61 :KDQISEAVQIYRSY T0371 135 :LVLLDDEGFNWFHDLNKTVNLLRKR 2ah5A 75 :YKAKGIYEAQLFPQIIDLLEELSSS T0371 161 :IPAIVAN 2ah5A 100 :YPLYITT T0371 170 :NTYPLTKTDVAIAIGGVATMI 2ah5A 109 :DTSTAQDMAKNLEIHHFFDGI T0371 194 :LGRRF 2ah5A 130 :YGSSP T0371 202 :GKPD 2ah5A 135 :EAPH T0371 209 :FMFAYDMLRQKMEISKREILMVGDTLH 2ah5A 139 :KADVIHQALQTHQLAPEQAIIIGDTKF T0371 237 :DILGGNKFGLDTALVLTGNTRIDDAETKI 2ah5A 166 :DMLGARETGIQKLAITWGFGEQADLLNYQ T0371 272 :PTHICESAV 2ah5A 195 :PDYIAHKPL Number of specific fragments extracted= 14 number of extra gaps= 1 total=1141 Number of alignments=80 # 2ah5A read from 2ah5A/merged-good-all-a2m # found chain 2ah5A in template set Warning: unaligning (T0371)N167 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ah5A)K108 Warning: unaligning (T0371)T168 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ah5A)K108 T0371 11 :PKYKCIFFDAFGVLKT 2ah5A 2 :TSITAIFFDLDGTLVD T0371 30 :LLPGIENTFDYLK 2ah5A 18 :SSIGIHNAFTYTF T0371 43 :AQGQD 2ah5A 32 :ELGVP T0371 56 :SRSPEQLAD 2ah5A 37 :SPDAKTIRG T0371 66 :YHKLGLFSITADKIISSGMITKEYIDLK 2ah5A 51 :LESSFATCLSKDQISEAVQIYRSYYKAK T0371 139 :DDEGFNWFHDLNKTVNLLRKRTIPAIVA 2ah5A 79 :GIYEAQLFPQIIDLLEELSSSYPLYITT T0371 182 :AIGGVATMIESIL 2ah5A 109 :DTSTAQDMAKNLE T0371 195 :GRRF 2ah5A 133 :SPEA T0371 205 :D 2ah5A 138 :H T0371 206 :SQMFMFAYDML 2ah5A 140 :ADVIHQALQTH T0371 221 :EISKREILMVGDTLH 2ah5A 151 :QLAPEQAIIIGDTKF T0371 237 :DILGGNKFGLDTALVLTGNTRIDDAET 2ah5A 166 :DMLGARETGIQKLAITWGFGEQADLLN T0371 266 :KSTGIVPTHICESA 2ah5A 193 :YQPDYIAHKPLEVL Number of specific fragments extracted= 13 number of extra gaps= 1 total=1154 Number of alignments=81 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zs9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zs9A expands to /projects/compbio/data/pdb/1zs9.pdb.gz 1zs9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0371 read from 1zs9A/merged-good-all-a2m # 1zs9A read from 1zs9A/merged-good-all-a2m # adding 1zs9A to template set # found chain 1zs9A in template set Warning: unaligning (T0371)G115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zs9A)K106 Warning: unaligning (T0371)K117 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zs9A)K106 T0371 11 :PKYKCIFFDAFGVLKTYNGL 1zs9A 8 :AEVTVILLDIEGTTTPIAFV T0371 32 :PGIENTF 1zs9A 29 :DILFPYI T0371 59 :PEQLADSYHK 1zs9A 36 :EENVKEYLQT T0371 69 :LGL 1zs9A 47 :WEE T0371 77 :DKIISSGMITKEYI 1zs9A 50 :EECQQDVSLLRKQA T0371 91 :DLKVDGGIVAY 1zs9A 65 :EDAHLDGAVPI T0371 102 :LGTANSANYLV 1zs9A 88 :QMIQAVVDNVC T0371 113 :SD 1zs9A 102 :SL T0371 118 :M 1zs9A 107 :T T0371 122 :SAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1zs9A 108 :TALKQLQGHMWRAAFTAGRMKAEFFADVVPAVRKWREAGMKVYIYSS T0371 174 :L 1zs9A 155 :G T0371 186 :VATMIESILGRRFIR 1zs9A 156 :SVEAQKLLFGHSTEG T0371 201 :FGKPDSQMFMFAYDML 1zs9A 185 :GHKVESESYRKIADSI T0371 221 :EISKREILMVGDT 1zs9A 201 :GCSTNNILFLTDV T0371 235 :HTDILGGNKFGLDTALVLTGNTR 1zs9A 214 :TREASAAEEADVHVAVVVRPGNA T0371 258 :IDDAETKIK 1zs9A 239 :TDDEKTYYS T0371 275 :ICES 1zs9A 248 :LITS T0371 280 :VIEL 1zs9A 252 :FSEL Number of specific fragments extracted= 18 number of extra gaps= 0 total=1172 Number of alignments=82 # 1zs9A read from 1zs9A/merged-good-all-a2m # found chain 1zs9A in template set T0371 10 :LPKYKCIFFDAFGVLKT 1zs9A 7 :PAEVTVILLDIEGTTTP T0371 32 :PGIENTF 1zs9A 29 :DILFPYI T0371 59 :PEQLADSYHKL 1zs9A 36 :EENVKEYLQTH T0371 95 :DGGIVAYLGTANSANYLVSDG 1zs9A 47 :WEEEECQQDVSLLRKQAEEDA T0371 116 :IKMLPVSAIDDSNI 1zs9A 73 :VPIPAASGNGVDDL T0371 130 :GEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAIGGVATMIESILGRRFIRFGK 1zs9A 116 :HMWRAAFTAGRMKAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKIGHKVE T0371 206 :SQMFMFAYDML 1zs9A 190 :SESYRKIADSI T0371 221 :EISKREILMVGDTLH 1zs9A 201 :GCSTNNILFLTDVTR T0371 237 :DILGGNKFGLDTALVLTGNTR 1zs9A 216 :EASAAEEADVHVAVVVRPGNA T0371 258 :IDDAETKI 1zs9A 239 :TDDEKTYY T0371 274 :HICES 1zs9A 247 :SLITS T0371 280 :VIEL 1zs9A 252 :FSEL Number of specific fragments extracted= 12 number of extra gaps= 0 total=1184 Number of alignments=83 # 1zs9A read from 1zs9A/merged-good-all-a2m # found chain 1zs9A in template set T0371 11 :PKYKCIFFDAFGVLKTYNGLLPGIENTFDY 1zs9A 8 :AEVTVILLDIEGTTTPIAFVKDILFPYIEE T0371 61 :QLADSYHKLGL 1zs9A 38 :NVKEYLQTHWE T0371 76 :ADKIISSGMITKEYIDLK 1zs9A 49 :EEECQQDVSLLRKQAEED T0371 119 :LPVS 1zs9A 67 :AHLD T0371 123 :AIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1zs9A 109 :ALKQLQGHMWRAAFTAGRMKAEFFADVVPAVRKWREAGMKVYIYSS T0371 182 :AIGGVATMIESILGRRFIR 1zs9A 155 :GSVEAQKLLFGHSTEGDIL T0371 201 :FGKPDSQMFMFAYDML 1zs9A 185 :GHKVESESYRKIADSI T0371 221 :EISKREILMVGDTLH 1zs9A 201 :GCSTNNILFLTDVTR T0371 237 :DILGGNKFGLDTALVLTGNT 1zs9A 216 :EASAAEEADVHVAVVVRPGN T0371 257 :RIDDAETK 1zs9A 239 :TDDEKTYY T0371 270 :IVPTHICES 1zs9A 247 :SLITSFSEL Number of specific fragments extracted= 11 number of extra gaps= 0 total=1195 Number of alignments=84 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1x42A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1x42A expands to /projects/compbio/data/pdb/1x42.pdb.gz 1x42A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0371 read from 1x42A/merged-good-all-a2m # 1x42A read from 1x42A/merged-good-all-a2m # adding 1x42A to template set # found chain 1x42A in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1x42A)M1 T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENTFDYLKA 1x42A 2 :IRAVFFDFVGTLLSVEGEAKTHLKIMEEVLG T0371 45 :GQ 1x42A 33 :DY T0371 56 :SRSPEQLADSYHKL 1x42A 35 :PLNPKTLLDEYEKL T0371 82 :SGMITKEYIDLKV 1x42A 49 :TREAFSNYAGKPY T0371 97 :GIVAYLGTANSANYLVSDGIKM 1x42A 62 :RPIRDIEEEVMRKLAEKYGFKY T0371 128 :NIGEVNALVLLDDEGFNWFHDLNKTVNLLRK 1x42A 84 :PENFWEIHLRMHQRYGELYPEVVEVLKSLKG T0371 160 :TIPA 1x42A 115 :KYHV T0371 164 :IVANTDNTY 1x42A 120 :MITDSDTEY T0371 174 :LTKTDVAIA 1x42A 129 :LMAHLDALG T0371 186 :VATMIESILGRRFIRFGKPDSQMFMFAYDML 1x42A 138 :IKDLFDSITTSEEAGFFKPHPRIFELALKKA T0371 221 :EISKREILMVGDTLHTDILGGNKFGLDTALVL 1x42A 169 :GVKGEEAVYVGDNPVKDCGGSKNLGMTSILLD T0371 254 :GNTRIDDAETK 1x42A 201 :RKGEKREFWDK T0371 272 :PTHICES 1x42A 212 :CDFIVSD T0371 280 :VIEL 1x42A 219 :LREV Number of specific fragments extracted= 14 number of extra gaps= 0 total=1209 Number of alignments=85 # 1x42A read from 1x42A/merged-good-all-a2m # found chain 1x42A in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1x42A)M1 T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQ 1x42A 2 :IRAVFFDFVGTLLSVEGEAKTHLKIMEEVLGD T0371 55 :ASRSPEQLADSYHKL 1x42A 34 :YPLNPKTLLDEYEKL T0371 84 :MITKEYIDLKV 1x42A 51 :EAFSNYAGKPY T0371 97 :GIVAYLGTANSANYLVSDGIKMLP 1x42A 62 :RPIRDIEEEVMRKLAEKYGFKYPE T0371 130 :GEVNALVLLDDEGFNWFHDLNKTVNLLRKR 1x42A 86 :NFWEIHLRMHQRYGELYPEVVEVLKSLKGK T0371 161 :IPAIVANTDNTYPLTKTDVAIAIGGVATMI 1x42A 116 :YHVGMITDSDTEYLMAHLDALGIKDLFDSI T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1x42A 146 :TTSEEAGFFKPHPRIFELALKKA T0371 221 :EISKREILMVGDTLHTDILGGNKFGLDTALVLT 1x42A 169 :GVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDR T0371 255 :NTRIDDAETK 1x42A 202 :KGEKREFWDK T0371 272 :PTHICES 1x42A 212 :CDFIVSD T0371 280 :VIEL 1x42A 219 :LREV Number of specific fragments extracted= 11 number of extra gaps= 0 total=1220 Number of alignments=86 # 1x42A read from 1x42A/merged-good-all-a2m # found chain 1x42A in template set T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENTFDYLKA 1x42A 2 :IRAVFFDFVGTLLSVEGEAKTHLKIMEEVLG T0371 45 :GQD 1x42A 33 :DYP T0371 57 :RSPEQLADSYHK 1x42A 36 :LNPKTLLDEYEK T0371 85 :ITKEYIDLKVDGGI 1x42A 48 :LTREAFSNYAGKPY T0371 104 :TANSANYLVSDGIKMLP 1x42A 69 :EEVMRKLAEKYGFKYPE T0371 130 :GEVNALVLLDDEGFNWFHDLNKTVNLLRK 1x42A 86 :NFWEIHLRMHQRYGELYPEVVEVLKSLKG T0371 160 :TIPAIVANTD 1x42A 115 :KYHVGMITDS T0371 182 :AIGGVATMIESIL 1x42A 125 :DTEYLMAHLDALG T0371 201 :FGKPDSQMFMFAYDML 1x42A 153 :FFKPHPRIFELALKKA T0371 221 :EISKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDDAE 1x42A 169 :GVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWD T0371 267 :STGIVPTHICESAVI 1x42A 211 :KCDFIVSDLREVIKI Number of specific fragments extracted= 11 number of extra gaps= 0 total=1231 Number of alignments=87 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b0cA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2b0cA expands to /projects/compbio/data/pdb/2b0c.pdb.gz 2b0cA:# T0371 read from 2b0cA/merged-good-all-a2m # 2b0cA read from 2b0cA/merged-good-all-a2m # adding 2b0cA to template set # found chain 2b0cA in template set T0371 15 :CIFFDAFGVLKTYN 2b0cA 9 :LYIFDLGNVIVDID T0371 59 :PEQLADSYHKL 2b0cA 23 :FNRVLGAWSDL T0371 73 :SITADKIISS 2b0cA 35 :RIPLASLKKS T0371 83 :GMITKEYIDLKV 2b0cA 48 :GEAFHQHERGEI T0371 103 :GTANSANYLVSD 2b0cA 60 :SDEAFAEALCHE T0371 115 :GI 2b0cA 73 :AL T0371 122 :SAIDDSNIGEVNALV 2b0cA 75 :PLSYEQFSHGWQAVF T0371 143 :FNWFHDLNKTVNLLRKRTIPA 2b0cA 90 :VALRPEVIAIMHKLREQGHRV T0371 164 :IVANTDNTYPLTKTDVAIA 2b0cA 112 :VLSNTNRLHTTFWPEEYPE T0371 186 :VATMIESILGRRFIRFGKPDSQMFMFAYDML 2b0cA 131 :IRDAADHIYLSQDLGMRKPEARIYQHVLQAE T0371 221 :EISKREILMVGDT 2b0cA 162 :GFSPSDTVFFDDN T0371 235 :HTDILGGNKFGLDTA 2b0cA 175 :ADNIEGANQLGITSI T0371 254 :GNTRIDDAETKIKS 2b0cA 190 :LVKDKTTIPDYFAK Number of specific fragments extracted= 13 number of extra gaps= 0 total=1244 Number of alignments=88 # 2b0cA read from 2b0cA/merged-good-all-a2m # found chain 2b0cA in template set Warning: unaligning (T0371)T268 because last residue in template chain is (2b0cA)V204 T0371 13 :YKCIFFDAFGVLKTYN 2b0cA 7 :KMLYIFDLGNVIVDID T0371 34 :IENTFDYLKAQ 2b0cA 23 :FNRVLGAWSDL T0371 55 :ASRSPEQLADSY 2b0cA 34 :TRIPLASLKKSF T0371 73 :SITADK 2b0cA 46 :HMGEAF T0371 87 :KEYIDL 2b0cA 52 :HQHERG T0371 101 :YLGTANSANYLVSD 2b0cA 58 :EISDEAFAEALCHE T0371 115 :GIKMLP 2b0cA 73 :ALPLSY T0371 130 :GEVNALVLLD 2b0cA 79 :EQFSHGWQAV T0371 142 :GFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIA 2b0cA 89 :FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYP T0371 185 :GVATMIESILGRRFIRFGKPDSQMFMFAYDML 2b0cA 130 :EIRDAADHIYLSQDLGMRKPEARIYQHVLQAE T0371 221 :EISKREILMVGDTLH 2b0cA 162 :GFSPSDTVFFDDNAD T0371 237 :DILGGNKFGLDTALV 2b0cA 177 :NIEGANQLGITSILV T0371 256 :TRIDDAETKIKS 2b0cA 192 :KDKTTIPDYFAK Number of specific fragments extracted= 13 number of extra gaps= 0 total=1257 Number of alignments=89 # 2b0cA read from 2b0cA/merged-good-all-a2m # found chain 2b0cA in template set T0371 15 :CIFFDAFGVLKTYN 2b0cA 9 :LYIFDLGNVIVDID T0371 31 :LPGIENTFDYLK 2b0cA 23 :FNRVLGAWSDLT T0371 43 :AQGQ 2b0cA 55 :ERGE T0371 57 :RSPEQLADSYHKLGLFSITADKII 2b0cA 59 :ISDEAFAEALCHEMALPLSYEQFS T0371 88 :EYIDLK 2b0cA 83 :HGWQAV T0371 142 :GFNWFHDLNKTVNLLRKRTIPAIVANTD 2b0cA 89 :FVALRPEVIAIMHKLREQGHRVVVLSNT T0371 172 :YPLTKTDVAIAIGGVATMIESILGRRFIRFGKPDSQMFMFAYDML 2b0cA 117 :NRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAE T0371 221 :EISKREILMVGDTLH 2b0cA 162 :GFSPSDTVFFDDNAD T0371 237 :DILGGNKFGLDTALV 2b0cA 177 :NIEGANQLGITSILV Number of specific fragments extracted= 9 number of extra gaps= 0 total=1266 Number of alignments=90 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rkqA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0371 read from 1rkqA/merged-good-all-a2m # 1rkqA read from 1rkqA/merged-good-all-a2m # found chain 1rkqA in training set Warning: unaligning (T0371)Y110 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1rkqA)S101 Warning: unaligning (T0371)L111 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1rkqA)S101 T0371 12 :KYKCIFFDAFGVLKTYNGLL 1rkqA 3 :AIKLIAIDMDGTLLLPDHTI T0371 32 :PGIENTFDYLKAQGQDYYIVT 1rkqA 24 :PAVKNAIAAARARGVNVVLTT T0371 56 :SRSPEQLADSYHKLGL 1rkqA 45 :GRPYAGVHNYLKELHM T0371 73 :SITADKIISSGMITKEYI 1rkqA 61 :EQPGDYCITYNGALVQKA T0371 91 :DLKVDGGIVAYLGTANSAN 1rkqA 81 :GSTVAQTALSYDDYRFLEK T0371 112 :VSDGIKMLPVSAID 1rkqA 102 :REVGSHFHALDRTT T0371 135 :LVLLDDE 1rkqA 116 :LYTANRD T0371 145 :WFHDLNKTVNL 1rkqA 123 :ISYYTVHESFV T0371 159 :RTIPA 1rkqA 134 :ATIPL T0371 168 :TDNTYPLTKTDVAI 1rkqA 140 :FCEAEKMDPNTQFL T0371 182 :AIGGVATMIESI 1rkqA 160 :EPAILDQAIARI T0371 201 :FGK 1rkqA 196 :VNK T0371 206 :SQMFMFAYDML 1rkqA 199 :GTGVKSLADVL T0371 221 :EISKREILMVGDT 1rkqA 210 :GIKPEEIMAIGDQ T0371 235 :HTDILGGNKFGLDTA 1rkqA 223 :ENDIAMIEYAGVGVA T0371 254 :GNTRIDDAETK 1rkqA 238 :VDNAIPSVKEV T0371 272 :PTHICESAVIE 1rkqA 249 :ANFVTKSNLED Number of specific fragments extracted= 17 number of extra gaps= 1 total=1283 Number of alignments=91 # 1rkqA read from 1rkqA/merged-good-all-a2m # found chain 1rkqA in training set Warning: unaligning (T0371)Y110 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1rkqA)S101 Warning: unaligning (T0371)L111 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1rkqA)S101 T0371 12 :KYKCIFFDAFGVLKTYNGLL 1rkqA 3 :AIKLIAIDMDGTLLLPDHTI T0371 32 :PGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSY 1rkqA 24 :PAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKEL T0371 73 :SITADK 1rkqA 59 :HMEQPG T0371 79 :IISSGMITKEYI 1rkqA 68 :ITYNGALVQKAA T0371 91 :DLKVDGGIVAYLGTANSAN 1rkqA 81 :GSTVAQTALSYDDYRFLEK T0371 112 :VSDGIKMLPVSAI 1rkqA 102 :REVGSHFHALDRT T0371 170 :N 1rkqA 115 :T T0371 171 :TYPLTKTDVAIA 1rkqA 161 :PAILDQAIARIP T0371 184 :GGVATMIESILGRRF 1rkqA 173 :QEVKEKYTVLKSAPY T0371 199 :IRFGKPDSQMFMFAYDML 1rkqA 192 :LDKRVNKGTGVKSLADVL T0371 221 :EISKREILMVGDT 1rkqA 210 :GIKPEEIMAIGDQ T0371 235 :HTDILGGNKFGL 1rkqA 223 :ENDIAMIEYAGV T0371 248 :TALVLT 1rkqA 235 :GVAVDN T0371 257 :RIDDAETK 1rkqA 241 :AIPSVKEV T0371 272 :PTHICESAVI 1rkqA 249 :ANFVTKSNLE Number of specific fragments extracted= 15 number of extra gaps= 1 total=1298 Number of alignments=92 # 1rkqA read from 1rkqA/merged-good-all-a2m # found chain 1rkqA in training set Warning: unaligning (T0371)L155 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1rkqA)S101 Warning: unaligning (T0371)L156 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1rkqA)S101 T0371 12 :KYKCIFFDAFGVLKTYNG 1rkqA 3 :AIKLIAIDMDGTLLLPDH T0371 30 :LLPGIENTFDYLKAQGQDYYIVTNDASR 1rkqA 22 :ISPAVKNAIAAARARGVNVVLTTGRPYA T0371 61 :QLADSYHKLGL 1rkqA 50 :GVHNYLKELHM T0371 93 :KVDGGIVAY 1rkqA 61 :EQPGDYCIT T0371 132 :VNALVLLDDEGFNW 1rkqA 70 :YNGALVQKAADGST T0371 146 :FHDLNKTVN 1rkqA 91 :YDDYRFLEK T0371 157 :RKRTIPAIVANTDNTYPLTKT 1rkqA 102 :REVGSHFHALDRTTLYTANRD T0371 182 :AIGGVATMIESIL 1rkqA 123 :ISYYTVHESFVAT T0371 205 :DSQMFMFAYDML 1rkqA 160 :EPAILDQAIARI T0371 217 :RQK 1rkqA 176 :KEK T0371 220 :MEISKREILMVGDTLH 1rkqA 209 :LGIKPEEIMAIGDQEN T0371 237 :DILGGNKFGLDTA 1rkqA 225 :DIAMIEYAGVGVA T0371 253 :TGNTRID 1rkqA 238 :VDNAIPS T0371 261 :AET 1rkqA 245 :VKE T0371 267 :STGIVPTHI 1rkqA 248 :VANFVTKSN Number of specific fragments extracted= 15 number of extra gaps= 1 total=1313 Number of alignments=93 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1swvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1swvA expands to /projects/compbio/data/pdb/1swv.pdb.gz 1swvA:# T0371 read from 1swvA/merged-good-all-a2m # 1swvA read from 1swvA/merged-good-all-a2m # adding 1swvA to template set # found chain 1swvA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1swvA)K5 T0371 13 :YKCIFFDAFGVLKTYNGLL 1swvA 6 :IEAVIFAWAGTTVDYGCFA T0371 58 :SPEQLADSYHKLGL 1swvA 25 :PLEVFMEIFHKRGV T0371 73 :SITADKIISSGMITKEYI 1swvA 39 :AITAEEARKPMGLLKIDH T0371 91 :DLK 1swvA 58 :RAL T0371 102 :LGTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1swvA 61 :TEMPRIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINGVKEVIASLRERGIKIGSTTG T0371 174 :LTKTDVAI 1swvA 128 :YTREMMDI T0371 186 :VATMIES 1swvA 136 :VAKEAAL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1swvA 151 :VTPDDVPAGRPYPWMCYKNAMEL T0371 221 :EI 1swvA 174 :GV T0371 223 :SKREILMVGDT 1swvA 177 :PMNHMIKVGDT T0371 235 :HTDILGGNKFGLDTALVLTGNTR 1swvA 188 :VSDMKEGRNAGMWTVGVILGSSE T0371 258 :IDDAETKIKSTG 1swvA 230 :IEVVRNRFVENG T0371 272 :PTHICES 1swvA 242 :AHFTIET T0371 280 :VIEL 1swvA 249 :MQEL Number of specific fragments extracted= 14 number of extra gaps= 0 total=1327 Number of alignments=94 # 1swvA read from 1swvA/merged-good-all-a2m # found chain 1swvA in template set Warning: unaligning (T0371)P11 because first residue in template chain is (1swvA)K5 T0371 13 :YKCIFFDAFGVLKTYN 1swvA 6 :IEAVIFAWAGTTVDYG T0371 55 :ASRSPEQLADSYHKLGL 1swvA 22 :CFAPLEVFMEIFHKRGV T0371 73 :SITADKIISSGMITKEYIDLK 1swvA 39 :AITAEEARKPMGLLKIDHVRA T0371 101 :YLGTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAIGGVA 1swvA 60 :LTEMPRIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQGYK T0371 188 :TMI 1swvA 148 :DFL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1swvA 151 :VTPDDVPAGRPYPWMCYKNAMEL T0371 221 :EI 1swvA 174 :GV T0371 223 :SKREILMVGDTLH 1swvA 177 :PMNHMIKVGDTVS T0371 237 :DILGGNKFGLDTALVLTGNTR 1swvA 190 :DMKEGRNAGMWTVGVILGSSE T0371 258 :IDDAETKIKSTG 1swvA 230 :IEVVRNRFVENG T0371 272 :PTHICES 1swvA 242 :AHFTIET T0371 280 :VIEL 1swvA 249 :MQEL Number of specific fragments extracted= 12 number of extra gaps= 0 total=1339 Number of alignments=95 # 1swvA read from 1swvA/merged-good-all-a2m # found chain 1swvA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1swvA)K5 T0371 13 :YKCIFFDAFGVLKTYNGLL 1swvA 6 :IEAVIFAWAGTTVDYGCFA T0371 58 :SPEQLADSYHKLGL 1swvA 25 :PLEVFMEIFHKRGV T0371 73 :SITADK 1swvA 39 :AITAEE T0371 79 :IISSGMITKEYIDLK 1swvA 49 :MGLLKIDHVRALTEM T0371 105 :ANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1swvA 64 :PRIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINGVKEVIASLRERGIKIGSTTG T0371 181 :IAIG 1swvA 128 :YTRE T0371 186 :VATMIESIL 1swvA 132 :MMDIVAKEA T0371 195 :GRRFIRFGKPDSQMFMFAYDML 1swvA 152 :TPDDVPAGRPYPWMCYKNAMEL T0371 221 :EI 1swvA 174 :GV T0371 223 :SKREILMVGDTLH 1swvA 177 :PMNHMIKVGDTVS T0371 237 :DILGGNKFGLDTALVLTG 1swvA 190 :DMKEGRNAGMWTVGVILG T0371 255 :NTRIDDAE 1swvA 212 :GLTEEEVE T0371 263 :T 1swvA 239 :E T0371 266 :KSTGIVPTHICESA 1swvA 240 :NGAHFTIETMQELE Number of specific fragments extracted= 14 number of extra gaps= 0 total=1353 Number of alignments=96 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1jud/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1jud expands to /projects/compbio/data/pdb/1jud.pdb.gz 1jud:Warning: there is no chain 1jud will retry with 1judA # T0371 read from 1jud/merged-good-all-a2m # 1jud read from 1jud/merged-good-all-a2m # adding 1jud to template set # found chain 1jud in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1jud)Y3 T0371 13 :YKCIFFDAFGVLKTYNGLL 1jud 4 :IKGIAFDLYGTLFDVHSVV T0371 39 :DYLKAQ 1jud 23 :GRCDEA T0371 56 :SR 1jud 31 :GR T0371 59 :PEQLADSYHKL 1jud 33 :GREISALWRQK T0371 79 :I 1jud 44 :Q T0371 83 :GMITKEYI 1jud 45 :LEYTWLRS T0371 91 :DLKV 1jud 54 :MNRY T0371 97 :GIVAYLGTANSANYLVSDGI 1jud 58 :VNFQQATEDALRFTCRHLGL T0371 122 :SAID 1jud 78 :DLDA T0371 130 :GEVNALVLLDDE 1jud 82 :RTRSTLCDAYLR T0371 143 :FNWFHDLNKTVNLLRKRTIPA 1jud 94 :LAPFSEVPDSLRELKRRGLKL T0371 164 :IVANTDNTY 1jud 116 :ILSNGSPQS T0371 174 :LTKTDVAIA 1jud 125 :IDAVVSHAG T0371 186 :VATMIESILGRRFIRFGKPDSQMFMFAYDML 1jud 134 :LRDGFDHLLSVDPVQVYKPDNRVYELAEQAL T0371 221 :EISKREILMVGDT 1jud 165 :GLDRSAILFVSSN T0371 235 :HTDILGGNKFGLDTALVLTGNTR 1jud 178 :AWDATGARYFGFPTCWINRTGNV T0371 265 :IKSTGIVPTHICES 1jud 201 :FEEMGQTPDWEVTS T0371 280 :VIE 1jud 215 :LRA Number of specific fragments extracted= 18 number of extra gaps= 0 total=1371 Number of alignments=97 # 1jud read from 1jud/merged-good-all-a2m # found chain 1jud in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1jud)Y3 T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENT 1jud 4 :IKGIAFDLYGTLFDVHSVVGRCDEA T0371 55 :ASRSPEQLADSYHKLG 1jud 29 :FPGRGREISALWRQKQ T0371 83 :GMITKEYI 1jud 45 :LEYTWLRS T0371 94 :VDG 1jud 53 :LMN T0371 97 :GIVAYLGTANSANYLVSDGIKML 1jud 58 :VNFQQATEDALRFTCRHLGLDLD T0371 130 :GEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAIGGVATMI 1jud 81 :ARTRSTLCDAYLRLAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1jud 142 :LSVDPVQVYKPDNRVYELAEQAL T0371 221 :EISKREILMVGDTLH 1jud 165 :GLDRSAILFVSSNAW T0371 237 :DILGGNKFGLDTALVLTGNTR 1jud 180 :DATGARYFGFPTCWINRTGNV T0371 265 :IKSTGIVPTHICES 1jud 201 :FEEMGQTPDWEVTS T0371 280 :VIEL 1jud 215 :LRAV Number of specific fragments extracted= 11 number of extra gaps= 0 total=1382 Number of alignments=98 # 1jud read from 1jud/merged-good-all-a2m # found chain 1jud in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1jud)Y3 Warning: unaligning (T0371)E282 because last residue in template chain is (1jud)F222 T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENT 1jud 4 :IKGIAFDLYGTLFDVHSVVGRCDEA T0371 56 :SRSPEQLADSYHKLGL 1jud 30 :PGRGREISALWRQKQL T0371 84 :MITKEYIDLK 1jud 46 :EYTWLRSLMN T0371 103 :GTANSANYLVSDGIKM 1jud 64 :TEDALRFTCRHLGLDL T0371 129 :IGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTD 1jud 80 :DARTRSTLCDAYLRLAPFSEVPDSLRELKRRGLKLAILSNG T0371 182 :AIGGVATMIESIL 1jud 121 :SPQSIDAVVSHAG T0371 195 :GRRFIRFGKPDSQMFMFAYDML 1jud 143 :SVDPVQVYKPDNRVYELAEQAL T0371 221 :EISKREILMVGDTLH 1jud 165 :GLDRSAILFVSSNAW T0371 237 :DILGGNKFGLDTALVLTGNTRI 1jud 180 :DATGARYFGFPTCWINRTGNVF T0371 262 :ETKIKSTGIVPTHICESAVI 1jud 202 :EEMGQTPDWEVTSLRAVVEL Number of specific fragments extracted= 10 number of extra gaps= 0 total=1392 Number of alignments=99 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vjrA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vjrA expands to /projects/compbio/data/pdb/1vjr.pdb.gz 1vjrA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 172, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 173, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 177, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 178, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 180, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 181, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 183, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 184, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 186, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 187, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 237, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 241, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 243, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 245, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 247, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 249, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 271, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 275, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 277, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 279, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 281, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 283, because occupancy 0.500 <= existing 0.500 in 1vjrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1601, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1605, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1607, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1609, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1611, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1613, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1616, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1620, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1622, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1624, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1626, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1628, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1630, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1632, because occupancy 0.500 <= existing 0.500 in 1vjrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1868, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1872, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1874, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1876, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1878, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1880, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1912, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1914, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1916, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1918, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1920, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1922, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1930, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1934, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1936, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1938, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1940, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1942, because occupancy 0.500 <= existing 0.500 in 1vjrA # T0371 read from 1vjrA/merged-good-all-a2m # 1vjrA read from 1vjrA/merged-good-all-a2m # adding 1vjrA to template set # found chain 1vjrA in template set Warning: unaligning (T0371)S8 because of BadResidue code BAD_PEPTIDE at template residue (1vjrA)H0 T0371 9 :LLPKYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGL 1vjrA 1 :VLDKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGV T0371 73 :SITADKIISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDGIKML 1vjrA 64 :DVPDDAVVTSGEITAEHMLKRFGRCRIFLLGTPQLKKVFEAYGHVID T0371 129 :IGEVNALVLLDDEGFN 1vjrA 111 :EENPDFVVLGFDKTLT T0371 146 :FHDLNKTVNLLR 1vjrA 127 :YERLKKACILLR T0371 159 :RTIPAIVANTDNTYP 1vjrA 139 :KGKFYIATHPDINCP T0371 175 :TKTDVAIAIGGVATMIESILGRRF 1vjrA 154 :SKEGPVPDAGSIMAAIEASTGRKP T0371 199 :IRFGKPDSQMFMFAYDML 1vjrA 179 :LIAGKPNPLVVDVISEKF T0371 221 :EISKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDD 1vjrA 197 :GVPKERMAMVGDRLYTDVKLGKNAGIVSILVLTGETTPED T0371 265 :IKSTGIVPTHICES 1vjrA 237 :LERAETKPDFVFKN T0371 280 :VIEL 1vjrA 251 :LGEL Number of specific fragments extracted= 10 number of extra gaps= 1 total=1402 Number of alignments=100 # 1vjrA read from 1vjrA/merged-good-all-a2m # found chain 1vjrA in template set T0371 9 :LLPKYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGL 1vjrA 1 :VLDKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGV T0371 73 :SITADKIISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDGIKMLP 1vjrA 64 :DVPDDAVVTSGEITAEHMLKRFGRCRIFLLGTPQLKKVFEAYGHVIDE T0371 130 :GEVNALVLLDDEGFN 1vjrA 112 :ENPDFVVLGFDKTLT T0371 146 :FHDLNKTVNLL 1vjrA 127 :YERLKKACILL T0371 158 :KRTIPAIVANTDNTYP 1vjrA 138 :RKGKFYIATHPDINCP T0371 175 :TKTDVAIAIGGVATMIESILGRRF 1vjrA 154 :SKEGPVPDAGSIMAAIEASTGRKP T0371 199 :IRFGKPDSQMFMFAYDML 1vjrA 179 :LIAGKPNPLVVDVISEKF T0371 221 :EISKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDDAETK 1vjrA 197 :GVPKERMAMVGDRLYTDVKLGKNAGIVSILVLTGETTPEDLERA T0371 269 :GIVPTHICES 1vjrA 241 :ETKPDFVFKN T0371 280 :VIEL 1vjrA 251 :LGEL Number of specific fragments extracted= 10 number of extra gaps= 0 total=1412 Number of alignments=101 # 1vjrA read from 1vjrA/merged-good-all-a2m # found chain 1vjrA in template set T0371 10 :LPKYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGL 1vjrA 2 :LDKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGV T0371 73 :SITADKIISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDGIKMLP 1vjrA 64 :DVPDDAVVTSGEITAEHMLKRFGRCRIFLLGTPQLKKVFEAYGHVIDE T0371 130 :GEVNALVLLDDEGFN 1vjrA 112 :ENPDFVVLGFDKTLT T0371 147 :HDLNKTVNLLRKRTIPAIVANTDNTYPLTKT 1vjrA 127 :YERLKKACILLRKGKFYIATHPDINCPSKEG T0371 179 :VAIAIGGVATMIESILGRRF 1vjrA 158 :PVPDAGSIMAAIEASTGRKP T0371 199 :IRFGKPDSQMFMFAYDML 1vjrA 179 :LIAGKPNPLVVDVISEKF T0371 221 :EISKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDDAETKIKSTGIVPTHICESAVI 1vjrA 197 :GVPKERMAMVGDRLYTDVKLGKNAGIVSILVLTGETTPEDLERAETKPDFVFKNLGELAKA Number of specific fragments extracted= 7 number of extra gaps= 0 total=1419 Number of alignments=102 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zrn/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zrn expands to /projects/compbio/data/pdb/1zrn.pdb.gz 1zrn:Warning: there is no chain 1zrn will retry with 1zrnA # T0371 read from 1zrn/merged-good-all-a2m # 1zrn read from 1zrn/merged-good-all-a2m # adding 1zrn to template set # found chain 1zrn in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1zrn)Y3 T0371 13 :YKCIFFDAFGVLKTYN 1zrn 4 :IKGIAFDLYGTLFDVH T0371 29 :GLL 1zrn 27 :EAF T0371 32 :PGIENTFDYLKAQ 1zrn 31 :GRGREISALWRQK T0371 59 :PEQLADSYHK 1zrn 45 :LEYTWLRSLM T0371 70 :GL 1zrn 55 :NR T0371 73 :SITADKI 1zrn 57 :YVNFQQA T0371 104 :TANSANYLV 1zrn 64 :TEDALRFTC T0371 113 :SDGI 1zrn 74 :HLGL T0371 122 :SAIDDSNIGEVNAL 1zrn 78 :DLDARTRSTLCDAY T0371 140 :D 1zrn 92 :L T0371 142 :GFNWFHDLNKTVNLLRKRTIPA 1zrn 93 :RLAPFSEVPDSLRELKRRGLKL T0371 164 :IVANTDNTY 1zrn 116 :ILSNGSPQS T0371 174 :LTKTDVAIA 1zrn 125 :IDAVVSHAG T0371 186 :VATMIESILGRRFIRFGKPDSQMFMFAYDML 1zrn 134 :LRDGFDHLLSVDPVQVYKPDNRVYELAEQAL T0371 221 :EISKREILMVGDT 1zrn 165 :GLDRSAILFVASN T0371 235 :HTDILGGNKFGLDTALVL 1zrn 178 :AWDATGARYFGFPTCWIN T0371 254 :GNTRI 1zrn 196 :RTGNV T0371 265 :IKSTGIVPTHICES 1zrn 201 :FEEMGQTPDWEVTS T0371 280 :VIE 1zrn 215 :LRA Number of specific fragments extracted= 19 number of extra gaps= 0 total=1438 Number of alignments=103 # 1zrn read from 1zrn/merged-good-all-a2m # found chain 1zrn in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1zrn)Y3 T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENTF 1zrn 4 :IKGIAFDLYGTLFDVHSVVGRCDEAF T0371 56 :SRSPEQLADSYHKLG 1zrn 30 :PGRGREISALWRQKQ T0371 83 :GMITKEYI 1zrn 45 :LEYTWLRS T0371 91 :DL 1zrn 54 :MN T0371 96 :G 1zrn 56 :R T0371 97 :GIVAYLGTANSANYLVSDGIKML 1zrn 58 :VNFQQATEDALRFTCRHLGLDLD T0371 130 :GEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAIGGVATMI 1zrn 81 :ARTRSTLCDAYLRLAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1zrn 142 :LSVDPVQVYKPDNRVYELAEQAL T0371 221 :EISKREILMVGDTLH 1zrn 165 :GLDRSAILFVASNAW T0371 237 :DILGGNKFGLDTALVLTGNTR 1zrn 180 :DATGARYFGFPTCWINRTGNV T0371 265 :IKSTGIVPTHICES 1zrn 201 :FEEMGQTPDWEVTS T0371 280 :VIEL 1zrn 215 :LRAV Number of specific fragments extracted= 12 number of extra gaps= 0 total=1450 Number of alignments=104 # 1zrn read from 1zrn/merged-good-all-a2m # found chain 1zrn in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1zrn)Y3 Warning: unaligning (T0371)E282 because last residue in template chain is (1zrn)F222 T0371 13 :YKCIFFDAFGVLKTYNGLLPGIE 1zrn 4 :IKGIAFDLYGTLFDVHSVVGRCD T0371 36 :NTFDYLKA 1zrn 35 :EISALWRQ T0371 57 :RSPEQLADSYHKLGLF 1zrn 43 :KQLEYTWLRSLMNRYV T0371 81 :SSGMIT 1zrn 59 :NFQQAT T0371 104 :TANSANYLVSDGIKM 1zrn 65 :EDALRFTCRHLGLDL T0371 129 :IGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTD 1zrn 80 :DARTRSTLCDAYLRLAPFSEVPDSLRELKRRGLKLAILSNG T0371 182 :AIGGVATMIESIL 1zrn 121 :SPQSIDAVVSHAG T0371 195 :GRRFIRFGKPDSQMFMFAYDML 1zrn 143 :SVDPVQVYKPDNRVYELAEQAL T0371 221 :EISKREILMVGDTLH 1zrn 165 :GLDRSAILFVASNAW T0371 237 :DILGGNKFGLDTALVLTGNTRI 1zrn 180 :DATGARYFGFPTCWINRTGNVF T0371 262 :ETKIKSTGIVPTHICESAVI 1zrn 202 :EEMGQTPDWEVTSLRAVVEL Number of specific fragments extracted= 11 number of extra gaps= 0 total=1461 Number of alignments=105 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pw5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0371/1pw5A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0371/1pw5A/merged-good-all-a2m.gz for input Trying 1pw5A/merged-good-all-a2m Error: Couldn't open file 1pw5A/merged-good-all-a2m or 1pw5A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1u7pA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1u7pA expands to /projects/compbio/data/pdb/1u7p.pdb.gz 1u7pA:# T0371 read from 1u7pA/merged-good-all-a2m # 1u7pA read from 1u7pA/merged-good-all-a2m # adding 1u7pA to template set # found chain 1u7pA in template set T0371 13 :YKCIFFDAFGVLKTYNGLL 1u7pA 5 :PKLAVFDLDYTLWPFWVDT T0371 70 :GL 1u7pA 24 :HV T0371 73 :SIT 1u7pA 26 :DPP T0371 79 :I 1u7pA 29 :F T0371 97 :GI 1u7pA 30 :HK T0371 122 :SAID 1u7pA 32 :SSDG T0371 134 :ALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYP 1u7pA 36 :TVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQ T0371 174 :LTKTDVAIA 1u7pA 77 :ANQLLELFD T0371 186 :VATMI 1u7pA 86 :LGKYF T0371 194 :LGRRFIRFGK 1u7pA 91 :IQREIYPGSK T0371 206 :SQMFMFAYDML 1u7pA 101 :VTHFERLHHKT T0371 221 :EISKREILMVGDT 1u7pA 112 :GVPFSQMVFFDDE T0371 235 :HTDILGGNKFGLDTALVL 1u7pA 125 :NRNIIDVGRLGVTCIHIR T0371 254 :GNTRIDDAETKIK 1u7pA 143 :DGMSLQTLTQGLE Number of specific fragments extracted= 14 number of extra gaps= 0 total=1475 Number of alignments=106 # 1u7pA read from 1u7pA/merged-good-all-a2m # found chain 1u7pA in template set T0371 12 :KYKCIFFDAFGVLKTYNGLL 1u7pA 4 :LPKLAVFDLDYTLWPFWVDT T0371 73 :SITAD 1u7pA 24 :HVDPP T0371 118 :MLPVSAI 1u7pA 29 :FHKSSDG T0371 134 :ALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1u7pA 36 :TVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASR T0371 169 :DNTYPLTKTDVAIAIGGVATMI 1u7pA 72 :SEIQGANQLLELFDLGKYFIQR T0371 198 :FIRFGK 1u7pA 94 :EIYPGS T0371 209 :FMFAYDMLRQKMEISKREILMVGDT 1u7pA 100 :KVTHFERLHHKTGVPFSQMVFFDDE T0371 235 :HTDILGGNKFGL 1u7pA 125 :NRNIIDVGRLGV T0371 248 :TALVLTGNTRIDDAETKI 1u7pA 137 :TCIHIRDGMSLQTLTQGL Number of specific fragments extracted= 9 number of extra gaps= 0 total=1484 Number of alignments=107 # 1u7pA read from 1u7pA/merged-good-all-a2m # found chain 1u7pA in template set T0371 13 :YKCIFFDAFGVLKTYNG 1u7pA 5 :PKLAVFDLDYTLWPFWV T0371 73 :SIT 1u7pA 24 :HVD T0371 114 :DGIKMLP 1u7pA 27 :PPFHKSS T0371 132 :VNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1u7pA 34 :DGTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASR T0371 173 :PL 1u7pA 71 :TS T0371 182 :AIGGVATMIESIL 1u7pA 73 :EIQGANQLLELFD T0371 195 :GRRFIRFGKPDSQMFMFAYDML 1u7pA 90 :FIQREIYPGSKVTHFERLHHKT T0371 221 :EISKREILMVGDTLH 1u7pA 112 :GVPFSQMVFFDDENR T0371 237 :DILGGNKFGLDTALV 1u7pA 127 :NIIDVGRLGVTCIHI T0371 253 :TGNTRIDDA 1u7pA 142 :RDGMSLQTL Number of specific fragments extracted= 10 number of extra gaps= 0 total=1494 Number of alignments=108 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1te2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0371 read from 1te2A/merged-good-all-a2m # 1te2A read from 1te2A/merged-good-all-a2m # found chain 1te2A in training set Warning: unaligning (T0371)L10 because first residue in template chain is (1te2A)R5 Warning: unaligning (T0371)A180 because of BadResidue code BAD_PEPTIDE in next template residue (1te2A)F129 Warning: unaligning (T0371)I181 because of BadResidue code BAD_PEPTIDE at template residue (1te2A)F129 T0371 12 :KYKCIFFDAFGVLKTYNGLL 1te2A 6 :QILAAIFDMDGLLIDSEPLW T0371 59 :PEQLADSYHKLGL 1te2A 26 :DRAELDVMASLGV T0371 73 :SIT 1te2A 39 :DIS T0371 76 :ADKI 1te2A 43 :RNEL T0371 97 :GIVAYLGTANSANYLVSDG 1te2A 47 :PDTLGLRIDMVVDLWYARQ T0371 118 :MLPVSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPA 1te2A 66 :PWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVALCKEQGLLV T0371 164 :IVANTDNTY 1te2A 113 :LASASPLHM T0371 174 :LTKTDV 1te2A 122 :LEKVLT T0371 182 :A 1te2A 130 :D T0371 186 :VATMIESILGRRFIRFGKPDSQMFMFAYDML 1te2A 131 :LRDSFDALASAEKLPYSKPHPQVYLDCAAKL T0371 221 :EISKREILMVGDT 1te2A 162 :GVDPLTCVALEDS T0371 235 :HTDILGGNKFGLDTALVLTGNT 1te2A 175 :VNGMIASKAARMRSIVVPAPEA T0371 257 :RIDD 1te2A 198 :NDPR T0371 265 :IKS 1te2A 202 :FVL T0371 272 :PTHICES 1te2A 205 :ANVKLSS T0371 280 :VIEL 1te2A 212 :LTEL Number of specific fragments extracted= 16 number of extra gaps= 1 total=1510 Number of alignments=109 # 1te2A read from 1te2A/merged-good-all-a2m # found chain 1te2A in training set Warning: unaligning (T0371)P11 because first residue in template chain is (1te2A)R5 Warning: unaligning (T0371)A180 because of BadResidue code BAD_PEPTIDE in next template residue (1te2A)F129 Warning: unaligning (T0371)I181 because of BadResidue code BAD_PEPTIDE at template residue (1te2A)F129 T0371 12 :KYKCIFFDAFGVLKTYN 1te2A 6 :QILAAIFDMDGLLIDSE T0371 32 :PGIENTF 1te2A 23 :PLWDRAE T0371 39 :DYLKAQG 1te2A 31 :DVMASLG T0371 55 :ASRSPEQLADSYHKLG 1te2A 50 :LGLRIDMVVDLWYARQ T0371 71 :LFSITADKIISS 1te2A 67 :WNGPSRQEVVER T0371 103 :GTANSANYLVSD 1te2A 79 :VIARAISLVEET T0371 143 :FNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDV 1te2A 91 :RPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLT T0371 182 :AIGGVATMI 1te2A 130 :DLRDSFDAL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1te2A 139 :ASAEKLPYSKPHPQVYLDCAAKL T0371 221 :EISKREILMVGDTLH 1te2A 162 :GVDPLTCVALEDSVN T0371 237 :DILGGNKFGLDTALVLTGNT 1te2A 177 :GMIASKAARMRSIVVPAPEA T0371 257 :RIDDAET 1te2A 198 :NDPRFVL T0371 272 :PTHICES 1te2A 205 :ANVKLSS T0371 280 :VIEL 1te2A 212 :LTEL Number of specific fragments extracted= 14 number of extra gaps= 1 total=1524 Number of alignments=110 # 1te2A read from 1te2A/merged-good-all-a2m # found chain 1te2A in training set Warning: unaligning (T0371)S192 because of BadResidue code BAD_PEPTIDE in next template residue (1te2A)F129 Warning: unaligning (T0371)I193 because of BadResidue code BAD_PEPTIDE at template residue (1te2A)F129 T0371 13 :YKCIFFDAFGVLKT 1te2A 7 :ILAAIFDMDGLLID T0371 30 :LLPGIENTF 1te2A 21 :SEPLWDRAE T0371 63 :ADSYHKLGL 1te2A 30 :LDVMASLGV T0371 73 :SITAD 1te2A 39 :DISRR T0371 78 :KIISSGMITKEYIDLKVDGGI 1te2A 50 :LGLRIDMVVDLWYARQPWNGP T0371 103 :GTANSANYLVSD 1te2A 71 :SRQEVVERVIAR T0371 135 :LVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTD 1te2A 83 :AISLVEETRPLLPGVREAVALCKEQGLLVGLASAS T0371 182 :AIGGVATMIE 1te2A 118 :PLHMLEKVLT T0371 194 :L 1te2A 130 :D T0371 195 :GRRFIRFGKPDSQMFMFAYDML 1te2A 140 :SAEKLPYSKPHPQVYLDCAAKL T0371 221 :EISKREILMVGDTLH 1te2A 162 :GVDPLTCVALEDSVN T0371 237 :DILGGNKFGLDTALVLT 1te2A 177 :GMIASKAARMRSIVVPA T0371 259 :DDAE 1te2A 194 :PEAQ T0371 263 :TKIKSTGIVPTHICES 1te2A 200 :PRFVLANVKLSSLTEL Number of specific fragments extracted= 14 number of extra gaps= 1 total=1538 Number of alignments=111 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fezA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1fezA expands to /projects/compbio/data/pdb/1fez.pdb.gz 1fezA:# T0371 read from 1fezA/merged-good-all-a2m # 1fezA read from 1fezA/merged-good-all-a2m # adding 1fezA to template set # found chain 1fezA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1fezA)K5 T0371 13 :YKCIFFDAFGVLKTYNGLL 1fezA 6 :IEAVIFDWAGTTVDYGCFA T0371 59 :PEQLADSYHKLGL 1fezA 26 :LEVFMEIFHKRGV T0371 73 :SITADKIISS 1fezA 39 :AITAEEARKP T0371 83 :GMITKEYID 1fezA 54 :IDHVRALTE T0371 104 :TANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1fezA 63 :MPRIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINAVKEVIASLRERGIKIGSTTG T0371 174 :LTKTD 1fezA 128 :YTREM T0371 186 :VATMIESIL 1fezA 133 :MDIVAKEAA T0371 195 :GRRFIRFGKPDSQMFMFAYDML 1fezA 152 :TPDDVPAGRPYPWMCYKNAMEL T0371 221 :EI 1fezA 174 :GV T0371 223 :SKREILMVGDT 1fezA 177 :PMNHMIKVGDT T0371 235 :HTDILGGNKFGLDTALVLTGNTR 1fezA 188 :VSDMKEGRNAGMWTVGVILGSSE T0371 258 :IDDAETKIKSTG 1fezA 230 :IEVVRNRFVENG T0371 272 :PTHICES 1fezA 242 :AHFTIET T0371 280 :VIEL 1fezA 249 :MQEL Number of specific fragments extracted= 14 number of extra gaps= 0 total=1552 Number of alignments=112 # 1fezA read from 1fezA/merged-good-all-a2m # found chain 1fezA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1fezA)K5 T0371 13 :YKCIFFDAFGVLKTYNGL 1fezA 6 :IEAVIFDWAGTTVDYGCF T0371 57 :RSPEQLADSYHKLGL 1fezA 24 :APLEVFMEIFHKRGV T0371 73 :SITADKIISSGMI 1fezA 39 :AITAEEARKPMGL T0371 93 :KVDGGIVAYLGTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAIGGVA 1fezA 52 :LKIDHVRALTEMPRIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINAVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQGYK T0371 188 :TMI 1fezA 148 :DFL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1fezA 151 :VTPDDVPAGRPYPWMCYKNAMEL T0371 221 :EI 1fezA 174 :GV T0371 223 :SKREILMVGDTLH 1fezA 177 :PMNHMIKVGDTVS T0371 237 :DILGGNKFGLDTALVLTGNTR 1fezA 190 :DMKEGRNAGMWTVGVILGSSE T0371 258 :IDDAETKIKSTG 1fezA 230 :IEVVRNRFVENG T0371 272 :PTHICES 1fezA 242 :AHFTIET T0371 280 :VIEL 1fezA 249 :MQEL Number of specific fragments extracted= 12 number of extra gaps= 0 total=1564 Number of alignments=113 # 1fezA read from 1fezA/merged-good-all-a2m # found chain 1fezA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1fezA)K5 T0371 13 :YKCIFFDAFGVLKTYNGLLP 1fezA 6 :IEAVIFDWAGTTVDYGCFAP T0371 59 :PEQLADSYHKLGL 1fezA 26 :LEVFMEIFHKRGV T0371 73 :SITADKI 1fezA 39 :AITAEEA T0371 80 :ISSGMITKEYID 1fezA 51 :LLKIDHVRALTE T0371 104 :TANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1fezA 63 :MPRIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINAVKEVIASLRERGIKIGSTTG T0371 181 :IAIGGVATMIESIL 1fezA 128 :YTREMMDIVAKEAA T0371 195 :GRRFIRFGKPDSQMFMFAYDML 1fezA 152 :TPDDVPAGRPYPWMCYKNAMEL T0371 221 :EI 1fezA 174 :GV T0371 223 :SKREILMVGDTLH 1fezA 177 :PMNHMIKVGDTVS T0371 237 :DILGGNKFGLDTALVLTGNT 1fezA 190 :DMKEGRNAGMWTVGVILGSS T0371 257 :RIDDAE 1fezA 214 :TEEEVE T0371 266 :KSTGIVPTHICESAV 1fezA 240 :NGAHFTIETMQELES Number of specific fragments extracted= 12 number of extra gaps= 0 total=1576 Number of alignments=114 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cr6B/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1cr6B expands to /projects/compbio/data/pdb/1cr6.pdb.gz 1cr6B:# T0371 read from 1cr6B/merged-good-all-a2m # 1cr6B read from 1cr6B/merged-good-all-a2m # adding 1cr6B to template set # found chain 1cr6B in template set Warning: unaligning (T0371)K14 because first residue in template chain is (1cr6B)R4 T0371 15 :CIFFDAFGVLKT 1cr6B 5 :VAAFDLDGVLAL T0371 29 :GLL 1cr6B 17 :PSI T0371 59 :PEQLADSYHKL 1cr6B 20 :AGAFRRSEEAL T0371 73 :SITADKIISSG 1cr6B 31 :ALPRDFLLGAY T0371 84 :MITKEYIDLK 1cr6B 48 :GPTEQLMKGK T0371 98 :IVAYLGTANSANYLVSD 1cr6B 58 :ITFSQWVPLMDESYRKS T0371 115 :GIKM 1cr6B 79 :GANL T0371 122 :SAIDDSNIGEVNALV 1cr6B 83 :PENFSISQIFSQAMA T0371 142 :GFNWFHDLNKTVNLLRKRTIPA 1cr6B 98 :ARSINRPMLQAAIALKKKGFTT T0371 164 :IVANTDNTY 1cr6B 121 :IVTNNWLDD T0371 175 :TKTDVA 1cr6B 130 :GDKRDS T0371 186 :VATMIESI 1cr6B 136 :LAQMMCEL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1cr6B 151 :IESCQVGMIKPEPQIYNFLLDTL T0371 221 :EISKREILMVGDT 1cr6B 174 :KAKPNEVVFLDDF T0371 235 :HTDILGGNKFGLDTALVL 1cr6B 187 :GSNLKPARDMGMVTILVH T0371 254 :GNTR 1cr6B 205 :NTAS T0371 258 :IDDAETK 1cr6B 211 :RELEKVT Number of specific fragments extracted= 17 number of extra gaps= 0 total=1593 Number of alignments=115 # 1cr6B read from 1cr6B/merged-good-all-a2m # found chain 1cr6B in template set Warning: unaligning (T0371)K14 because first residue in template chain is (1cr6B)R4 T0371 15 :CIFFDAFGVLKT 1cr6B 5 :VAAFDLDGVLAL T0371 27 :YNGLLPGIENTF 1cr6B 43 :TEFPEGPTEQLM T0371 54 :DASRSPEQLADSY 1cr6B 55 :KGKITFSQWVPLM T0371 104 :TANSANYLVSDGIKMLPV 1cr6B 68 :DESYRKSSKACGANLPEN T0371 130 :GEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANT 1cr6B 86 :FSISQIFSQAMAARSINRPMLQAAIALKKKGFTTCIVTN T0371 169 :DNTYPLTKTDVAIA 1cr6B 131 :DKRDSLAQMMCELS T0371 185 :GVATMI 1cr6B 145 :QHFDFL T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1cr6B 151 :IESCQVGMIKPEPQIYNFLLDTL T0371 221 :EISKREILMVGDT 1cr6B 174 :KAKPNEVVFLDDF T0371 235 :HTDILGGNKFGLDTALVLT 1cr6B 187 :GSNLKPARDMGMVTILVHN T0371 254 :GNTRIDDAETKIKSTGIVP 1cr6B 207 :ASALRELEKVTGTQFPEAP Number of specific fragments extracted= 11 number of extra gaps= 0 total=1604 Number of alignments=116 # 1cr6B read from 1cr6B/merged-good-all-a2m # found chain 1cr6B in template set Warning: unaligning (T0371)K14 because first residue in template chain is (1cr6B)R4 T0371 15 :CIFFDAFGVLKT 1cr6B 5 :VAAFDLDGVLAL T0371 29 :GLLPGIEN 1cr6B 17 :PSIAGAFR T0371 72 :FSITADKIISSG 1cr6B 30 :LALPRDFLLGAY T0371 84 :MITKEYIDLKV 1cr6B 48 :GPTEQLMKGKI T0371 103 :GTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDN 1cr6B 59 :TFSQWVPLMDESYRKSSKACGANLPENFSISQIFSQAMAARSINRPMLQAAIALKKKGFTTCIVTNNW T0371 173 :PLTKT 1cr6B 127 :LDDGD T0371 182 :AIGGVATMIESIL 1cr6B 132 :KRDSLAQMMCELS T0371 199 :IRFGKPDSQMFMFAYDML 1cr6B 156 :VGMIKPEPQIYNFLLDTL T0371 221 :EISKREILMVGDTLH 1cr6B 174 :KAKPNEVVFLDDFGS T0371 237 :DILGGNKFGLDTALVLTGNT 1cr6B 189 :NLKPARDMGMVTILVHNTAS Number of specific fragments extracted= 10 number of extra gaps= 0 total=1614 Number of alignments=117 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b30A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2b30A expands to /projects/compbio/data/pdb/2b30.pdb.gz 2b30A:# T0371 read from 2b30A/merged-good-all-a2m # 2b30A read from 2b30A/merged-good-all-a2m # adding 2b30A to template set # found chain 2b30A in template set Warning: unaligning (T0371)H147 because of BadResidue code BAD_PEPTIDE in next template residue (2b30A)E190 Warning: unaligning (T0371)D148 because of BadResidue code BAD_PEPTIDE at template residue (2b30A)E190 T0371 3 :IESFKSLL 2b30A 18 :VEEALKGA T0371 12 :KYKCIFFDAFGVLKTYNGLL 2b30A 26 :DIKLLLIDFDGTLFVDKDIK T0371 32 :PGIENTFDYLKAQGQDYYIVT 2b30A 48 :SENIDAIKEAIEKGYMVSICT T0371 56 :SRSPEQLADSY 2b30A 69 :GRSKVGILSAF T0371 67 :HKLGLFSIT 2b30A 85 :KKMNFYGMP T0371 79 :IISSGMITKEYI 2b30A 94 :GVYINGTIVYDQ T0371 91 :DLKVDGGIVAYLGTANSANYLVSDGI 2b30A 107 :GYTLLDETIETDVYAELISYLVEKNL T0371 130 :GEVNALVLLDDE 2b30A 177 :RTMNKLMIVLDP T0371 149 :LNKTVNLLRKR 2b30A 191 :SKTVIGNLKQK T0371 168 :TDNTYPLT 2b30A 203 :KNKLTIFT T0371 181 :IAIGG 2b30A 211 :TYNGH T0371 198 :FIRFGK 2b30A 220 :KLGHDK T0371 206 :SQMFMFAYDML 2b30A 226 :YTGINYLLKHY T0371 221 :EISKREILMVGDT 2b30A 237 :NISNDQVLVVGDA T0371 235 :HTDILGGN 2b30A 250 :ENDIAMLS T0371 245 :GLDTALVL 2b30A 258 :NFKYSFAV T0371 255 :NTRIDDAETK 2b30A 266 :ANATDSAKSH T0371 272 :PTHICE 2b30A 276 :AKCVLP Number of specific fragments extracted= 18 number of extra gaps= 1 total=1632 Number of alignments=118 # 2b30A read from 2b30A/merged-good-all-a2m # found chain 2b30A in template set Warning: unaligning (T0371)Q2 because first residue in template chain is (2b30A)K17 Warning: unaligning (T0371)G142 because of BadResidue code BAD_PEPTIDE in next template residue (2b30A)E190 Warning: unaligning (T0371)D148 because of BadResidue code BAD_PEPTIDE at template residue (2b30A)E190 T0371 3 :IESFKSLLP 2b30A 18 :VEEALKGAD T0371 13 :YKCIFFDAFGVL 2b30A 27 :IKLLLIDFDGTL T0371 25 :KTYNGLL 2b30A 40 :VDKDIKV T0371 32 :PGIENTFDYLKAQGQDYYIVTNDASRSP 2b30A 48 :SENIDAIKEAIEKGYMVSICTGRSKVGI T0371 60 :EQLADSY 2b30A 81 :EENLKKM T0371 73 :SIT 2b30A 88 :NFY T0371 76 :ADKIISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDGI 2b30A 92 :MPGVYINGTIVYDQIGYTLLDETIETDVYAELISYLVEKNL T0371 117 :KMLPVSAIDDSNI 2b30A 143 :SNYVTEDNKYADF T0371 130 :GEVNALVLLDDE 2b30A 177 :RTMNKLMIVLDP T0371 149 :LNKTVNLLRKR 2b30A 191 :SKTVIGNLKQK T0371 161 :I 2b30A 202 :F T0371 169 :DNTYP 2b30A 203 :KNKLT T0371 180 :AI 2b30A 208 :IF T0371 194 :LGRRF 2b30A 210 :TTYNG T0371 199 :IRFGK 2b30A 219 :TKLGH T0371 208 :MFMFAYDMLRQKMEISKREILMVGDTLH 2b30A 224 :DKYTGINYLLKHYNISNDQVLVVGDAEN T0371 237 :DILGGNKFGL 2b30A 252 :DIAMLSNFKY T0371 248 :TALV 2b30A 262 :SFAV T0371 255 :NTRIDDAETK 2b30A 266 :ANATDSAKSH T0371 272 :PTHICE 2b30A 276 :AKCVLP Number of specific fragments extracted= 20 number of extra gaps= 1 total=1652 Number of alignments=119 # 2b30A read from 2b30A/merged-good-all-a2m # found chain 2b30A in template set Warning: unaligning (T0371)S5 because first residue in template chain is (2b30A)K17 Warning: unaligning (T0371)G142 because of BadResidue code BAD_PEPTIDE in next template residue (2b30A)E190 Warning: unaligning (T0371)D148 because of BadResidue code BAD_PEPTIDE at template residue (2b30A)E190 T0371 6 :FKSLLPK 2b30A 18 :VEEALKG T0371 13 :YKCIFFDAFGVLKTYNG 2b30A 27 :IKLLLIDFDGTLFVDKD T0371 30 :LLPGIENTFDYLKAQGQDYYIVTNDA 2b30A 46 :VPSENIDAIKEAIEKGYMVSICTGRS T0371 63 :ADSYHKLGL 2b30A 72 :KVGILSAFG T0371 72 :FSITADKI 2b30A 113 :ETIETDVY T0371 105 :ANSANYLVSDGIK 2b30A 121 :AELISYLVEKNLV T0371 123 :AIDDSNIGEVNALVLLDDE 2b30A 170 :HNEMLKYRTMNKLMIVLDP T0371 149 :LNKTVNLLRKR 2b30A 191 :SKTVIGNLKQK T0371 199 :IRFGKPDSQMFMFAYDML 2b30A 219 :TKLGHDKYTGINYLLKHY T0371 221 :EISKREILMVGDTLH 2b30A 237 :NISNDQVLVVGDAEN T0371 237 :DILGGNKFGLDTA 2b30A 252 :DIAMLSNFKYSFA Number of specific fragments extracted= 11 number of extra gaps= 1 total=1663 Number of alignments=120 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ymqA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ymqA expands to /projects/compbio/data/pdb/1ymq.pdb.gz 1ymqA:# T0371 read from 1ymqA/merged-good-all-a2m # 1ymqA read from 1ymqA/merged-good-all-a2m # adding 1ymqA to template set # found chain 1ymqA in template set Warning: unaligning (T0371)Y13 because first residue in template chain is (1ymqA)T2 T0371 14 :KCIFFDAFGVLKTYNGLL 1ymqA 3 :KALFFDIDGTLVSFETHR T0371 32 :PGIENTFDYLKAQGQDYYIVT 1ymqA 23 :SSTIEALEAAHAKGLKIFIAT T0371 56 :SRS 1ymqA 44 :GRP T0371 64 :DSYHKLGLFS 1ymqA 54 :SELQDRNLID T0371 78 :KIISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDGIK 1ymqA 64 :GYITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVP T0371 135 :LVLLDDEG 1ymqA 104 :CIFVEEHN T0371 143 :FNWFHDLNK 1ymqA 115 :CQPNEMVKK T0371 155 :LLRKR 1ymqA 124 :IFYDF T0371 160 :TI 1ymqA 168 :TC T0371 201 :FGKPDSQMFMFAYDML 1ymqA 184 :KGDTKQKGIDEIIRHF T0371 221 :EISKREILMVGDT 1ymqA 200 :GIKLEETMSFGDG T0371 235 :HTDILGGNKF 1ymqA 213 :GNDISMLRHA T0371 247 :DTALVL 1ymqA 223 :AIGVAM T0371 254 :GNTR 1ymqA 229 :GQAK T0371 259 :DDAETK 1ymqA 233 :EDVKAA T0371 272 :PTHICES 1ymqA 239 :ADYVTAP T0371 280 :VIE 1ymqA 246 :IDE Number of specific fragments extracted= 17 number of extra gaps= 0 total=1680 Number of alignments=121 # 1ymqA read from 1ymqA/merged-good-all-a2m # found chain 1ymqA in template set Warning: unaligning (T0371)Y13 because first residue in template chain is (1ymqA)T2 T0371 14 :KCIFFDAFGVLKTYN 1ymqA 3 :KALFFDIDGTLVSFE T0371 29 :GLL 1ymqA 19 :HRI T0371 32 :PGIENTFDYLKAQGQDYYIVTNDASR 1ymqA 23 :SSTIEALEAAHAKGLKIFIATGRPKA T0371 64 :DSYHKLGLFSI 1ymqA 54 :SELQDRNLIDG T0371 78 :KIISS 1ymqA 65 :YITMN T0371 84 :MITKEYIDLKVDGGIVA 1ymqA 70 :GAYCFVGEEVIYKSAIP T0371 146 :FHDLNKTVNLLRKRTIPAIVANTDN 1ymqA 87 :QEEVKAMAAFCEKKGVPCIFVEEHN T0371 182 :AIGGVAT 1ymqA 116 :QPNEMVK T0371 191 :ESI 1ymqA 123 :KIF T0371 194 :LGRRFIRFGK 1ymqA 177 :AFADVTAKGD T0371 208 :MFMFAYDMLRQKMEISKREILMVGDT 1ymqA 187 :TKQKGIDEIIRHFGIKLEETMSFGDG T0371 235 :HTDILGGNKFG 1ymqA 213 :GNDISMLRHAA T0371 247 :DTALVLTGN 1ymqA 224 :IGVAMGQAK T0371 259 :DDAETK 1ymqA 233 :EDVKAA T0371 272 :PTHICES 1ymqA 239 :ADYVTAP T0371 280 :VIE 1ymqA 246 :IDE Number of specific fragments extracted= 16 number of extra gaps= 0 total=1696 Number of alignments=122 # 1ymqA read from 1ymqA/merged-good-all-a2m # found chain 1ymqA in template set Warning: unaligning (T0371)Y13 because first residue in template chain is (1ymqA)T2 T0371 14 :KCIFFDAFGVLKTYNG 1ymqA 3 :KALFFDIDGTLVSFET T0371 30 :LLPGIENTFDYLKAQGQDYYIVTNDA 1ymqA 21 :IPSSTIEALEAAHAKGLKIFIATGRP T0371 77 :DKIISSG 1ymqA 47 :KAIINNL T0371 109 :NYLVSDGIKMLP 1ymqA 54 :SELQDRNLIDGY T0371 129 :IGEVNALVLLDDEGFN 1ymqA 66 :ITMNGAYCFVGEEVIY T0371 145 :WFHDLNKTVNLLRKRTIPAIVANTDNT 1ymqA 86 :PQEEVKAMAAFCEKKGVPCIFVEEHNI T0371 178 :DVAIAIGGVATMIESIL 1ymqA 113 :SVCQPNEMVKKIFYDFL T0371 204 :PDSQMFMFAYDML 1ymqA 187 :TKQKGIDEIIRHF T0371 221 :EISKREILMVGDTLH 1ymqA 200 :GIKLEETMSFGDGGN T0371 237 :DILGGNKFG 1ymqA 215 :DISMLRHAA T0371 249 :ALVLTGNTRIDDAE 1ymqA 224 :IGVAMGQAKEDVKA T0371 267 :STGIVPTHICE 1ymqA 238 :AADYVTAPIDE Number of specific fragments extracted= 12 number of extra gaps= 0 total=1708 Number of alignments=123 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nf2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nf2A expands to /projects/compbio/data/pdb/1nf2.pdb.gz 1nf2A:# T0371 read from 1nf2A/merged-good-all-a2m # 1nf2A read from 1nf2A/merged-good-all-a2m # adding 1nf2A to template set # found chain 1nf2A in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1nf2A)M1 T0371 13 :YKCIFFDAFGVLKTYNGLL 1nf2A 2 :YRVFVFDLDGTLLNDNLEI T0371 32 :PGIENTFDYLKAQ 1nf2A 22 :EKDRRNIEKLSRK T0371 46 :QDYYIVT 1nf2A 35 :CYVVFAS T0371 56 :SRSPEQLADSYHKL 1nf2A 42 :GRMLVSTLNVEKKY T0371 72 :FSIT 1nf2A 58 :RTFP T0371 79 :IISSGMITKEYI 1nf2A 62 :TIAYNGAIVYLP T0371 91 :DLKVDGGIVAYLGTANSANYLVSDGIKMLPVSAID 1nf2A 75 :EGVILNEKIPPEVAKDIIEYIKPLNVHWQAYIDDV T0371 130 :GEVNALVLLDDEGFNWFHDLNKTV 1nf2A 117 :EEIKSYARHSNVDYRVEPNLSELV T0371 157 :RKRTIPA 1nf2A 141 :SKMGTTK T0371 164 :IVANT 1nf2A 149 :LLIDT T0371 175 :TKT 1nf2A 154 :PER T0371 186 :VATMIESILGRR 1nf2A 157 :LDELKEILSERF T0371 201 :FGK 1nf2A 189 :VDK T0371 206 :SQMFMFAYDML 1nf2A 192 :GKALRFLRERM T0371 221 :EISKREILMVGDT 1nf2A 203 :NWKKEEIVVFGDN T0371 235 :HTDILGGNKFGLDTA 1nf2A 216 :ENDLFMFEEAGLRVA T0371 252 :L 1nf2A 231 :M T0371 255 :NTRIDDAETK 1nf2A 232 :ENAIEKVKEA T0371 272 :PTHI 1nf2A 242 :SDIV Number of specific fragments extracted= 19 number of extra gaps= 0 total=1727 Number of alignments=124 # 1nf2A read from 1nf2A/merged-good-all-a2m # found chain 1nf2A in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1nf2A)M1 T0371 13 :YKCIFFDAFGVLKTYNGLL 1nf2A 2 :YRVFVFDLDGTLLNDNLEI T0371 32 :PGIENTFDYLKAQ 1nf2A 22 :EKDRRNIEKLSRK T0371 46 :QDYYIVTNDA 1nf2A 35 :CYVVFASGRM T0371 59 :PEQLADSYHKLGLFSITA 1nf2A 45 :LVSTLNVEKKYFKRTFPT T0371 79 :IISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDGIKM 1nf2A 63 :IAYNGAIVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVHW T0371 120 :PVSAID 1nf2A 111 :YSEKDN T0371 130 :GEVNALVLLDDEGFNWFHDLNK 1nf2A 117 :EEIKSYARHSNVDYRVEPNLSE T0371 155 :LLRKRTIPAIVANTDNTYP 1nf2A 139 :LVSKMGTTKLLLIDTPERL T0371 175 :TKTDVAIA 1nf2A 158 :DELKEILS T0371 191 :ESI 1nf2A 166 :ERF T0371 209 :FMFAYDMLRQKMEISKREILMVGDT 1nf2A 191 :KGKALRFLRERMNWKKEEIVVFGDN T0371 235 :HTDILGGNKFG 1nf2A 216 :ENDLFMFEEAG T0371 247 :DTALVLTG 1nf2A 227 :LRVAMENA T0371 258 :IDDAETK 1nf2A 235 :IEKVKEA T0371 272 :PTHIC 1nf2A 242 :SDIVT Number of specific fragments extracted= 15 number of extra gaps= 0 total=1742 Number of alignments=125 # 1nf2A read from 1nf2A/merged-good-all-a2m # found chain 1nf2A in template set T0371 13 :YKCIFFDAFGVLKTYNG 1nf2A 2 :YRVFVFDLDGTLLNDNL T0371 30 :LLPGIENTFDYLKA 1nf2A 20 :ISEKDRRNIEKLSR T0371 45 :GQDYYIVTNDA 1nf2A 34 :KCYVVFASGRM T0371 83 :GMITKEYIDLKVDGGIVAYL 1nf2A 45 :LVSTLNVEKKYFKRTFPTIA T0371 132 :VNALVLLDDEG 1nf2A 65 :YNGAIVYLPEE T0371 143 :FNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLT 1nf2A 82 :KIPPEVAKDIIEYIKPLNVHWQAYIDDVLYSEK T0371 182 :AIGGVATMIESIL 1nf2A 115 :DNEEIKSYARHSN T0371 203 :KPDSQMFMFAYDML 1nf2A 189 :VDKGKALRFLRERM T0371 221 :EISKREILMVGDTLH 1nf2A 203 :NWKKEEIVVFGDNEN T0371 237 :DILGGNKFGLDTA 1nf2A 218 :DLFMFEEAGLRVA Number of specific fragments extracted= 10 number of extra gaps= 0 total=1752 Number of alignments=126 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qq5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0371 read from 1qq5A/merged-good-all-a2m # 1qq5A read from 1qq5A/merged-good-all-a2m # found chain 1qq5A in training set Warning: unaligning (T0371)K12 because first residue in template chain is (1qq5A)M1 T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENT 1qq5A 2 :IKAVVFDAYGTLFDVQSVADATERA T0371 56 :SR 1qq5A 29 :GR T0371 59 :PEQLADSYHKL 1qq5A 31 :GEYITQVWRQK T0371 79 :I 1qq5A 42 :Q T0371 83 :GMITKEYI 1qq5A 43 :LEYSWLRA T0371 91 :DLKV 1qq5A 52 :MGRY T0371 97 :GIVAYLGTANSANYLVSDGI 1qq5A 56 :ADFWSVTREALAYTLGTLGL T0371 122 :SAIDDSNIGEVNAL 1qq5A 76 :EPDESFLADMAQAY T0371 141 :EGFNWFHDLNKTVNLLR 1qq5A 90 :NRLTPYPDAAQCLAELA T0371 160 :TIPA 1qq5A 107 :PLKR T0371 164 :IVANTDNTY 1qq5A 112 :ILSNGAPDM T0371 174 :LTKTDVAIA 1qq5A 121 :LQALVANAG T0371 186 :VATMIESILGRRFIRFGKPDSQMFMFAYDML 1qq5A 130 :LTDSFDAVISVDAKRVFKPHPDSYALVEEVL T0371 221 :EISKREILMVGDT 1qq5A 161 :GVTPAEVLFVSSN T0371 235 :HTDILGGNKFGLDTALVL 1qq5A 174 :GFDVGGAKNFGFSVARVA T0371 255 :NTRIDDAETKIKSTGI 1qq5A 192 :RLSQEALARELVSGTI T0371 272 :PTHICES 1qq5A 227 :PDFVVPA T0371 280 :VIEL 1qq5A 234 :LGDL Number of specific fragments extracted= 18 number of extra gaps= 0 total=1770 Number of alignments=127 # 1qq5A read from 1qq5A/merged-good-all-a2m # found chain 1qq5A in training set Warning: unaligning (T0371)K12 because first residue in template chain is (1qq5A)M1 T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENT 1qq5A 2 :IKAVVFDAYGTLFDVQSVADATERA T0371 55 :ASRSPEQLADSYHK 1qq5A 27 :YPGRGEYITQVWRQ T0371 84 :MITKEYIDLKVDG 1qq5A 41 :KQLEYSWLRALMG T0371 97 :GIVAYLGTANSANYLVSDGIKML 1qq5A 56 :ADFWSVTREALAYTLGTLGLEPD T0371 130 :GEVNALVLLDDEGFNWFHDLNKTVNLL 1qq5A 79 :ESFLADMAQAYNRLTPYPDAAQCLAEL T0371 159 :RTIPAIVANTDNTYPLTKTDVAIAIGGVATMI 1qq5A 106 :APLKRAILSNGAPDMLQALVANAGLTDSFDAV T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1qq5A 138 :ISVDAKRVFKPHPDSYALVEEVL T0371 221 :EISKREILMVGDTLH 1qq5A 161 :GVTPAEVLFVSSNGF T0371 237 :DILGGNKFGLDTALVLT 1qq5A 176 :DVGGAKNFGFSVARVAR T0371 256 :TRIDDAETKIKSTGIV 1qq5A 193 :LSQEALARELVSGTIA T0371 272 :PTHICES 1qq5A 227 :PDFVVPA T0371 280 :VIEL 1qq5A 234 :LGDL Number of specific fragments extracted= 12 number of extra gaps= 0 total=1782 Number of alignments=128 # 1qq5A read from 1qq5A/merged-good-all-a2m # found chain 1qq5A in training set T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENT 1qq5A 2 :IKAVVFDAYGTLFDVQSVADATERA T0371 38 :FDYLKA 1qq5A 35 :TQVWRQ T0371 57 :RSPEQLADSYHKLGL 1qq5A 41 :KQLEYSWLRALMGRY T0371 80 :ISSGMITKEY 1qq5A 56 :ADFWSVTREA T0371 107 :SANYLVSDGIKM 1qq5A 66 :LAYTLGTLGLEP T0371 129 :IGEVNALVLLDDEGFNWFHDLNKTVNLL 1qq5A 78 :DESFLADMAQAYNRLTPYPDAAQCLAEL T0371 159 :RTIPAIVANTD 1qq5A 106 :APLKRAILSNG T0371 182 :AIGGVATMIESIL 1qq5A 117 :APDMLQALVANAG T0371 201 :FGKPDSQMFMFAYDML 1qq5A 145 :VFKPHPDSYALVEEVL T0371 221 :EISKREILMVGDTLH 1qq5A 161 :GVTPAEVLFVSSNGF T0371 237 :DILGGNKFGLDTALVLT 1qq5A 176 :DVGGAKNFGFSVARVAR T0371 256 :TRIDDAE 1qq5A 193 :LSQEALA T0371 263 :TKIKSTGIVPTHICESAVI 1qq5A 222 :TYAEAPDFVVPALGDLPRL Number of specific fragments extracted= 13 number of extra gaps= 0 total=1795 Number of alignments=129 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fi1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2fi1A expands to /projects/compbio/data/pdb/2fi1.pdb.gz 2fi1A:# T0371 read from 2fi1A/merged-good-all-a2m # 2fi1A read from 2fi1A/merged-good-all-a2m # adding 2fi1A to template set # found chain 2fi1A in template set Warning: unaligning (T0371)L10 because first residue in template chain is (2fi1A)M4 T0371 12 :KYKCIFFDAFGVLKTYNGLL 2fi1A 5 :KYHDYIWDLGGTLLDNYETS T0371 59 :PEQLADSYHKLGL 2fi1A 25 :TAAFVETLALYGI T0371 73 :SITADKI 2fi1A 38 :TQDHDSV T0371 83 :GMITK 2fi1A 45 :YQALK T0371 102 :LGTANSANYLVS 2fi1A 50 :VSTPFAIETFAP T0371 115 :GI 2fi1A 62 :NL T0371 126 :DSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTY 2fi1A 64 :ENFLEKYKENEARELEHPILFEGVSDLLEDISNQGGRHFLVSHRNDQ T0371 174 :LTKTDVAIA 2fi1A 111 :VLEILEKTS T0371 186 :VATMIESILGRRFIRFGKPDSQMFMFAYDML 2fi1A 120 :IAAYFTEVVTSSSGFKRKPNPESMLYLREKY T0371 221 :EI 2fi1A 151 :QI T0371 225 :REILMVGDT 2fi1A 153 :SSGLVIGDR T0371 235 :HTDILGGNKFGLDTA 2fi1A 162 :PIDIEAGQAAGLDTH T0371 254 :GNTRIDDAETKI 2fi1A 177 :LFTSIVNLRQVL Number of specific fragments extracted= 13 number of extra gaps= 0 total=1808 Number of alignments=130 # 2fi1A read from 2fi1A/merged-good-all-a2m # found chain 2fi1A in template set Warning: unaligning (T0371)L10 because first residue in template chain is (2fi1A)M4 T0371 11 :P 2fi1A 5 :K T0371 13 :YKCIFFDAFGVLKTYNGLL 2fi1A 6 :YHDYIWDLGGTLLDNYETS T0371 32 :PGIENTFDY 2fi1A 26 :AAFVETLAL T0371 44 :QGQ 2fi1A 35 :YGI T0371 56 :SRSPEQLADSY 2fi1A 38 :TQDHDSVYQAL T0371 73 :SITAD 2fi1A 49 :KVSTP T0371 106 :NSANYL 2fi1A 54 :FAIETF T0371 122 :SAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYP 2fi1A 60 :APNLENFLEKYKENEARELEHPILFEGVSDLLEDISNQGGRHFLVSHRNDQV T0371 175 :TKTDVAIAIGGVATMI 2fi1A 112 :LEILEKTSIAAYFTEV T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 2fi1A 128 :VTSSSGFKRKPNPESMLYLREKY T0371 221 :EI 2fi1A 151 :QI T0371 225 :REILMVGDTLH 2fi1A 153 :SSGLVIGDRPI T0371 237 :DILGGNKFGLDTALV 2fi1A 164 :DIEAGQAAGLDTHLF T0371 256 :TRIDDAETKI 2fi1A 179 :TSIVNLRQVL Number of specific fragments extracted= 14 number of extra gaps= 0 total=1822 Number of alignments=131 # 2fi1A read from 2fi1A/merged-good-all-a2m # found chain 2fi1A in template set T0371 12 :KYKCIFFDAFGVLKTYNGL 2fi1A 5 :KYHDYIWDLGGTLLDNYET T0371 33 :GIENTFDYLKAQGQD 2fi1A 24 :STAAFVETLALYGIT T0371 57 :RSPEQLADSYHK 2fi1A 39 :QDHDSVYQALKV T0371 107 :SANYLVSDGIKMLP 2fi1A 51 :STPFAIETFAPNLE T0371 127 :SNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTD 2fi1A 65 :NFLEKYKENEARELEHPILFEGVSDLLEDISNQGGRHFLVSHR T0371 183 :IGGVATMIESIL 2fi1A 108 :NDQVLEILEKTS T0371 195 :GRRFIRFGKPDSQMFMFAYDML 2fi1A 129 :TSSSGFKRKPNPESMLYLREKY T0371 221 :EI 2fi1A 151 :QI T0371 225 :REILMVGDTLH 2fi1A 153 :SSGLVIGDRPI T0371 237 :DILGGNKFGLDT 2fi1A 164 :DIEAGQAAGLDT T0371 270 :IVPTHICESAV 2fi1A 176 :HLFTSIVNLRQ Number of specific fragments extracted= 11 number of extra gaps= 0 total=1833 Number of alignments=132 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rlmA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rlmA expands to /projects/compbio/data/pdb/1rlm.pdb.gz 1rlmA:# T0371 read from 1rlmA/merged-good-all-a2m # 1rlmA read from 1rlmA/merged-good-all-a2m # adding 1rlmA to template set # found chain 1rlmA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1rlmA)A2 T0371 13 :YKCIFFDAFGVLKTYNGLL 1rlmA 3 :VKVIVTDMDGTFLNDAKTY T0371 32 :PGIENTFDYLKAQGQDYYIVT 1rlmA 24 :PRFMAQYQELKKRGIKFVVAS T0371 56 :SRSPEQL 1rlmA 45 :GNQYYQL T0371 71 :L 1rlmA 82 :G T0371 73 :SITADKI 1rlmA 83 :ELTRHES T0371 83 :GMITKEYID 1rlmA 90 :RIVIGELLK T0371 94 :VDGGIVAY 1rlmA 99 :DKQLNFVA T0371 102 :LGTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEG 1rlmA 117 :NAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQ T0371 146 :FHDLN 1rlmA 158 :IPLVI T0371 154 :NLLRK 1rlmA 163 :DKLHV T0371 169 :DNTY 1rlmA 170 :DGIM T0371 175 :TKTDVAIA 1rlmA 174 :KPVTSGFG T0371 198 :FIRFGK 1rlmA 187 :IPGLHK T0371 206 :SQMFMFAYDML 1rlmA 193 :ANGISRLLKRW T0371 221 :EISKREILMVGDT 1rlmA 204 :DLSPQNVVAIGDS T0371 235 :HTDILGGNK 1rlmA 217 :GNDAEMLKM T0371 246 :LDTALVL 1rlmA 226 :ARYSFAM T0371 254 :GN 1rlmA 233 :GN T0371 257 :RIDDAETK 1rlmA 235 :AAENIKQI T0371 272 :PTHICES 1rlmA 243 :ARYATDD T0371 280 :VIE 1rlmA 250 :NNH Number of specific fragments extracted= 21 number of extra gaps= 0 total=1854 Number of alignments=133 # 1rlmA read from 1rlmA/merged-good-all-a2m # found chain 1rlmA in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1rlmA)A2 T0371 13 :YKCIFFDAFGVLKTYNGLL 1rlmA 3 :VKVIVTDMDGTFLNDAKTY T0371 32 :PGIENTFDYLKAQGQDYYIVTNDA 1rlmA 24 :PRFMAQYQELKKRGIKFVVASGNQ T0371 63 :ADSY 1rlmA 48 :YYQL T0371 76 :ADK 1rlmA 52 :ISF T0371 79 :IISSGMITK 1rlmA 65 :VAENGALVY T0371 89 :YIDLKVDGGIVAYLGTANSANYLVSDG 1rlmA 74 :EHGKQLFHGELTRHESRIVIGELLKDK T0371 116 :IKM 1rlmA 102 :LNF T0371 119 :LPVSAIDDSNI 1rlmA 113 :YVSENAPEAFV T0371 130 :GEVNALVLLDDE 1rlmA 144 :DVLFKFSLNLPD T0371 147 :HDLNKTVNLLRKR 1rlmA 156 :EQIPLVIDKLHVA T0371 183 :IGGVATMI 1rlmA 169 :LDGIMKPV T0371 194 :LGRRF 1rlmA 177 :TSGFG T0371 199 :IRFGK 1rlmA 186 :IIPGL T0371 208 :MFMFAYDMLRQKMEISKREILMVGDTLH 1rlmA 191 :HKANGISRLLKRWDLSPQNVVAIGDSGN T0371 237 :DILGGNKFGL 1rlmA 219 :DAEMLKMARY T0371 248 :TALVL 1rlmA 229 :SFAMG T0371 256 :TRIDDAETK 1rlmA 234 :NAAENIKQI T0371 272 :PTHICES 1rlmA 243 :ARYATDD T0371 280 :VI 1rlmA 250 :NN Number of specific fragments extracted= 19 number of extra gaps= 0 total=1873 Number of alignments=134 # 1rlmA read from 1rlmA/merged-good-all-a2m # found chain 1rlmA in template set T0371 13 :YKCIFFDAFGVLKTYNG 1rlmA 3 :VKVIVTDMDGTFLNDAK T0371 30 :LLPGIENTFDYLKAQGQDYYIVTNDA 1rlmA 22 :NQPRFMAQYQELKKRGIKFVVASGNQ T0371 63 :ADSYHKLGL 1rlmA 48 :YYQLISFFP T0371 72 :FSITADKII 1rlmA 82 :GELTRHESR T0371 85 :ITKEYIDLK 1rlmA 91 :IVIGELLKD T0371 95 :D 1rlmA 100 :K T0371 96 :GGIVAYL 1rlmA 109 :LQSAYVS T0371 103 :GTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEG 1rlmA 118 :APEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQ T0371 146 :FHDLNKTVN 1rlmA 158 :IPLVIDKLH T0371 160 :TIP 1rlmA 171 :GIM T0371 170 :NTYPLTKTDV 1rlmA 174 :KPVTSGFGFI T0371 199 :IRFGKPDSQMFMFAYDML 1rlmA 186 :IIPGLHKANGISRLLKRW T0371 221 :EISKREILMVGDTLH 1rlmA 204 :DLSPQNVVAIGDSGN T0371 237 :DILGGNKFGLDTA 1rlmA 219 :DAEMLKMARYSFA T0371 253 :TGNTRID 1rlmA 232 :MGNAAEN T0371 261 :AET 1rlmA 239 :IKQ T0371 267 :STGIVPTHICE 1rlmA 242 :IARYATDDNNH Number of specific fragments extracted= 17 number of extra gaps= 0 total=1890 Number of alignments=135 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rlmB/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rlmB expands to /projects/compbio/data/pdb/1rlm.pdb.gz 1rlmB:# T0371 read from 1rlmB/merged-good-all-a2m # 1rlmB read from 1rlmB/merged-good-all-a2m # adding 1rlmB to template set # found chain 1rlmB in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1rlmB)A2 T0371 13 :YKCIFFDAFGVLKTYNGLL 1rlmB 3 :VKVIVTDMDGTFLNDAKTY T0371 32 :PGIENTFDYLKAQGQDYYIVT 1rlmB 24 :PRFMAQYQELKKRGIKFVVAS T0371 56 :SRSPEQL 1rlmB 45 :GNQYYQL T0371 71 :L 1rlmB 82 :G T0371 73 :SITADKI 1rlmB 83 :ELTRHES T0371 83 :GMITKEYID 1rlmB 90 :RIVIGELLK T0371 94 :VDGGIVAY 1rlmB 99 :DKQLNFVA T0371 102 :LGTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEG 1rlmB 117 :NAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQ T0371 146 :FHDLNK 1rlmB 158 :IPLVID T0371 155 :LLRKR 1rlmB 164 :KLHVA T0371 169 :DNTY 1rlmB 170 :DGIM T0371 175 :TKTDVAIA 1rlmB 174 :KPVTSGFG T0371 198 :FIRFGK 1rlmB 187 :IPGLHK T0371 206 :SQMFMFAYDML 1rlmB 193 :ANGISRLLKRW T0371 221 :EISKREILMVGDT 1rlmB 204 :DLSPQNVVAIGDS T0371 235 :HTDILGGNKF 1rlmB 217 :GNDAEMLKMA T0371 247 :DTALVL 1rlmB 227 :RYSFAM T0371 254 :GNT 1rlmB 233 :GNA T0371 258 :IDDAETK 1rlmB 236 :AENIKQI T0371 272 :PTHICES 1rlmB 243 :ARYATDD T0371 280 :VIE 1rlmB 250 :NNH Number of specific fragments extracted= 21 number of extra gaps= 0 total=1911 Number of alignments=136 # 1rlmB read from 1rlmB/merged-good-all-a2m # found chain 1rlmB in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1rlmB)A2 T0371 13 :YKCIFFDAFGVLKTYNGLL 1rlmB 3 :VKVIVTDMDGTFLNDAKTY T0371 32 :PGIENTFDYLKAQGQDYYIVTNDA 1rlmB 24 :PRFMAQYQELKKRGIKFVVASGNQ T0371 63 :ADSY 1rlmB 48 :YYQL T0371 76 :ADK 1rlmB 52 :ISF T0371 79 :IISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSD 1rlmB 64 :FVAENGALVYEHGKQLFHGELTRHESRIVIGELLKD T0371 130 :GEVNALVLLDD 1rlmB 100 :KQLNFVACGLQ T0371 141 :EGFN 1rlmB 116 :ENAP T0371 150 :NKTVNLLRKR 1rlmB 120 :EAFVALMAKH T0371 161 :I 1rlmB 130 :Y T0371 171 :TYPLTKTDVAIA 1rlmB 155 :DEQIPLVIDKLH T0371 183 :IGGVATMI 1rlmB 169 :LDGIMKPV T0371 194 :LGRRF 1rlmB 177 :TSGFG T0371 199 :IRFGKP 1rlmB 186 :IIPGLH T0371 209 :FMFAYDMLRQKMEISKREILMVGDT 1rlmB 192 :KANGISRLLKRWDLSPQNVVAIGDS T0371 235 :HTDILGGNKFGL 1rlmB 217 :GNDAEMLKMARY T0371 248 :TALVLTG 1rlmB 229 :SFAMGNA T0371 258 :IDDAETK 1rlmB 236 :AENIKQI T0371 272 :PTHICES 1rlmB 243 :ARYATDD T0371 280 :VI 1rlmB 250 :NN Number of specific fragments extracted= 19 number of extra gaps= 0 total=1930 Number of alignments=137 # 1rlmB read from 1rlmB/merged-good-all-a2m # found chain 1rlmB in template set T0371 13 :YKCIFFDAFGVLKTYNG 1rlmB 3 :VKVIVTDMDGTFLNDAK T0371 30 :LLPGIENTFDYLKAQGQDYYIVTNDA 1rlmB 22 :NQPRFMAQYQELKKRGIKFVVASGNQ T0371 63 :ADSYHKLGL 1rlmB 48 :YYQLISFFP T0371 72 :FSITADKI 1rlmB 82 :GELTRHES T0371 87 :KEYIDLK 1rlmB 90 :RIVIGEL T0371 94 :VD 1rlmB 99 :DK T0371 96 :GGIVAYL 1rlmB 109 :LQSAYVS T0371 103 :GTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEG 1rlmB 118 :APEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQ T0371 146 :FHDLNKTVN 1rlmB 158 :IPLVIDKLH T0371 170 :NTYPLTKTDV 1rlmB 174 :KPVTSGFGFI T0371 199 :IRFGKPDSQMFMFAYDML 1rlmB 186 :IIPGLHKANGISRLLKRW T0371 221 :EISKREILMVGDTLH 1rlmB 204 :DLSPQNVVAIGDSGN T0371 237 :DILGGNKFGLDTA 1rlmB 219 :DAEMLKMARYSFA T0371 253 :TGNTRIDDAE 1rlmB 232 :MGNAAENIKQ T0371 267 :STGIVPTHICE 1rlmB 242 :IARYATDDNNH Number of specific fragments extracted= 15 number of extra gaps= 0 total=1945 Number of alignments=138 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ydfA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0371/1ydfA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0371/1ydfA/merged-good-all-a2m.gz for input Trying 1ydfA/merged-good-all-a2m Error: Couldn't open file 1ydfA/merged-good-all-a2m or 1ydfA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qq7A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1qq7A expands to /projects/compbio/data/pdb/1qq7.pdb.gz 1qq7A:Bad short name: C2 for alphabet: pdb_atoms Bad short name: C1 for alphabet: pdb_atoms Bad short name: O1 for alphabet: pdb_atoms Bad short name: O2 for alphabet: pdb_atoms Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 193, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 195, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 197, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 199, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 201, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 203, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 765, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 882, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 884, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 886, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1206, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1208, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1357, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1359, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1459, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1461, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1619, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1621, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1623, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1625, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1627, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1629, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1631, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1633, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1635, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1637, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1639, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1641, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1643, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1645, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1647, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1649, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1651, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1653, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1655, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1657, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1659, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1661, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1663, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1665, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1667, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1669, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1671, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1673, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1675, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1677, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1679, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1681, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1683, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1685, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1687, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1689, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1691, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1693, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1695, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1697, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1699, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1701, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1703, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1705, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1707, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1709, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1748, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1750, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1752, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1754, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1789, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1791, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1793, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1816, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1818, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1820, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1822, because occupancy 0.500 <= existing 0.500 in 1qq7A Skipped atom 1824, because occupancy 0.500 <= existing 0.500 in 1qq7A # T0371 read from 1qq7A/merged-good-all-a2m # 1qq7A read from 1qq7A/merged-good-all-a2m # adding 1qq7A to template set # found chain 1qq7A in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1qq7A)M1 Warning: unaligning (T0371)F18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qq7A)A9 Warning: unaligning (T0371)A20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qq7A)A9 T0371 13 :YKCIF 1qq7A 2 :IKAVV T0371 21 :FGVLKTYNGLLPGIENT 1qq7A 10 :YGTLFDVQSVADATERA T0371 56 :SR 1qq7A 29 :GR T0371 59 :PEQLADSYHKL 1qq7A 31 :GEYITQVWRQK T0371 79 :I 1qq7A 42 :Q T0371 83 :GMITKEYI 1qq7A 43 :LEYSWLRA T0371 91 :DLKV 1qq7A 52 :MGRY T0371 97 :GIVAYLGTANSANYLVSDGI 1qq7A 56 :ADFWSVTREALAYTLGTLGL T0371 122 :SAIDDSNIGEVNAL 1qq7A 76 :EPDESFLADMAQAY T0371 141 :EGFNWFHDLNKTVNLLR 1qq7A 90 :NRLTPYPDAAQCLAELA T0371 160 :TIPA 1qq7A 107 :PLKR T0371 164 :IVANTDNTY 1qq7A 112 :ILSNGAPDM T0371 174 :LTKTDVAIA 1qq7A 121 :LQALVANAG T0371 186 :VATMIESILGRRFIRFGKPDSQMFMFAYDML 1qq7A 130 :LTDSFDAVISVDAKRVFKPHPDSYALVEEVL T0371 221 :EISKREILMVGDT 1qq7A 161 :GVTPAEVLFVSSN T0371 235 :HTDILGGNKFGLDTALVL 1qq7A 174 :GFDVGGAKNFGFSVARVA T0371 255 :NTRIDDAETKIKSTGI 1qq7A 192 :RLSQEALARELVSGTI T0371 272 :PTHICES 1qq7A 227 :PDFVVPA T0371 280 :VIEL 1qq7A 234 :LGDL Number of specific fragments extracted= 19 number of extra gaps= 0 total=1964 Number of alignments=139 # 1qq7A read from 1qq7A/merged-good-all-a2m # found chain 1qq7A in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1qq7A)M1 Warning: unaligning (T0371)F18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qq7A)A9 Warning: unaligning (T0371)A20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qq7A)A9 T0371 13 :YKCIF 1qq7A 2 :IKAVV T0371 21 :FGVLKTYNGLLPGIENT 1qq7A 10 :YGTLFDVQSVADATERA T0371 55 :ASRSPEQLADSYH 1qq7A 27 :YPGRGEYITQVWR T0371 83 :GMITKEYIDLKVDG 1qq7A 40 :QKQLEYSWLRALMG T0371 97 :GIVAYLGTANSANYLVSDGIKML 1qq7A 56 :ADFWSVTREALAYTLGTLGLEPD T0371 130 :GEVNALVLLDDEGFNWFHDLNKTVNLL 1qq7A 79 :ESFLADMAQAYNRLTPYPDAAQCLAEL T0371 159 :RTIPAIVANTDNTYPLTKTDVAIAIGGVATMI 1qq7A 106 :APLKRAILSNGAPDMLQALVANAGLTDSFDAV T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1qq7A 138 :ISVDAKRVFKPHPDSYALVEEVL T0371 221 :EISKREILMVGDT 1qq7A 161 :GVTPAEVLFVSSN T0371 235 :HTDILGGNKFGLDTALVLT 1qq7A 174 :GFDVGGAKNFGFSVARVAR T0371 256 :TRIDDAETKIKSTGIV 1qq7A 193 :LSQEALARELVSGTIA T0371 272 :PTHICES 1qq7A 227 :PDFVVPA T0371 280 :VIEL 1qq7A 234 :LGDL Number of specific fragments extracted= 13 number of extra gaps= 0 total=1977 Number of alignments=140 # 1qq7A read from 1qq7A/merged-good-all-a2m # found chain 1qq7A in template set Warning: unaligning (T0371)F18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qq7A)A9 Warning: unaligning (T0371)A20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qq7A)A9 T0371 13 :YKCIF 1qq7A 2 :IKAVV T0371 21 :FGVLKTYNGLLPGIENT 1qq7A 10 :YGTLFDVQSVADATERA T0371 38 :FDYLKA 1qq7A 35 :TQVWRQ T0371 57 :RSPEQLADSYHKLGL 1qq7A 41 :KQLEYSWLRALMGRY T0371 80 :ISSGMITKEY 1qq7A 56 :ADFWSVTREA T0371 107 :SANYLVSDGIKM 1qq7A 66 :LAYTLGTLGLEP T0371 129 :IGEVNALVLLDDEGFNWFHDLNKTVNLL 1qq7A 78 :DESFLADMAQAYNRLTPYPDAAQCLAEL T0371 159 :RTIPAIVANTD 1qq7A 106 :APLKRAILSNG T0371 182 :AIGGVATMIESIL 1qq7A 117 :APDMLQALVANAG T0371 201 :FGKPDSQMFMFAYDML 1qq7A 145 :VFKPHPDSYALVEEVL T0371 221 :EISKREILMVGDTLH 1qq7A 161 :GVTPAEVLFVSSNGF T0371 237 :DILGGNKFGLDTALVLT 1qq7A 176 :DVGGAKNFGFSVARVAR T0371 256 :TRIDDAE 1qq7A 193 :LSQEALA T0371 263 :TKIKSTGIVPTHICESAV 1qq7A 222 :TYAEAPDFVVPALGDLPR Number of specific fragments extracted= 14 number of extra gaps= 0 total=1991 Number of alignments=141 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rloA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rloA expands to /projects/compbio/data/pdb/1rlo.pdb.gz 1rloA:Bad short name: BE for alphabet: pdb_atoms Bad short name: F1 for alphabet: pdb_atoms Bad short name: F2 for alphabet: pdb_atoms Bad short name: F3 for alphabet: pdb_atoms # T0371 read from 1rloA/merged-good-all-a2m # 1rloA read from 1rloA/merged-good-all-a2m # adding 1rloA to template set # found chain 1rloA in template set Warning: unaligning (T0371)Y13 because first residue in template chain is (1rloA)V3 Warning: unaligning (T0371)F18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rloA)M10 Warning: unaligning (T0371)A20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rloA)M10 T0371 14 :KCIF 1rloA 4 :KVIV T0371 21 :FGVLKTYNGLL 1rloA 11 :DGTFLNDAKTY T0371 32 :PGIENTFDYLKAQGQDYYIVT 1rloA 24 :PRFMAQYQELKKRGIKFVVAS T0371 56 :SRSPEQL 1rloA 45 :GNQYYQL T0371 68 :KLGL 1rloA 57 :ELKD T0371 73 :SIT 1rloA 61 :EIS T0371 79 :IISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSD 1rloA 64 :FVAENGALVYEHGKQLFHGELTRHESRIVIGELLKD T0371 115 :GIK 1rloA 101 :QLN T0371 134 :ALVLLDD 1rloA 104 :FVACGLQ T0371 141 :EGFN 1rloA 116 :ENAP T0371 150 :NKTVNLLRKRTIPA 1rloA 120 :EAFVALMAKHYHRL T0371 167 :NTDNTY 1rloA 136 :VKDYQE T0371 174 :LTKTDV 1rloA 142 :IDDVLF T0371 180 :AIAIG 1rloA 152 :NLPDE T0371 185 :GVATMIESILGRRFIR 1rloA 160 :LVIDKLHVALDGIMKP T0371 201 :FGK 1rloA 190 :LHK T0371 206 :SQMFMFAYDML 1rloA 193 :ANGISRLLKRW T0371 221 :EISKREILMVGDT 1rloA 204 :DLSPQNVVAIGDS T0371 235 :HTDILGGNK 1rloA 217 :GNDAEMLKM T0371 246 :LDTALVL 1rloA 226 :ARYSFAM T0371 254 :G 1rloA 233 :G T0371 256 :TRIDDAETK 1rloA 234 :NAAENIKQI T0371 272 :PTHICES 1rloA 243 :ARYATDD T0371 280 :VI 1rloA 250 :NN Number of specific fragments extracted= 24 number of extra gaps= 0 total=2015 Number of alignments=142 # 1rloA read from 1rloA/merged-good-all-a2m # found chain 1rloA in template set Warning: unaligning (T0371)Y13 because first residue in template chain is (1rloA)V3 Warning: unaligning (T0371)F18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rloA)M10 Warning: unaligning (T0371)A20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rloA)M10 T0371 14 :KCIF 1rloA 4 :KVIV T0371 21 :FGVLKTYNGLL 1rloA 11 :DGTFLNDAKTY T0371 32 :PGIENTFDYLKAQGQDYYIVTNDA 1rloA 24 :PRFMAQYQELKKRGIKFVVASGNQ T0371 63 :ADSYH 1rloA 48 :YYQLI T0371 68 :KLGL 1rloA 57 :ELKD T0371 73 :SIT 1rloA 61 :EIS T0371 79 :IIS 1rloA 65 :VAE T0371 83 :GMITKEYIDLKVDGGIVAYLGTANSANYLVSD 1rloA 68 :NGALVYEHGKQLFHGELTRHESRIVIGELLKD T0371 130 :GEVNALVLLDD 1rloA 100 :KQLNFVACGLQ T0371 141 :EGFN 1rloA 116 :ENAP T0371 150 :NKTVNLLRKR 1rloA 120 :EAFVALMAKH T0371 161 :I 1rloA 130 :Y T0371 171 :TYPLTKTDVAIA 1rloA 155 :DEQIPLVIDKLH T0371 183 :IGGVATMI 1rloA 169 :LDGIMKPV T0371 194 :LGRRF 1rloA 178 :SGFGF T0371 199 :IRFGKP 1rloA 186 :IIPGLH T0371 209 :FMFAYDMLRQKMEISKREILMVGDTLH 1rloA 192 :KANGISRLLKRWDLSPQNVVAIGDSGN T0371 237 :DILGGNKFGL 1rloA 219 :DAEMLKMARY T0371 248 :TALVL 1rloA 229 :SFAMG T0371 256 :TRIDDAETK 1rloA 234 :NAAENIKQI T0371 272 :PTHICES 1rloA 243 :ARYATDD T0371 280 :V 1rloA 250 :N Number of specific fragments extracted= 22 number of extra gaps= 0 total=2037 Number of alignments=143 # 1rloA read from 1rloA/merged-good-all-a2m # found chain 1rloA in template set Warning: unaligning (T0371)Y13 because first residue in template chain is (1rloA)V3 Warning: unaligning (T0371)F18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rloA)M10 Warning: unaligning (T0371)A20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rloA)M10 T0371 14 :KCIF 1rloA 4 :KVIV T0371 21 :FGVLKTYNG 1rloA 11 :DGTFLNDAK T0371 30 :LLPGIENTFDYLKAQGQDYYIVTNDA 1rloA 22 :NQPRFMAQYQELKKRGIKFVVASGNQ T0371 63 :ADSYHKLGL 1rloA 48 :YYQLISFFP T0371 72 :F 1rloA 82 :G T0371 80 :ISSGMITKEYIDLK 1rloA 83 :ELTRHESRIVIGEL T0371 94 :VD 1rloA 99 :DK T0371 96 :GGIVAYL 1rloA 109 :LQSAYVS T0371 103 :GTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEG 1rloA 118 :APEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQ T0371 146 :FHDLNKTVN 1rloA 158 :IPLVIDKLH T0371 155 :LL 1rloA 168 :AL T0371 168 :TDNTYPLTKTD 1rloA 170 :DGIMKPVTSGF T0371 179 :VAIAIGGVAT 1rloA 185 :LIIPGLHKAN T0371 208 :MFMFAYDML 1rloA 195 :GISRLLKRW T0371 221 :EISKREILMVGDTLH 1rloA 204 :DLSPQNVVAIGDSGN T0371 237 :DILGGNKFGLDTA 1rloA 219 :DAEMLKMARYSFA T0371 253 :TGNTR 1rloA 232 :MGNAA T0371 259 :DDAETK 1rloA 237 :ENIKQI T0371 268 :TGIVPTHICE 1rloA 243 :ARYATDDNNH Number of specific fragments extracted= 19 number of extra gaps= 0 total=2056 Number of alignments=144 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1aq6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1aq6A expands to /projects/compbio/data/pdb/1aq6.pdb.gz 1aq6A:# T0371 read from 1aq6A/merged-good-all-a2m # 1aq6A read from 1aq6A/merged-good-all-a2m # adding 1aq6A to template set # found chain 1aq6A in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1aq6A)M1 T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENT 1aq6A 2 :IKAVVFDAYGTLFDVQSVADATERA T0371 56 :SR 1aq6A 29 :GR T0371 59 :PEQLADSYHKL 1aq6A 31 :GEYITQVWRQK T0371 79 :I 1aq6A 42 :Q T0371 83 :GMITKEYI 1aq6A 43 :LEYSWLRA T0371 91 :DLKV 1aq6A 52 :MGRY T0371 97 :GIVAYLGTANSANYLVSDGI 1aq6A 56 :ADFWGVTREALAYTLGTLGL T0371 122 :SAIDDSNIGEVNAL 1aq6A 76 :EPDESFLADMAQAY T0371 141 :EGFNWFHDLNKTVNLLR 1aq6A 90 :NRLTPYPDAAQCLAELA T0371 160 :TIPA 1aq6A 107 :PLKR T0371 164 :IVANTDNTY 1aq6A 112 :ILSNGAPDM T0371 174 :LTKTDVAIA 1aq6A 121 :LQALVANAG T0371 186 :VATMIESILGRRFIRFGKPDSQMFMFAYDML 1aq6A 130 :LTDSFDAVISVDAKRVFKPHPDSYALVEEVL T0371 221 :EISKREILMVGDT 1aq6A 161 :GVTPAEVLFVSSN T0371 235 :HTDILGGNKFGLDTALVL 1aq6A 174 :GFDVGGAKNFGFSVARVA T0371 255 :NTRIDDAETK 1aq6A 192 :RLSQEALARE T0371 265 :IKSTGIV 1aq6A 219 :REETYAE T0371 272 :PTHICES 1aq6A 227 :PDFVVPA T0371 280 :VIEL 1aq6A 234 :LGDL Number of specific fragments extracted= 19 number of extra gaps= 0 total=2075 Number of alignments=145 # 1aq6A read from 1aq6A/merged-good-all-a2m # found chain 1aq6A in template set Warning: unaligning (T0371)K12 because first residue in template chain is (1aq6A)M1 T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENTF 1aq6A 2 :IKAVVFDAYGTLFDVQSVADATERAY T0371 56 :SRSPEQLADSYHK 1aq6A 28 :PGRGEYITQVWRQ T0371 84 :MITKEYIDLKVDG 1aq6A 41 :KQLEYSWLRALMG T0371 97 :GIVAYLGTANSANYLVSDGIKML 1aq6A 56 :ADFWGVTREALAYTLGTLGLEPD T0371 130 :GEVNALVLLDDEGFNWFHDLNKTVNLL 1aq6A 79 :ESFLADMAQAYNRLTPYPDAAQCLAEL T0371 159 :RTIPAIVANTDNTYPLTKTDVAIAIGGVATMI 1aq6A 106 :APLKRAILSNGAPDMLQALVANAGLTDSFDAV T0371 194 :LGRRFIRFGKPDSQMFMFAYDML 1aq6A 138 :ISVDAKRVFKPHPDSYALVEEVL T0371 221 :EISKREILMVGDTLH 1aq6A 161 :GVTPAEVLFVSSNGF T0371 237 :DILGGNKFGLDTALVLT 1aq6A 176 :DVGGAKNFGFSVARVAR T0371 256 :TRIDDAETKI 1aq6A 193 :LSQEALAREL T0371 266 :KSTGIVPTHICES 1aq6A 221 :ETYAEAPDFVVPA T0371 280 :VIEL 1aq6A 234 :LGDL Number of specific fragments extracted= 12 number of extra gaps= 0 total=2087 Number of alignments=146 # 1aq6A read from 1aq6A/merged-good-all-a2m # found chain 1aq6A in template set T0371 13 :YKCIFFDAFGVLKTYNGLLPGIENT 1aq6A 2 :IKAVVFDAYGTLFDVQSVADATERA T0371 38 :FDYLKA 1aq6A 35 :TQVWRQ T0371 57 :RSPEQLADSYHKLGL 1aq6A 41 :KQLEYSWLRALMGRY T0371 80 :ISSGMITKEY 1aq6A 56 :ADFWGVTREA T0371 107 :SANYLVSDGIK 1aq6A 66 :LAYTLGTLGLE T0371 128 :NIGEVNALVLLDDEGFNWFHDLNKTVNLL 1aq6A 77 :PDESFLADMAQAYNRLTPYPDAAQCLAEL T0371 159 :RTIPAIVANTD 1aq6A 106 :APLKRAILSNG T0371 182 :AIGGVATMIESIL 1aq6A 117 :APDMLQALVANAG T0371 198 :FIRFGKPDSQMFMFAYDML 1aq6A 142 :AKRVFKPHPDSYALVEEVL T0371 221 :EISKREILMVGDTLH 1aq6A 161 :GVTPAEVLFVSSNGF T0371 237 :DILGGNKFGLDTALVLT 1aq6A 176 :DVGGAKNFGFSVARVAR T0371 256 :TRIDDAE 1aq6A 193 :LSQEALA T0371 263 :TKIKSTGIVPTHICESAV 1aq6A 222 :TYAEAPDFVVPALGDLPR Number of specific fragments extracted= 13 number of extra gaps= 0 total=2100 Number of alignments=147 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0371//projects/compbio/experiments/protein-predict/casp7/T0371/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0371//projects/compbio/experiments/protein-predict/casp7/T0371/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0371/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0371/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0371)V23.CB, (T0371)D232.CB) [> 3.0139 = 5.0232 < 6.5302] w=1.0000 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)D232.CB) [> 2.9070 = 4.8450 < 6.2985] w=1.0000 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)V230.CB) [> 4.2229 = 7.0381 < 9.1496] w=1.0000 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)M229.CB) [> 2.9324 = 4.8873 < 6.3535] w=1.0000 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)L228.CB) [> 4.2242 = 7.0403 < 9.1524] w=1.0000 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)I227.CB) [> 3.7401 = 6.2335 < 8.1036] w=1.0000 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)L228.CB) [> 2.9115 = 4.8524 < 6.3082] w=1.0000 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)L228.CB) [> 4.2972 = 7.1620 < 9.3106] w=1.0000 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)I227.CB) [> 2.7868 = 4.6446 < 6.0380] w=1.0000 to align # Constraint # added constraint: constraint((T0371)V23.CB, (T0371)G231.CA) [> 2.8387 = 4.7311 < 6.1505] w=0.9786 to align # Constraint # added constraint: constraint((T0371)V23.CB, (T0371)V230.CB) [> 3.4382 = 5.7303 < 7.4494] w=0.9786 to align # Constraint # added constraint: constraint((T0371)M229.CB, (T0371)T248.CB) [> 3.3118 = 5.5196 < 7.1755] w=0.9785 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)V230.CB) [> 4.0164 = 6.6940 < 8.7022] w=0.9716 to align # Constraint # added constraint: constraint((T0371)M229.CB, (T0371)G241.CA) [> 3.0248 = 5.0414 < 6.5538] w=0.9712 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)E226.CB) [> 3.8198 = 6.3664 < 8.2763] w=0.9643 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)I227.CB) [> 4.4324 = 7.3874 < 9.6036] w=0.9572 to align # Constraint # added constraint: constraint((T0371)F209.CB, (T0371)G240.CA) [> 3.6855 = 6.1424 < 7.9852] w=0.9429 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)L216.CB) [> 3.5324 = 5.8873 < 7.6535] w=0.9215 to align # Constraint # added constraint: constraint((T0371)K14.CB, (T0371)E226.CB) [> 2.7390 = 4.5649 < 5.9344] w=0.9146 to align # Constraint # added constraint: constraint((T0371)L228.CB, (T0371)T248.CB) [> 4.2417 = 7.0696 < 9.1904] w=0.9049 to align # Constraint # added constraint: constraint((T0371)I227.CB, (T0371)L246.CB) [> 3.0928 = 5.1546 < 6.7010] w=0.8948 to align # Constraint # added constraint: constraint((T0371)G231.CA, (T0371)A249.CB) [> 4.1494 = 6.9156 < 8.9903] w=0.8929 to align # Constraint # added constraint: constraint((T0371)M229.CB, (T0371)L246.CB) [> 3.1800 = 5.3000 < 6.8900] w=0.8876 to align # Constraint # added constraint: constraint((T0371)L228.CB, (T0371)L246.CB) [> 3.7765 = 6.2942 < 8.1825] w=0.8876 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)I222.CB) [> 2.9504 = 4.9173 < 6.3925] w=0.8858 to align # Constraint # added constraint: constraint((T0371)Y213.CB, (T0371)I227.CB) [> 3.8009 = 6.3348 < 8.2353] w=0.8856 to align # Constraint # added constraint: constraint((T0371)G231.CA, (T0371)L250.CB) [> 3.7363 = 6.2271 < 8.0953] w=0.8642 to align # Constraint # added constraint: constraint((T0371)L228.CB, (T0371)D247.CB) [> 3.0017 = 5.0029 < 6.5037] w=0.8570 to align # Constraint # added constraint: constraint((T0371)M229.CB, (T0371)A249.CB) [> 4.1018 = 6.8363 < 8.8872] w=0.8541 to align # Constraint # added constraint: constraint((T0371)K14.CB, (T0371)I227.CB) [> 4.4129 = 7.3549 < 9.5614] w=0.8503 to align # Constraint # added constraint: constraint((T0371)V230.CB, (T0371)A249.CB) [> 3.0750 = 5.1250 < 6.6625] w=0.8399 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)D232.CB) [> 3.8012 = 6.3353 < 8.2359] w=0.8288 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)G231.CA) [> 2.4167 = 4.0278 < 5.2361] w=0.8288 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)V230.CB) [> 3.8117 = 6.3528 < 8.2586] w=0.8288 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)G231.CA) [> 4.2761 = 7.1269 < 9.2649] w=0.8288 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)V230.CB) [> 2.9208 = 4.8681 < 6.3285] w=0.8288 to align # Constraint # added constraint: constraint((T0371)L228.CB, (T0371)A249.CB) [> 3.7513 = 6.2522 < 8.1279] w=0.8256 to align # Constraint # added constraint: constraint((T0371)M229.CB, (T0371)D247.CB) [> 4.0375 = 6.7292 < 8.7480] w=0.8215 to align # Constraint # added constraint: constraint((T0371)K224.CB, (T0371)G245.CA) [> 3.0245 = 5.0408 < 6.5530] w=0.8215 to align # Constraint # added constraint: constraint((T0371)G231.CA, (T0371)V251.CB) [> 3.4086 = 5.6811 < 7.3854] w=0.8113 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)D237.CB) [> 3.4316 = 5.7193 < 7.4350] w=0.8003 to align # Constraint # added constraint: constraint((T0371)I227.CB, (T0371)D247.CB) [> 4.0531 = 6.7552 < 8.7818] w=0.7969 to align # Constraint # added constraint: constraint((T0371)D232.CB, (T0371)V251.CB) [> 3.0079 = 5.0131 < 6.5170] w=0.7899 to align # Constraint # added constraint: constraint((T0371)K14.CB, (T0371)I222.CB) [> 3.3148 = 5.5247 < 7.1821] w=0.7860 to align # Constraint # added constraint: constraint((T0371)Y213.CB, (T0371)K224.CB) [> 3.6666 = 6.1109 < 7.9442] w=0.7787 to align # Constraint # added constraint: constraint((T0371)K224.CB, (T0371)F244.CB) [> 3.4284 = 5.7141 < 7.4283] w=0.7786 to align # Constraint # added constraint: constraint((T0371)F209.CB, (T0371)M229.CB) [> 4.2715 = 7.1191 < 9.2548] w=0.7718 to align # Constraint # added constraint: constraint((T0371)D232.CB, (T0371)L250.CB) [> 4.1406 = 6.9011 < 8.9714] w=0.7716 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)A212.CB) [> 3.5991 = 5.9985 < 7.7981] w=0.7715 to align # Constraint # added constraint: constraint((T0371)V230.CB, (T0371)V251.CB) [> 3.8202 = 6.3670 < 8.2771] w=0.7613 to align # Constraint # added constraint: constraint((T0371)Y13.CB, (T0371)E226.CB) [> 3.6028 = 6.0047 < 7.8060] w=0.7596 to align # Constraint # added constraint: constraint((T0371)F209.CB, (T0371)F244.CB) [> 2.8667 = 4.7779 < 6.2113] w=0.7451 to align # Constraint # added constraint: constraint((T0371)S206.CB, (T0371)G240.CA) [> 3.2617 = 5.4362 < 7.0670] w=0.7308 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)G231.CA) [> 4.5629 = 7.6048 < 9.8863] w=0.7278 to align # Constraint # added constraint: constraint((T0371)R225.CB, (T0371)G245.CA) [> 3.8102 = 6.3504 < 8.2555] w=0.7215 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)T233.CB) [> 4.3577 = 7.2629 < 9.4418] w=0.7210 to align # Constraint # added constraint: constraint((T0371)Y13.CB, (T0371)L228.CB) [> 3.0431 = 5.0719 < 6.5935] w=0.7066 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)M229.CB) [> 4.6671 = 7.7785 < 10.1120] w=0.7066 to align # Constraint # added constraint: constraint((T0371)A249.CB, (T0371)P272.CB) [> 3.6801 = 6.1336 < 7.9736] w=0.7005 to align # Constraint # added constraint: constraint((T0371)M229.CB, (T0371)G240.CA) [> 3.6671 = 6.1118 < 7.9453] w=0.7002 to align # Constraint # added constraint: constraint((T0371)V23.CB, (T0371)V251.CB) [> 3.2469 = 5.4116 < 7.0350] w=0.6973 to align # Constraint # added constraint: constraint((T0371)F209.CB, (T0371)G241.CA) [> 3.5734 = 5.9557 < 7.7424] w=0.6930 to align # Constraint # added constraint: constraint((T0371)Y13.CB, (T0371)I227.CB) [> 4.1463 = 6.9106 < 8.9837] w=0.6852 to align # Constraint # added constraint: constraint((T0371)K203.CB, (T0371)D237.CB) [> 3.5831 = 5.9719 < 7.7634] w=0.6757 to align # Constraint # added constraint: constraint((T0371)V153.CB, (T0371)A163.CB) [> 3.5991 = 5.9985 < 7.7981] w=0.6715 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)F209.CB) [> 3.8173 = 6.3621 < 8.2707] w=0.6504 to align # Constraint # added constraint: constraint((T0371)L250.CB, (T0371)P272.CB) [> 3.0726 = 5.1209 < 6.6572] w=0.6455 to align # Constraint # added constraint: constraint((T0371)G231.CA, (T0371)T248.CB) [> 4.4686 = 7.4477 < 9.6820] w=0.6452 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)I161.CB) [> 3.8798 = 6.4664 < 8.4063] w=0.6359 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)P162.CB) [> 2.6985 = 4.4976 < 5.8468] w=0.6359 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)L156.CB) [> 3.5183 = 5.8638 < 7.6230] w=0.6359 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)I161.CB) [> 3.4095 = 5.6826 < 7.3874] w=0.6359 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)A163.CB) [> 3.3986 = 5.6644 < 7.3636] w=0.6359 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)I164.CB) [> 3.0705 = 5.1175 < 6.6528] w=0.6359 to align # Constraint # added constraint: constraint((T0371)L24.CB, (T0371)L149.CB) [> 3.2325 = 5.3875 < 7.0037] w=0.6359 to align # Constraint # added constraint: constraint((T0371)P204.CB, (T0371)G240.CA) [> 3.0789 = 5.1315 < 6.6710] w=0.6350 to align # Constraint # added constraint: constraint((T0371)P204.CB, (T0371)L239.CB) [> 3.0692 = 5.1153 < 6.6499] w=0.6278 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)D232.CB) [> 4.6055 = 7.6758 < 9.9785] w=0.6207 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)V165.CB) [> 3.9388 = 6.5647 < 8.5341] w=0.6145 to align # Constraint # added constraint: constraint((T0371)L24.CB, (T0371)W145.CB) [> 3.8135 = 6.3558 < 8.2625] w=0.6145 to align # Constraint # added constraint: constraint((T0371)K25.CB, (T0371)W145.CB) [> 3.6007 = 6.0012 < 7.8015] w=0.6145 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)P162.CB) [> 4.3417 = 7.2362 < 9.4071] w=0.6145 to align # Constraint # added constraint: constraint((T0371)I238.CB, (T0371)T248.CB) [> 2.9190 = 4.8651 < 6.3246] w=0.6137 to align # Constraint # added constraint: constraint((T0371)M210.CB, (T0371)F244.CB) [> 3.8356 = 6.3927 < 8.3105] w=0.6065 to align # Constraint # added constraint: constraint((T0371)Y213.CB, (T0371)S223.CB) [> 4.0870 = 6.8116 < 8.8551] w=0.6022 to align # Constraint # added constraint: constraint((T0371)K14.CB, (T0371)I161.CB) [> 3.8050 = 6.3417 < 8.2442] w=0.6004 to align # Constraint # added constraint: constraint((T0371)K203.CB, (T0371)G240.CA) [> 3.5815 = 5.9692 < 7.7600] w=0.5975 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)A163.CB) [> 4.4316 = 7.3860 < 9.6018] w=0.5930 to align # Constraint # added constraint: constraint((T0371)K25.CB, (T0371)F146.CB) [> 3.9820 = 6.6367 < 8.6277] w=0.5930 to align # Constraint # added constraint: constraint((T0371)L24.CB, (T0371)F146.CB) [> 3.8000 = 6.3333 < 8.2333] w=0.5930 to align # Constraint # added constraint: constraint((T0371)K25.CB, (T0371)N144.CB) [> 4.0228 = 6.7047 < 8.7161] w=0.5892 to align # Constraint # added constraint: constraint((T0371)K25.CB, (T0371)F143.CB) [> 3.1669 = 5.2782 < 6.8616] w=0.5892 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)L246.CB) [> 4.4408 = 7.4013 < 9.6216] w=0.5853 to align # Constraint # added constraint: constraint((T0371)D232.CB, (T0371)L252.CB) [> 3.9798 = 6.6329 < 8.6228] w=0.5842 to align # Constraint # added constraint: constraint((T0371)I238.CB, (T0371)L250.CB) [> 3.4320 = 5.7200 < 7.4359] w=0.5780 to align # Constraint # added constraint: constraint((T0371)K14.CB, (T0371)P162.CB) [> 3.8211 = 6.3685 < 8.2791] w=0.5718 to align # Constraint # added constraint: constraint((T0371)M229.CB, (T0371)F244.CB) [> 3.3430 = 5.5717 < 7.2432] w=0.5716 to align # Constraint # added constraint: constraint((T0371)Y13.CB, (T0371)D247.CB) [> 4.0510 = 6.7517 < 8.7772] w=0.5638 to align # Constraint # added constraint: constraint((T0371)I227.CB, (T0371)F244.CB) [> 3.7386 = 6.2310 < 8.1003] w=0.5576 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)Y213.CB) [> 4.1374 = 6.8956 < 8.9643] w=0.5505 to align # Constraint # added constraint: constraint((T0371)T26.CB, (T0371)F146.CB) [> 3.5085 = 5.8476 < 7.6018] w=0.5502 to align # Constraint # added constraint: constraint((T0371)V251.CB, (T0371)I275.CB) [> 4.1945 = 6.9908 < 9.0880] w=0.5496 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)N167.CB) [> 4.1925 = 6.9875 < 9.0838] w=0.5495 to align # Constraint # added constraint: constraint((T0371)A249.CB, (T0371)H274.CB) [> 3.0159 = 5.0265 < 6.5345] w=0.5383 to align # Constraint # added constraint: constraint((T0371)T248.CB, (T0371)T273.CB) [> 3.2458 = 5.4097 < 7.0326] w=0.5312 to align # Constraint # added constraint: constraint((T0371)L250.CB, (T0371)I275.CB) [> 3.0688 = 5.1147 < 6.6491] w=0.5312 to align # Constraint # added constraint: constraint((T0371)D232.CB, (T0371)T256.CB) [> 3.4029 = 5.6715 < 7.3729] w=0.5291 to align # Constraint # added constraint: constraint((T0371)P162.CB, (T0371)L216.CB) [> 3.3483 = 5.5805 < 7.2546] w=0.5288 to align # Constraint # added constraint: constraint((T0371)L250.CB, (T0371)C276.CB) [> 4.1787 = 6.9645 < 9.0539] w=0.5241 to align # Constraint # added constraint: constraint((T0371)L250.CB, (T0371)H274.CB) [> 4.0389 = 6.7314 < 8.7509] w=0.5047 to align # Constraint # added constraint: constraint((T0371)V230.CB, (T0371)T248.CB) [> 4.1939 = 6.9898 < 9.0867] w=0.5026 to align # Constraint # added constraint: constraint((T0371)Y213.CB, (T0371)F244.CB) [> 4.2056 = 7.0093 < 9.1121] w=0.5022 to align # Constraint # added constraint: constraint((T0371)T168.CB, (T0371)G202.CA) [> 3.8613 = 6.4355 < 8.3661] w=0.5018 to align # Constraint # added constraint: constraint((T0371)T248.CB, (T0371)H274.CB) [> 4.1375 = 6.8959 < 8.9646] w=0.4955 to align # Constraint # added constraint: constraint((T0371)Y13.CB, (T0371)I161.CB) [> 4.1788 = 6.9647 < 9.0541] w=0.4954 to align # Constraint # added constraint: constraint((T0371)M229.CB, (T0371)I238.CB) [> 4.4959 = 7.4931 < 9.7411] w=0.4924 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)V251.CB) [> 4.2827 = 7.1379 < 9.2792] w=0.4923 to align # Constraint # added constraint: constraint((T0371)A249.CB, (T0371)T273.CB) [> 3.9764 = 6.6274 < 8.6156] w=0.4904 to align # Constraint # added constraint: constraint((T0371)V251.CB, (T0371)C276.CB) [> 3.5457 = 5.9094 < 7.6823] w=0.4904 to align # Constraint # added constraint: constraint((T0371)D205.CB, (T0371)G240.CA) [> 4.1227 = 6.8712 < 8.9325] w=0.4904 to align # Constraint # added constraint: constraint((T0371)D232.CB, (T0371)G254.CA) [> 3.6250 = 6.0417 < 7.8542] w=0.4895 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)A166.CB) [> 3.9070 = 6.5117 < 8.4652] w=0.4861 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)V165.CB) [> 3.4739 = 5.7899 < 7.5268] w=0.4861 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)I164.CB) [> 4.0035 = 6.6724 < 8.6742] w=0.4861 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)I164.CB) [> 4.3323 = 7.2204 < 9.3866] w=0.4833 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)I164.CB) [> 3.8437 = 6.4062 < 8.3281] w=0.4833 to align # Constraint # added constraint: constraint((T0371)A249.CB, (T0371)C276.CB) [> 3.7984 = 6.3306 < 8.2298] w=0.4812 to align # Constraint # added constraint: constraint((T0371)T248.CB, (T0371)P272.CB) [> 3.0823 = 5.1371 < 6.6782] w=0.4793 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)A163.CB) [> 4.2839 = 7.1399 < 9.2818] w=0.4770 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)T233.CB) [> 4.4831 = 7.4718 < 9.7134] w=0.4712 to align # Constraint # added constraint: constraint((T0371)F209.CB, (T0371)K243.CB) [> 4.2097 = 7.0161 < 9.1209] w=0.4669 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)A212.CB) [> 3.3514 = 5.5856 < 7.2613] w=0.4640 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)N167.CB) [> 2.6221 = 4.3702 < 5.6813] w=0.4621 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)A166.CB) [> 3.1938 = 5.3231 < 6.9200] w=0.4619 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)V165.CB) [> 3.6655 = 6.1091 < 7.9419] w=0.4600 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)A212.CB) [> 4.4405 = 7.4009 < 9.6212] w=0.4599 to align # Constraint # added constraint: constraint((T0371)A249.CB, (T0371)I275.CB) [> 4.2166 = 7.0276 < 9.1359] w=0.4598 to align # Constraint # added constraint: constraint((T0371)F209.CB, (T0371)I227.CB) [> 4.2804 = 7.1341 < 9.2743] w=0.4597 to align # Constraint # added constraint: constraint((T0371)P204.CB, (T0371)H235.CB) [> 3.7008 = 6.1681 < 8.0185] w=0.4583 to align # Constraint # added constraint: constraint((T0371)R225.CB, (T0371)D247.CB) [> 4.2323 = 7.0539 < 9.1701] w=0.4567 to align # Constraint # added constraint: constraint((T0371)P162.CB, (T0371)I222.CB) [> 4.0232 = 6.7053 < 8.7169] w=0.4503 to align # Constraint # added constraint: constraint((T0371)A108.CB, (T0371)M118.CB) [> 3.9234 = 6.5391 < 8.5008] w=0.4503 to align # Constraint # added constraint: constraint((T0371)A166.CB, (T0371)A212.CB) [> 3.4452 = 5.7420 < 7.4646] w=0.4496 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)A163.CB) [> 4.5375 = 7.5626 < 9.8313] w=0.4361 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)M229.CB) [> 4.5681 = 7.6135 < 9.8975] w=0.4355 to align # Constraint # added constraint: constraint((T0371)A166.CB, (T0371)M208.CB) [> 3.4483 = 5.7472 < 7.4714] w=0.4354 to align # Constraint # added constraint: constraint((T0371)T168.CB, (T0371)K203.CB) [> 3.6124 = 6.0207 < 7.8269] w=0.4354 to align # Constraint # added constraint: constraint((T0371)P204.CB, (T0371)K243.CB) [> 3.9596 = 6.5993 < 8.5791] w=0.4284 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)L216.CB) [> 3.6409 = 6.0682 < 7.8886] w=0.4282 to align # Constraint # added constraint: constraint((T0371)D247.CB, (T0371)T273.CB) [> 3.3139 = 5.5232 < 7.1801] w=0.4242 to align # Constraint # added constraint: constraint((T0371)I227.CB, (T0371)G245.CA) [> 3.8959 = 6.4932 < 8.4412] w=0.4218 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)F146.CB) [> 4.2951 = 7.1586 < 9.3061] w=0.4217 to align # Constraint # added constraint: constraint((T0371)P204.CB, (T0371)D237.CB) [> 4.0759 = 6.7931 < 8.8310] w=0.4210 to align # Constraint # added constraint: constraint((T0371)I199.CB, (T0371)M208.CB) [> 3.4309 = 5.7182 < 7.4337] w=0.4208 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)R196.CB) [> 3.9248 = 6.5413 < 8.5037] w=0.4161 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)V165.CB) [> 4.3373 = 7.2288 < 9.3974] w=0.4147 to align # Constraint # added constraint: constraint((T0371)L252.CB, (T0371)I275.CB) [> 3.8669 = 6.4448 < 8.3782] w=0.4141 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)M229.CB) [> 4.5674 = 7.6123 < 9.8960] w=0.4140 to align # Constraint # added constraint: constraint((T0371)D232.CB, (T0371)T253.CB) [> 3.6876 = 6.1460 < 7.9898] w=0.4067 to align # Constraint # added constraint: constraint((T0371)I199.CB, (T0371)F211.CB) [> 3.7854 = 6.3090 < 8.2017] w=0.4064 to align # Constraint # added constraint: constraint((T0371)R225.CB, (T0371)L246.CB) [> 4.3402 = 7.2336 < 9.4037] w=0.3994 to align # Constraint # added constraint: constraint((T0371)V230.CB, (T0371)L250.CB) [> 4.0540 = 6.7566 < 8.7836] w=0.3954 to align # Constraint # added constraint: constraint((T0371)L252.CB, (T0371)C276.CB) [> 4.1111 = 6.8519 < 8.9074] w=0.3927 to align # Constraint # added constraint: constraint((T0371)T168.CB, (T0371)R196.CB) [> 3.3984 = 5.6641 < 7.3633] w=0.3875 to align # Constraint # added constraint: constraint((T0371)L252.CB, (T0371)E277.CB) [> 3.5432 = 5.9053 < 7.6769] w=0.3855 to align # Constraint # added constraint: constraint((T0371)V251.CB, (T0371)E277.CB) [> 4.5065 = 7.5108 < 9.7640] w=0.3854 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)G195.CA) [> 3.4984 = 5.8307 < 7.5799] w=0.3806 to align # Constraint # added constraint: constraint((T0371)L216.CB, (T0371)I227.CB) [> 4.0868 = 6.8113 < 8.8547] w=0.3781 to align # Constraint # added constraint: constraint((T0371)K203.CB, (T0371)T236.CB) [> 3.2996 = 5.4994 < 7.1492] w=0.3763 to align # Constraint # added constraint: constraint((T0371)Y27.CB, (T0371)F143.CB) [> 3.3931 = 5.6551 < 7.3517] w=0.3761 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)Y48.CB) [> 3.1443 = 5.2405 < 6.8126] w=0.3711 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)V51.CB) [> 3.1383 = 5.2304 < 6.7996] w=0.3711 to align # Constraint # added constraint: constraint((T0371)A166.CB, (T0371)F209.CB) [> 3.6781 = 6.1301 < 7.9691] w=0.3678 to align # Constraint # added constraint: constraint((T0371)A166.CB, (T0371)G195.CA) [> 3.8349 = 6.3914 < 8.3089] w=0.3663 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)N255.CB) [> 3.8635 = 6.4392 < 8.3710] w=0.3641 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)Y49.CB) [> 2.9494 = 4.9157 < 6.3905] w=0.3640 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)D47.CB) [> 4.2389 = 7.0648 < 9.1842] w=0.3640 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)Q46.CB) [> 3.6901 = 6.1502 < 7.9953] w=0.3640 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)D47.CB) [> 2.6904 = 4.4841 < 5.8293] w=0.3640 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)Q46.CB) [> 4.1685 = 6.9476 < 9.0318] w=0.3640 to align # Constraint # added constraint: constraint((T0371)L250.CB, (T0371)A261.CB) [> 3.7560 = 6.2600 < 8.1380] w=0.3628 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)L194.CB) [> 3.6323 = 6.0538 < 7.8699] w=0.3609 to align # Constraint # added constraint: constraint((T0371)V23.CB, (T0371)V280.CB) [> 4.1609 = 6.9348 < 9.0153] w=0.3598 to align # Constraint # added constraint: constraint((T0371)R196.CB, (T0371)M208.CB) [> 3.6592 = 6.0986 < 7.9282] w=0.3590 to align # Constraint # added constraint: constraint((T0371)K14.CB, (T0371)D47.CB) [> 3.9727 = 6.6212 < 8.6076] w=0.3498 to align # Constraint # added constraint: constraint((T0371)K14.CB, (T0371)Q46.CB) [> 3.5743 = 5.9572 < 7.7444] w=0.3498 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)T52.CB) [> 3.9657 = 6.6095 < 8.5924] w=0.3497 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)I50.CB) [> 3.5944 = 5.9906 < 7.7878] w=0.3497 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)Y49.CB) [> 4.3022 = 7.1704 < 9.3215] w=0.3497 to align # Constraint # added constraint: constraint((T0371)F38.CB, (T0371)Y48.CB) [> 3.6932 = 6.1554 < 8.0020] w=0.3496 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)I190.CB) [> 3.4089 = 5.6816 < 7.3861] w=0.3490 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)L194.CB) [> 3.9741 = 6.6235 < 8.6106] w=0.3488 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)N167.CB) [> 3.8400 = 6.4001 < 8.3201] w=0.3486 to align # Constraint # added constraint: constraint((T0371)D237.CB, (T0371)T248.CB) [> 4.3610 = 7.2683 < 9.4488] w=0.3428 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)L216.CB) [> 4.3965 = 7.3276 < 9.5258] w=0.3427 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)V51.CB) [> 4.1459 = 6.9098 < 8.9827] w=0.3427 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)L41.CB) [> 3.9005 = 6.5008 < 8.4510] w=0.3426 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)T52.CB) [> 4.0660 = 6.7767 < 8.8097] w=0.3426 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)Y49.CB) [> 4.4375 = 7.3959 < 9.6146] w=0.3426 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)V51.CB) [> 3.5438 = 5.9062 < 7.6781] w=0.3426 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)I190.CB) [> 3.8930 = 6.4884 < 8.4349] w=0.3420 to align # Constraint # added constraint: constraint((T0371)L62.CB, (T0371)I79.CB) [> 3.1611 = 5.2686 < 6.8491] w=0.3413 to align # Constraint # added constraint: constraint((T0371)V251.CB, (T0371)V280.CB) [> 3.8157 = 6.3595 < 8.2673] w=0.3405 to align # Constraint # added constraint: constraint((T0371)T26.CB, (T0371)W145.CB) [> 4.3755 = 7.2925 < 9.4803] w=0.3395 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)T52.CB) [> 2.6476 = 4.4126 < 5.7364] w=0.3283 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)Y49.CB) [> 3.9721 = 6.6201 < 8.6062] w=0.3283 to align # Constraint # added constraint: constraint((T0371)D247.CB, (T0371)H274.CB) [> 4.4548 = 7.4247 < 9.6521] w=0.3243 to align # Constraint # added constraint: constraint((T0371)L149.CB, (T0371)V280.CB) [> 3.3280 = 5.5466 < 7.2106] w=0.3242 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)T168.CB) [> 4.2828 = 7.1380 < 9.2794] w=0.3229 to align # Constraint # added constraint: constraint((T0371)V23.CB, (T0371)D237.CB) [> 4.6559 = 7.7599 < 10.0878] w=0.3213 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)I50.CB) [> 3.4608 = 5.7679 < 7.4983] w=0.3212 to align # Constraint # added constraint: constraint((T0371)Y213.CB, (T0371)L246.CB) [> 4.3548 = 7.2580 < 9.4354] w=0.3211 to align # Constraint # added constraint: constraint((T0371)L194.CB, (T0371)A212.CB) [> 3.4005 = 5.6675 < 7.3678] w=0.3163 to align # Constraint # added constraint: constraint((T0371)T233.CB, (T0371)R257.CB) [> 4.1237 = 6.8728 < 8.9347] w=0.3150 to align # Constraint # added constraint: constraint((T0371)D237.CB, (T0371)L250.CB) [> 4.3245 = 7.2075 < 9.3698] w=0.3141 to align # Constraint # added constraint: constraint((T0371)L24.CB, (T0371)V165.CB) [> 4.1943 = 6.9906 < 9.0878] w=0.3121 to align # Constraint # added constraint: constraint((T0371)A249.CB, (T0371)L283.CB) [> 4.0305 = 6.7175 < 8.7327] w=0.3120 to align # Constraint # added constraint: constraint((T0371)T152.CB, (T0371)V280.CB) [> 2.8322 = 4.7204 < 6.1365] w=0.3100 to align # Constraint # added constraint: constraint((T0371)D232.CB, (T0371)R257.CB) [> 3.3155 = 5.5258 < 7.1835] w=0.3079 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)A212.CB) [> 3.7360 = 6.2266 < 8.0946] w=0.3044 to align # Constraint # added constraint: constraint((T0371)V230.CB, (T0371)L283.CB) [> 3.9849 = 6.6414 < 8.6339] w=0.3028 to align # Constraint # added constraint: constraint((T0371)A166.CB, (T0371)L194.CB) [> 3.4524 = 5.7541 < 7.4803] w=0.3020 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)G240.CA) [> 4.3713 = 7.2856 < 9.4712] w=0.3007 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)A166.CB) [> 4.3923 = 7.3206 < 9.5168] w=0.2980 to align # Constraint # added constraint: constraint((T0371)L194.CB, (T0371)F211.CB) [> 3.5037 = 5.8396 < 7.5914] w=0.2949 to align # Constraint # added constraint: constraint((T0371)M210.CB, (T0371)K243.CB) [> 3.3807 = 5.6346 < 7.3250] w=0.2936 to align # Constraint # added constraint: constraint((T0371)F198.CB, (T0371)F211.CB) [> 3.8988 = 6.4981 < 8.4475] w=0.2926 to align # Constraint # added constraint: constraint((T0371)T248.CB, (T0371)I270.CB) [> 4.0272 = 6.7120 < 8.7256] w=0.2906 to align # Constraint # added constraint: constraint((T0371)V230.CB, (T0371)V280.CB) [> 4.4325 = 7.3875 < 9.6038] w=0.2886 to align # Constraint # added constraint: constraint((T0371)T152.CB, (T0371)L283.CB) [> 3.4932 = 5.8221 < 7.5687] w=0.2885 to align # Constraint # added constraint: constraint((T0371)I238.CB, (T0371)A261.CB) [> 3.7356 = 6.2261 < 8.0939] w=0.2884 to align # Constraint # added constraint: constraint((T0371)T233.CB, (T0371)A261.CB) [> 4.0076 = 6.6793 < 8.6832] w=0.2884 to align # Constraint # added constraint: constraint((T0371)T168.CB, (T0371)G195.CA) [> 4.0911 = 6.8184 < 8.8640] w=0.2878 to align # Constraint # added constraint: constraint((T0371)A166.CB, (T0371)M229.CB) [> 4.4028 = 7.3380 < 9.5395] w=0.2876 to align # Constraint # added constraint: constraint((T0371)I238.CB, (T0371)P272.CB) [> 3.1006 = 5.1677 < 6.7180] w=0.2856 to align # Constraint # added constraint: constraint((T0371)Y49.CB, (T0371)A212.CB) [> 3.7080 = 6.1800 < 8.0340] w=0.2856 to align # Constraint # added constraint: constraint((T0371)L24.CB, (T0371)I34.CB) [> 3.1649 = 5.2749 < 6.8573] w=0.2855 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)I50.CB) [> 4.6281 = 7.7136 < 10.0276] w=0.2855 to align # Constraint # added constraint: constraint((T0371)W145.CB, (T0371)I181.CB) [> 3.3851 = 5.6419 < 7.3344] w=0.2841 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)A166.CB) [> 3.4891 = 5.8151 < 7.5597] w=0.2840 to align # Constraint # added constraint: constraint((T0371)A63.CB, (T0371)A76.CB) [> 3.7254 = 6.2090 < 8.0717] w=0.2835 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)T256.CB) [> 3.9796 = 6.6327 < 8.6225] w=0.2793 to align # Constraint # added constraint: constraint((T0371)A166.CB, (T0371)K203.CB) [> 4.3284 = 7.2140 < 9.3782] w=0.2785 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)Y48.CB) [> 4.0273 = 6.7121 < 8.7258] w=0.2785 to align # Constraint # added constraint: constraint((T0371)P59.CB, (T0371)I79.CB) [> 3.1439 = 5.2398 < 6.8117] w=0.2784 to align # Constraint # added constraint: constraint((T0371)L24.CB, (T0371)I50.CB) [> 4.2651 = 7.1086 < 9.2411] w=0.2783 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)D169.CB) [> 3.7802 = 6.3004 < 8.1905] w=0.2743 to align # Constraint # added constraint: constraint((T0371)L24.CB, (T0371)V280.CB) [> 4.4010 = 7.3350 < 9.5355] w=0.2743 to align # Constraint # added constraint: constraint((T0371)Y66.CB, (T0371)S107.CB) [> 3.9079 = 6.5131 < 8.4671] w=0.2720 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)G254.CA) [> 3.0762 = 5.1270 < 6.6651] w=0.2713 to align # Constraint # added constraint: constraint((T0371)V51.CB, (T0371)F209.CB) [> 3.6754 = 6.1257 < 7.9634] w=0.2713 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)Y48.CB) [> 4.4992 = 7.4987 < 9.7483] w=0.2712 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)T233.CB) [> 4.5676 = 7.6127 < 9.8966] w=0.2698 to align # Constraint # added constraint: constraint((T0371)I238.CB, (T0371)K264.CB) [> 3.5997 = 5.9995 < 7.7993] w=0.2692 to align # Constraint # added constraint: constraint((T0371)F143.CB, (T0371)T177.CB) [> 3.5505 = 5.9174 < 7.6927] w=0.2692 to align # Constraint # added constraint: constraint((T0371)V153.CB, (T0371)V186.CB) [> 3.3908 = 5.6513 < 7.3466] w=0.2688 to align # Constraint # added constraint: constraint((T0371)T152.CB, (T0371)I281.CB) [> 3.6688 = 6.1147 < 7.9492] w=0.2672 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)K203.CB) [> 3.9918 = 6.6530 < 8.6489] w=0.2646 to align # Constraint # added constraint: constraint((T0371)D47.CB, (T0371)L216.CB) [> 3.8037 = 6.3395 < 8.2414] w=0.2642 to align # Constraint # added constraint: constraint((T0371)I50.CB, (T0371)I79.CB) [> 3.3887 = 5.6478 < 7.3422] w=0.2641 to align # Constraint # added constraint: constraint((T0371)Y49.CB, (T0371)I79.CB) [> 4.1212 = 6.8686 < 8.9292] w=0.2641 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)M215.CB) [> 4.1698 = 6.9497 < 9.0346] w=0.2640 to align # Constraint # added constraint: constraint((T0371)N150.CB, (T0371)V186.CB) [> 4.1451 = 6.9084 < 8.9810] w=0.2586 to align # Constraint # added constraint: constraint((T0371)D178.CB, (T0371)A187.CB) [> 3.5483 = 5.9138 < 7.6880] w=0.2576 to align # Constraint # added constraint: constraint((T0371)M229.CB, (T0371)K243.CB) [> 4.3438 = 7.2396 < 9.4115] w=0.2576 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)L174.CB) [> 3.8834 = 6.4723 < 8.4140] w=0.2550 to align # Constraint # added constraint: constraint((T0371)A249.CB, (T0371)I270.CB) [> 3.0978 = 5.1630 < 6.7119] w=0.2549 to align # Constraint # added constraint: constraint((T0371)K12.CB, (T0371)E226.CB) [> 3.7743 = 6.2906 < 8.1778] w=0.2529 to align # Constraint # added constraint: constraint((T0371)D169.CB, (T0371)G195.CA) [> 3.9188 = 6.5314 < 8.4908] w=0.2498 to align # Constraint # added constraint: constraint((T0371)G231.CA, (T0371)A261.CB) [> 4.0515 = 6.7526 < 8.7783] w=0.2457 to align # Constraint # added constraint: constraint((T0371)L234.CB, (T0371)A261.CB) [> 4.0069 = 6.6782 < 8.6817] w=0.2456 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)D169.CB) [> 4.0020 = 6.6700 < 8.6710] w=0.2456 to align # Constraint # added constraint: constraint((T0371)T253.CB, (T0371)E277.CB) [> 3.7740 = 6.2901 < 8.1771] w=0.2428 to align # Constraint # added constraint: constraint((T0371)T52.CB, (T0371)I79.CB) [> 4.5006 = 7.5010 < 9.7513] w=0.2428 to align # Constraint # added constraint: constraint((T0371)F143.CB, (T0371)I181.CB) [> 3.9014 = 6.5023 < 8.4530] w=0.2427 to align # Constraint # added constraint: constraint((T0371)T52.CB, (T0371)I80.CB) [> 4.1764 = 6.9606 < 9.0488] w=0.2426 to align # Constraint # added constraint: constraint((T0371)L228.CB, (T0371)G245.CA) [> 4.1542 = 6.9237 < 9.0008] w=0.2365 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)T253.CB) [> 3.5930 = 5.9883 < 7.7847] w=0.2356 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)I50.CB) [> 4.6694 = 7.7824 < 10.1171] w=0.2355 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)M208.CB) [> 4.5746 = 7.6243 < 9.9116] w=0.2354 to align # Constraint # added constraint: constraint((T0371)V23.CB, (T0371)L149.CB) [> 4.3253 = 7.2089 < 9.3716] w=0.2351 to align # Constraint # added constraint: constraint((T0371)T253.CB, (T0371)S278.CB) [> 3.5805 = 5.9675 < 7.7578] w=0.2285 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)D54.CB) [> 4.4432 = 7.4053 < 9.6269] w=0.2285 to align # Constraint # added constraint: constraint((T0371)P59.CB, (T0371)A76.CB) [> 3.5563 = 5.9272 < 7.7054] w=0.2284 to align # Constraint # added constraint: constraint((T0371)A249.CB, (T0371)V271.CB) [> 4.1695 = 6.9492 < 9.0340] w=0.2263 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)A187.CB) [> 3.2221 = 5.3702 < 6.9812] w=0.2260 to align # Constraint # added constraint: constraint((T0371)L194.CB, (T0371)M208.CB) [> 3.5510 = 5.9183 < 7.6937] w=0.2235 to align # Constraint # added constraint: constraint((T0371)A163.CB, (T0371)M189.CB) [> 4.0992 = 6.8320 < 8.8815] w=0.2228 to align # Constraint # added constraint: constraint((T0371)T233.CB, (T0371)I258.CB) [> 3.6008 = 6.0013 < 7.8017] w=0.2222 to align # Constraint # added constraint: constraint((T0371)I50.CB, (T0371)I74.CB) [> 4.0110 = 6.6850 < 8.6905] w=0.2214 to align # Constraint # added constraint: constraint((T0371)L174.CB, (T0371)G195.CA) [> 3.8567 = 6.4278 < 8.3561] w=0.2214 to align # Constraint # added constraint: constraint((T0371)K14.CB, (T0371)T160.CB) [> 4.3118 = 7.1863 < 9.3421] w=0.2213 to align # Constraint # added constraint: constraint((T0371)K25.CB, (T0371)I181.CB) [> 3.9524 = 6.5873 < 8.5635] w=0.2212 to align # Constraint # added constraint: constraint((T0371)L31.CB, (T0371)P59.CB) [> 3.6278 = 6.0464 < 7.8603] w=0.2199 to align # Constraint # added constraint: constraint((T0371)I238.CB, (T0371)I265.CB) [> 3.8207 = 6.3678 < 8.2782] w=0.2191 to align # Constraint # added constraint: constraint((T0371)F143.CB, (T0371)M189.CB) [> 3.6616 = 6.1026 < 7.9334] w=0.2171 to align # Constraint # added constraint: constraint((T0371)P59.CB, (T0371)I80.CB) [> 3.6186 = 6.0310 < 7.8403] w=0.2149 to align # Constraint # added constraint: constraint((T0371)G231.CA, (T0371)G241.CA) [> 4.4267 = 7.3778 < 9.5911] w=0.2142 to align # Constraint # added constraint: constraint((T0371)F38.CB, (T0371)L71.CB) [> 3.8937 = 6.4895 < 8.4364] w=0.2141 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)T177.CB) [> 4.0156 = 6.6926 < 8.7004] w=0.2121 to align # Constraint # added constraint: constraint((T0371)L234.CB, (T0371)L250.CB) [> 3.8440 = 6.4066 < 8.3286] w=0.2086 to align # Constraint # added constraint: constraint((T0371)D232.CB, (T0371)I258.CB) [> 4.0622 = 6.7703 < 8.8014] w=0.2079 to align # Constraint # added constraint: constraint((T0371)T104.CB, (T0371)V132.CB) [> 3.6021 = 6.0036 < 7.8046] w=0.2077 to align # Constraint # added constraint: constraint((T0371)V23.CB, (T0371)T253.CB) [> 3.8960 = 6.4932 < 8.4412] w=0.2071 to align # Constraint # added constraint: constraint((T0371)I50.CB, (T0371)Y66.CB) [> 3.9855 = 6.6424 < 8.6352] w=0.2068 to align # Constraint # added constraint: constraint((T0371)K203.CB, (T0371)T233.CB) [> 4.5750 = 7.6250 < 9.9125] w=0.2060 to align # Constraint # added constraint: constraint((T0371)D247.CB, (T0371)G269.CA) [> 3.7238 = 6.2063 < 8.0682] w=0.2050 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)M189.CB) [> 2.9652 = 4.9420 < 6.4246] w=0.2025 to align # Constraint # added constraint: constraint((T0371)Q207.CB, (T0371)L239.CB) [> 4.2633 = 7.1055 < 9.2372] w=0.2008 to align # Constraint # added constraint: constraint((T0371)P59.CB, (T0371)S81.CB) [> 3.4454 = 5.7423 < 7.4650] w=0.1999 to align # Constraint # added constraint: constraint((T0371)Y49.CB, (T0371)L216.CB) [> 3.8465 = 6.4108 < 8.3340] w=0.1999 to align # Constraint # added constraint: constraint((T0371)L252.CB, (T0371)S278.CB) [> 3.8433 = 6.4054 < 8.3271] w=0.1999 to align # Constraint # added constraint: constraint((T0371)V51.CB, (T0371)G240.CA) [> 4.5702 = 7.6170 < 9.9021] w=0.1999 to align # Constraint # added constraint: constraint((T0371)L250.CB, (T0371)I270.CB) [> 4.1240 = 6.8733 < 8.9353] w=0.1999 to align # Constraint # added constraint: constraint((T0371)V251.CB, (T0371)H274.CB) [> 3.9262 = 6.5437 < 8.5069] w=0.1999 to align # Constraint # added constraint: constraint((T0371)I50.CB, (T0371)I80.CB) [> 4.2001 = 7.0002 < 9.1003] w=0.1998 to align # Constraint # added constraint: constraint((T0371)W145.CB, (T0371)I193.CB) [> 3.5600 = 5.9334 < 7.7134] w=0.1992 to align # Constraint # added constraint: constraint((T0371)V23.CB, (T0371)I275.CB) [> 4.0639 = 6.7732 < 8.8051] w=0.1978 to align # Constraint # added constraint: constraint((T0371)M229.CB, (T0371)G245.CA) [> 4.5861 = 7.6436 < 9.9367] w=0.1936 to align # Constraint # added constraint: constraint((T0371)E226.CB, (T0371)G245.CA) [> 4.2998 = 7.1663 < 9.3162] w=0.1935 to align # Constraint # added constraint: constraint((T0371)S107.CB, (T0371)V136.CB) [> 3.9397 = 6.5661 < 8.5360] w=0.1928 to align # Constraint # added constraint: constraint((T0371)T253.CB, (T0371)T273.CB) [> 3.8624 = 6.4374 < 8.3686] w=0.1928 to align # Constraint # added constraint: constraint((T0371)L250.CB, (T0371)V271.CB) [> 2.8893 = 4.8154 < 6.2601] w=0.1927 to align # Constraint # added constraint: constraint((T0371)V51.CB, (T0371)I80.CB) [> 2.9980 = 4.9966 < 6.4956] w=0.1927 to align # Constraint # added constraint: constraint((T0371)T52.CB, (T0371)S81.CB) [> 3.5511 = 5.9184 < 7.6940] w=0.1927 to align # Constraint # added constraint: constraint((T0371)L30.CB, (T0371)F143.CB) [> 3.7818 = 6.3029 < 8.1938] w=0.1910 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)I193.CB) [> 3.6102 = 6.0170 < 7.8221] w=0.1882 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)V186.CB) [> 3.9377 = 6.5628 < 8.5316] w=0.1876 to align # Constraint # added constraint: constraint((T0371)A166.CB, (T0371)R196.CB) [> 4.3106 = 7.1843 < 9.3396] w=0.1872 to align # Constraint # added constraint: constraint((T0371)G33.CA, (T0371)D139.CB) [> 3.5043 = 5.8404 < 7.5926] w=0.1863 to align # Constraint # added constraint: constraint((T0371)T253.CB, (T0371)H274.CB) [> 3.6774 = 6.1289 < 7.9676] w=0.1856 to align # Constraint # added constraint: constraint((T0371)V251.CB, (T0371)T273.CB) [> 4.4387 = 7.3979 < 9.6172] w=0.1856 to align # Constraint # added constraint: constraint((T0371)D54.CB, (T0371)S81.CB) [> 4.1188 = 6.8646 < 8.9240] w=0.1855 to align # Constraint # added constraint: constraint((T0371)V51.CB, (T0371)I79.CB) [> 3.6031 = 6.0052 < 7.8068] w=0.1855 to align # Constraint # added constraint: constraint((T0371)Y66.CB, (T0371)I79.CB) [> 3.6413 = 6.0689 < 7.8895] w=0.1842 to align # Constraint # added constraint: constraint((T0371)D247.CB, (T0371)I270.CB) [> 4.3151 = 7.1918 < 9.3493] w=0.1835 to align # Constraint # added constraint: constraint((T0371)K25.CB, (T0371)I193.CB) [> 4.0547 = 6.7578 < 8.7852] w=0.1835 to align # Constraint # added constraint: constraint((T0371)F209.CB, (T0371)L239.CB) [> 3.7974 = 6.3290 < 8.2277] w=0.1833 to align # Constraint # added constraint: constraint((T0371)T26.CB, (T0371)G254.CA) [> 4.0675 = 6.7792 < 8.8130] w=0.1792 to align # Constraint # added constraint: constraint((T0371)L31.CB, (T0371)E60.CB) [> 4.1045 = 6.8408 < 8.8931] w=0.1792 to align # Constraint # added constraint: constraint((T0371)A55.CB, (T0371)S81.CB) [> 3.6414 = 6.0689 < 7.8896] w=0.1785 to align # Constraint # added constraint: constraint((T0371)F143.CB, (T0371)A180.CB) [> 3.5387 = 5.8978 < 7.6671] w=0.1785 to align # Constraint # added constraint: constraint((T0371)N53.CB, (T0371)S82.CB) [> 2.9135 = 4.8558 < 6.3125] w=0.1784 to align # Constraint # added constraint: constraint((T0371)Y49.CB, (T0371)I80.CB) [> 3.6222 = 6.0370 < 7.8481] w=0.1784 to align # Constraint # added constraint: constraint((T0371)F198.CB, (T0371)M208.CB) [> 4.0533 = 6.7556 < 8.7822] w=0.1764 to align # Constraint # added constraint: constraint((T0371)G241.CA, (T0371)K264.CB) [> 3.7798 = 6.2997 < 8.1896] w=0.1764 to align # Constraint # added constraint: constraint((T0371)D148.CB, (T0371)C276.CB) [> 2.9127 = 4.8546 < 6.3109] w=0.1764 to align # Constraint # added constraint: constraint((T0371)T168.CB, (T0371)M208.CB) [> 4.3643 = 7.2739 < 9.4561] w=0.1762 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)F143.CB) [> 4.2576 = 7.0960 < 9.2247] w=0.1734 to align # Constraint # added constraint: constraint((T0371)F146.CB, (T0371)G254.CA) [> 4.0756 = 6.7926 < 8.8304] w=0.1728 to align # Constraint # added constraint: constraint((T0371)G142.CA, (T0371)A180.CB) [> 3.7713 = 6.2855 < 8.1711] w=0.1720 to align # Constraint # added constraint: constraint((T0371)T233.CB, (T0371)N255.CB) [> 3.3737 = 5.6228 < 7.3097] w=0.1714 to align # Constraint # added constraint: constraint((T0371)L252.CB, (T0371)P272.CB) [> 4.2248 = 7.0413 < 9.1537] w=0.1714 to align # Constraint # added constraint: constraint((T0371)L156.CB, (T0371)L283.CB) [> 4.3580 = 7.2634 < 9.4424] w=0.1714 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)L283.CB) [> 4.3879 = 7.3133 < 9.5072] w=0.1714 to align # Constraint # added constraint: constraint((T0371)T171.CB, (T0371)R197.CB) [> 3.3483 = 5.5805 < 7.2546] w=0.1714 to align # Constraint # added constraint: constraint((T0371)Y13.CB, (T0371)Q46.CB) [> 4.0646 = 6.7743 < 8.8066] w=0.1713 to align # Constraint # added constraint: constraint((T0371)I50.CB, (T0371)K78.CB) [> 3.4997 = 5.8329 < 7.5828] w=0.1712 to align # Constraint # added constraint: constraint((T0371)L24.CB, (T0371)V153.CB) [> 4.6111 = 7.6851 < 9.9907] w=0.1711 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)T168.CB) [> 4.1210 = 6.8683 < 8.9288] w=0.1700 to align # Constraint # added constraint: constraint((T0371)S65.CB, (T0371)Y110.CB) [> 3.0515 = 5.0859 < 6.6116] w=0.1693 to align # Constraint # added constraint: constraint((T0371)T37.CB, (T0371)L135.CB) [> 3.6098 = 6.0163 < 7.8212] w=0.1692 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)S192.CB) [> 3.6390 = 6.0650 < 7.8845] w=0.1661 to align # Constraint # added constraint: constraint((T0371)A163.CB, (T0371)E191.CB) [> 3.6111 = 6.0185 < 7.8241] w=0.1661 to align # Constraint # added constraint: constraint((T0371)L252.CB, (T0371)V271.CB) [> 3.6850 = 6.1416 < 7.9841] w=0.1642 to align # Constraint # added constraint: constraint((T0371)I85.CB, (T0371)G202.CA) [> 4.0394 = 6.7324 < 8.7521] w=0.1642 to align # Constraint # added constraint: constraint((T0371)R57.CB, (T0371)S81.CB) [> 4.0206 = 6.7010 < 8.7112] w=0.1642 to align # Constraint # added constraint: constraint((T0371)D169.CB, (T0371)A182.CB) [> 2.9564 = 4.9273 < 6.4055] w=0.1641 to align # Constraint # added constraint: constraint((T0371)Y49.CB, (T0371)K78.CB) [> 3.3861 = 5.6436 < 7.3367] w=0.1641 to align # Constraint # added constraint: constraint((T0371)T52.CB, (T0371)S82.CB) [> 4.4150 = 7.3583 < 9.5658] w=0.1641 to align # Constraint # added constraint: constraint((T0371)V51.CB, (T0371)G83.CA) [> 4.3795 = 7.2991 < 9.4889] w=0.1641 to align # Constraint # added constraint: constraint((T0371)E35.CB, (T0371)L69.CB) [> 3.6787 = 6.1311 < 7.9704] w=0.1640 to align # Constraint # added constraint: constraint((T0371)T152.CB, (T0371)A279.CB) [> 3.7029 = 6.1715 < 8.0230] w=0.1621 to align # Constraint # added constraint: constraint((T0371)F209.CB, (T0371)D237.CB) [> 3.8604 = 6.4340 < 8.3642] w=0.1621 to align # Constraint # added constraint: constraint((T0371)L24.CB, (T0371)I275.CB) [> 4.3671 = 7.2784 < 9.4620] w=0.1621 to align # Constraint # added constraint: constraint((T0371)H235.CB, (T0371)I258.CB) [> 3.8939 = 6.4899 < 8.4369] w=0.1621 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)V251.CB) [> 4.5023 = 7.5039 < 9.7550] w=0.1620 to align # Constraint # added constraint: constraint((T0371)D169.CB, (T0371)R196.CB) [> 3.9299 = 6.5498 < 8.5148] w=0.1616 to align # Constraint # added constraint: constraint((T0371)V153.CB, (T0371)M189.CB) [> 2.7901 = 4.6501 < 6.0451] w=0.1610 to align # Constraint # added constraint: constraint((T0371)I34.CB, (T0371)Y66.CB) [> 4.2765 = 7.1275 < 9.2657] w=0.1577 to align # Constraint # added constraint: constraint((T0371)L119.CB, (T0371)V132.CB) [> 3.3342 = 5.5570 < 7.2240] w=0.1571 to align # Constraint # added constraint: constraint((T0371)T171.CB, (T0371)G195.CA) [> 3.7545 = 6.2575 < 8.1347] w=0.1571 to align # Constraint # added constraint: constraint((T0371)L62.CB, (T0371)S81.CB) [> 3.9232 = 6.5388 < 8.5004] w=0.1571 to align # Constraint # added constraint: constraint((T0371)Y49.CB, (T0371)F209.CB) [> 4.3731 = 7.2885 < 9.4751] w=0.1571 to align # Constraint # added constraint: constraint((T0371)N53.CB, (T0371)S81.CB) [> 4.2955 = 7.1591 < 9.3069] w=0.1570 to align # Constraint # added constraint: constraint((T0371)E226.CB, (T0371)D247.CB) [> 3.9617 = 6.6028 < 8.5836] w=0.1568 to align # Constraint # added constraint: constraint((T0371)I34.CB, (T0371)L62.CB) [> 3.1422 = 5.2371 < 6.8082] w=0.1556 to align # Constraint # added constraint: constraint((T0371)L24.CB, (T0371)I181.CB) [> 4.4413 = 7.4022 < 9.6228] w=0.1556 to align # Constraint # added constraint: constraint((T0371)F143.CB, (T0371)I193.CB) [> 3.6054 = 6.0090 < 7.8118] w=0.1550 to align # Constraint # added constraint: constraint((T0371)R217.CB, (T0371)I227.CB) [> 3.7769 = 6.2949 < 8.1834] w=0.1549 to align # Constraint # added constraint: constraint((T0371)V153.CB, (T0371)I190.CB) [> 3.8654 = 6.4423 < 8.3749] w=0.1539 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)A166.CB) [> 4.0824 = 6.8040 < 8.8452] w=0.1526 to align # Constraint # added constraint: constraint((T0371)I238.CB, (T0371)A249.CB) [> 4.4290 = 7.3817 < 9.5962] w=0.1520 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)I190.CB) [> 4.2299 = 7.0499 < 9.1648] w=0.1517 to align # Constraint # added constraint: constraint((T0371)L252.CB, (T0371)T273.CB) [> 3.4228 = 5.7046 < 7.4160] w=0.1500 to align # Constraint # added constraint: constraint((T0371)G83.CA, (T0371)F201.CB) [> 4.3432 = 7.2387 < 9.4103] w=0.1500 to align # Constraint # added constraint: constraint((T0371)E35.CB, (T0371)P59.CB) [> 2.9759 = 4.9598 < 6.4478] w=0.1500 to align # Constraint # added constraint: constraint((T0371)A100.CB, (T0371)A134.CB) [> 3.8596 = 6.4327 < 8.3625] w=0.1499 to align # Constraint # added constraint: constraint((T0371)M84.CB, (T0371)K203.CB) [> 2.9711 = 4.9517 < 6.4373] w=0.1499 to align # Constraint # added constraint: constraint((T0371)L30.CB, (T0371)D140.CB) [> 3.9570 = 6.5950 < 8.5735] w=0.1499 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)Y48.CB) [> 4.5580 = 7.5967 < 9.8757] w=0.1498 to align # Constraint # added constraint: constraint((T0371)F38.CB, (T0371)L69.CB) [> 3.8044 = 6.3407 < 8.2429] w=0.1496 to align # Constraint # added constraint: constraint((T0371)T86.CB, (T0371)S107.CB) [> 3.9647 = 6.6078 < 8.5902] w=0.1493 to align # Constraint # added constraint: constraint((T0371)T86.CB, (T0371)L111.CB) [> 4.4622 = 7.4369 < 9.6680] w=0.1486 to align # Constraint # added constraint: constraint((T0371)N150.CB, (T0371)I193.CB) [> 4.3913 = 7.3189 < 9.5145] w=0.1481 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)M220.CB) [> 4.0043 = 6.6739 < 8.6761] w=0.1478 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)K203.CB) [> 4.6714 = 7.7856 < 10.1213] w=0.1477 to align # Constraint # added constraint: constraint((T0371)P162.CB, (T0371)T188.CB) [> 3.0683 = 5.1138 < 6.6479] w=0.1474 to align # Constraint # added constraint: constraint((T0371)A163.CB, (T0371)T188.CB) [> 3.3140 = 5.5233 < 7.1804] w=0.1474 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)T188.CB) [> 3.6831 = 6.1385 < 7.9800] w=0.1474 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)A187.CB) [> 3.7867 = 6.3111 < 8.2045] w=0.1474 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)M208.CB) [> 3.7258 = 6.2097 < 8.0725] w=0.1454 to align # Constraint # added constraint: constraint((T0371)S192.CB, (T0371)L216.CB) [> 3.8057 = 6.3429 < 8.2458] w=0.1447 to align # Constraint # added constraint: constraint((T0371)P162.CB, (T0371)E191.CB) [> 3.1927 = 5.3211 < 6.9174] w=0.1447 to align # Constraint # added constraint: constraint((T0371)I85.CB, (T0371)F201.CB) [> 2.9287 = 4.8812 < 6.3456] w=0.1428 to align # Constraint # added constraint: constraint((T0371)S58.CB, (T0371)S81.CB) [> 3.9855 = 6.6425 < 8.6353] w=0.1428 to align # Constraint # added constraint: constraint((T0371)I80.CB, (T0371)M208.CB) [> 3.5048 = 5.8414 < 7.5938] w=0.1428 to align # Constraint # added constraint: constraint((T0371)G254.CA, (T0371)E277.CB) [> 3.8064 = 6.3440 < 8.2472] w=0.1428 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)I199.CB) [> 3.2444 = 5.4074 < 7.0296] w=0.1407 to align # Constraint # added constraint: constraint((T0371)L155.CB, (T0371)A279.CB) [> 3.3719 = 5.6198 < 7.3058] w=0.1407 to align # Constraint # added constraint: constraint((T0371)T152.CB, (T0371)C276.CB) [> 3.6194 = 6.0323 < 7.8420] w=0.1407 to align # Constraint # added constraint: constraint((T0371)V230.CB, (T0371)I275.CB) [> 4.4330 = 7.3884 < 9.6049] w=0.1407 to align # Constraint # added constraint: constraint((T0371)L71.CB, (T0371)D114.CB) [> 3.5745 = 5.9575 < 7.7447] w=0.1407 to align # Constraint # added constraint: constraint((T0371)D178.CB, (T0371)I193.CB) [> 3.7392 = 6.2319 < 8.1015] w=0.1407 to align # Constraint # added constraint: constraint((T0371)G33.CA, (T0371)V136.CB) [> 4.0174 = 6.6958 < 8.7045] w=0.1407 to align # Constraint # added constraint: constraint((T0371)F38.CB, (T0371)Y66.CB) [> 3.7738 = 6.2896 < 8.1765] w=0.1406 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)I164.CB) [> 3.3859 = 5.6432 < 7.3362] w=0.1383 to align # Constraint # added constraint: constraint((T0371)A100.CB, (T0371)V132.CB) [> 3.0352 = 5.0587 < 6.5764] w=0.1364 to align # Constraint # added constraint: constraint((T0371)S107.CB, (T0371)M118.CB) [> 4.1747 = 6.9579 < 9.0453] w=0.1363 to align # Constraint # added constraint: constraint((T0371)A108.CB, (T0371)N128.CB) [> 3.5054 = 5.8423 < 7.5950] w=0.1363 to align # Constraint # added constraint: constraint((T0371)I85.CB, (T0371)M208.CB) [> 3.4943 = 5.8238 < 7.5710] w=0.1357 to align # Constraint # added constraint: constraint((T0371)D169.CB, (T0371)I183.CB) [> 4.0171 = 6.6952 < 8.7038] w=0.1357 to align # Constraint # added constraint: constraint((T0371)G103.CA, (T0371)L137.CB) [> 4.1740 = 6.9567 < 9.0437] w=0.1357 to align # Constraint # added constraint: constraint((T0371)Y48.CB, (T0371)I74.CB) [> 3.2533 = 5.4221 < 7.0488] w=0.1357 to align # Constraint # added constraint: constraint((T0371)N53.CB, (T0371)T236.CB) [> 4.0835 = 6.8058 < 8.8475] w=0.1357 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)N53.CB) [> 4.4656 = 7.4427 < 9.6755] w=0.1355 to align # Constraint # added constraint: constraint((T0371)A100.CB, (T0371)M118.CB) [> 4.1937 = 6.9896 < 9.0864] w=0.1354 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)R200.CB) [> 3.0365 = 5.0608 < 6.5790] w=0.1336 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)F198.CB) [> 3.7285 = 6.2142 < 8.0785] w=0.1336 to align # Constraint # added constraint: constraint((T0371)L31.CB, (T0371)A63.CB) [> 3.4764 = 5.7940 < 7.5322] w=0.1336 to align # Constraint # added constraint: constraint((T0371)T175.CB, (T0371)I193.CB) [> 3.9725 = 6.6209 < 8.6071] w=0.1335 to align # Constraint # added constraint: constraint((T0371)V153.CB, (T0371)I183.CB) [> 4.1191 = 6.8651 < 8.9247] w=0.1335 to align # Constraint # added constraint: constraint((T0371)A163.CB, (T0371)A187.CB) [> 3.1390 = 5.2317 < 6.8012] w=0.1332 to align # Constraint # added constraint: constraint((T0371)S192.CB, (T0371)M215.CB) [> 3.4960 = 5.8266 < 7.5746] w=0.1325 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)L31.CB) [> 4.1422 = 6.9037 < 8.9749] w=0.1299 to align # Constraint # added constraint: constraint((T0371)L234.CB, (T0371)K264.CB) [> 3.5047 = 5.8411 < 7.5934] w=0.1285 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)I199.CB) [> 4.2048 = 7.0079 < 9.1103] w=0.1285 to align # Constraint # added constraint: constraint((T0371)F38.CB, (T0371)I74.CB) [> 3.9716 = 6.6194 < 8.6052] w=0.1285 to align # Constraint # added constraint: constraint((T0371)S82.CB, (T0371)M208.CB) [> 4.0455 = 6.7425 < 8.7653] w=0.1285 to align # Constraint # added constraint: constraint((T0371)D169.CB, (T0371)G184.CA) [> 3.9612 = 6.6020 < 8.5826] w=0.1285 to align # Constraint # added constraint: constraint((T0371)L111.CB, (T0371)V136.CB) [> 3.7713 = 6.2855 < 8.1712] w=0.1285 to align # Constraint # added constraint: constraint((T0371)N242.CB, (T0371)I270.CB) [> 3.1184 = 5.1974 < 6.7566] w=0.1285 to align # Constraint # added constraint: constraint((T0371)G83.CA, (T0371)K203.CB) [> 3.4434 = 5.7391 < 7.4608] w=0.1285 to align # Constraint # added constraint: constraint((T0371)V99.CB, (T0371)L111.CB) [> 3.8945 = 6.4908 < 8.4381] w=0.1285 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)F198.CB) [> 2.9687 = 4.9479 < 6.4323] w=0.1264 to align # Constraint # added constraint: constraint((T0371)A166.CB, (T0371)R200.CB) [> 4.3210 = 7.2016 < 9.3621] w=0.1264 to align # Constraint # added constraint: constraint((T0371)A163.CB, (T0371)R197.CB) [> 4.1461 = 6.9102 < 8.9833] w=0.1264 to align # Constraint # added constraint: constraint((T0371)A163.CB, (T0371)R196.CB) [> 3.3226 = 5.5377 < 7.1990] w=0.1264 to align # Constraint # added constraint: constraint((T0371)A163.CB, (T0371)F198.CB) [> 3.2453 = 5.4088 < 7.0314] w=0.1264 to align # Constraint # added constraint: constraint((T0371)P162.CB, (T0371)M189.CB) [> 4.4558 = 7.4263 < 9.6542] w=0.1260 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)I183.CB) [> 3.6100 = 6.0167 < 7.8217] w=0.1233 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)F209.CB) [> 3.8485 = 6.4142 < 8.3385] w=0.1233 to align # Constraint # added constraint: constraint((T0371)A55.CB, (T0371)A166.CB) [> 2.8019 = 4.6699 < 6.0709] w=0.1214 to align # Constraint # added constraint: constraint((T0371)L102.CB, (T0371)L135.CB) [> 4.3777 = 7.2962 < 9.4851] w=0.1214 to align # Constraint # added constraint: constraint((T0371)S82.CB, (T0371)F201.CB) [> 3.6764 = 6.1273 < 7.9655] w=0.1214 to align # Constraint # added constraint: constraint((T0371)S82.CB, (T0371)N167.CB) [> 3.1934 = 5.3223 < 6.9190] w=0.1214 to align # Constraint # added constraint: constraint((T0371)A63.CB, (T0371)S73.CB) [> 3.9983 = 6.6639 < 8.6631] w=0.1214 to align # Constraint # added constraint: constraint((T0371)I85.CB, (T0371)L102.CB) [> 3.2974 = 5.4956 < 7.1443] w=0.1214 to align # Constraint # added constraint: constraint((T0371)T37.CB, (T0371)L111.CB) [> 3.7198 = 6.1997 < 8.0596] w=0.1214 to align # Constraint # added constraint: constraint((T0371)G254.CA, (T0371)I275.CB) [> 4.0371 = 6.7285 < 8.7471] w=0.1214 to align # Constraint # added constraint: constraint((T0371)G241.CA, (T0371)P272.CB) [> 3.8852 = 6.4753 < 8.4179] w=0.1214 to align # Constraint # added constraint: constraint((T0371)V230.CB, (T0371)C276.CB) [> 4.3705 = 7.2842 < 9.4694] w=0.1214 to align # Constraint # added constraint: constraint((T0371)V251.CB, (T0371)V271.CB) [> 4.4443 = 7.4071 < 9.6292] w=0.1213 to align # Constraint # added constraint: constraint((T0371)Y101.CB, (T0371)M118.CB) [> 3.6194 = 6.0324 < 7.8421] w=0.1211 to align # Constraint # added constraint: constraint((T0371)V99.CB, (T0371)M118.CB) [> 3.5018 = 5.8363 < 7.5872] w=0.1211 to align # Constraint # added constraint: constraint((T0371)V99.CB, (T0371)K117.CB) [> 4.0198 = 6.6997 < 8.7096] w=0.1211 to align # Constraint # added constraint: constraint((T0371)Y89.CB, (T0371)S107.CB) [> 3.1230 = 5.2049 < 6.7664] w=0.1200 to align # Constraint # added constraint: constraint((T0371)I90.CB, (T0371)G202.CA) [> 3.3983 = 5.6638 < 7.3629] w=0.1197 to align # Constraint # added constraint: constraint((T0371)L174.CB, (T0371)I193.CB) [> 3.3393 = 5.5655 < 7.2351] w=0.1193 to align # Constraint # added constraint: constraint((T0371)I34.CB, (T0371)A63.CB) [> 3.2569 = 5.4281 < 7.0565] w=0.1193 to align # Constraint # added constraint: constraint((T0371)R157.CB, (T0371)M189.CB) [> 3.8244 = 6.3739 < 8.2861] w=0.1182 to align # Constraint # added constraint: constraint((T0371)L24.CB, (T0371)I183.CB) [> 4.2486 = 7.0810 < 9.2053] w=0.1182 to align # Constraint # added constraint: constraint((T0371)L234.CB, (T0371)I258.CB) [> 3.7845 = 6.3075 < 8.1998] w=0.1172 to align # Constraint # added constraint: constraint((T0371)D232.CB, (T0371)A249.CB) [> 4.1010 = 6.8350 < 8.8855] w=0.1172 to align # Constraint # added constraint: constraint((T0371)Y101.CB, (T0371)L138.CB) [> 4.1792 = 6.9653 < 9.0548] w=0.1142 to align # Constraint # added constraint: constraint((T0371)Y101.CB, (T0371)V136.CB) [> 3.0330 = 5.0550 < 6.5716] w=0.1142 to align # Constraint # added constraint: constraint((T0371)L234.CB, (T0371)T268.CB) [> 3.4900 = 5.8166 < 7.5616] w=0.1142 to align # Constraint # added constraint: constraint((T0371)F143.CB, (T0371)S192.CB) [> 3.8675 = 6.4459 < 8.3797] w=0.1142 to align # Constraint # added constraint: constraint((T0371)T26.CB, (T0371)T253.CB) [> 4.1582 = 6.9304 < 9.0095] w=0.1142 to align # Constraint # added constraint: constraint((T0371)A55.CB, (T0371)T86.CB) [> 4.3880 = 7.3133 < 9.5073] w=0.1142 to align # Constraint # added constraint: constraint((T0371)L234.CB, (T0371)I265.CB) [> 3.9122 = 6.5203 < 8.4764] w=0.1142 to align # Constraint # added constraint: constraint((T0371)L174.CB, (T0371)I190.CB) [> 3.5256 = 5.8759 < 7.6387] w=0.1142 to align # Constraint # added constraint: constraint((T0371)M118.CB, (T0371)V136.CB) [> 4.2815 = 7.1359 < 9.2766] w=0.1142 to align # Constraint # added constraint: constraint((T0371)G83.CA, (T0371)M208.CB) [> 3.6558 = 6.0930 < 7.9209] w=0.1142 to align # Constraint # added constraint: constraint((T0371)T188.CB, (T0371)L216.CB) [> 3.9267 = 6.5446 < 8.5080] w=0.1142 to align # Constraint # added constraint: constraint((T0371)T175.CB, (T0371)A187.CB) [> 4.2094 = 7.0157 < 9.1205] w=0.1142 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)F38.CB) [> 4.6186 = 7.6976 < 10.0069] w=0.1141 to align # Constraint # added constraint: constraint((T0371)N170.CB, (T0371)R196.CB) [> 3.5136 = 5.8561 < 7.6129] w=0.1141 to align # Constraint # added constraint: constraint((T0371)G231.CA, (T0371)L252.CB) [> 3.4164 = 5.6940 < 7.4021] w=0.1141 to align # Constraint # added constraint: constraint((T0371)V230.CB, (T0371)L252.CB) [> 4.1033 = 6.8389 < 8.8905] w=0.1141 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)I227.CB) [> 4.4835 = 7.4725 < 9.7142] w=0.1140 to align # Constraint # added constraint: constraint((T0371)A100.CB, (T0371)L119.CB) [> 3.7167 = 6.1946 < 8.0529] w=0.1140 to align # Constraint # added constraint: constraint((T0371)V99.CB, (T0371)L119.CB) [> 4.1674 = 6.9457 < 9.0295] w=0.1140 to align # Constraint # added constraint: constraint((T0371)L156.CB, (T0371)A279.CB) [> 3.9299 = 6.5499 < 8.5148] w=0.1122 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)L174.CB) [> 3.7905 = 6.3175 < 8.2128] w=0.1122 to align # Constraint # added constraint: constraint((T0371)T37.CB, (T0371)V136.CB) [> 3.6878 = 6.1464 < 7.9903] w=0.1122 to align # Constraint # added constraint: constraint((T0371)A163.CB, (T0371)I199.CB) [> 4.1348 = 6.8914 < 8.9588] w=0.1071 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)R200.CB) [> 3.8810 = 6.4683 < 8.4088] w=0.1071 to align # Constraint # added constraint: constraint((T0371)T86.CB, (T0371)G202.CA) [> 3.7838 = 6.3064 < 8.1983] w=0.1071 to align # Constraint # added constraint: constraint((T0371)I98.CB, (T0371)N133.CB) [> 3.0243 = 5.0406 < 6.5527] w=0.1071 to align # Constraint # added constraint: constraint((T0371)I98.CB, (T0371)V132.CB) [> 3.1562 = 5.2603 < 6.8384] w=0.1071 to align # Constraint # added constraint: constraint((T0371)L135.CB, (T0371)L156.CB) [> 3.1576 = 5.2627 < 6.8416] w=0.1071 to align # Constraint # added constraint: constraint((T0371)I98.CB, (T0371)M118.CB) [> 4.5143 = 7.5239 < 9.7811] w=0.1071 to align # Constraint # added constraint: constraint((T0371)Y101.CB, (T0371)L111.CB) [> 3.5124 = 5.8541 < 7.6103] w=0.1071 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)F209.CB) [> 4.4806 = 7.4677 < 9.7080] w=0.1071 to align # Constraint # added constraint: constraint((T0371)L41.CB, (T0371)S107.CB) [> 3.6583 = 6.0972 < 7.9264] w=0.1071 to align # Constraint # added constraint: constraint((T0371)Y13.CB, (T0371)L246.CB) [> 3.9346 = 6.5577 < 8.5250] w=0.1071 to align # Constraint # added constraint: constraint((T0371)K78.CB, (T0371)N106.CB) [> 4.0990 = 6.8316 < 8.8811] w=0.1070 to align # Constraint # added constraint: constraint((T0371)T175.CB, (T0371)I190.CB) [> 3.9616 = 6.6027 < 8.5835] w=0.1070 to align # Constraint # added constraint: constraint((T0371)Y48.CB, (T0371)L71.CB) [> 3.2642 = 5.4404 < 7.0725] w=0.1070 to align # Constraint # added constraint: constraint((T0371)K42.CB, (T0371)L71.CB) [> 4.1054 = 6.8423 < 8.8950] w=0.1070 to align # Constraint # added constraint: constraint((T0371)E226.CB, (T0371)L246.CB) [> 4.4744 = 7.4574 < 9.6946] w=0.1068 to align # Constraint # added constraint: constraint((T0371)D169.CB, (T0371)V186.CB) [> 2.9248 = 4.8746 < 6.3370] w=0.1050 to align # Constraint # added constraint: constraint((T0371)I34.CB, (T0371)D139.CB) [> 4.1925 = 6.9875 < 9.0838] w=0.1007 to align # Constraint # added constraint: constraint((T0371)I34.CB, (T0371)V136.CB) [> 4.2383 = 7.0638 < 9.1829] w=0.1007 to align # Constraint # added constraint: constraint((T0371)L102.CB, (T0371)L137.CB) [> 2.8828 = 4.8047 < 6.2461] w=0.1000 to align # Constraint # added constraint: constraint((T0371)L102.CB, (T0371)V136.CB) [> 4.0725 = 6.7874 < 8.8236] w=0.1000 to align # Constraint # added constraint: constraint((T0371)L135.CB, (T0371)A163.CB) [> 3.2527 = 5.4212 < 7.0476] w=0.1000 to align # Constraint # added constraint: constraint((T0371)G83.CA, (T0371)S107.CB) [> 3.5161 = 5.8602 < 7.6182] w=0.1000 to align # Constraint # added constraint: constraint((T0371)Y27.CB, (T0371)G254.CA) [> 3.2492 = 5.4154 < 7.0400] w=0.1000 to align # Constraint # added constraint: constraint((T0371)V136.CB, (T0371)V165.CB) [> 4.5756 = 7.6260 < 9.9139] w=0.1000 to align # Constraint # added constraint: constraint((T0371)V136.CB, (T0371)A166.CB) [> 4.2221 = 7.0369 < 9.1479] w=0.1000 to align # Constraint # added constraint: constraint((T0371)N53.CB, (T0371)N167.CB) [> 2.4555 = 4.0926 < 5.3204] w=0.1000 to align # Constraint # added constraint: constraint((T0371)A55.CB, (T0371)I80.CB) [> 3.8218 = 6.3696 < 8.2805] w=0.1000 to align # Constraint # added constraint: constraint((T0371)V99.CB, (T0371)L135.CB) [> 4.1998 = 6.9997 < 9.0997] w=0.1000 to align # Constraint # added constraint: constraint((T0371)I98.CB, (T0371)L119.CB) [> 2.8761 = 4.7934 < 6.2315] w=0.1000 to align # Constraint # added constraint: constraint((T0371)D47.CB, (T0371)M220.CB) [> 4.0106 = 6.6843 < 8.6896] w=0.1000 to align # Constraint # added constraint: constraint((T0371)M84.CB, (T0371)F209.CB) [> 4.0680 = 6.7800 < 8.8140] w=0.1000 to align # Constraint # added constraint: constraint((T0371)L252.CB, (T0371)I265.CB) [> 4.0465 = 6.7442 < 8.7675] w=0.0999 to align # Constraint # added constraint: constraint((T0371)K78.CB, (T0371)T104.CB) [> 3.7934 = 6.3224 < 8.2191] w=0.0999 to align # Constraint # added constraint: constraint((T0371)E191.CB, (T0371)L216.CB) [> 4.0805 = 6.8009 < 8.8412] w=0.0999 to align # Constraint # added constraint: constraint((T0371)A55.CB, (T0371)S82.CB) [> 3.0924 = 5.1541 < 6.7003] w=0.0998 to align # Constraint # added constraint: constraint((T0371)D54.CB, (T0371)S82.CB) [> 4.0380 = 6.7299 < 8.7489] w=0.0998 to align # Constraint # added constraint: constraint((T0371)M229.CB, (T0371)L250.CB) [> 4.0339 = 6.7232 < 8.7402] w=0.0998 to align # Constraint # added constraint: constraint((T0371)L228.CB, (T0371)L250.CB) [> 4.2079 = 7.0131 < 9.1170] w=0.0998 to align # Constraint # added constraint: constraint((T0371)K87.CB, (T0371)D114.CB) [> 3.0739 = 5.1232 < 6.6602] w=0.0997 to align # Constraint # added constraint: constraint((T0371)G97.CA, (T0371)I116.CB) [> 3.1344 = 5.2241 < 6.7913] w=0.0997 to align # Constraint # added constraint: constraint((T0371)I98.CB, (T0371)I116.CB) [> 3.9807 = 6.6345 < 8.6248] w=0.0997 to align # Constraint # added constraint: constraint((T0371)A108.CB, (T0371)L119.CB) [> 4.2937 = 7.1562 < 9.3030] w=0.0997 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)M229.CB) [> 4.3474 = 7.2457 < 9.4194] w=0.0974 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)F209.CB) [> 4.6585 = 7.7642 < 10.0935] w=0.0958 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)I164.CB) [> 4.5794 = 7.6324 < 9.9221] w=0.0954 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)K203.CB) [> 4.1230 = 6.8716 < 8.9331] w=0.0954 to align # Constraint # added constraint: constraint((T0371)M84.CB, (T0371)Y110.CB) [> 3.5980 = 5.9967 < 7.7957] w=0.0943 to align # Constraint # added constraint: constraint((T0371)T37.CB, (T0371)P59.CB) [> 4.3934 = 7.3223 < 9.5190] w=0.0935 to align # Constraint # added constraint: constraint((T0371)I90.CB, (T0371)A134.CB) [> 4.0100 = 6.6833 < 8.6883] w=0.0928 to align # Constraint # added constraint: constraint((T0371)A134.CB, (T0371)P162.CB) [> 2.9939 = 4.9899 < 6.4869] w=0.0928 to align # Constraint # added constraint: constraint((T0371)L102.CB, (T0371)L138.CB) [> 3.6619 = 6.1031 < 7.9341] w=0.0928 to align # Constraint # added constraint: constraint((T0371)L135.CB, (T0371)I164.CB) [> 4.1467 = 6.9112 < 8.9846] w=0.0928 to align # Constraint # added constraint: constraint((T0371)K87.CB, (T0371)L111.CB) [> 3.6174 = 6.0291 < 7.8378] w=0.0928 to align # Constraint # added constraint: constraint((T0371)A187.CB, (T0371)F198.CB) [> 3.5225 = 5.8708 < 7.6320] w=0.0928 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)G184.CA) [> 4.1646 = 6.9411 < 9.0234] w=0.0928 to align # Constraint # added constraint: constraint((T0371)Y48.CB, (T0371)K78.CB) [> 3.8195 = 6.3658 < 8.2755] w=0.0928 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)A182.CB) [> 3.9458 = 6.5764 < 8.5493] w=0.0928 to align # Constraint # added constraint: constraint((T0371)M229.CB, (T0371)N242.CB) [> 4.4002 = 7.3337 < 9.5338] w=0.0928 to align # Constraint # added constraint: constraint((T0371)L149.CB, (T0371)I183.CB) [> 4.3294 = 7.2157 < 9.3804] w=0.0928 to align # Constraint # added constraint: constraint((T0371)D54.CB, (T0371)I80.CB) [> 3.7799 = 6.2997 < 8.1897] w=0.0928 to align # Constraint # added constraint: constraint((T0371)G142.CA, (T0371)T177.CB) [> 3.8832 = 6.4720 < 8.4136] w=0.0928 to align # Constraint # added constraint: constraint((T0371)T52.CB, (T0371)G83.CA) [> 4.1356 = 6.8926 < 8.9604] w=0.0928 to align # Constraint # added constraint: constraint((T0371)T37.CB, (T0371)V132.CB) [> 3.3737 = 5.6228 < 7.3097] w=0.0928 to align # Constraint # added constraint: constraint((T0371)Y27.CB, (T0371)T177.CB) [> 4.2242 = 7.0402 < 9.1523] w=0.0927 to align # Constraint # added constraint: constraint((T0371)A163.CB, (T0371)L216.CB) [> 4.3926 = 7.3210 < 9.5172] w=0.0926 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)T236.CB) [> 4.6328 = 7.7214 < 10.0378] w=0.0907 to align # Constraint # added constraint: constraint((T0371)L69.CB, (T0371)I85.CB) [> 3.3647 = 5.6077 < 7.2901] w=0.0907 to align # Constraint # added constraint: constraint((T0371)D205.CB, (T0371)L239.CB) [> 3.2433 = 5.4056 < 7.0272] w=0.0907 to align # Constraint # added constraint: constraint((T0371)V136.CB, (T0371)T188.CB) [> 3.9722 = 6.6203 < 8.6064] w=0.0886 to align # Constraint # added constraint: constraint((T0371)P162.CB, (T0371)S192.CB) [> 4.6225 = 7.7041 < 10.0154] w=0.0875 to align # Constraint # added constraint: constraint((T0371)I90.CB, (T0371)I116.CB) [> 4.2285 = 7.0476 < 9.1618] w=0.0857 to align # Constraint # added constraint: constraint((T0371)T86.CB, (T0371)A166.CB) [> 3.0759 = 5.1265 < 6.6644] w=0.0857 to align # Constraint # added constraint: constraint((T0371)T86.CB, (T0371)I164.CB) [> 3.7791 = 6.2984 < 8.1880] w=0.0857 to align # Constraint # added constraint: constraint((T0371)G83.CA, (T0371)A166.CB) [> 3.1703 = 5.2839 < 6.8691] w=0.0857 to align # Constraint # added constraint: constraint((T0371)P59.CB, (T0371)M84.CB) [> 4.0209 = 6.7015 < 8.7119] w=0.0857 to align # Constraint # added constraint: constraint((T0371)N53.CB, (T0371)K203.CB) [> 3.2946 = 5.4910 < 7.1383] w=0.0857 to align # Constraint # added constraint: constraint((T0371)N53.CB, (T0371)G202.CA) [> 3.2069 = 5.3447 < 6.9482] w=0.0857 to align # Constraint # added constraint: constraint((T0371)N53.CB, (T0371)A166.CB) [> 4.4200 = 7.3667 < 9.5767] w=0.0857 to align # Constraint # added constraint: constraint((T0371)V136.CB, (T0371)I164.CB) [> 2.9403 = 4.9004 < 6.3706] w=0.0857 to align # Constraint # added constraint: constraint((T0371)L102.CB, (T0371)F143.CB) [> 4.1151 = 6.8585 < 8.9160] w=0.0857 to align # Constraint # added constraint: constraint((T0371)L102.CB, (T0371)V186.CB) [> 4.0212 = 6.7020 < 8.7126] w=0.0857 to align # Constraint # added constraint: constraint((T0371)L24.CB, (T0371)T37.CB) [> 4.3569 = 7.2615 < 9.4400] w=0.0857 to align # Constraint # added constraint: constraint((T0371)L234.CB, (T0371)K266.CB) [> 3.0125 = 5.0209 < 6.5272] w=0.0857 to align # Constraint # added constraint: constraint((T0371)M84.CB, (T0371)M208.CB) [> 2.1689 = 3.6149 < 4.6993] w=0.0857 to align # Constraint # added constraint: constraint((T0371)K12.CB, (T0371)R225.CB) [> 3.8022 = 6.3369 < 8.2380] w=0.0857 to align # Constraint # added constraint: constraint((T0371)N36.CB, (T0371)P59.CB) [> 4.2955 = 7.1592 < 9.3069] w=0.0857 to align # Constraint # added constraint: constraint((T0371)I80.CB, (T0371)F209.CB) [> 3.9803 = 6.6339 < 8.6241] w=0.0857 to align # Constraint # added constraint: constraint((T0371)T168.CB, (T0371)I183.CB) [> 4.4517 = 7.4196 < 9.6454] w=0.0856 to align # Constraint # added constraint: constraint((T0371)V51.CB, (T0371)S81.CB) [> 4.6024 = 7.6708 < 9.9720] w=0.0856 to align # Constraint # added constraint: constraint((T0371)T168.CB, (T0371)A182.CB) [> 3.7370 = 6.2284 < 8.0969] w=0.0856 to align # Constraint # added constraint: constraint((T0371)E262.CB, (T0371)V271.CB) [> 3.7223 = 6.2039 < 8.0651] w=0.0835 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)S192.CB) [> 4.3841 = 7.3068 < 9.4989] w=0.0835 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)R196.CB) [> 4.2248 = 7.0413 < 9.1536] w=0.0826 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)L252.CB) [> 4.0083 = 6.6805 < 8.6846] w=0.0800 to align # Constraint # added constraint: constraint((T0371)K14.CB, (T0371)R159.CB) [> 4.4983 = 7.4972 < 9.7463] w=0.0794 to align # Constraint # added constraint: constraint((T0371)L137.CB, (T0371)I183.CB) [> 3.8396 = 6.3993 < 8.3191] w=0.0785 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)F209.CB) [> 4.7078 = 7.8463 < 10.2002] w=0.0785 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)I183.CB) [> 3.3603 = 5.6004 < 7.2806] w=0.0785 to align # Constraint # added constraint: constraint((T0371)V112.CB, (T0371)S122.CB) [> 4.3229 = 7.2049 < 9.3664] w=0.0785 to align # Constraint # added constraint: constraint((T0371)I80.CB, (T0371)K203.CB) [> 3.7833 = 6.3055 < 8.1971] w=0.0785 to align # Constraint # added constraint: constraint((T0371)I79.CB, (T0371)F209.CB) [> 3.7570 = 6.2617 < 8.1402] w=0.0785 to align # Constraint # added constraint: constraint((T0371)S56.CB, (T0371)S82.CB) [> 4.0402 = 6.7337 < 8.7539] w=0.0785 to align # Constraint # added constraint: constraint((T0371)V99.CB, (T0371)R196.CB) [> 4.5140 = 7.5233 < 9.7803] w=0.0785 to align # Constraint # added constraint: constraint((T0371)L10.CB, (T0371)L228.CB) [> 4.3346 = 7.2244 < 9.3917] w=0.0785 to align # Constraint # added constraint: constraint((T0371)I74.CB, (T0371)Y89.CB) [> 3.7215 = 6.2025 < 8.0633] w=0.0785 to align # Constraint # added constraint: constraint((T0371)G83.CA, (T0371)T236.CB) [> 3.8619 = 6.4365 < 8.3675] w=0.0785 to align # Constraint # added constraint: constraint((T0371)I227.CB, (T0371)T248.CB) [> 4.1230 = 6.8717 < 8.9332] w=0.0785 to align # Constraint # added constraint: constraint((T0371)L119.CB, (T0371)I129.CB) [> 3.8300 = 6.3832 < 8.2982] w=0.0785 to align # Constraint # added constraint: constraint((T0371)A166.CB, (T0371)I183.CB) [> 3.4399 = 5.7331 < 7.4530] w=0.0784 to align # Constraint # added constraint: constraint((T0371)H67.CB, (T0371)I79.CB) [> 3.7016 = 6.1694 < 8.0202] w=0.0784 to align # Constraint # added constraint: constraint((T0371)I190.CB, (T0371)I199.CB) [> 3.5243 = 5.8738 < 7.6360] w=0.0764 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)R217.CB) [> 3.9082 = 6.5136 < 8.4677] w=0.0764 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)E191.CB) [> 3.6924 = 6.1540 < 8.0001] w=0.0764 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)M208.CB) [> 4.6993 = 7.8322 < 10.1818] w=0.0744 to align # Constraint # added constraint: constraint((T0371)N170.CB, (T0371)G185.CA) [> 3.3156 = 5.5260 < 7.1838] w=0.0714 to align # Constraint # added constraint: constraint((T0371)D47.CB, (T0371)I74.CB) [> 3.4414 = 5.7356 < 7.4563] w=0.0714 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)R225.CB) [> 3.4253 = 5.7088 < 7.4215] w=0.0714 to align # Constraint # added constraint: constraint((T0371)T75.CB, (T0371)Y89.CB) [> 3.3619 = 5.6033 < 7.2842] w=0.0714 to align # Constraint # added constraint: constraint((T0371)D47.CB, (T0371)T75.CB) [> 3.9167 = 6.5278 < 8.4862] w=0.0714 to align # Constraint # added constraint: constraint((T0371)N28.CB, (T0371)P59.CB) [> 3.7395 = 6.2325 < 8.1022] w=0.0713 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)L174.CB) [> 4.2812 = 7.1354 < 9.2760] w=0.0713 to align # Constraint # added constraint: constraint((T0371)D39.CB, (T0371)P59.CB) [> 3.5287 = 5.8811 < 7.6455] w=0.0693 to align # Constraint # added constraint: constraint((T0371)Y40.CB, (T0371)L135.CB) [> 3.2423 = 5.4038 < 7.0249] w=0.0693 to align # Constraint # added constraint: constraint((T0371)D247.CB, (T0371)P272.CB) [> 3.0116 = 5.0194 < 6.5252] w=0.0693 to align # Constraint # added constraint: constraint((T0371)S82.CB, (T0371)T168.CB) [> 3.4508 = 5.7514 < 7.4768] w=0.0693 to align # Constraint # added constraint: constraint((T0371)S82.CB, (T0371)I199.CB) [> 3.5654 = 5.9424 < 7.7251] w=0.0693 to align # Constraint # added constraint: constraint((T0371)G241.CA, (T0371)T268.CB) [> 3.8629 = 6.4382 < 8.3696] w=0.0693 to align # Constraint # added constraint: constraint((T0371)T248.CB, (T0371)V271.CB) [> 4.3363 = 7.2272 < 9.3953] w=0.0693 to align # Constraint # added constraint: constraint((T0371)D54.CB, (T0371)N167.CB) [> 4.3861 = 7.3102 < 9.5032] w=0.0643 to align # Constraint # added constraint: constraint((T0371)I85.CB, (T0371)A166.CB) [> 4.5665 = 7.6108 < 9.8940] w=0.0643 to align # Constraint # added constraint: constraint((T0371)Y89.CB, (T0371)I164.CB) [> 4.4389 = 7.3981 < 9.6175] w=0.0643 to align # Constraint # added constraint: constraint((T0371)G103.CA, (T0371)L119.CB) [> 4.5356 = 7.5594 < 9.8272] w=0.0643 to align # Constraint # added constraint: constraint((T0371)K203.CB, (T0371)G241.CA) [> 4.5969 = 7.6615 < 9.9600] w=0.0643 to align # Constraint # added constraint: constraint((T0371)K151.CB, (T0371)I275.CB) [> 4.4871 = 7.4785 < 9.7220] w=0.0643 to align # Constraint # added constraint: constraint((T0371)L62.CB, (T0371)A76.CB) [> 4.2427 = 7.0711 < 9.1924] w=0.0643 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)L174.CB) [> 3.8567 = 6.4277 < 8.3561] w=0.0643 to align # Constraint # added constraint: constraint((T0371)P59.CB, (T0371)K78.CB) [> 4.1890 = 6.9816 < 9.0761] w=0.0643 to align # Constraint # added constraint: constraint((T0371)A100.CB, (T0371)P120.CB) [> 3.7200 = 6.2000 < 8.0599] w=0.0643 to align # Constraint # added constraint: constraint((T0371)G254.CA, (T0371)V271.CB) [> 3.6541 = 6.0901 < 7.9171] w=0.0643 to align # Constraint # added constraint: constraint((T0371)A163.CB, (T0371)S192.CB) [> 4.1115 = 6.8526 < 8.9083] w=0.0622 to align # Constraint # added constraint: constraint((T0371)L41.CB, (T0371)L135.CB) [> 3.4877 = 5.8128 < 7.5566] w=0.0622 to align # Constraint # added constraint: constraint((T0371)V136.CB, (T0371)G185.CA) [> 3.7569 = 6.2615 < 8.1400] w=0.0622 to align # Constraint # added constraint: constraint((T0371)L135.CB, (T0371)V179.CB) [> 4.3222 = 7.2037 < 9.3649] w=0.0611 to align # Constraint # added constraint: constraint((T0371)Q44.CB, (T0371)E131.CB) [> 3.4316 = 5.7193 < 7.4350] w=0.0601 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)G184.CA) [> 4.2581 = 7.0968 < 9.2258] w=0.0571 to align # Constraint # added constraint: constraint((T0371)S56.CB, (T0371)S81.CB) [> 4.7065 = 7.8442 < 10.1974] w=0.0571 to align # Constraint # added constraint: constraint((T0371)L155.CB, (T0371)L283.CB) [> 4.4715 = 7.4526 < 9.6883] w=0.0571 to align # Constraint # added constraint: constraint((T0371)V99.CB, (T0371)N167.CB) [> 3.6581 = 6.0969 < 7.9259] w=0.0571 to align # Constraint # added constraint: constraint((T0371)G103.CA, (T0371)L135.CB) [> 4.3158 = 7.1930 < 9.3509] w=0.0571 to align # Constraint # added constraint: constraint((T0371)F209.CB, (T0371)T236.CB) [> 3.9324 = 6.5539 < 8.5201] w=0.0571 to align # Constraint # added constraint: constraint((T0371)N53.CB, (T0371)G195.CA) [> 3.9873 = 6.6454 < 8.6390] w=0.0571 to align # Constraint # added constraint: constraint((T0371)V94.CB, (T0371)K219.CB) [> 4.0352 = 6.7253 < 8.7429] w=0.0571 to align # Constraint # added constraint: constraint((T0371)Y40.CB, (T0371)Y110.CB) [> 3.0333 = 5.0555 < 6.5721] w=0.0571 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)I181.CB) [> 4.1306 = 6.8844 < 8.9497] w=0.0557 to align # Constraint # added constraint: constraint((T0371)F17.CB, (T0371)K203.CB) [> 4.5757 = 7.6261 < 9.9139] w=0.0550 to align # Constraint # added constraint: constraint((T0371)Y27.CB, (T0371)L135.CB) [> 4.3189 = 7.1982 < 9.3576] w=0.0540 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)I181.CB) [> 4.1903 = 6.9839 < 9.0791] w=0.0507 to align # Constraint # added constraint: constraint((T0371)L41.CB, (T0371)I116.CB) [> 4.0574 = 6.7624 < 8.7911] w=0.0500 to align # Constraint # added constraint: constraint((T0371)Y13.CB, (T0371)R225.CB) [> 4.4665 = 7.4442 < 9.6775] w=0.0500 to align # Constraint # added constraint: constraint((T0371)N242.CB, (T0371)I265.CB) [> 4.3971 = 7.3284 < 9.5270] w=0.0499 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)I275.CB) [> 2.9575 = 4.9292 < 6.4079] w=0.0499 to align # Constraint # added constraint: constraint((T0371)G241.CA, (T0371)L250.CB) [> 3.9119 = 6.5199 < 8.4759] w=0.0499 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)P173.CB) [> 4.0067 = 6.6778 < 8.6811] w=0.0479 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)T236.CB) [> 3.5555 = 5.9258 < 7.7036] w=0.0479 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)F198.CB) [> 3.8351 = 6.3919 < 8.3095] w=0.0479 to align # Constraint # added constraint: constraint((T0371)T248.CB, (T0371)I275.CB) [> 4.3789 = 7.2982 < 9.4877] w=0.0479 to align # Constraint # added constraint: constraint((T0371)V136.CB, (T0371)V179.CB) [> 3.4336 = 5.7227 < 7.4395] w=0.0468 to align # Constraint # added constraint: constraint((T0371)P59.CB, (T0371)D77.CB) [> 4.3191 = 7.1985 < 9.3580] w=0.0428 to align # Constraint # added constraint: constraint((T0371)E88.CB, (T0371)D214.CB) [> 4.6924 = 7.8207 < 10.1669] w=0.0428 to align # Constraint # added constraint: constraint((T0371)N53.CB, (T0371)M208.CB) [> 4.6936 = 7.8226 < 10.1694] w=0.0428 to align # Constraint # added constraint: constraint((T0371)Y48.CB, (T0371)L216.CB) [> 4.5083 = 7.5139 < 9.7681] w=0.0428 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)A249.CB) [> 4.7705 = 7.9508 < 10.3361] w=0.0428 to align # Constraint # added constraint: constraint((T0371)L156.CB, (T0371)L194.CB) [> 2.6237 = 4.3728 < 5.6847] w=0.0428 to align # Constraint # added constraint: constraint((T0371)A100.CB, (T0371)L156.CB) [> 3.2729 = 5.4548 < 7.0912] w=0.0428 to align # Constraint # added constraint: constraint((T0371)Y48.CB, (T0371)S73.CB) [> 3.8829 = 6.4715 < 8.4129] w=0.0428 to align # Constraint # added constraint: constraint((T0371)K78.CB, (T0371)Y101.CB) [> 4.0679 = 6.7798 < 8.8138] w=0.0428 to align # Constraint # added constraint: constraint((T0371)Y48.CB, (T0371)F72.CB) [> 3.8777 = 6.4628 < 8.4016] w=0.0428 to align # Constraint # added constraint: constraint((T0371)P59.CB, (T0371)E131.CB) [> 4.4042 = 7.3403 < 9.5424] w=0.0428 to align # Constraint # added constraint: constraint((T0371)D232.CB, (T0371)I275.CB) [> 4.1193 = 6.8654 < 8.9251] w=0.0428 to align # Constraint # added constraint: constraint((T0371)V94.CB, (T0371)T104.CB) [> 3.9843 = 6.6404 < 8.6326] w=0.0408 to align # Constraint # added constraint: constraint((T0371)V136.CB, (T0371)S192.CB) [> 3.8714 = 6.4524 < 8.3881] w=0.0408 to align # Constraint # added constraint: constraint((T0371)T248.CB, (T0371)C276.CB) [> 3.6666 = 6.1111 < 7.9444] w=0.0408 to align # Constraint # added constraint: constraint((T0371)A76.CB, (T0371)A105.CB) [> 4.2277 = 7.0461 < 9.1600] w=0.0407 to align # Constraint # added constraint: constraint((T0371)V251.CB, (T0371)E282.CB) [> 4.5599 = 7.5999 < 9.8799] w=0.0406 to align # Constraint # added constraint: constraint((T0371)L135.CB, (T0371)A180.CB) [> 3.3763 = 5.6272 < 7.3154] w=0.0404 to align # Constraint # added constraint: constraint((T0371)F72.CB, (T0371)I238.CB) [> 4.3821 = 7.3034 < 9.4945] w=0.0387 to align # Constraint # added constraint: constraint((T0371)P59.CB, (T0371)V136.CB) [> 4.1558 = 6.9263 < 9.0042] w=0.0357 to align # Constraint # added constraint: constraint((T0371)F143.CB, (T0371)T188.CB) [> 4.5672 = 7.6121 < 9.8957] w=0.0357 to align # Constraint # added constraint: constraint((T0371)L10.CB, (T0371)A249.CB) [> 4.5481 = 7.5801 < 9.8542] w=0.0357 to align # Constraint # added constraint: constraint((T0371)F143.CB, (T0371)E191.CB) [> 4.6468 = 7.7446 < 10.0680] w=0.0357 to align # Constraint # added constraint: constraint((T0371)M84.CB, (T0371)Y101.CB) [> 3.8316 = 6.3860 < 8.3018] w=0.0357 to align # Constraint # added constraint: constraint((T0371)P59.CB, (T0371)I98.CB) [> 3.6145 = 6.0241 < 7.8313] w=0.0357 to align # Constraint # added constraint: constraint((T0371)L10.CB, (T0371)D247.CB) [> 4.2519 = 7.0865 < 9.2125] w=0.0357 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)I275.CB) [> 4.5495 = 7.5826 < 9.8573] w=0.0357 to align # Constraint # added constraint: constraint((T0371)L9.CB, (T0371)L228.CB) [> 4.5798 = 7.6329 < 9.9228] w=0.0357 to align # Constraint # added constraint: constraint((T0371)T52.CB, (T0371)Y101.CB) [> 3.9968 = 6.6613 < 8.6597] w=0.0357 to align # Constraint # added constraint: constraint((T0371)A163.CB, (T0371)A180.CB) [> 3.5177 = 5.8629 < 7.6218] w=0.0357 to align # Constraint # added constraint: constraint((T0371)A163.CB, (T0371)V179.CB) [> 4.1784 = 6.9640 < 9.0531] w=0.0357 to align # Constraint # added constraint: constraint((T0371)P120.CB, (T0371)V136.CB) [> 3.5928 = 5.9880 < 7.7845] w=0.0357 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)L135.CB) [> 4.3110 = 7.1850 < 9.3405] w=0.0357 to align # Constraint # added constraint: constraint((T0371)L41.CB, (T0371)S58.CB) [> 3.9576 = 6.5961 < 8.5749] w=0.0357 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)F143.CB) [> 4.5600 = 7.6000 < 9.8800] w=0.0356 to align # Constraint # added constraint: constraint((T0371)Y49.CB, (T0371)D77.CB) [> 3.4731 = 5.7885 < 7.5251] w=0.0356 to align # Constraint # added constraint: constraint((T0371)F143.CB, (T0371)P173.CB) [> 3.9908 = 6.6514 < 8.6468] w=0.0336 to align # Constraint # added constraint: constraint((T0371)V121.CB, (T0371)L149.CB) [> 4.3313 = 7.2188 < 9.3844] w=0.0286 to align # Constraint # added constraint: constraint((T0371)D54.CB, (T0371)A166.CB) [> 4.7521 = 7.9202 < 10.2962] w=0.0286 to align # Constraint # added constraint: constraint((T0371)I161.CB, (T0371)L216.CB) [> 3.7034 = 6.1723 < 8.0240] w=0.0286 to align # Constraint # added constraint: constraint((T0371)L234.CB, (T0371)L252.CB) [> 4.6163 = 7.6937 < 10.0019] w=0.0286 to align # Constraint # added constraint: constraint((T0371)Y49.CB, (T0371)I98.CB) [> 3.0978 = 5.1631 < 6.7120] w=0.0286 to align # Constraint # added constraint: constraint((T0371)L135.CB, (T0371)A166.CB) [> 4.1142 = 6.8569 < 8.9140] w=0.0286 to align # Constraint # added constraint: constraint((T0371)I50.CB, (T0371)A76.CB) [> 3.6940 = 6.1567 < 8.0036] w=0.0286 to align # Constraint # added constraint: constraint((T0371)Y49.CB, (T0371)A76.CB) [> 3.2703 = 5.4504 < 7.0855] w=0.0286 to align # Constraint # added constraint: constraint((T0371)G195.CA, (T0371)L234.CB) [> 3.8879 = 6.4798 < 8.4237] w=0.0286 to align # Constraint # added constraint: constraint((T0371)P11.CB, (T0371)E226.CB) [> 4.4452 = 7.4087 < 9.6313] w=0.0286 to align # Constraint # added constraint: constraint((T0371)V121.CB, (T0371)V136.CB) [> 4.0394 = 6.7324 < 8.7521] w=0.0286 to align # Constraint # added constraint: constraint((T0371)F6.CB, (T0371)H274.CB) [> 3.1658 = 5.2764 < 6.8593] w=0.0286 to align # Constraint # added constraint: constraint((T0371)L41.CB, (T0371)G83.CA) [> 4.3094 = 7.1823 < 9.3370] w=0.0285 to align # Constraint # added constraint: constraint((T0371)V51.CB, (T0371)G231.CA) [> 4.7616 = 7.9360 < 10.3168] w=0.0214 to align # Constraint # added constraint: constraint((T0371)Y49.CB, (T0371)I227.CB) [> 4.5277 = 7.5462 < 9.8100] w=0.0214 to align # Constraint # added constraint: constraint((T0371)I129.CB, (T0371)R159.CB) [> 4.2178 = 7.0297 < 9.1386] w=0.0214 to align # Constraint # added constraint: constraint((T0371)T253.CB, (T0371)A279.CB) [> 3.9160 = 6.5266 < 8.4846] w=0.0214 to align # Constraint # added constraint: constraint((T0371)V251.CB, (T0371)A279.CB) [> 4.2276 = 7.0461 < 9.1599] w=0.0214 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)L216.CB) [> 4.6465 = 7.7442 < 10.0675] w=0.0214 to align # Constraint # added constraint: constraint((T0371)L135.CB, (T0371)K203.CB) [> 3.7284 = 6.2140 < 8.0782] w=0.0214 to align # Constraint # added constraint: constraint((T0371)L228.CB, (T0371)V251.CB) [> 3.8626 = 6.4377 < 8.3690] w=0.0214 to align # Constraint # added constraint: constraint((T0371)M229.CB, (T0371)V251.CB) [> 4.2014 = 7.0022 < 9.1029] w=0.0214 to align # Constraint # added constraint: constraint((T0371)V121.CB, (T0371)L135.CB) [> 3.6523 = 6.0871 < 7.9133] w=0.0214 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)L252.CB) [> 4.6891 = 7.8151 < 10.1596] w=0.0214 to align # Constraint # added constraint: constraint((T0371)I50.CB, (T0371)F72.CB) [> 3.7527 = 6.2545 < 8.1308] w=0.0214 to align # Constraint # added constraint: constraint((T0371)E226.CB, (T0371)T248.CB) [> 4.5566 = 7.5943 < 9.8726] w=0.0214 to align # Constraint # added constraint: constraint((T0371)L135.CB, (T0371)V165.CB) [> 3.8466 = 6.4109 < 8.3342] w=0.0214 to align # Constraint # added constraint: constraint((T0371)F6.CB, (T0371)A249.CB) [> 4.5448 = 7.5747 < 9.8471] w=0.0214 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)P59.CB) [> 4.1170 = 6.8617 < 8.9202] w=0.0214 to align # Constraint # added constraint: constraint((T0371)I50.CB, (T0371)P59.CB) [> 3.4671 = 5.7785 < 7.5121] w=0.0214 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)V230.CB) [> 3.1817 = 5.3028 < 6.8937] w=0.0214 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)G231.CA) [> 3.3479 = 5.5798 < 7.2538] w=0.0214 to align # Constraint # added constraint: constraint((T0371)A20.CB, (T0371)D232.CB) [> 3.2784 = 5.4640 < 7.1032] w=0.0214 to align # Constraint # added constraint: constraint((T0371)L10.CB, (T0371)L246.CB) [> 3.4514 = 5.7523 < 7.4781] w=0.0214 to align # Constraint # added constraint: constraint((T0371)V230.CB, (T0371)D247.CB) [> 4.5920 = 7.6534 < 9.9494] w=0.0214 to align # Constraint # added constraint: constraint((T0371)F72.CB, (T0371)K203.CB) [> 3.1969 = 5.3282 < 6.9266] w=0.0214 to align # Constraint # added constraint: constraint((T0371)V186.CB, (T0371)L239.CB) [> 3.4289 = 5.7149 < 7.4294] w=0.0213 to align # Constraint # added constraint: constraint((T0371)Y48.CB, (T0371)D77.CB) [> 4.1613 = 6.9355 < 9.0162] w=0.0213 to align # Constraint # added constraint: constraint((T0371)P59.CB, (T0371)L135.CB) [> 3.7415 = 6.2359 < 8.1067] w=0.0143 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)N167.CB) [> 4.7984 = 7.9973 < 10.3965] w=0.0143 to align # Constraint # added constraint: constraint((T0371)Y49.CB, (T0371)F72.CB) [> 4.2228 = 7.0380 < 9.1494] w=0.0143 to align # Constraint # added constraint: constraint((T0371)Y49.CB, (T0371)M208.CB) [> 4.7689 = 7.9481 < 10.3326] w=0.0143 to align # Constraint # added constraint: constraint((T0371)V136.CB, (T0371)M208.CB) [> 3.9502 = 6.5837 < 8.5588] w=0.0143 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)A279.CB) [> 2.8358 = 4.7263 < 6.1442] w=0.0143 to align # Constraint # added constraint: constraint((T0371)D232.CB, (T0371)A279.CB) [> 4.3752 = 7.2920 < 9.4796] w=0.0143 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)E191.CB) [> 4.7704 = 7.9506 < 10.3358] w=0.0143 to align # Constraint # added constraint: constraint((T0371)I227.CB, (T0371)A249.CB) [> 4.1828 = 6.9714 < 9.0628] w=0.0143 to align # Constraint # added constraint: constraint((T0371)F6.CB, (T0371)C276.CB) [> 4.4544 = 7.4240 < 9.6512] w=0.0143 to align # Constraint # added constraint: constraint((T0371)L9.CB, (T0371)H274.CB) [> 4.2453 = 7.0755 < 9.1982] w=0.0143 to align # Constraint # added constraint: constraint((T0371)P120.CB, (T0371)L135.CB) [> 4.0166 = 6.6943 < 8.7026] w=0.0143 to align # Constraint # added constraint: constraint((T0371)A166.CB, (T0371)L216.CB) [> 3.6674 = 6.1124 < 7.9461] w=0.0143 to align # Constraint # added constraint: constraint((T0371)K203.CB, (T0371)M229.CB) [> 4.7295 = 7.8825 < 10.2472] w=0.0143 to align # Constraint # added constraint: constraint((T0371)Y48.CB, (T0371)A76.CB) [> 3.9499 = 6.5832 < 8.5582] w=0.0143 to align # Constraint # added constraint: constraint((T0371)L9.CB, (T0371)E226.CB) [> 4.1640 = 6.9400 < 9.0220] w=0.0143 to align # Constraint # added constraint: constraint((T0371)L135.CB, (T0371)N167.CB) [> 3.0171 = 5.0286 < 6.5371] w=0.0143 to align # Constraint # added constraint: constraint((T0371)V121.CB, (T0371)A163.CB) [> 3.8177 = 6.3628 < 8.2717] w=0.0143 to align # Constraint # added constraint: constraint((T0371)F6.CB, (T0371)L250.CB) [> 4.5734 = 7.6223 < 9.9089] w=0.0143 to align # Constraint # added constraint: constraint((T0371)I3.CB, (T0371)H274.CB) [> 3.4733 = 5.7888 < 7.5254] w=0.0143 to align # Constraint # added constraint: constraint((T0371)I3.CB, (T0371)C276.CB) [> 4.1584 = 6.9307 < 9.0099] w=0.0143 to align # Constraint # added constraint: constraint((T0371)T52.CB, (T0371)K203.CB) [> 4.7078 = 7.8464 < 10.2003] w=0.0143 to align # Constraint # added constraint: constraint((T0371)V94.CB, (T0371)S192.CB) [> 4.3152 = 7.1919 < 9.3495] w=0.0142 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)M208.CB) [> 4.7614 = 7.9356 < 10.3163] w=0.0122 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)L250.CB) [> 4.5411 = 7.5685 < 9.8390] w=0.0101 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)P59.CB) [> 4.6122 = 7.6870 < 9.9931] w=0.0079 to align # Constraint # added constraint: constraint((T0371)F143.CB, (T0371)I275.CB) [> 4.2447 = 7.0745 < 9.1969] w=0.0071 to align # Constraint # added constraint: constraint((T0371)V121.CB, (T0371)R196.CB) [> 3.6497 = 6.0828 < 7.9077] w=0.0071 to align # Constraint # added constraint: constraint((T0371)L135.CB, (T0371)M208.CB) [> 4.6029 = 7.6715 < 9.9729] w=0.0071 to align # Constraint # added constraint: constraint((T0371)R159.CB, (T0371)M208.CB) [> 4.3610 = 7.2683 < 9.4488] w=0.0071 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)V136.CB) [> 4.7781 = 7.9635 < 10.3526] w=0.0071 to align # Constraint # added constraint: constraint((T0371)V136.CB, (T0371)A163.CB) [> 4.7499 = 7.9166 < 10.2915] w=0.0071 to align # Constraint # added constraint: constraint((T0371)P59.CB, (T0371)N167.CB) [> 4.7026 = 7.8377 < 10.1890] w=0.0071 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)V51.CB) [> 4.3349 = 7.2249 < 9.3923] w=0.0071 to align # Constraint # added constraint: constraint((T0371)I16.CB, (T0371)I50.CB) [> 3.2687 = 5.4479 < 7.0823] w=0.0071 to align # Constraint # added constraint: constraint((T0371)C15.CB, (T0371)V51.CB) [> 4.3314 = 7.2190 < 9.3847] w=0.0071 to align # Constraint # added constraint: constraint((T0371)D19.CB, (T0371)M208.CB) [> 4.1093 = 6.8489 < 8.9035] w=0.0071 to align # Constraint # added constraint: constraint((T0371)V136.CB, (T0371)N167.CB) [> 4.5845 = 7.6409 < 9.9332] w=0.0071 to align # Constraint # added constraint: constraint((T0371)I3.CB, (T0371)L250.CB) [> 4.2549 = 7.0916 < 9.2190] w=0.0071 to align # Constraint # added constraint: constraint((T0371)F21.CB, (T0371)G231.CA) [> 4.1420 = 6.9033 < 8.9743] w=0.0070 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)L239.CB) [> 4.0054 = 6.6756 < 8.6783] w=0.0070 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)D232.CB) [> 4.5031 = 7.5052 < 9.7567] w=0.0070 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)G231.CA) [> 2.9093 = 4.8488 < 6.3034] w=0.0070 to align # Constraint # added constraint: constraint((T0371)F143.CB, (T0371)D232.CB) [> 4.6791 = 7.7985 < 10.1381] w=0.0070 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)V230.CB) [> 4.3057 = 7.1761 < 9.3289] w=0.0070 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)M229.CB) [> 4.2319 = 7.0532 < 9.1692] w=0.0070 to align # Constraint # added constraint: constraint((T0371)N167.CB, (T0371)L216.CB) [> 4.7375 = 7.8958 < 10.2645] w=0.0070 to align # Constraint # added constraint: constraint((T0371)A166.CB, (T0371)G231.CA) [> 4.2869 = 7.1449 < 9.2883] w=0.0070 to align # Constraint # added constraint: constraint((T0371)A166.CB, (T0371)V230.CB) [> 3.3432 = 5.5720 < 7.2436] w=0.0070 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)V230.CB) [> 4.1121 = 6.8535 < 8.9095] w=0.0070 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)L228.CB) [> 4.3335 = 7.2225 < 9.3892] w=0.0070 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)I227.CB) [> 3.0077 = 5.0128 < 6.5167] w=0.0070 to align # Constraint # added constraint: constraint((T0371)V165.CB, (T0371)L216.CB) [> 4.7893 = 7.9821 < 10.3768] w=0.0070 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)T248.CB) [> 4.4054 = 7.3424 < 9.5451] w=0.0070 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)V230.CB) [> 3.5655 = 5.9425 < 7.7253] w=0.0070 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)M229.CB) [> 4.2702 = 7.1170 < 9.2522] w=0.0070 to align # Constraint # added constraint: constraint((T0371)I164.CB, (T0371)L228.CB) [> 1.9889 = 3.3149 < 4.3093] w=0.0070 to align # Constraint # added constraint: constraint((T0371)A163.CB, (T0371)L228.CB) [> 4.3198 = 7.1998 < 9.3597] w=0.0070 to align # Constraint # added constraint: constraint((T0371)A163.CB, (T0371)I227.CB) [> 2.7046 = 4.5076 < 5.8599] w=0.0070 to align # Constraint # added constraint: constraint((T0371)F18.CB, (T0371)V251.CB) [> 4.4451 = 7.4085 < 9.6310] w=0.0021 to align # Constraint # added constraint: constraint((T0371)G22.CA, (T0371)P59.CB) [> 4.5720 = 7.6200 < 9.9060] w=0.0007 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0371/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0371/decoys/ # ReadConformPDB reading from PDB file T0371.chimera.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file chimera-14-12.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 Skipped atom 86, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 87, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 120, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 133, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 806, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 811, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 944, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 969, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 66, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 68, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 70, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 72, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 182, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 184, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 186, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 188, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 254, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 256, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 258, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 260, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 418, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 420, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 422, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 424, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 1026, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 1028, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 1030, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 1032, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 167, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 320, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 329, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 358, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 531, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 696, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 Skipped atom 86, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 87, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 120, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 133, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 794, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 799, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 932, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 Skipped atom 66, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 68, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 70, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 72, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 182, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 184, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 186, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 188, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 414, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 416, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 418, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 420, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 1022, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 1024, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 1026, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 1028, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 250 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Skipped atom 63, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 548, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 265 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 Skipped atom 79, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 80, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 113, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 126, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 791, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 796, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 921, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 946, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0371)T52.O and (T0371)N53.N only 0.000 apart, marking (T0371)N53.N as missing # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0371)G231.O and (T0371)D232.N only 0.000 apart, marking (T0371)D232.N as missing # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0371)L228.O and (T0371)M229.N only 0.000 apart, marking (T0371)M229.N as missing # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0371)F72.CA and (T0371)I116.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.O and (T0371)I116.O only 0.000 apart, marking (T0371)I116.O as missing WARNING: atoms too close: (T0371)F72.C and (T0371)I116.C only 0.000 apart, marking (T0371)I116.C as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)K117.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)K117.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.O and (T0371)K117.O only 0.000 apart, marking (T0371)K117.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)K117.O only 0.000 apart, marking (T0371)K117.O as missing WARNING: atoms too close: (T0371)I116.C and (T0371)K117.C only 0.000 apart, marking (T0371)K117.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)K117.C only 0.000 apart, marking (T0371)K117.C as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)M118.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)M118.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)M118.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.O and (T0371)M118.O only 0.000 apart, marking (T0371)M118.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)M118.O only 0.000 apart, marking (T0371)M118.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)M118.O only 0.000 apart, marking (T0371)M118.O as missing WARNING: atoms too close: (T0371)K117.C and (T0371)M118.C only 0.000 apart, marking (T0371)M118.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)M118.C only 0.000 apart, marking (T0371)M118.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)M118.C only 0.000 apart, marking (T0371)M118.C as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)L119.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)L119.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)L119.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)L119.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.O and (T0371)L119.O only 0.000 apart, marking (T0371)L119.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)L119.O only 0.000 apart, marking (T0371)L119.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)L119.O only 0.000 apart, marking (T0371)L119.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)L119.O only 0.000 apart, marking (T0371)L119.O as missing WARNING: atoms too close: (T0371)M118.C and (T0371)L119.C only 0.000 apart, marking (T0371)L119.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)L119.C only 0.000 apart, marking (T0371)L119.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)L119.C only 0.000 apart, marking (T0371)L119.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)L119.C only 0.000 apart, marking (T0371)L119.C as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)P120.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)P120.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)P120.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)P120.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)P120.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.O and (T0371)P120.O only 0.000 apart, marking (T0371)P120.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)P120.O only 0.000 apart, marking (T0371)P120.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)P120.O only 0.000 apart, marking (T0371)P120.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)P120.O only 0.000 apart, marking (T0371)P120.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)P120.O only 0.000 apart, marking (T0371)P120.O as missing WARNING: atoms too close: (T0371)L119.C and (T0371)P120.C only 0.000 apart, marking (T0371)P120.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)P120.C only 0.000 apart, marking (T0371)P120.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)P120.C only 0.000 apart, marking (T0371)P120.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)P120.C only 0.000 apart, marking (T0371)P120.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)P120.C only 0.000 apart, marking (T0371)P120.C as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)V121.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)V121.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)V121.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)V121.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)V121.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)V121.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.O and (T0371)V121.O only 0.000 apart, marking (T0371)V121.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)V121.O only 0.000 apart, marking (T0371)V121.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)V121.O only 0.000 apart, marking (T0371)V121.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)V121.O only 0.000 apart, marking (T0371)V121.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)V121.O only 0.000 apart, marking (T0371)V121.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)V121.O only 0.000 apart, marking (T0371)V121.O as missing WARNING: atoms too close: (T0371)P120.C and (T0371)V121.C only 0.000 apart, marking (T0371)V121.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)V121.C only 0.000 apart, marking (T0371)V121.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)V121.C only 0.000 apart, marking (T0371)V121.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)V121.C only 0.000 apart, marking (T0371)V121.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)V121.C only 0.000 apart, marking (T0371)V121.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)V121.C only 0.000 apart, marking (T0371)V121.C as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)I129.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)I129.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)I129.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)I129.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)I129.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)I129.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)I129.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.O and (T0371)I129.O only 0.000 apart, marking (T0371)I129.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)I129.O only 0.000 apart, marking (T0371)I129.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)I129.O only 0.000 apart, marking (T0371)I129.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)I129.O only 0.000 apart, marking (T0371)I129.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)I129.O only 0.000 apart, marking (T0371)I129.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)I129.O only 0.000 apart, marking (T0371)I129.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)I129.O only 0.000 apart, marking (T0371)I129.O as missing WARNING: atoms too close: (T0371)V121.C and (T0371)I129.C only 0.000 apart, marking (T0371)I129.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)I129.C only 0.000 apart, marking (T0371)I129.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)I129.C only 0.000 apart, marking (T0371)I129.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)I129.C only 0.000 apart, marking (T0371)I129.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)I129.C only 0.000 apart, marking (T0371)I129.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)I129.C only 0.000 apart, marking (T0371)I129.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)I129.C only 0.000 apart, marking (T0371)I129.C as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)I129.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)G130.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)E131.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)W145.CA as missing WARNING: atoms too close: (T0371)E131.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)G130.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)E131.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)G130.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)W145.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)W145.CA as missing WARNING: atoms too close: (T0371)E131.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)P162.CA as missing WARNING: atoms too close: (T0371)W145.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)E131.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)G130.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)W145.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)E131.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)G130.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)P162.CA and (T0371)L174.CA only 0.000 apart, marking (T0371)P162.CA as missing WARNING: atoms too close: (T0371)W145.CA and (T0371)L174.CA only 0.000 apart, marking (T0371)W145.CA as missing WARNING: atoms too close: (T0371)E131.CA and (T0371)L174.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)L174.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)L174.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)L174.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)L174.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)L174.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)L174.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)L174.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)L174.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)L174.CA only 0.000 apart, marking (T0371)L174.CA as missing WARNING: atoms too close: (T0371)P162.O and (T0371)L174.O only 0.000 apart, marking (T0371)L174.O as missing WARNING: atoms too close: (T0371)W145.O and (T0371)L174.O only 0.000 apart, marking (T0371)L174.O as missing WARNING: atoms too close: (T0371)E131.O and (T0371)L174.O only 0.000 apart, marking (T0371)L174.O as missing WARNING: atoms too close: (T0371)G130.O and (T0371)L174.O only 0.000 apart, marking (T0371)L174.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)L174.O only 0.000 apart, marking (T0371)L174.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)L174.O only 0.000 apart, marking (T0371)L174.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)L174.O only 0.000 apart, marking (T0371)L174.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)L174.O only 0.000 apart, marking (T0371)L174.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)L174.O only 0.000 apart, marking (T0371)L174.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)L174.O only 0.000 apart, marking (T0371)L174.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)L174.O only 0.000 apart, marking (T0371)L174.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)L174.O only 0.000 apart, marking (T0371)L174.O as missing WARNING: atoms too close: (T0371)P162.C and (T0371)L174.C only 0.000 apart, marking (T0371)L174.C as missing WARNING: atoms too close: (T0371)W145.C and (T0371)L174.C only 0.000 apart, marking (T0371)L174.C as missing WARNING: atoms too close: (T0371)E131.C and (T0371)L174.C only 0.000 apart, marking (T0371)L174.C as missing WARNING: atoms too close: (T0371)G130.C and (T0371)L174.C only 0.000 apart, marking (T0371)L174.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)L174.C only 0.000 apart, marking (T0371)L174.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)L174.C only 0.000 apart, marking (T0371)L174.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)L174.C only 0.000 apart, marking (T0371)L174.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)L174.C only 0.000 apart, marking (T0371)L174.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)L174.C only 0.000 apart, marking (T0371)L174.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)L174.C only 0.000 apart, marking (T0371)L174.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)L174.C only 0.000 apart, marking (T0371)L174.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)L174.C only 0.000 apart, marking (T0371)L174.C as missing WARNING: atoms too close: (T0371)L174.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)L174.CA as missing WARNING: atoms too close: (T0371)P162.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)P162.CA as missing WARNING: atoms too close: (T0371)W145.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)W145.CA as missing WARNING: atoms too close: (T0371)E131.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)F209.CA as missing WARNING: atoms too close: (T0371)L174.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)P162.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)W145.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)E131.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)G130.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)L174.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)P162.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)W145.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)E131.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)G130.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)F209.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)F209.CA as missing WARNING: atoms too close: (T0371)L174.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)L174.CA as missing WARNING: atoms too close: (T0371)P162.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)P162.CA as missing WARNING: atoms too close: (T0371)W145.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)W145.CA as missing WARNING: atoms too close: (T0371)E131.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)M210.CA as missing WARNING: atoms too close: (T0371)F209.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)L174.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)P162.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)W145.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)E131.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)G130.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)F209.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)L174.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)P162.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)W145.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)E131.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)G130.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)M210.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)M210.CA as missing WARNING: atoms too close: (T0371)F209.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)F209.CA as missing WARNING: atoms too close: (T0371)L174.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)L174.CA as missing WARNING: atoms too close: (T0371)P162.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)P162.CA as missing WARNING: atoms too close: (T0371)W145.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)W145.CA as missing WARNING: atoms too close: (T0371)E131.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)F211.CA only 0.000 apart, marking (T0371)F211.CA as missing WARNING: atoms too close: (T0371)M210.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)F209.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)L174.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)P162.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)W145.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)E131.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)G130.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)F211.O only 0.000 apart, marking (T0371)F211.O as missing WARNING: atoms too close: (T0371)M210.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)F209.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)L174.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)P162.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)W145.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)E131.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)G130.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)F211.C only 0.000 apart, marking (T0371)F211.C as missing WARNING: atoms too close: (T0371)F211.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)F211.CA as missing WARNING: atoms too close: (T0371)M210.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)M210.CA as missing WARNING: atoms too close: (T0371)F209.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)F209.CA as missing WARNING: atoms too close: (T0371)L174.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)L174.CA as missing WARNING: atoms too close: (T0371)P162.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)P162.CA as missing WARNING: atoms too close: (T0371)W145.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)W145.CA as missing WARNING: atoms too close: (T0371)E131.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)A212.CA only 0.000 apart, marking (T0371)A212.CA as missing WARNING: atoms too close: (T0371)F211.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)M210.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)F209.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)L174.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)P162.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)W145.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)E131.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)G130.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)A212.O only 0.000 apart, marking (T0371)A212.O as missing WARNING: atoms too close: (T0371)F211.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)M210.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)F209.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)L174.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)P162.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)W145.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)E131.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)G130.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)A212.C only 0.000 apart, marking (T0371)A212.C as missing # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/panther3_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0371)F72.CA and (T0371)I116.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.O and (T0371)I116.O only 0.000 apart, marking (T0371)I116.O as missing WARNING: atoms too close: (T0371)F72.C and (T0371)I116.C only 0.000 apart, marking (T0371)I116.C as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)K117.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)K117.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.O and (T0371)K117.O only 0.000 apart, marking (T0371)K117.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)K117.O only 0.000 apart, marking (T0371)K117.O as missing WARNING: atoms too close: (T0371)I116.C and (T0371)K117.C only 0.000 apart, marking (T0371)K117.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)K117.C only 0.000 apart, marking (T0371)K117.C as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)M118.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)M118.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)M118.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.O and (T0371)M118.O only 0.000 apart, marking (T0371)M118.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)M118.O only 0.000 apart, marking (T0371)M118.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)M118.O only 0.000 apart, marking (T0371)M118.O as missing WARNING: atoms too close: (T0371)K117.C and (T0371)M118.C only 0.000 apart, marking (T0371)M118.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)M118.C only 0.000 apart, marking (T0371)M118.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)M118.C only 0.000 apart, marking (T0371)M118.C as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)L119.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)L119.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)L119.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)L119.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.O and (T0371)L119.O only 0.000 apart, marking (T0371)L119.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)L119.O only 0.000 apart, marking (T0371)L119.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)L119.O only 0.000 apart, marking (T0371)L119.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)L119.O only 0.000 apart, marking (T0371)L119.O as missing WARNING: atoms too close: (T0371)M118.C and (T0371)L119.C only 0.000 apart, marking (T0371)L119.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)L119.C only 0.000 apart, marking (T0371)L119.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)L119.C only 0.000 apart, marking (T0371)L119.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)L119.C only 0.000 apart, marking (T0371)L119.C as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)P120.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)P120.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)P120.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)P120.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)P120.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.O and (T0371)P120.O only 0.000 apart, marking (T0371)P120.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)P120.O only 0.000 apart, marking (T0371)P120.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)P120.O only 0.000 apart, marking (T0371)P120.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)P120.O only 0.000 apart, marking (T0371)P120.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)P120.O only 0.000 apart, marking (T0371)P120.O as missing WARNING: atoms too close: (T0371)L119.C and (T0371)P120.C only 0.000 apart, marking (T0371)P120.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)P120.C only 0.000 apart, marking (T0371)P120.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)P120.C only 0.000 apart, marking (T0371)P120.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)P120.C only 0.000 apart, marking (T0371)P120.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)P120.C only 0.000 apart, marking (T0371)P120.C as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)V121.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)V121.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)V121.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)V121.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)V121.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)V121.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.O and (T0371)V121.O only 0.000 apart, marking (T0371)V121.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)V121.O only 0.000 apart, marking (T0371)V121.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)V121.O only 0.000 apart, marking (T0371)V121.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)V121.O only 0.000 apart, marking (T0371)V121.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)V121.O only 0.000 apart, marking (T0371)V121.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)V121.O only 0.000 apart, marking (T0371)V121.O as missing WARNING: atoms too close: (T0371)P120.C and (T0371)V121.C only 0.000 apart, marking (T0371)V121.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)V121.C only 0.000 apart, marking (T0371)V121.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)V121.C only 0.000 apart, marking (T0371)V121.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)V121.C only 0.000 apart, marking (T0371)V121.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)V121.C only 0.000 apart, marking (T0371)V121.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)V121.C only 0.000 apart, marking (T0371)V121.C as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)I129.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)I129.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)I129.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)I129.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)I129.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)I129.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)I129.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.O and (T0371)I129.O only 0.000 apart, marking (T0371)I129.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)I129.O only 0.000 apart, marking (T0371)I129.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)I129.O only 0.000 apart, marking (T0371)I129.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)I129.O only 0.000 apart, marking (T0371)I129.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)I129.O only 0.000 apart, marking (T0371)I129.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)I129.O only 0.000 apart, marking (T0371)I129.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)I129.O only 0.000 apart, marking (T0371)I129.O as missing WARNING: atoms too close: (T0371)V121.C and (T0371)I129.C only 0.000 apart, marking (T0371)I129.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)I129.C only 0.000 apart, marking (T0371)I129.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)I129.C only 0.000 apart, marking (T0371)I129.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)I129.C only 0.000 apart, marking (T0371)I129.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)I129.C only 0.000 apart, marking (T0371)I129.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)I129.C only 0.000 apart, marking (T0371)I129.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)I129.C only 0.000 apart, marking (T0371)I129.C as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)G130.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)G130.O only 0.000 apart, marking (T0371)G130.O as missing WARNING: atoms too close: (T0371)I129.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)G130.C only 0.000 apart, marking (T0371)G130.C as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)E131.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)E131.O only 0.000 apart, marking (T0371)E131.O as missing WARNING: atoms too close: (T0371)G130.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)E131.C only 0.000 apart, marking (T0371)E131.C as missing WARNING: atoms too close: (T0371)E131.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)W145.CA only 0.000 apart, marking (T0371)W145.CA as missing WARNING: atoms too close: (T0371)E131.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)G130.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)W145.O only 0.000 apart, marking (T0371)W145.O as missing WARNING: atoms too close: (T0371)E131.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)G130.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)W145.C only 0.000 apart, marking (T0371)W145.C as missing WARNING: atoms too close: (T0371)W145.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)W145.CA as missing WARNING: atoms too close: (T0371)E131.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)P162.CA only 0.000 apart, marking (T0371)P162.CA as missing WARNING: atoms too close: (T0371)W145.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)E131.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)G130.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)P162.O only 0.000 apart, marking (T0371)P162.O as missing WARNING: atoms too close: (T0371)W145.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)E131.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)G130.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)P162.C only 0.000 apart, marking (T0371)P162.C as missing WARNING: atoms too close: (T0371)P162.CA and (T0371)I183.CA only 0.000 apart, marking (T0371)P162.CA as missing WARNING: atoms too close: (T0371)W145.CA and (T0371)I183.CA only 0.000 apart, marking (T0371)W145.CA as missing WARNING: atoms too close: (T0371)E131.CA and (T0371)I183.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)I183.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)I183.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)I183.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)I183.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)I183.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)I183.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)I183.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)I183.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)I183.CA only 0.000 apart, marking (T0371)I183.CA as missing WARNING: atoms too close: (T0371)P162.O and (T0371)I183.O only 0.000 apart, marking (T0371)I183.O as missing WARNING: atoms too close: (T0371)W145.O and (T0371)I183.O only 0.000 apart, marking (T0371)I183.O as missing WARNING: atoms too close: (T0371)E131.O and (T0371)I183.O only 0.000 apart, marking (T0371)I183.O as missing WARNING: atoms too close: (T0371)G130.O and (T0371)I183.O only 0.000 apart, marking (T0371)I183.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)I183.O only 0.000 apart, marking (T0371)I183.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)I183.O only 0.000 apart, marking (T0371)I183.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)I183.O only 0.000 apart, marking (T0371)I183.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)I183.O only 0.000 apart, marking (T0371)I183.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)I183.O only 0.000 apart, marking (T0371)I183.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)I183.O only 0.000 apart, marking (T0371)I183.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)I183.O only 0.000 apart, marking (T0371)I183.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)I183.O only 0.000 apart, marking (T0371)I183.O as missing WARNING: atoms too close: (T0371)P162.C and (T0371)I183.C only 0.000 apart, marking (T0371)I183.C as missing WARNING: atoms too close: (T0371)W145.C and (T0371)I183.C only 0.000 apart, marking (T0371)I183.C as missing WARNING: atoms too close: (T0371)E131.C and (T0371)I183.C only 0.000 apart, marking (T0371)I183.C as missing WARNING: atoms too close: (T0371)G130.C and (T0371)I183.C only 0.000 apart, marking (T0371)I183.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)I183.C only 0.000 apart, marking (T0371)I183.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)I183.C only 0.000 apart, marking (T0371)I183.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)I183.C only 0.000 apart, marking (T0371)I183.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)I183.C only 0.000 apart, marking (T0371)I183.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)I183.C only 0.000 apart, marking (T0371)I183.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)I183.C only 0.000 apart, marking (T0371)I183.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)I183.C only 0.000 apart, marking (T0371)I183.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)I183.C only 0.000 apart, marking (T0371)I183.C as missing WARNING: atoms too close: (T0371)I183.CA and (T0371)Q207.CA only 0.000 apart, marking (T0371)I183.CA as missing WARNING: atoms too close: (T0371)P162.CA and (T0371)Q207.CA only 0.000 apart, marking (T0371)P162.CA as missing WARNING: atoms too close: (T0371)W145.CA and (T0371)Q207.CA only 0.000 apart, marking (T0371)W145.CA as missing WARNING: atoms too close: (T0371)E131.CA and (T0371)Q207.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)Q207.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)Q207.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)Q207.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)Q207.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)Q207.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)Q207.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)Q207.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)Q207.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)Q207.CA only 0.000 apart, marking (T0371)Q207.CA as missing WARNING: atoms too close: (T0371)I183.O and (T0371)Q207.O only 0.000 apart, marking (T0371)Q207.O as missing WARNING: atoms too close: (T0371)P162.O and (T0371)Q207.O only 0.000 apart, marking (T0371)Q207.O as missing WARNING: atoms too close: (T0371)W145.O and (T0371)Q207.O only 0.000 apart, marking (T0371)Q207.O as missing WARNING: atoms too close: (T0371)E131.O and (T0371)Q207.O only 0.000 apart, marking (T0371)Q207.O as missing WARNING: atoms too close: (T0371)G130.O and (T0371)Q207.O only 0.000 apart, marking (T0371)Q207.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)Q207.O only 0.000 apart, marking (T0371)Q207.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)Q207.O only 0.000 apart, marking (T0371)Q207.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)Q207.O only 0.000 apart, marking (T0371)Q207.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)Q207.O only 0.000 apart, marking (T0371)Q207.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)Q207.O only 0.000 apart, marking (T0371)Q207.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)Q207.O only 0.000 apart, marking (T0371)Q207.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)Q207.O only 0.000 apart, marking (T0371)Q207.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)Q207.O only 0.000 apart, marking (T0371)Q207.O as missing WARNING: atoms too close: (T0371)I183.C and (T0371)Q207.C only 0.000 apart, marking (T0371)Q207.C as missing WARNING: atoms too close: (T0371)P162.C and (T0371)Q207.C only 0.000 apart, marking (T0371)Q207.C as missing WARNING: atoms too close: (T0371)W145.C and (T0371)Q207.C only 0.000 apart, marking (T0371)Q207.C as missing WARNING: atoms too close: (T0371)E131.C and (T0371)Q207.C only 0.000 apart, marking (T0371)Q207.C as missing WARNING: atoms too close: (T0371)G130.C and (T0371)Q207.C only 0.000 apart, marking (T0371)Q207.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)Q207.C only 0.000 apart, marking (T0371)Q207.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)Q207.C only 0.000 apart, marking (T0371)Q207.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)Q207.C only 0.000 apart, marking (T0371)Q207.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)Q207.C only 0.000 apart, marking (T0371)Q207.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)Q207.C only 0.000 apart, marking (T0371)Q207.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)Q207.C only 0.000 apart, marking (T0371)Q207.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)Q207.C only 0.000 apart, marking (T0371)Q207.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)Q207.C only 0.000 apart, marking (T0371)Q207.C as missing WARNING: atoms too close: (T0371)Q207.CA and (T0371)M208.CA only 0.000 apart, marking (T0371)Q207.CA as missing WARNING: atoms too close: (T0371)I183.CA and (T0371)M208.CA only 0.000 apart, marking (T0371)I183.CA as missing WARNING: atoms too close: (T0371)P162.CA and (T0371)M208.CA only 0.000 apart, marking (T0371)P162.CA as missing WARNING: atoms too close: (T0371)W145.CA and (T0371)M208.CA only 0.000 apart, marking (T0371)W145.CA as missing WARNING: atoms too close: (T0371)E131.CA and (T0371)M208.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)M208.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)M208.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)M208.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)M208.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)M208.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)M208.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)M208.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)M208.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)M208.CA only 0.000 apart, marking (T0371)M208.CA as missing WARNING: atoms too close: (T0371)Q207.O and (T0371)M208.O only 0.000 apart, marking (T0371)M208.O as missing WARNING: atoms too close: (T0371)I183.O and (T0371)M208.O only 0.000 apart, marking (T0371)M208.O as missing WARNING: atoms too close: (T0371)P162.O and (T0371)M208.O only 0.000 apart, marking (T0371)M208.O as missing WARNING: atoms too close: (T0371)W145.O and (T0371)M208.O only 0.000 apart, marking (T0371)M208.O as missing WARNING: atoms too close: (T0371)E131.O and (T0371)M208.O only 0.000 apart, marking (T0371)M208.O as missing WARNING: atoms too close: (T0371)G130.O and (T0371)M208.O only 0.000 apart, marking (T0371)M208.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)M208.O only 0.000 apart, marking (T0371)M208.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)M208.O only 0.000 apart, marking (T0371)M208.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)M208.O only 0.000 apart, marking (T0371)M208.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)M208.O only 0.000 apart, marking (T0371)M208.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)M208.O only 0.000 apart, marking (T0371)M208.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)M208.O only 0.000 apart, marking (T0371)M208.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)M208.O only 0.000 apart, marking (T0371)M208.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)M208.O only 0.000 apart, marking (T0371)M208.O as missing WARNING: atoms too close: (T0371)Q207.C and (T0371)M208.C only 0.000 apart, marking (T0371)M208.C as missing WARNING: atoms too close: (T0371)I183.C and (T0371)M208.C only 0.000 apart, marking (T0371)M208.C as missing WARNING: atoms too close: (T0371)P162.C and (T0371)M208.C only 0.000 apart, marking (T0371)M208.C as missing WARNING: atoms too close: (T0371)W145.C and (T0371)M208.C only 0.000 apart, marking (T0371)M208.C as missing WARNING: atoms too close: (T0371)E131.C and (T0371)M208.C only 0.000 apart, marking (T0371)M208.C as missing WARNING: atoms too close: (T0371)G130.C and (T0371)M208.C only 0.000 apart, marking (T0371)M208.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)M208.C only 0.000 apart, marking (T0371)M208.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)M208.C only 0.000 apart, marking (T0371)M208.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)M208.C only 0.000 apart, marking (T0371)M208.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)M208.C only 0.000 apart, marking (T0371)M208.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)M208.C only 0.000 apart, marking (T0371)M208.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)M208.C only 0.000 apart, marking (T0371)M208.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)M208.C only 0.000 apart, marking (T0371)M208.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)M208.C only 0.000 apart, marking (T0371)M208.C as missing WARNING: atoms too close: (T0371)E131.N and (T0371)F209.N only 0.000 apart, marking (T0371)E131.N as missing WARNING: atoms too close: (T0371)M208.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)M208.CA as missing WARNING: atoms too close: (T0371)Q207.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)Q207.CA as missing WARNING: atoms too close: (T0371)I183.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)I183.CA as missing WARNING: atoms too close: (T0371)P162.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)P162.CA as missing WARNING: atoms too close: (T0371)W145.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)W145.CA as missing WARNING: atoms too close: (T0371)E131.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)F209.CA only 0.000 apart, marking (T0371)F209.CA as missing WARNING: atoms too close: (T0371)M208.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)Q207.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)I183.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)P162.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)W145.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)E131.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)G130.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)F209.O only 0.000 apart, marking (T0371)F209.O as missing WARNING: atoms too close: (T0371)M208.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)Q207.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)I183.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)P162.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)W145.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)E131.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)G130.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)F209.C only 0.000 apart, marking (T0371)F209.C as missing WARNING: atoms too close: (T0371)F209.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)F209.CA as missing WARNING: atoms too close: (T0371)M208.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)M208.CA as missing WARNING: atoms too close: (T0371)Q207.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)Q207.CA as missing WARNING: atoms too close: (T0371)I183.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)I183.CA as missing WARNING: atoms too close: (T0371)P162.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)P162.CA as missing WARNING: atoms too close: (T0371)W145.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)W145.CA as missing WARNING: atoms too close: (T0371)E131.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)E131.CA as missing WARNING: atoms too close: (T0371)G130.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)G130.CA as missing WARNING: atoms too close: (T0371)I129.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)I129.CA as missing WARNING: atoms too close: (T0371)V121.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)V121.CA as missing WARNING: atoms too close: (T0371)P120.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)P120.CA as missing WARNING: atoms too close: (T0371)L119.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)L119.CA as missing WARNING: atoms too close: (T0371)M118.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)M118.CA as missing WARNING: atoms too close: (T0371)K117.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)K117.CA as missing WARNING: atoms too close: (T0371)I116.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)I116.CA as missing WARNING: atoms too close: (T0371)F72.CA and (T0371)M210.CA only 0.000 apart, marking (T0371)M210.CA as missing WARNING: atoms too close: (T0371)F209.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)M208.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)Q207.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)I183.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)P162.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)W145.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)E131.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)G130.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)I129.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)V121.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)P120.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)L119.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)M118.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)K117.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)I116.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)F72.O and (T0371)M210.O only 0.000 apart, marking (T0371)M210.O as missing WARNING: atoms too close: (T0371)F209.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)M208.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)Q207.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)I183.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)P162.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)W145.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)E131.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)G130.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)I129.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)V121.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)P120.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)L119.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)M118.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)K117.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)I116.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing WARNING: atoms too close: (T0371)F72.C and (T0371)M210.C only 0.000 apart, marking (T0371)M210.C as missing # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation panther3_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0371 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 0.4032 model score 0.4496 model score 0.6329 model score 0.4442 model score 0.6318 model score 0.4465 model score 0.4389 model score 0.4450 model score 0.4947 model score 0.4890 model score 0.4290 model score 0.5112 model score 0.5254 model score 0.5159 model score 0.5793 model score 0.4632 model score 0.4247 model score 0.3014 model score 0.3138 model score 0.3414 model score 0.3452 model score 0.2982 model score 2.0025 model score 1.8087 model score 1.8206 model score 1.9438 model score 1.9802 model score 0.3424 model score 0.3145 model score 0.4657 model score 0.3928 model score 0.3616 model score 0.5906 model score 0.3895 model score 0.3701 model score 0.3716 model score 0.4061 model score 0.3991 model score 0.5840 model score 0.2795 model score 0.3552 model score 0.3221 model score 0.3178 model score 0.3337 model score 1.2745 model score 1.2794 model score 1.2699 model score 1.2698 model score 1.2806 model score 0.3208 model score 0.3431 model score 0.3591 model score 0.3944 model score 0.2911 model score 0.3074 model score 0.3701 model score 0.3716 model score 0.3959 model score 0.4061 model score 0.3138 model score 0.3414 model score 0.3060 model score 0.3452 model score 0.2790 model score 1.2656 model score 1.2706 model score 1.2711 model score 1.2724 model score 1.2722 model score 1.2656 model score 1.2706 model score 1.2706 model score 1.2711 model score 1.2724 model score 2.2434 model score 2.1358 model score 2.3151 model score 2.3232 model score 2.3836 model score 0.6319 model score 0.6440 model score 0.8019 model score 0.4858 model score 1.2320 model score 1.2650 model score 1.2683 model score 1.2755 model score 1.2649 model score 1.2759 model score 0.3598 model score 0.3959 model score 0.3558 model score 0.3561 model score 0.3542 model score 1.1361 model score 1.1456 model score 0.3330 model score 0.4347 model score 0.3286 model score 0.3195 model score 0.4105 model score 0.4203 model score 0.3160 model score 0.3282 model score 0.3647 model score 0.2925 model score 0.2667 model score 0.3315 model score 0.3944 model score 0.4228 model score 0.3876 model score 0.3584 model score 0.4123 model score 0.6399 model score 1.2771 model score 0.2639 model score 0.2924 model score 0.3414 model score 0.3248 model score 0.3664 model score 0.2924 model score 0.2484 model score 0.3414 model score 0.3664 model score 0.3249 model score 0.3472 model score 0.2664 model score 0.2915 model score 0.2436 model score 0.2442 model score 0.4194 model score 0.5259 model score 0.5220 model score 0.5258 model score 0.5343 model score 0.4202 model score 0.5239 model score 0.5281 model score 0.3810 model score 0.3557 model score 0.3995 model score 0.3115 model score 0.3279 model score 0.3179 model score 0.3266 model score 0.3045 model score 0.3679 model score 0.3849 model score 0.3440 model score 0.3438 model score 0.3444 model score 0.3546 model score 0.3002 model score 0.2911 model score 0.3488 model score 0.3479 model score 0.3115 model score 0.3418 model score 0.3005 model score 0.4475 model score 0.3603 model score 0.2851 model score 0.4341 model score 0.4359 model score 0.4999 model score 0.6663 model score 0.3425 model score 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USE_META, weight: 0.7924 cost: 0.6959 min: 0.1747 max: 2.4345 USE_META, weight: 0.9487 cost: 0.3035 min: 0.1747 max: 2.4345 USE_META, weight: 0.8177 cost: 0.6324 min: 0.1747 max: 2.4345 USE_META, weight: 0.8044 cost: 0.6657 min: 0.1747 max: 2.4345 USE_META, weight: 0.9371 cost: 0.3326 min: 0.1747 max: 2.4345 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9833 eval: 0.0001 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9833 eval: 0.0001 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9833 eval: 0.0001 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.5611 eval: 0.0039 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.5611 eval: 0.0039 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.5611 eval: 0.0039 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9908 eval: 0.0001 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9908 eval: 0.0001 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9908 eval: 0.0001 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.7069 eval: 0.0026 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.7069 eval: 0.0026 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.7069 eval: 0.0026 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9969 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9969 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9969 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.1000 eval: 0.0080 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.1000 eval: 0.0080 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.1000 eval: 0.0080 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9980 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9980 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9980 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0080 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0080 Number of contacts in models: 264 Number of contacts in alignments: 147 NUMB_ALIGNS: 147 Adding 13949 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -505.8827, CN propb: -505.8827 weights: 0.3066 constraints: 907 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 907 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 907 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 13042 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 13042 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 13949 # command: