# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0365/ # command:# Making conformation for sequence T0365 numbered 1 through 226 Created new target T0365 from T0365.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0365/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0365//projects/compbio/experiments/protein-predict/casp7/T0365/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0365//projects/compbio/experiments/protein-predict/casp7/T0365/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0365/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0365/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)T172.CB) [> 3.7738 = 6.2897 < 8.1766] w=1.0000 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)L179.CB) [> 3.9122 = 6.5203 < 8.4764] w=0.9417 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)M161.CB) [> 3.9397 = 6.5662 < 8.5360] w=0.9049 to align # Constraint # added constraint: constraint((T0365)F35.CB, (T0365)I50.CB) [> 3.3772 = 5.6286 < 7.3172] w=0.8903 to align # Constraint # added constraint: constraint((T0365)L32.CB, (T0365)I54.CB) [> 3.4881 = 5.8136 < 7.5577] w=0.8348 to align # Constraint # added constraint: constraint((T0365)F36.CB, (T0365)A47.CB) [> 3.7052 = 6.1753 < 8.0278] w=0.8346 to align # Constraint # added constraint: constraint((T0365)L32.CB, (T0365)A99.CB) [> 3.7682 = 6.2804 < 8.1645] w=0.8294 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)L175.CB) [> 3.4561 = 5.7602 < 7.4883] w=0.7721 to align # Constraint # added constraint: constraint((T0365)R51.CB, (T0365)S103.CB) [> 3.1095 = 5.1825 < 6.7373] w=0.7703 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)S103.CB) [> 3.3321 = 5.5535 < 7.2195] w=0.7703 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)M161.CB) [> 3.5844 = 5.9740 < 7.7662] w=0.7486 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)T201.CB) [> 3.5529 = 5.9215 < 7.6980] w=0.7235 to align # Constraint # added constraint: constraint((T0365)V106.CB, (T0365)F121.CB) [> 3.2556 = 5.4260 < 7.0538] w=0.7222 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)I102.CB) [> 4.3112 = 7.1854 < 9.3410] w=0.7113 to align # Constraint # added constraint: constraint((T0365)L32.CB, (T0365)I50.CB) [> 4.0189 = 6.6982 < 8.7077] w=0.7060 to align # Constraint # added constraint: constraint((T0365)R51.CB, (T0365)K100.CB) [> 3.5705 = 5.9508 < 7.7361] w=0.6931 to align # Constraint # added constraint: constraint((T0365)V25.CB, (T0365)G61.CA) [> 4.0041 = 6.6736 < 8.6756] w=0.6918 to align # Constraint # added constraint: constraint((T0365)L134.CB, (T0365)I168.CB) [> 4.0611 = 6.7684 < 8.7990] w=0.6441 to align # Constraint # added constraint: constraint((T0365)T172.CB, (T0365)V205.CB) [> 4.1390 = 6.8984 < 8.9679] w=0.6354 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)A212.CB) [> 3.8627 = 6.4378 < 8.3692] w=0.6325 to align # Constraint # added constraint: constraint((T0365)R127.CB, (T0365)T172.CB) [> 3.4476 = 5.7461 < 7.4699] w=0.6303 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)L179.CB) [> 3.8089 = 6.3481 < 8.2525] w=0.6223 to align # Constraint # added constraint: constraint((T0365)L183.CB, (T0365)L198.CB) [> 3.7847 = 6.3079 < 8.2002] w=0.6152 to align # Constraint # added constraint: constraint((T0365)L179.CB, (T0365)I202.CB) [> 3.5584 = 5.9307 < 7.7099] w=0.6149 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)L219.CB) [> 4.0304 = 6.7173 < 8.7325] w=0.6132 to align # Constraint # added constraint: constraint((T0365)E169.CB, (T0365)A209.CB) [> 3.6268 = 6.0447 < 7.8582] w=0.6114 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)V205.CB) [> 4.2147 = 7.0245 < 9.1318] w=0.6044 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)Q176.CB) [> 4.1009 = 6.8348 < 8.8852] w=0.5989 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)V205.CB) [> 3.4587 = 5.7645 < 7.4939] w=0.5969 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)T201.CB) [> 3.9491 = 6.5818 < 8.5563] w=0.5954 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)I168.CB) [> 3.3920 = 5.6533 < 7.3493] w=0.5926 to align # Constraint # added constraint: constraint((T0365)A47.CB, (T0365)V106.CB) [> 2.8464 = 4.7439 < 6.1671] w=0.5895 to align # Constraint # added constraint: constraint((T0365)V106.CB, (T0365)Y124.CB) [> 3.3264 = 5.5440 < 7.2072] w=0.5886 to align # Constraint # added constraint: constraint((T0365)T39.CB, (T0365)V106.CB) [> 3.8845 = 6.4741 < 8.4164] w=0.5882 to align # Constraint # added constraint: constraint((T0365)F36.CB, (T0365)I50.CB) [> 3.2200 = 5.3666 < 6.9766] w=0.5872 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)Q176.CB) [> 3.9809 = 6.6348 < 8.6252] w=0.5829 to align # Constraint # added constraint: constraint((T0365)V25.CB, (T0365)Q92.CB) [> 3.9639 = 6.6065 < 8.5885] w=0.5717 to align # Constraint # added constraint: constraint((T0365)L183.CB, (T0365)V195.CB) [> 3.4121 = 5.6869 < 7.3930] w=0.5702 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)I162.CB) [> 3.8765 = 6.4609 < 8.3992] w=0.5685 to align # Constraint # added constraint: constraint((T0365)L31.CB, (T0365)A57.CB) [> 4.1263 = 6.8772 < 8.9403] w=0.5673 to align # Constraint # added constraint: constraint((T0365)C28.CB, (T0365)A57.CB) [> 2.7301 = 4.5501 < 5.9151] w=0.5673 to align # Constraint # added constraint: constraint((T0365)F184.CB, (T0365)V195.CB) [> 3.9321 = 6.5535 < 8.5195] w=0.5573 to align # Constraint # added constraint: constraint((T0365)L32.CB, (T0365)I95.CB) [> 3.3995 = 5.6658 < 7.3656] w=0.5485 to align # Constraint # added constraint: constraint((T0365)A29.CB, (T0365)Q92.CB) [> 3.5325 = 5.8876 < 7.6538] w=0.5485 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)L165.CB) [> 3.4656 = 5.7761 < 7.5089] w=0.5484 to align # Constraint # added constraint: constraint((T0365)V48.CB, (T0365)I107.CB) [> 4.4682 = 7.4470 < 9.6811] w=0.5483 to align # Constraint # added constraint: constraint((T0365)P120.CB, (T0365)L175.CB) [> 3.5143 = 5.8571 < 7.6142] w=0.5483 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)L208.CB) [> 3.1388 = 5.2313 < 6.8007] w=0.5480 to align # Constraint # added constraint: constraint((T0365)E58.CB, (T0365)Q92.CB) [> 4.3079 = 7.1798 < 9.3337] w=0.5451 to align # Constraint # added constraint: constraint((T0365)I54.CB, (T0365)A96.CB) [> 2.6091 = 4.3485 < 5.6530] w=0.5451 to align # Constraint # added constraint: constraint((T0365)V25.CB, (T0365)L89.CB) [> 3.5880 = 5.9800 < 7.7740] w=0.5438 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)L208.CB) [> 4.2293 = 7.0488 < 9.1635] w=0.5391 to align # Constraint # added constraint: constraint((T0365)T172.CB, (T0365)G206.CA) [> 3.5245 = 5.8741 < 7.6364] w=0.5377 to align # Constraint # added constraint: constraint((T0365)R105.CB, (T0365)T201.CB) [> 3.1142 = 5.1903 < 6.7474] w=0.5354 to align # Constraint # added constraint: constraint((T0365)I162.CB, (T0365)E220.CB) [> 3.3967 = 5.6612 < 7.3596] w=0.5347 to align # Constraint # added constraint: constraint((T0365)A38.CB, (T0365)I50.CB) [> 3.2788 = 5.4647 < 7.1041] w=0.5327 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)L125.CB) [> 4.5767 = 7.6278 < 9.9161] w=0.5308 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)A99.CB) [> 3.3743 = 5.6238 < 7.3109] w=0.5303 to align # Constraint # added constraint: constraint((T0365)T39.CB, (T0365)S103.CB) [> 2.9554 = 4.9257 < 6.4034] w=0.5290 to align # Constraint # added constraint: constraint((T0365)F36.CB, (T0365)A99.CB) [> 3.0421 = 5.0702 < 6.5912] w=0.5290 to align # Constraint # added constraint: constraint((T0365)F35.CB, (T0365)A99.CB) [> 3.0832 = 5.1387 < 6.6803] w=0.5290 to align # Constraint # added constraint: constraint((T0365)L32.CB, (T0365)A96.CB) [> 3.0722 = 5.1203 < 6.6564] w=0.5290 to align # Constraint # added constraint: constraint((T0365)A123.CB, (T0365)L175.CB) [> 3.7549 = 6.2582 < 8.1357] w=0.5247 to align # Constraint # added constraint: constraint((T0365)V25.CB, (T0365)A99.CB) [> 3.7970 = 6.3284 < 8.2269] w=0.5225 to align # Constraint # added constraint: constraint((T0365)V25.CB, (T0365)I95.CB) [> 3.2751 = 5.4584 < 7.0960] w=0.5225 to align # Constraint # added constraint: constraint((T0365)L125.CB, (T0365)V205.CB) [> 3.3816 = 5.6359 < 7.3267] w=0.5200 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)I202.CB) [> 3.7464 = 6.2441 < 8.1173] w=0.5165 to align # Constraint # added constraint: constraint((T0365)L142.CB, (T0365)V158.CB) [> 3.7961 = 6.3269 < 8.2250] w=0.5152 to align # Constraint # added constraint: constraint((T0365)K65.CB, (T0365)L86.CB) [> 3.3117 = 5.5195 < 7.1753] w=0.5148 to align # Constraint # added constraint: constraint((T0365)D62.CB, (T0365)L89.CB) [> 4.0290 = 6.7150 < 8.7294] w=0.5148 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)L165.CB) [> 3.7095 = 6.1824 < 8.0372] w=0.5136 to align # Constraint # added constraint: constraint((T0365)G61.CA, (T0365)L86.CB) [> 4.2939 = 7.1566 < 9.3035] w=0.5126 to align # Constraint # added constraint: constraint((T0365)C28.CB, (T0365)E58.CB) [> 3.9653 = 6.6089 < 8.5915] w=0.5120 to align # Constraint # added constraint: constraint((T0365)I40.CB, (T0365)I102.CB) [> 4.1560 = 6.9267 < 9.0047] w=0.5011 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)A209.CB) [> 2.5327 = 4.2213 < 5.4876] w=0.4992 to align # Constraint # added constraint: constraint((T0365)L134.CB, (T0365)A212.CB) [> 4.0590 = 6.7650 < 8.7945] w=0.4992 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)G216.CA) [> 3.1123 = 5.1872 < 6.7434] w=0.4992 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)L219.CB) [> 3.1863 = 5.3105 < 6.9036] w=0.4992 to align # Constraint # added constraint: constraint((T0365)L32.CB, (T0365)Q92.CB) [> 3.0454 = 5.0757 < 6.5985] w=0.4947 to align # Constraint # added constraint: constraint((T0365)K24.CB, (T0365)A57.CB) [> 4.3876 = 7.3126 < 9.5064] w=0.4947 to align # Constraint # added constraint: constraint((T0365)G108.CA, (T0365)F197.CB) [> 3.5055 = 5.8425 < 7.5953] w=0.4914 to align # Constraint # added constraint: constraint((T0365)C28.CB, (T0365)L89.CB) [> 3.8267 = 6.3779 < 8.2912] w=0.4899 to align # Constraint # added constraint: constraint((T0365)R180.CB, (T0365)Y199.CB) [> 4.1756 = 6.9594 < 9.0472] w=0.4790 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)V205.CB) [> 4.5822 = 7.6370 < 9.9281] w=0.4790 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)E169.CB) [> 3.8317 = 6.3862 < 8.3020] w=0.4711 to align # Constraint # added constraint: constraint((T0365)Q91.CB, (T0365)R214.CB) [> 3.1485 = 5.2474 < 6.8217] w=0.4711 to align # Constraint # added constraint: constraint((T0365)L88.CB, (T0365)R218.CB) [> 3.4304 = 5.7173 < 7.4325] w=0.4711 to align # Constraint # added constraint: constraint((T0365)L88.CB, (T0365)V215.CB) [> 3.2786 = 5.4643 < 7.1036] w=0.4711 to align # Constraint # added constraint: constraint((T0365)E87.CB, (T0365)R218.CB) [> 2.9894 = 4.9824 < 6.4771] w=0.4711 to align # Constraint # added constraint: constraint((T0365)G61.CA, (T0365)L89.CB) [> 3.3961 = 5.6602 < 7.3582] w=0.4711 to align # Constraint # added constraint: constraint((T0365)E58.CB, (T0365)T90.CB) [> 4.0491 = 6.7486 < 8.7731] w=0.4711 to align # Constraint # added constraint: constraint((T0365)A57.CB, (T0365)L89.CB) [> 4.4723 = 7.4538 < 9.6900] w=0.4711 to align # Constraint # added constraint: constraint((T0365)S55.CB, (T0365)D93.CB) [> 3.8576 = 6.4293 < 8.3581] w=0.4711 to align # Constraint # added constraint: constraint((T0365)I54.CB, (T0365)D93.CB) [> 3.4581 = 5.7635 < 7.4926] w=0.4711 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)K100.CB) [> 3.6707 = 6.1179 < 7.9533] w=0.4711 to align # Constraint # added constraint: constraint((T0365)A47.CB, (T0365)I107.CB) [> 3.1379 = 5.2299 < 6.7989] w=0.4711 to align # Constraint # added constraint: constraint((T0365)A47.CB, (T0365)S103.CB) [> 2.5135 = 4.1891 < 5.4458] w=0.4711 to align # Constraint # added constraint: constraint((T0365)W44.CB, (T0365)I107.CB) [> 3.6400 = 6.0667 < 7.8867] w=0.4711 to align # Constraint # added constraint: constraint((T0365)W44.CB, (T0365)V106.CB) [> 4.5869 = 7.6448 < 9.9383] w=0.4711 to align # Constraint # added constraint: constraint((T0365)V33.CB, (T0365)I129.CB) [> 4.4245 = 7.3741 < 9.5863] w=0.4711 to align # Constraint # added constraint: constraint((T0365)V155.CB, (T0365)L223.CB) [> 3.1706 = 5.2843 < 6.8696] w=0.4711 to align # Constraint # added constraint: constraint((T0365)V155.CB, (T0365)E220.CB) [> 3.1639 = 5.2732 < 6.8551] w=0.4711 to align # Constraint # added constraint: constraint((T0365)R153.CB, (T0365)L223.CB) [> 3.4738 = 5.7896 < 7.5265] w=0.4711 to align # Constraint # added constraint: constraint((T0365)R153.CB, (T0365)L219.CB) [> 3.6987 = 6.1645 < 8.0138] w=0.4711 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)V215.CB) [> 3.8425 = 6.4042 < 8.3255] w=0.4711 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)V215.CB) [> 3.8397 = 6.3995 < 8.3194] w=0.4711 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)V205.CB) [> 3.0029 = 5.0048 < 6.5062] w=0.4711 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)I202.CB) [> 4.0369 = 6.7282 < 8.7466] w=0.4711 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)I202.CB) [> 3.6182 = 6.0304 < 7.8394] w=0.4711 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)L198.CB) [> 4.0673 = 6.7788 < 8.8124] w=0.4711 to align # Constraint # added constraint: constraint((T0365)P120.CB, (T0365)Q178.CB) [> 3.5571 = 5.9284 < 7.7070] w=0.4711 to align # Constraint # added constraint: constraint((T0365)R105.CB, (T0365)K200.CB) [> 3.3836 = 5.6394 < 7.3312] w=0.4711 to align # Constraint # added constraint: constraint((T0365)D101.CB, (T0365)W204.CB) [> 3.2570 = 5.4283 < 7.0567] w=0.4711 to align # Constraint # added constraint: constraint((T0365)A99.CB, (T0365)L208.CB) [> 4.6029 = 7.6715 < 9.9729] w=0.4711 to align # Constraint # added constraint: constraint((T0365)K98.CB, (T0365)L208.CB) [> 3.0289 = 5.0481 < 6.5625] w=0.4711 to align # Constraint # added constraint: constraint((T0365)K98.CB, (T0365)G207.CA) [> 3.8321 = 6.3869 < 8.3029] w=0.4711 to align # Constraint # added constraint: constraint((T0365)K98.CB, (T0365)W204.CB) [> 2.6377 = 4.3962 < 5.7150] w=0.4711 to align # Constraint # added constraint: constraint((T0365)I95.CB, (T0365)A212.CB) [> 4.6182 = 7.6970 < 10.0061] w=0.4711 to align # Constraint # added constraint: constraint((T0365)I95.CB, (T0365)L211.CB) [> 3.0368 = 5.0612 < 6.5796] w=0.4711 to align # Constraint # added constraint: constraint((T0365)I95.CB, (T0365)L208.CB) [> 3.1970 = 5.3283 < 6.9268] w=0.4711 to align # Constraint # added constraint: constraint((T0365)Q92.CB, (T0365)V215.CB) [> 4.6497 = 7.7495 < 10.0743] w=0.4711 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)I162.CB) [> 3.4261 = 5.7101 < 7.4232] w=0.4711 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)L64.CB) [> 3.2008 = 5.3347 < 6.9351] w=0.4698 to align # Constraint # added constraint: constraint((T0365)K24.CB, (T0365)L64.CB) [> 3.7917 = 6.3196 < 8.2154] w=0.4698 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)V215.CB) [> 4.3671 = 7.2785 < 9.4620] w=0.4698 to align # Constraint # added constraint: constraint((T0365)E169.CB, (T0365)E213.CB) [> 3.6490 = 6.0816 < 7.9061] w=0.4698 to align # Constraint # added constraint: constraint((T0365)D130.CB, (T0365)I168.CB) [> 3.9697 = 6.6162 < 8.6010] w=0.4666 to align # Constraint # added constraint: constraint((T0365)D143.CB, (T0365)V158.CB) [> 2.9952 = 4.9920 < 6.4896] w=0.4595 to align # Constraint # added constraint: constraint((T0365)T39.CB, (T0365)K100.CB) [> 4.6496 = 7.7494 < 10.0742] w=0.4518 to align # Constraint # added constraint: constraint((T0365)T39.CB, (T0365)A99.CB) [> 2.6756 = 4.4593 < 5.7971] w=0.4518 to align # Constraint # added constraint: constraint((T0365)L31.CB, (T0365)Q53.CB) [> 4.2719 = 7.1199 < 9.2558] w=0.4483 to align # Constraint # added constraint: constraint((T0365)V25.CB, (T0365)K98.CB) [> 3.8709 = 6.4515 < 8.3870] w=0.4440 to align # Constraint # added constraint: constraint((T0365)A29.CB, (T0365)K98.CB) [> 4.7208 = 7.8680 < 10.2284] w=0.4440 to align # Constraint # added constraint: constraint((T0365)A29.CB, (T0365)I102.CB) [> 3.3592 = 5.5986 < 7.2782] w=0.4440 to align # Constraint # added constraint: constraint((T0365)F36.CB, (T0365)I113.CB) [> 3.9519 = 6.5866 < 8.5625] w=0.4440 to align # Constraint # added constraint: constraint((T0365)L165.CB, (T0365)A212.CB) [> 4.0296 = 6.7160 < 8.7307] w=0.4380 to align # Constraint # added constraint: constraint((T0365)F35.CB, (T0365)Y124.CB) [> 3.9110 = 6.5183 < 8.4738] w=0.4374 to align # Constraint # added constraint: constraint((T0365)F36.CB, (T0365)S103.CB) [> 4.0012 = 6.6687 < 8.6692] w=0.4369 to align # Constraint # added constraint: constraint((T0365)L125.CB, (T0365)Q176.CB) [> 3.3874 = 5.6457 < 7.3394] w=0.4325 to align # Constraint # added constraint: constraint((T0365)C28.CB, (T0365)G61.CA) [> 4.3255 = 7.2091 < 9.3718] w=0.4321 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)Y124.CB) [> 4.0693 = 6.7822 < 8.8169] w=0.4250 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)A209.CB) [> 3.2703 = 5.4506 < 7.0857] w=0.4206 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)A212.CB) [> 2.3057 = 3.8429 < 4.9958] w=0.4206 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)E213.CB) [> 4.1167 = 6.8612 < 8.9196] w=0.4206 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)A212.CB) [> 2.9604 = 4.9340 < 6.4142] w=0.4206 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)A212.CB) [> 2.7443 = 4.5738 < 5.9460] w=0.4206 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)V215.CB) [> 2.8707 = 4.7845 < 6.2198] w=0.4206 to align # Constraint # added constraint: constraint((T0365)P17.CB, (T0365)I68.CB) [> 3.3705 = 5.6176 < 7.3028] w=0.4187 to align # Constraint # added constraint: constraint((T0365)F35.CB, (T0365)A96.CB) [> 3.4849 = 5.8082 < 7.5507] w=0.4160 to align # Constraint # added constraint: constraint((T0365)F36.CB, (T0365)I54.CB) [> 3.8142 = 6.3570 < 8.2641] w=0.4134 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)R153.CB) [> 4.2455 = 7.0759 < 9.1986] w=0.4067 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)R153.CB) [> 3.3677 = 5.6128 < 7.2967] w=0.4067 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)K65.CB) [> 3.8195 = 6.3658 < 8.2755] w=0.3926 to align # Constraint # added constraint: constraint((T0365)K24.CB, (T0365)Q60.CB) [> 4.0157 = 6.6929 < 8.7008] w=0.3926 to align # Constraint # added constraint: constraint((T0365)A29.CB, (T0365)V132.CB) [> 4.4872 = 7.4787 < 9.7223] w=0.3926 to align # Constraint # added constraint: constraint((T0365)E37.CB, (T0365)I129.CB) [> 4.0449 = 6.7415 < 8.7639] w=0.3926 to align # Constraint # added constraint: constraint((T0365)I40.CB, (T0365)I122.CB) [> 4.0609 = 6.7681 < 8.7986] w=0.3926 to align # Constraint # added constraint: constraint((T0365)I40.CB, (T0365)L125.CB) [> 2.6866 = 4.4777 < 5.8210] w=0.3926 to align # Constraint # added constraint: constraint((T0365)I95.CB, (T0365)V132.CB) [> 4.2387 = 7.0646 < 9.1840] w=0.3926 to align # Constraint # added constraint: constraint((T0365)P114.CB, (T0365)L198.CB) [> 4.2576 = 7.0961 < 9.2249] w=0.3926 to align # Constraint # added constraint: constraint((T0365)L165.CB, (T0365)E213.CB) [> 3.6184 = 6.0306 < 7.8398] w=0.3926 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)Q176.CB) [> 4.2706 = 7.1177 < 9.2530] w=0.3916 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)R180.CB) [> 4.0114 = 6.6858 < 8.6915] w=0.3886 to align # Constraint # added constraint: constraint((T0365)L125.CB, (T0365)R180.CB) [> 4.0192 = 6.6987 < 8.7083] w=0.3837 to align # Constraint # added constraint: constraint((T0365)R69.CB, (T0365)V80.CB) [> 3.7277 = 6.2128 < 8.0766] w=0.3835 to align # Constraint # added constraint: constraint((T0365)E141.CB, (T0365)M161.CB) [> 3.0842 = 5.1403 < 6.6824] w=0.3800 to align # Constraint # added constraint: constraint((T0365)L88.CB, (T0365)L142.CB) [> 3.2866 = 5.4778 < 7.1211] w=0.3791 to align # Constraint # added constraint: constraint((T0365)Q118.CB, (T0365)L183.CB) [> 2.9954 = 4.9923 < 6.4900] w=0.3633 to align # Constraint # added constraint: constraint((T0365)L142.CB, (T0365)R153.CB) [> 3.5922 = 5.9870 < 7.7831] w=0.3436 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)L219.CB) [> 2.9540 = 4.9234 < 6.4004] w=0.3421 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)G216.CA) [> 4.3062 = 7.1770 < 9.3301] w=0.3421 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)G216.CA) [> 2.9612 = 4.9354 < 6.4160] w=0.3421 to align # Constraint # added constraint: constraint((T0365)S103.CB, (T0365)Q176.CB) [> 3.8044 = 6.3407 < 8.2429] w=0.3408 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)R109.CB) [> 4.0399 = 6.7332 < 8.7532] w=0.3404 to align # Constraint # added constraint: constraint((T0365)D46.CB, (T0365)G108.CA) [> 4.6996 = 7.8327 < 10.1825] w=0.3404 to align # Constraint # added constraint: constraint((T0365)F35.CB, (T0365)L117.CB) [> 2.6812 = 4.4686 < 5.8092] w=0.3404 to align # Constraint # added constraint: constraint((T0365)P34.CB, (T0365)L117.CB) [> 4.3358 = 7.2263 < 9.3942] w=0.3404 to align # Constraint # added constraint: constraint((T0365)F35.CB, (T0365)Q53.CB) [> 3.7446 = 6.2411 < 8.1134] w=0.3404 to align # Constraint # added constraint: constraint((T0365)C28.CB, (T0365)A96.CB) [> 4.2641 = 7.1069 < 9.2389] w=0.3361 to align # Constraint # added constraint: constraint((T0365)E141.CB, (T0365)R153.CB) [> 3.8150 = 6.3584 < 8.2659] w=0.3360 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)C128.CB) [> 3.0122 = 5.0203 < 6.5264] w=0.3353 to align # Constraint # added constraint: constraint((T0365)R109.CB, (T0365)F121.CB) [> 2.9497 = 4.9163 < 6.3911] w=0.3321 to align # Constraint # added constraint: constraint((T0365)I68.CB, (T0365)L85.CB) [> 3.6108 = 6.0180 < 7.8233] w=0.3318 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)R218.CB) [> 4.7279 = 7.8799 < 10.2438] w=0.3141 to align # Constraint # added constraint: constraint((T0365)P114.CB, (T0365)V195.CB) [> 3.8101 = 6.3501 < 8.2552] w=0.3141 to align # Constraint # added constraint: constraint((T0365)V33.CB, (T0365)Q136.CB) [> 3.9388 = 6.5646 < 8.5340] w=0.3141 to align # Constraint # added constraint: constraint((T0365)V33.CB, (T0365)G133.CA) [> 3.6582 = 6.0970 < 7.9261] w=0.3141 to align # Constraint # added constraint: constraint((T0365)A29.CB, (T0365)Q136.CB) [> 3.0960 = 5.1600 < 6.7080] w=0.3141 to align # Constraint # added constraint: constraint((T0365)Y26.CB, (T0365)Q136.CB) [> 3.9399 = 6.5664 < 8.5364] w=0.3141 to align # Constraint # added constraint: constraint((T0365)V155.CB, (T0365)A224.CB) [> 3.6702 = 6.1170 < 7.9521] w=0.3141 to align # Constraint # added constraint: constraint((T0365)I162.CB, (T0365)L219.CB) [> 3.5538 = 5.9230 < 7.6999] w=0.3128 to align # Constraint # added constraint: constraint((T0365)L125.CB, (T0365)L208.CB) [> 4.2967 = 7.1612 < 9.3095] w=0.3128 to align # Constraint # added constraint: constraint((T0365)Q110.CB, (T0365)F121.CB) [> 3.4871 = 5.8118 < 7.5553] w=0.3107 to align # Constraint # added constraint: constraint((T0365)A47.CB, (T0365)L142.CB) [> 4.3925 = 7.3209 < 9.5171] w=0.3096 to align # Constraint # added constraint: constraint((T0365)L86.CB, (T0365)F150.CB) [> 3.6893 = 6.1489 < 7.9935] w=0.3035 to align # Constraint # added constraint: constraint((T0365)I15.CB, (T0365)N140.CB) [> 4.0146 = 6.6910 < 8.6983] w=0.3005 to align # Constraint # added constraint: constraint((T0365)V106.CB, (T0365)T201.CB) [> 4.3074 = 7.1789 < 9.3326] w=0.2999 to align # Constraint # added constraint: constraint((T0365)Q136.CB, (T0365)L165.CB) [> 4.1054 = 6.8423 < 8.8949] w=0.2992 to align # Constraint # added constraint: constraint((T0365)I162.CB, (T0365)L223.CB) [> 2.6868 = 4.4780 < 5.8214] w=0.2992 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)L219.CB) [> 3.2094 = 5.3490 < 6.9537] w=0.2992 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)L219.CB) [> 3.8119 = 6.3531 < 8.2591] w=0.2992 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)A209.CB) [> 4.2839 = 7.1398 < 9.2818] w=0.2917 to align # Constraint # added constraint: constraint((T0365)R105.CB, (T0365)L198.CB) [> 4.4026 = 7.3376 < 9.5389] w=0.2917 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)A159.CB) [> 3.2003 = 5.3339 < 6.9341] w=0.2856 to align # Constraint # added constraint: constraint((T0365)L134.CB, (T0365)E164.CB) [> 4.2977 = 7.1628 < 9.3117] w=0.2844 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)F150.CB) [> 3.2858 = 5.4763 < 7.1192] w=0.2801 to align # Constraint # added constraint: constraint((T0365)I68.CB, (T0365)V80.CB) [> 3.4711 = 5.7853 < 7.5208] w=0.2793 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)G216.CA) [> 4.3873 = 7.3122 < 9.5058] w=0.2781 to align # Constraint # added constraint: constraint((T0365)Q118.CB, (T0365)D194.CB) [> 3.9231 = 6.5385 < 8.5000] w=0.2688 to align # Constraint # added constraint: constraint((T0365)L31.CB, (T0365)Y124.CB) [> 2.4952 = 4.1586 < 5.4062] w=0.2674 to align # Constraint # added constraint: constraint((T0365)L31.CB, (T0365)F121.CB) [> 4.4133 = 7.3555 < 9.5622] w=0.2674 to align # Constraint # added constraint: constraint((T0365)Y26.CB, (T0365)D62.CB) [> 3.7284 = 6.2140 < 8.0782] w=0.2674 to align # Constraint # added constraint: constraint((T0365)L111.CB, (T0365)Q182.CB) [> 3.9666 = 6.6110 < 8.5943] w=0.2627 to align # Constraint # added constraint: constraint((T0365)I129.CB, (T0365)L142.CB) [> 3.6447 = 6.0744 < 7.8968] w=0.2624 to align # Constraint # added constraint: constraint((T0365)L145.CB, (T0365)V158.CB) [> 3.1014 = 5.1690 < 6.7197] w=0.2623 to align # Constraint # added constraint: constraint((T0365)L145.CB, (T0365)F157.CB) [> 3.3910 = 5.6517 < 7.3472] w=0.2623 to align # Constraint # added constraint: constraint((T0365)L142.CB, (T0365)V155.CB) [> 4.2498 = 7.0830 < 9.2079] w=0.2576 to align # Constraint # added constraint: constraint((T0365)L89.CB, (T0365)I102.CB) [> 3.9902 = 6.6504 < 8.6455] w=0.2480 to align # Constraint # added constraint: constraint((T0365)S30.CB, (T0365)I54.CB) [> 4.1666 = 6.9443 < 9.0276] w=0.2454 to align # Constraint # added constraint: constraint((T0365)A96.CB, (T0365)Q136.CB) [> 4.1425 = 6.9041 < 8.9753] w=0.2454 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)L211.CB) [> 4.4374 = 7.3957 < 9.6144] w=0.2453 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)Q176.CB) [> 3.6517 = 6.0862 < 7.9120] w=0.2436 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)F157.CB) [> 4.4937 = 7.4895 < 9.7364] w=0.2434 to align # Constraint # added constraint: constraint((T0365)E141.CB, (T0365)E154.CB) [> 2.9603 = 4.9339 < 6.4141] w=0.2434 to align # Constraint # added constraint: constraint((T0365)I107.CB, (T0365)L175.CB) [> 2.7059 = 4.5099 < 5.8629] w=0.2424 to align # Constraint # added constraint: constraint((T0365)G104.CA, (T0365)D171.CB) [> 4.6028 = 7.6714 < 9.9728] w=0.2424 to align # Constraint # added constraint: constraint((T0365)L64.CB, (T0365)I95.CB) [> 3.1716 = 5.2861 < 6.8719] w=0.2424 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)A135.CB) [> 3.9121 = 6.5201 < 8.4761] w=0.2404 to align # Constraint # added constraint: constraint((T0365)L111.CB, (T0365)V193.CB) [> 4.3898 = 7.3164 < 9.5113] w=0.2356 to align # Constraint # added constraint: constraint((T0365)G108.CA, (T0365)V193.CB) [> 4.7207 = 7.8678 < 10.2281] w=0.2356 to align # Constraint # added constraint: constraint((T0365)A99.CB, (T0365)W204.CB) [> 4.6532 = 7.7554 < 10.0820] w=0.2356 to align # Constraint # added constraint: constraint((T0365)Q91.CB, (T0365)R218.CB) [> 4.3836 = 7.3060 < 9.4979] w=0.2356 to align # Constraint # added constraint: constraint((T0365)W44.CB, (T0365)R109.CB) [> 3.5491 = 5.9152 < 7.6898] w=0.2356 to align # Constraint # added constraint: constraint((T0365)L183.CB, (T0365)M196.CB) [> 4.4312 = 7.3854 < 9.6010] w=0.2356 to align # Constraint # added constraint: constraint((T0365)V158.CB, (T0365)E220.CB) [> 3.2794 = 5.4658 < 7.1055] w=0.2356 to align # Constraint # added constraint: constraint((T0365)V158.CB, (T0365)G216.CA) [> 3.3288 = 5.5480 < 7.2124] w=0.2356 to align # Constraint # added constraint: constraint((T0365)R153.CB, (T0365)M222.CB) [> 3.8455 = 6.4092 < 8.3319] w=0.2356 to align # Constraint # added constraint: constraint((T0365)R153.CB, (T0365)E220.CB) [> 3.7707 = 6.2845 < 8.1699] w=0.2356 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)M222.CB) [> 4.6592 = 7.7654 < 10.0950] w=0.2356 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)E220.CB) [> 4.4991 = 7.4985 < 9.7480] w=0.2356 to align # Constraint # added constraint: constraint((T0365)L111.CB, (T0365)D194.CB) [> 3.7096 = 6.1827 < 8.0375] w=0.2356 to align # Constraint # added constraint: constraint((T0365)D84.CB, (T0365)M222.CB) [> 2.8043 = 4.6738 < 6.0760] w=0.2356 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)L85.CB) [> 3.6499 = 6.0831 < 7.9081] w=0.2356 to align # Constraint # added constraint: constraint((T0365)W44.CB, (T0365)L111.CB) [> 4.2128 = 7.0214 < 9.1278] w=0.2356 to align # Constraint # added constraint: constraint((T0365)R109.CB, (T0365)F197.CB) [> 3.1447 = 5.2412 < 6.8136] w=0.2356 to align # Constraint # added constraint: constraint((T0365)V155.CB, (T0365)M222.CB) [> 4.5710 = 7.6184 < 9.9038] w=0.2356 to align # Constraint # added constraint: constraint((T0365)I122.CB, (T0365)F184.CB) [> 4.6648 = 7.7747 < 10.1070] w=0.2252 to align # Constraint # added constraint: constraint((T0365)R51.CB, (T0365)I107.CB) [> 3.9151 = 6.5252 < 8.4828] w=0.2252 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)R180.CB) [> 4.3664 = 7.2774 < 9.4606] w=0.2241 to align # Constraint # added constraint: constraint((T0365)F10.CB, (T0365)D62.CB) [> 3.0113 = 5.0189 < 6.5246] w=0.2220 to align # Constraint # added constraint: constraint((T0365)F10.CB, (T0365)K65.CB) [> 2.8771 = 4.7951 < 6.2337] w=0.2220 to align # Constraint # added constraint: constraint((T0365)D27.CB, (T0365)R127.CB) [> 4.0926 = 6.8210 < 8.8673] w=0.2220 to align # Constraint # added constraint: constraint((T0365)N97.CB, (T0365)I168.CB) [> 3.7874 = 6.3123 < 8.2060] w=0.2220 to align # Constraint # added constraint: constraint((T0365)Q60.CB, (T0365)K94.CB) [> 4.5295 = 7.5491 < 9.8138] w=0.2220 to align # Constraint # added constraint: constraint((T0365)K94.CB, (T0365)L221.CB) [> 3.8436 = 6.4060 < 8.3278] w=0.2219 to align # Constraint # added constraint: constraint((T0365)Y26.CB, (T0365)Q126.CB) [> 4.7473 = 7.9121 < 10.2857] w=0.2219 to align # Constraint # added constraint: constraint((T0365)I15.CB, (T0365)Q136.CB) [> 3.8755 = 6.4591 < 8.3969] w=0.2219 to align # Constraint # added constraint: constraint((T0365)P14.CB, (T0365)Q137.CB) [> 3.7301 = 6.2167 < 8.0818] w=0.2219 to align # Constraint # added constraint: constraint((T0365)I162.CB, (T0365)A224.CB) [> 3.4259 = 5.7098 < 7.4227] w=0.2219 to align # Constraint # added constraint: constraint((T0365)A159.CB, (T0365)A224.CB) [> 4.5931 = 7.6551 < 9.9516] w=0.2219 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)L223.CB) [> 4.0463 = 6.7439 < 8.7670] w=0.2219 to align # Constraint # added constraint: constraint((T0365)Q136.CB, (T0365)L223.CB) [> 3.7529 = 6.2548 < 8.1312] w=0.2219 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)L223.CB) [> 3.7266 = 6.2110 < 8.0743] w=0.2219 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)L223.CB) [> 4.0289 = 6.7148 < 8.7293] w=0.2219 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)M222.CB) [> 3.3848 = 5.6413 < 7.3337] w=0.2219 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)L219.CB) [> 3.9421 = 6.5701 < 8.5412] w=0.2219 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)R218.CB) [> 4.1397 = 6.8994 < 8.9693] w=0.2219 to align # Constraint # added constraint: constraint((T0365)K98.CB, (T0365)L221.CB) [> 4.1678 = 6.9464 < 9.0303] w=0.2219 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)R218.CB) [> 4.6479 = 7.7465 < 10.0705] w=0.2219 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)Y199.CB) [> 3.3767 = 5.6279 < 7.3163] w=0.2114 to align # Constraint # added constraint: constraint((T0365)F184.CB, (T0365)D194.CB) [> 2.8646 = 4.7743 < 6.2065] w=0.2100 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)Y199.CB) [> 3.5469 = 5.9115 < 7.6850] w=0.2031 to align # Constraint # added constraint: constraint((T0365)R109.CB, (T0365)Y199.CB) [> 3.1080 = 5.1800 < 6.7340] w=0.2027 to align # Constraint # added constraint: constraint((T0365)R109.CB, (T0365)L198.CB) [> 3.4683 = 5.7805 < 7.5147] w=0.2027 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)I139.CB) [> 3.4672 = 5.7787 < 7.5124] w=0.2014 to align # Constraint # added constraint: constraint((T0365)R69.CB, (T0365)L85.CB) [> 4.0722 = 6.7871 < 8.8232] w=0.2008 to align # Constraint # added constraint: constraint((T0365)L31.CB, (T0365)I50.CB) [> 3.9753 = 6.6256 < 8.6132] w=0.1985 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)I68.CB) [> 3.5103 = 5.8506 < 7.6057] w=0.1905 to align # Constraint # added constraint: constraint((T0365)L117.CB, (T0365)L183.CB) [> 4.4217 = 7.3695 < 9.5803] w=0.1901 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)T201.CB) [> 4.0454 = 6.7424 < 8.7651] w=0.1859 to align # Constraint # added constraint: constraint((T0365)L186.CB, (T0365)V195.CB) [> 2.6267 = 4.3778 < 5.6911] w=0.1851 to align # Constraint # added constraint: constraint((T0365)L117.CB, (T0365)L198.CB) [> 4.4110 = 7.3516 < 9.5571] w=0.1851 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)C128.CB) [> 3.5769 = 5.9614 < 7.7499] w=0.1819 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)F121.CB) [> 3.7012 = 6.1686 < 8.0192] w=0.1801 to align # Constraint # added constraint: constraint((T0365)Y26.CB, (T0365)D166.CB) [> 3.9218 = 6.5363 < 8.4972] w=0.1776 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)C128.CB) [> 4.3260 = 7.2100 < 9.3730] w=0.1776 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)Y124.CB) [> 3.5466 = 5.9110 < 7.6843] w=0.1776 to align # Constraint # added constraint: constraint((T0365)Q19.CB, (T0365)I177.CB) [> 4.7534 = 7.9224 < 10.2991] w=0.1776 to align # Constraint # added constraint: constraint((T0365)L7.CB, (T0365)R127.CB) [> 4.5637 = 7.6063 < 9.8881] w=0.1776 to align # Constraint # added constraint: constraint((T0365)L7.CB, (T0365)Y124.CB) [> 3.5383 = 5.8972 < 7.6664] w=0.1776 to align # Constraint # added constraint: constraint((T0365)V80.CB, (T0365)V132.CB) [> 3.5197 = 5.8662 < 7.6261] w=0.1776 to align # Constraint # added constraint: constraint((T0365)M78.CB, (T0365)Q136.CB) [> 4.6636 = 7.7727 < 10.1046] w=0.1776 to align # Constraint # added constraint: constraint((T0365)L72.CB, (T0365)Q136.CB) [> 3.7007 = 6.1678 < 8.0182] w=0.1776 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)A148.CB) [> 3.7957 = 6.3261 < 8.2239] w=0.1775 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)V132.CB) [> 3.4122 = 5.6870 < 7.3931] w=0.1745 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)E220.CB) [> 4.3145 = 7.1908 < 9.3481] w=0.1741 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)F150.CB) [> 3.7796 = 6.2994 < 8.1892] w=0.1715 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)Y124.CB) [> 3.5800 = 5.9668 < 7.7568] w=0.1715 to align # Constraint # added constraint: constraint((T0365)L72.CB, (T0365)E81.CB) [> 4.2991 = 7.1652 < 9.3147] w=0.1648 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)V80.CB) [> 3.9358 = 6.5597 < 8.5276] w=0.1637 to align # Constraint # added constraint: constraint((T0365)L18.CB, (T0365)P79.CB) [> 4.3331 = 7.2219 < 9.3885] w=0.1570 to align # Constraint # added constraint: constraint((T0365)I68.CB, (T0365)P79.CB) [> 4.1981 = 6.9968 < 9.0958] w=0.1570 to align # Constraint # added constraint: constraint((T0365)R69.CB, (T0365)P79.CB) [> 4.0359 = 6.7264 < 8.7444] w=0.1570 to align # Constraint # added constraint: constraint((T0365)E81.CB, (T0365)R225.CB) [> 4.4973 = 7.4955 < 9.7442] w=0.1570 to align # Constraint # added constraint: constraint((T0365)R82.CB, (T0365)L223.CB) [> 4.7226 = 7.8710 < 10.2324] w=0.1570 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)E203.CB) [> 4.2781 = 7.1301 < 9.2691] w=0.1570 to align # Constraint # added constraint: constraint((T0365)D84.CB, (T0365)L221.CB) [> 3.8902 = 6.4836 < 8.4287] w=0.1570 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)L211.CB) [> 4.6109 = 7.6848 < 9.9902] w=0.1570 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)A212.CB) [> 2.7073 = 4.5121 < 5.8658] w=0.1570 to align # Constraint # added constraint: constraint((T0365)C28.CB, (T0365)L64.CB) [> 3.4742 = 5.7903 < 7.5274] w=0.1512 to align # Constraint # added constraint: constraint((T0365)L72.CB, (T0365)I102.CB) [> 3.9415 = 6.5691 < 8.5399] w=0.1497 to align # Constraint # added constraint: constraint((T0365)D23.CB, (T0365)L72.CB) [> 3.1446 = 5.2410 < 6.8134] w=0.1480 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)Q176.CB) [> 3.9365 = 6.5609 < 8.5292] w=0.1480 to align # Constraint # added constraint: constraint((T0365)R109.CB, (T0365)M196.CB) [> 4.6494 = 7.7491 < 10.0738] w=0.1465 to align # Constraint # added constraint: constraint((T0365)Q110.CB, (T0365)V195.CB) [> 4.6632 = 7.7720 < 10.1035] w=0.1465 to align # Constraint # added constraint: constraint((T0365)L111.CB, (T0365)M196.CB) [> 3.0714 = 5.1190 < 6.6547] w=0.1465 to align # Constraint # added constraint: constraint((T0365)G108.CA, (T0365)L117.CB) [> 4.2433 = 7.0721 < 9.1938] w=0.1439 to align # Constraint # added constraint: constraint((T0365)L64.CB, (T0365)L88.CB) [> 3.8358 = 6.3930 < 8.3109] w=0.1345 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)V132.CB) [> 3.5349 = 5.8914 < 7.6589] w=0.1321 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)C128.CB) [> 3.1995 = 5.3326 < 6.9324] w=0.1321 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)F121.CB) [> 3.5875 = 5.9792 < 7.7730] w=0.1321 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)A148.CB) [> 3.4591 = 5.7651 < 7.4946] w=0.1286 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)V138.CB) [> 4.1480 = 6.9134 < 8.9874] w=0.1245 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)I139.CB) [> 4.5252 = 7.5420 < 9.8046] w=0.1221 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)T201.CB) [> 4.0414 = 6.7357 < 8.7564] w=0.1213 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)F121.CB) [> 4.0628 = 6.7714 < 8.8028] w=0.1184 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)A131.CB) [> 4.4953 = 7.4921 < 9.7398] w=0.1184 to align # Constraint # added constraint: constraint((T0365)V80.CB, (T0365)Y124.CB) [> 3.7857 = 6.3095 < 8.2024] w=0.1183 to align # Constraint # added constraint: constraint((T0365)P73.CB, (T0365)L85.CB) [> 4.4505 = 7.4176 < 9.6428] w=0.1153 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)L72.CB) [> 3.8600 = 6.4334 < 8.3634] w=0.1153 to align # Constraint # added constraint: constraint((T0365)P73.CB, (T0365)R82.CB) [> 4.5752 = 7.6253 < 9.9129] w=0.1120 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)L145.CB) [> 3.9932 = 6.6553 < 8.6519] w=0.1114 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)I102.CB) [> 3.6166 = 6.0277 < 7.8360] w=0.1058 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)T201.CB) [> 3.5525 = 5.9208 < 7.6970] w=0.1055 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)L145.CB) [> 3.7341 = 6.2235 < 8.0906] w=0.1054 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)L76.CB) [> 3.9222 = 6.5370 < 8.4981] w=0.1043 to align # Constraint # added constraint: constraint((T0365)I15.CB, (T0365)T71.CB) [> 4.3223 = 7.2038 < 9.3650] w=0.1033 to align # Constraint # added constraint: constraint((T0365)M196.CB, (T0365)V215.CB) [> 2.7988 = 4.6646 < 6.0640] w=0.1021 to align # Constraint # added constraint: constraint((T0365)P79.CB, (T0365)L88.CB) [> 4.4319 = 7.3865 < 9.6024] w=0.1017 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)V193.CB) [> 3.2563 = 5.4272 < 7.0553] w=0.0977 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)A135.CB) [> 3.2904 = 5.4840 < 7.1292] w=0.0964 to align # Constraint # added constraint: constraint((T0365)E81.CB, (T0365)R153.CB) [> 4.4406 = 7.4010 < 9.6213] w=0.0940 to align # Constraint # added constraint: constraint((T0365)L76.CB, (T0365)Y124.CB) [> 4.1117 = 6.8528 < 8.9087] w=0.0929 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)L146.CB) [> 3.4499 = 5.7499 < 7.4749] w=0.0883 to align # Constraint # added constraint: constraint((T0365)E67.CB, (T0365)Q182.CB) [> 4.1274 = 6.8790 < 8.9427] w=0.0879 to align # Constraint # added constraint: constraint((T0365)G75.CA, (T0365)L85.CB) [> 2.3053 = 3.8421 < 4.9948] w=0.0875 to align # Constraint # added constraint: constraint((T0365)L76.CB, (T0365)L85.CB) [> 4.2605 = 7.1008 < 9.2311] w=0.0875 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)I139.CB) [> 4.2077 = 7.0128 < 9.1166] w=0.0846 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)Q176.CB) [> 3.5117 = 5.8528 < 7.6087] w=0.0844 to align # Constraint # added constraint: constraint((T0365)F77.CB, (T0365)V158.CB) [> 4.1568 = 6.9281 < 9.0065] w=0.0842 to align # Constraint # added constraint: constraint((T0365)V9.CB, (T0365)L145.CB) [> 4.6268 = 7.7113 < 10.0248] w=0.0830 to align # Constraint # added constraint: constraint((T0365)V9.CB, (T0365)I139.CB) [> 4.0886 = 6.8143 < 8.8586] w=0.0830 to align # Constraint # added constraint: constraint((T0365)Q136.CB, (T0365)L211.CB) [> 4.5409 = 7.5681 < 9.8386] w=0.0830 to align # Constraint # added constraint: constraint((T0365)A38.CB, (T0365)M78.CB) [> 3.1823 = 5.3038 < 6.8949] w=0.0787 to align # Constraint # added constraint: constraint((T0365)M22.CB, (T0365)F77.CB) [> 2.6968 = 4.4947 < 5.8432] w=0.0787 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)F77.CB) [> 3.5479 = 5.9131 < 7.6870] w=0.0787 to align # Constraint # added constraint: constraint((T0365)L18.CB, (T0365)M78.CB) [> 4.6546 = 7.7576 < 10.0849] w=0.0787 to align # Constraint # added constraint: constraint((T0365)L18.CB, (T0365)F77.CB) [> 1.7723 = 2.9538 < 3.8400] w=0.0787 to align # Constraint # added constraint: constraint((T0365)L18.CB, (T0365)L76.CB) [> 3.5227 = 5.8713 < 7.6326] w=0.0787 to align # Constraint # added constraint: constraint((T0365)V195.CB, (T0365)R214.CB) [> 2.9388 = 4.8981 < 6.3675] w=0.0787 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)L211.CB) [> 4.6109 = 7.6848 < 9.9902] w=0.0785 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)P120.CB) [> 3.5697 = 5.9495 < 7.7343] w=0.0772 to align # Constraint # added constraint: constraint((T0365)G108.CA, (T0365)L190.CB) [> 4.7395 = 7.8991 < 10.2689] w=0.0772 to align # Constraint # added constraint: constraint((T0365)Q136.CB, (T0365)L221.CB) [> 4.1677 = 6.9461 < 9.0300] w=0.0772 to align # Constraint # added constraint: constraint((T0365)Q136.CB, (T0365)M222.CB) [> 3.5911 = 5.9851 < 7.7807] w=0.0772 to align # Constraint # added constraint: constraint((T0365)M161.CB, (T0365)M222.CB) [> 4.5274 = 7.5457 < 9.8094] w=0.0772 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)A209.CB) [> 3.4175 = 5.6958 < 7.4046] w=0.0772 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)M222.CB) [> 2.7182 = 4.5304 < 5.8895] w=0.0772 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)L211.CB) [> 4.7648 = 7.9414 < 10.3238] w=0.0772 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)L190.CB) [> 3.5377 = 5.8962 < 7.6651] w=0.0740 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)G75.CA) [> 3.4289 = 5.7148 < 7.4292] w=0.0722 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)Q176.CB) [> 4.0456 = 6.7427 < 8.7655] w=0.0688 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)A135.CB) [> 3.9138 = 6.5230 < 8.4799] w=0.0660 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)A131.CB) [> 3.0961 = 5.1602 < 6.7083] w=0.0660 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)Y124.CB) [> 3.3224 = 5.5374 < 7.1986] w=0.0660 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)A131.CB) [> 3.9138 = 6.5230 < 8.4799] w=0.0660 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)P192.CB) [> 4.7789 = 7.9649 < 10.3543] w=0.0643 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)V138.CB) [> 3.8930 = 6.4884 < 8.4349] w=0.0643 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)V138.CB) [> 3.0000 = 4.9999 < 6.4999] w=0.0643 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)V138.CB) [> 4.0472 = 6.7453 < 8.7689] w=0.0643 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)L31.CB) [> 3.0582 = 5.0970 < 6.6260] w=0.0637 to align # Constraint # added constraint: constraint((T0365)I6.CB, (T0365)P17.CB) [> 3.7901 = 6.3169 < 8.2120] w=0.0592 to align # Constraint # added constraint: constraint((T0365)R82.CB, (T0365)Q136.CB) [> 3.8788 = 6.4646 < 8.4040] w=0.0561 to align # Constraint # added constraint: constraint((T0365)F77.CB, (T0365)I139.CB) [> 4.2030 = 7.0050 < 9.1065] w=0.0561 to align # Constraint # added constraint: constraint((T0365)L186.CB, (T0365)F197.CB) [> 3.2474 = 5.4123 < 7.0360] w=0.0561 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)S217.CB) [> 4.3503 = 7.2505 < 9.4256] w=0.0561 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)D210.CB) [> 4.4973 = 7.4955 < 9.7442] w=0.0561 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)A209.CB) [> 2.6654 = 4.4423 < 5.7750] w=0.0561 to align # Constraint # added constraint: constraint((T0365)L179.CB, (T0365)A224.CB) [> 2.8500 = 4.7501 < 6.1751] w=0.0522 to align # Constraint # added constraint: constraint((T0365)L179.CB, (T0365)L223.CB) [> 3.1423 = 5.2371 < 6.8083] w=0.0522 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)V138.CB) [> 3.8284 = 6.3808 < 8.2950] w=0.0468 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)R153.CB) [> 3.9154 = 6.5257 < 8.4833] w=0.0454 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)L146.CB) [> 4.3481 = 7.2468 < 9.4208] w=0.0454 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)L146.CB) [> 3.7933 = 6.3222 < 8.2189] w=0.0454 to align # Constraint # added constraint: constraint((T0365)M78.CB, (T0365)R109.CB) [> 4.6156 = 7.6927 < 10.0005] w=0.0454 to align # Constraint # added constraint: constraint((T0365)L76.CB, (T0365)G108.CA) [> 3.6223 = 6.0371 < 7.8482] w=0.0454 to align # Constraint # added constraint: constraint((T0365)V3.CB, (T0365)L112.CB) [> 4.7732 = 7.9553 < 10.3419] w=0.0437 to align # Constraint # added constraint: constraint((T0365)S5.CB, (T0365)L112.CB) [> 3.4624 = 5.7707 < 7.5019] w=0.0437 to align # Constraint # added constraint: constraint((T0365)I6.CB, (T0365)P114.CB) [> 2.8990 = 4.8316 < 6.2811] w=0.0437 to align # Constraint # added constraint: constraint((T0365)P14.CB, (T0365)V193.CB) [> 4.6789 = 7.7982 < 10.1377] w=0.0437 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)D173.CB) [> 2.2987 = 3.8312 < 4.9805] w=0.0437 to align # Constraint # added constraint: constraint((T0365)L112.CB, (T0365)F121.CB) [> 4.0913 = 6.8188 < 8.8645] w=0.0437 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)R153.CB) [> 3.6038 = 6.0063 < 7.8082] w=0.0425 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)R109.CB) [> 4.4670 = 7.4450 < 9.6785] w=0.0415 to align # Constraint # added constraint: constraint((T0365)V9.CB, (T0365)I102.CB) [> 3.9461 = 6.5768 < 8.5498] w=0.0415 to align # Constraint # added constraint: constraint((T0365)R109.CB, (T0365)Q176.CB) [> 4.2593 = 7.0989 < 9.2285] w=0.0415 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)A135.CB) [> 4.7637 = 7.9396 < 10.3214] w=0.0415 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)I50.CB) [> 1.8754 = 3.1256 < 4.0633] w=0.0394 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)L186.CB) [> 3.7423 = 6.2371 < 8.1083] w=0.0394 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)N191.CB) [> 4.3014 = 7.1691 < 9.3198] w=0.0394 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)A131.CB) [> 3.0213 = 5.0355 < 6.5462] w=0.0321 to align # Constraint # added constraint: constraint((T0365)G108.CA, (T0365)L146.CB) [> 4.7873 = 7.9788 < 10.3724] w=0.0321 to align # Constraint # added constraint: constraint((T0365)F77.CB, (T0365)L146.CB) [> 4.1773 = 6.9622 < 9.0509] w=0.0281 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)S217.CB) [> 4.3503 = 7.2505 < 9.4256] w=0.0281 to align # Constraint # added constraint: constraint((T0365)V9.CB, (T0365)A131.CB) [> 2.9228 = 4.8714 < 6.3328] w=0.0261 to align # Constraint # added constraint: constraint((T0365)P14.CB, (T0365)G75.CA) [> 3.8535 = 6.4225 < 8.3492] w=0.0261 to align # Constraint # added constraint: constraint((T0365)P14.CB, (T0365)L76.CB) [> 4.0066 = 6.6776 < 8.6809] w=0.0261 to align # Constraint # added constraint: constraint((T0365)V3.CB, (T0365)L18.CB) [> 4.7053 = 7.8421 < 10.1948] w=0.0261 to align # Constraint # added constraint: constraint((T0365)V3.CB, (T0365)M22.CB) [> 3.5720 = 5.9533 < 7.7393] w=0.0261 to align # Constraint # added constraint: constraint((T0365)I6.CB, (T0365)L18.CB) [> 3.7692 = 6.2820 < 8.1666] w=0.0261 to align # Constraint # added constraint: constraint((T0365)I6.CB, (T0365)M22.CB) [> 4.0065 = 6.6775 < 8.6807] w=0.0261 to align # Constraint # added constraint: constraint((T0365)I6.CB, (T0365)R153.CB) [> 3.4206 = 5.7010 < 7.4113] w=0.0261 to align # Constraint # added constraint: constraint((T0365)L7.CB, (T0365)M22.CB) [> 4.4311 = 7.3852 < 9.6008] w=0.0261 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)A135.CB) [> 4.1839 = 6.9732 < 9.0652] w=0.0261 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)A224.CB) [> 4.7058 = 7.8430 < 10.1959] w=0.0261 to align # Constraint # added constraint: constraint((T0365)P79.CB, (T0365)I113.CB) [> 4.5755 = 7.6258 < 9.9135] w=0.0261 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)L190.CB) [> 4.1523 = 6.9205 < 8.9966] w=0.0236 to align # Constraint # added constraint: constraint((T0365)I113.CB, (T0365)M222.CB) [> 4.0544 = 6.7573 < 8.7844] w=0.0234 to align # Constraint # added constraint: constraint((T0365)M196.CB, (T0365)M222.CB) [> 4.1325 = 6.8874 < 8.9537] w=0.0234 to align # Constraint # added constraint: constraint((T0365)V193.CB, (T0365)M222.CB) [> 2.9675 = 4.9459 < 6.4296] w=0.0234 to align # Constraint # added constraint: constraint((T0365)P192.CB, (T0365)M222.CB) [> 3.4645 = 5.7741 < 7.5063] w=0.0234 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)V138.CB) [> 4.6636 = 7.7727 < 10.1045] w=0.0234 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)R153.CB) [> 3.8515 = 6.4191 < 8.3449] w=0.0212 to align # Constraint # added constraint: constraint((T0365)L76.CB, (T0365)I102.CB) [> 4.2787 = 7.1311 < 9.2705] w=0.0203 to align # Constraint # added constraint: constraint((T0365)G75.CA, (T0365)Y124.CB) [> 4.7021 = 7.8369 < 10.1880] w=0.0203 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)L146.CB) [> 4.1033 = 6.8388 < 8.8905] w=0.0203 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)L190.CB) [> 4.1530 = 6.9217 < 8.9983] w=0.0203 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)P79.CB) [> 3.0117 = 5.0196 < 6.5255] w=0.0157 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)M78.CB) [> 4.7453 = 7.9088 < 10.2815] w=0.0157 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)P192.CB) [> 4.3302 = 7.2170 < 9.3821] w=0.0157 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)P192.CB) [> 4.1853 = 6.9755 < 9.0681] w=0.0157 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)V132.CB) [> 4.4638 = 7.4397 < 9.6715] w=0.0157 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)E187.CB) [> 4.1853 = 6.9755 < 9.0682] w=0.0079 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)P192.CB) [> 4.3302 = 7.2170 < 9.3821] w=0.0079 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0365/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0365/decoys/ # ReadConformPDB reading from PDB file chimera-11-10.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-8-7.gromacs0.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-8-7.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-8-7.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 226 in servers/POMYSL_TS2.pdb.gz # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 WARNING: atom 1 has residue number 33 < previous residue 226 in servers/POMYSL_TS5.pdb.gz # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 9 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 9 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0365)E141.CA and (T0365)A148.CA only 0 apart, marking (T0365)E141.CA as missing WARNING: atoms too close: (T0365)L142.CA and (T0365)G149.CA only 0 apart, marking (T0365)L142.CA as missing WARNING: atoms too close: (T0365)D143.CA and (T0365)F150.CA only 0 apart, marking (T0365)F150.CA as missing # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 2 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 16 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0365)D84.O and (T0365)L85.N only 0 apart, marking (T0365)L85.N as missing # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0365)R66.O and (T0365)E67.N only 0 apart, marking (T0365)E67.N as missing # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0365)D45.O and (T0365)D46.N only 0 apart, marking (T0365)D46.N as missing # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 WARNING: atom 1 has residue number 9 < previous residue 226 in servers/nFOLD_TS5.pdb.gz # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 260 model score 1.0685 model score 0.8636 model score 0.8626 model score 0.8617 model score 1.8950 model score 1.7048 model score 2.4517 model score 2.1301 model score 2.3613 model score 2.1241 model score 1.7615 model score 1.9929 model score 2.0405 model score 1.3395 model score 2.8462 model score 2.3236 model score 1.9366 model score 2.8830 model score 0.4293 model score 1.0325 model score 0.4558 model score 1.0227 model score 0.4624 model score 1.4053 model score 1.8145 model score 1.5519 model score 1.8247 model score 1.7690 model score 0.4074 model score 0.4674 model score 2.0224 model score 0.2920 model score 0.3099 model score 0.4768 model score 0.4269 model score 0.4786 model score 1.0914 model score 0.4114 model score 0.4422 model score 0.5584 model score 2.6574 model score 1.7381 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.2424 model score 0.6097 model score 0.5808 model score 0.5461 model score 0.6209 model score 0.4261 model score 0.3099 model score 0.4269 model score 0.2920 model score 0.4786 model score 0.6141 model score 0.6067 model score 0.8597 model score 0.9421 model score 0.4293 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.4992 model score 2.5591 model score 2.4481 model score 2.4248 model score 2.3344 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.5487 model score 0.5138 model score 0.4621 model score 2.2279 model score 0.5714 model score 1.5343 model score 1.4646 model score 2.0633 model score 2.0641 model score 0.5823 model score 0.3393 model score 0.3926 model score 0.6045 model score 0.5228 model score 0.4674 model score 0.4310 model score 0.4499 model score 0.6839 model score 1.9466 model score 2.0256 model score 1.9635 model score 1.6861 model score 0.8627 model score 0.4063 model score 0.6647 model score 1.2452 model score 1.7594 model score 1.2771 model score 0.5985 model score 0.7168 model score 0.3659 model score 0.6122 model score 2.0975 model score 0.7007 model score 0.6618 model score 0.5766 model score 0.6122 model score 2.1396 model score 0.4822 model score 0.5593 model score 0.4764 model score 0.4794 model score 0.4816 model score 0.7804 model score 2.3045 model score 1.8398 model score 2.2764 model score 2.4539 model score 1.9335 model score 0.3876 model score 0.4011 model score 0.3951 model score 0.4010 model score 0.3849 model score 0.3888 model score 0.4019 model score 0.3931 model score 0.3984 model score 0.3979 model score 0.3259 model score 0.3896 model score 0.3853 model score 0.3280 model score 0.3015 model score 0.7425 model score 0.9658 model score 0.7945 model score 0.9384 model score 1.0225 model score 0.7036 model score 0.5477 model score 0.4313 model score 0.5631 model score 0.4477 model score 0.3015 model score 0.4512 model score 0.3642 model score 0.5644 model score 0.3585 model score 0.5537 model score 0.4823 model score 0.5228 model score 0.5913 model score 0.4823 model score 0.9233 model score 0.4684 model score 0.4743 model score 0.5602 model score 0.4684 model score 0.8938 model score 0.4589 model score 0.3948 model score 0.5631 model score 0.5477 model score 0.4313 model score 0.3796 model score 0.3813 model score 0.5105 model score 0.4427 model score 0.4710 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.9277 model score 0.0779 model score 0.1544 model score 0.4289 model score 0.9948 model score 0.3642 model score 0.4512 model score 1.8225 model score 0.7556 model score 2.0573 model score 0.3762 model score 0.7215 model score 1.2672 model score 2.0978 model score 2.1236 model score 0.7804 model score 0.4984 model score 0.4655 model score 2.4159 model score 2.1856 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.3476 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.3185 model score 0.3196 model score 0.4545 model score 0.3109 model score 0.3030 model score 0.5446 model score 0.4869 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.1176 model score 2.0046 model score 2.2513 model score 2.3357 model score 2.1974 model score 2.2820 model score 2.5121 model score 2.4696 model score 2.4900 model score 2.3061 model score 0.4560 model score 2.0263 model score 1.5688 model score 2.1692 model score 2.0503 model score 0.4964 model score 0.3363 model score 1.2560 model score 2.0190 model score 1.2558 model score 0.4429 model score 1.0534 model score 1.1126 model score 1.0127 model score 1.8210 model score 1.8771 model score 0.5475 weight: 0.6822 eval: 1.0685 min: 0.0779 max: 2.8830 weight: 0.7479 eval: 0.8636 min: 0.0779 max: 2.8830 weight: 0.7482 eval: 0.8626 min: 0.0779 max: 2.8830 weight: 0.7485 eval: 0.8617 min: 0.0779 max: 2.8830 weight: 0.4170 eval: 1.8950 min: 0.0779 max: 2.8830 weight: 0.4780 eval: 1.7048 min: 0.0779 max: 2.8830 weight: 0.2384 eval: 2.4517 min: 0.0779 max: 2.8830 weight: 0.3415 eval: 2.1301 min: 0.0779 max: 2.8830 weight: 0.2674 eval: 2.3613 min: 0.0779 max: 2.8830 weight: 0.3435 eval: 2.1241 min: 0.0779 max: 2.8830 weight: 0.4598 eval: 1.7615 min: 0.0779 max: 2.8830 weight: 0.3856 eval: 1.9929 min: 0.0779 max: 2.8830 weight: 0.3703 eval: 2.0405 min: 0.0779 max: 2.8830 weight: 0.5952 eval: 1.3395 min: 0.0779 max: 2.8830 weight: 0.1118 eval: 2.8462 min: 0.0779 max: 2.8830 weight: 0.2795 eval: 2.3236 min: 0.0779 max: 2.8830 weight: 0.4036 eval: 1.9366 min: 0.0779 max: 2.8830 weight: 0.1000 eval: 2.8830 min: 0.0779 max: 2.8830 weight: 0.8872 eval: 0.4293 min: 0.0779 max: 2.8830 weight: 0.6937 eval: 1.0325 min: 0.0779 max: 2.8830 weight: 0.8787 eval: 0.4558 min: 0.0779 max: 2.8830 weight: 0.6969 eval: 1.0227 min: 0.0779 max: 2.8830 weight: 0.8766 eval: 0.4624 min: 0.0779 max: 2.8830 weight: 0.5741 eval: 1.4053 min: 0.0779 max: 2.8830 weight: 0.4428 eval: 1.8145 min: 0.0779 max: 2.8830 weight: 0.5271 eval: 1.5519 min: 0.0779 max: 2.8830 weight: 0.4395 eval: 1.8247 min: 0.0779 max: 2.8830 weight: 0.4574 eval: 1.7690 min: 0.0779 max: 2.8830 weight: 0.8943 eval: 0.4074 min: 0.0779 max: 2.8830 weight: 0.8750 eval: 0.4674 min: 0.0779 max: 2.8830 weight: 0.3761 eval: 2.0224 min: 0.0779 max: 2.8830 weight: 0.9313 eval: 0.2920 min: 0.0779 max: 2.8830 weight: 0.9256 eval: 0.3099 min: 0.0779 max: 2.8830 weight: 0.8720 eval: 0.4768 min: 0.0779 max: 2.8830 weight: 0.8880 eval: 0.4269 min: 0.0779 max: 2.8830 weight: 0.8714 eval: 0.4786 min: 0.0779 max: 2.8830 weight: 0.6748 eval: 1.0914 min: 0.0779 max: 2.8830 weight: 0.8930 eval: 0.4114 min: 0.0779 max: 2.8830 weight: 0.8831 eval: 0.4422 min: 0.0779 max: 2.8830 weight: 0.8458 eval: 0.5584 min: 0.0779 max: 2.8830 weight: 0.1724 eval: 2.6574 min: 0.0779 max: 2.8830 weight: 0.4673 eval: 1.7381 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.9472 eval: 0.2424 min: 0.0779 max: 2.8830 weight: 0.8294 eval: 0.6097 min: 0.0779 max: 2.8830 weight: 0.8386 eval: 0.5808 min: 0.0779 max: 2.8830 weight: 0.8498 eval: 0.5461 min: 0.0779 max: 2.8830 weight: 0.8258 eval: 0.6209 min: 0.0779 max: 2.8830 weight: 0.8883 eval: 0.4261 min: 0.0779 max: 2.8830 weight: 0.9256 eval: 0.3099 min: 0.0779 max: 2.8830 weight: 0.8880 eval: 0.4269 min: 0.0779 max: 2.8830 weight: 0.9313 eval: 0.2920 min: 0.0779 max: 2.8830 weight: 0.8714 eval: 0.4786 min: 0.0779 max: 2.8830 weight: 0.8280 eval: 0.6141 min: 0.0779 max: 2.8830 weight: 0.8303 eval: 0.6067 min: 0.0779 max: 2.8830 weight: 0.7491 eval: 0.8597 min: 0.0779 max: 2.8830 weight: 0.7227 eval: 0.9421 min: 0.0779 max: 2.8830 weight: 0.8872 eval: 0.4293 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.2231 eval: 2.4992 min: 0.0779 max: 2.8830 weight: 0.2039 eval: 2.5591 min: 0.0779 max: 2.8830 weight: 0.2395 eval: 2.4481 min: 0.0779 max: 2.8830 weight: 0.2470 eval: 2.4248 min: 0.0779 max: 2.8830 weight: 0.2760 eval: 2.3344 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.8489 eval: 0.5487 min: 0.0779 max: 2.8830 weight: 0.8601 eval: 0.5138 min: 0.0779 max: 2.8830 weight: 0.8767 eval: 0.4621 min: 0.0779 max: 2.8830 weight: 0.3102 eval: 2.2279 min: 0.0779 max: 2.8830 weight: 0.8416 eval: 0.5714 min: 0.0779 max: 2.8830 weight: 0.5327 eval: 1.5343 min: 0.0779 max: 2.8830 weight: 0.5551 eval: 1.4646 min: 0.0779 max: 2.8830 weight: 0.3630 eval: 2.0633 min: 0.0779 max: 2.8830 weight: 0.3627 eval: 2.0641 min: 0.0779 max: 2.8830 weight: 0.8381 eval: 0.5823 min: 0.0779 max: 2.8830 weight: 0.9161 eval: 0.3393 min: 0.0779 max: 2.8830 weight: 0.8990 eval: 0.3926 min: 0.0779 max: 2.8830 weight: 0.8310 eval: 0.6045 min: 0.0779 max: 2.8830 weight: 0.8572 eval: 0.5228 min: 0.0779 max: 2.8830 weight: 0.8750 eval: 0.4674 min: 0.0779 max: 2.8830 weight: 0.8867 eval: 0.4310 min: 0.0779 max: 2.8830 weight: 0.8806 eval: 0.4499 min: 0.0779 max: 2.8830 weight: 0.8055 eval: 0.6839 min: 0.0779 max: 2.8830 weight: 0.4004 eval: 1.9466 min: 0.0779 max: 2.8830 weight: 0.3751 eval: 2.0256 min: 0.0779 max: 2.8830 weight: 0.3950 eval: 1.9635 min: 0.0779 max: 2.8830 weight: 0.4840 eval: 1.6861 min: 0.0779 max: 2.8830 weight: 0.7482 eval: 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weight: 0.8702 eval: 0.4823 min: 0.0779 max: 2.8830 weight: 0.8573 eval: 0.5228 min: 0.0779 max: 2.8830 weight: 0.8352 eval: 0.5913 min: 0.0779 max: 2.8830 weight: 0.8702 eval: 0.4823 min: 0.0779 max: 2.8830 weight: 0.7287 eval: 0.9233 min: 0.0779 max: 2.8830 weight: 0.8747 eval: 0.4684 min: 0.0779 max: 2.8830 weight: 0.8728 eval: 0.4743 min: 0.0779 max: 2.8830 weight: 0.8453 eval: 0.5602 min: 0.0779 max: 2.8830 weight: 0.8747 eval: 0.4684 min: 0.0779 max: 2.8830 weight: 0.7382 eval: 0.8938 min: 0.0779 max: 2.8830 weight: 0.8778 eval: 0.4589 min: 0.0779 max: 2.8830 weight: 0.8983 eval: 0.3948 min: 0.0779 max: 2.8830 weight: 0.8443 eval: 0.5631 min: 0.0779 max: 2.8830 weight: 0.8493 eval: 0.5477 min: 0.0779 max: 2.8830 weight: 0.8866 eval: 0.4313 min: 0.0779 max: 2.8830 weight: 0.9032 eval: 0.3796 min: 0.0779 max: 2.8830 weight: 0.9026 eval: 0.3813 min: 0.0779 max: 2.8830 weight: 0.8612 eval: 0.5105 min: 0.0779 max: 2.8830 weight: 0.8829 eval: 0.4427 min: 0.0779 max: 2.8830 weight: 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0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.9228 eval: 0.3185 min: 0.0779 max: 2.8830 weight: 0.9224 eval: 0.3196 min: 0.0779 max: 2.8830 weight: 0.8792 eval: 0.4545 min: 0.0779 max: 2.8830 weight: 0.9252 eval: 0.3109 min: 0.0779 max: 2.8830 weight: 0.9278 eval: 0.3030 min: 0.0779 max: 2.8830 weight: 0.8503 eval: 0.5446 min: 0.0779 max: 2.8830 weight: 0.8688 eval: 0.4869 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.6152 eval: 1.2771 min: 0.0779 max: 2.8830 weight: 0.3456 eval: 2.1176 min: 0.0779 max: 2.8830 weight: 0.3818 eval: 2.0046 min: 0.0779 max: 2.8830 weight: 0.3027 eval: 2.2513 min: 0.0779 max: 2.8830 weight: 0.2756 eval: 2.3357 min: 0.0779 max: 2.8830 weight: 0.3199 eval: 2.1974 min: 0.0779 max: 2.8830 weight: 0.2928 eval: 2.2820 min: 0.0779 max: 2.8830 weight: 0.2190 eval: 2.5121 min: 0.0779 max: 2.8830 weight: 0.2326 eval: 2.4696 min: 0.0779 max: 2.8830 weight: 0.2261 eval: 2.4900 min: 0.0779 max: 2.8830 weight: 0.2851 eval: 2.3061 min: 0.0779 max: 2.8830 weight: 0.8787 eval: 0.4560 min: 0.0779 max: 2.8830 weight: 0.3749 eval: 2.0263 min: 0.0779 max: 2.8830 weight: 0.5216 eval: 1.5688 min: 0.0779 max: 2.8830 weight: 0.3290 eval: 2.1692 min: 0.0779 max: 2.8830 weight: 0.3672 eval: 2.0503 min: 0.0779 max: 2.8830 weight: 0.8657 eval: 0.4964 min: 0.0779 max: 2.8830 weight: 0.9171 eval: 0.3363 min: 0.0779 max: 2.8830 weight: 0.6220 eval: 1.2560 min: 0.0779 max: 2.8830 weight: 0.3772 eval: 2.0190 min: 0.0779 max: 2.8830 weight: 0.6221 eval: 1.2558 min: 0.0779 max: 2.8830 weight: 0.8829 eval: 0.4429 min: 0.0779 max: 2.8830 weight: 0.6870 eval: 1.0534 min: 0.0779 max: 2.8830 weight: 0.6680 eval: 1.1126 min: 0.0779 max: 2.8830 weight: 0.7001 eval: 1.0127 min: 0.0779 max: 2.8830 weight: 0.4407 eval: 1.8210 min: 0.0779 max: 2.8830 weight: 0.4227 eval: 1.8771 min: 0.0779 max: 2.8830 weight: 0.8493 eval: 0.5475 min: 0.0779 max: 2.8830 Adding 12001 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -355.8520, CN propb: -355.8520 weights: 0.3674 constraints: 442 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 442 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 442 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 11559 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 11559 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 12001 # command: