# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0351/ # command:# Making conformation for sequence T0351 numbered 1 through 117 Created new target T0351 from T0351.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0351/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0351//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0351/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0351//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0351/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0351/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0351/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g0uG/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1g0uG expands to /projects/compbio/data/pdb/1g0u.pdb.gz 1g0uG:# T0351 read from 1g0uG/merged-good-all-a2m # 1g0uG read from 1g0uG/merged-good-all-a2m # adding 1g0uG to template set # found chain 1g0uG in template set T0351 4 :YDAIMYK 1g0uG 191 :EFAITHM # choosing archetypes in rotamer library T0351 11 :YPNAVSRKDFELR 1g0uG 201 :LGTEFSKNDLEVG T0351 24 :NDGNGSYI 1g0uG 216 :TKDKFFTL T0351 42 :TQAELETWWEELQKN 1g0uG 225 :SAENIEERLVAIAEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=4 Number of alignments=1 # 1g0uG read from 1g0uG/merged-good-all-a2m # found chain 1g0uG in template set Warning: unaligning (T0351)P57 because last residue in template chain is (1g0uG)D240 T0351 5 :DAIMYK 1g0uG 192 :FAITHM T0351 11 :YPNAVSRKDFELR 1g0uG 201 :LGTEFSKNDLEVG T0351 24 :NDGNGSYI 1g0uG 216 :TKDKFFTL T0351 42 :TQAELETWWEELQKN 1g0uG 225 :SAENIEERLVAIAEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=8 Number of alignments=2 # 1g0uG read from 1g0uG/merged-good-all-a2m # found chain 1g0uG in template set T0351 3 :LYDA 1g0uG 197 :MIDA T0351 11 :YPNAVSRKDFELR 1g0uG 201 :LGTEFSKNDLEVG T0351 30 :YIEKWNLRA 1g0uG 214 :VATKDKFFT T0351 41 :PTQAELETWWEELQK 1g0uG 224 :LSAENIEERLVAIAE Number of specific fragments extracted= 4 number of extra gaps= 0 total=12 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nkwL/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0351/1nkwL/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0351/1nkwL/merged-good-all-a2m.gz for input Trying 1nkwL/merged-good-all-a2m Error: Couldn't open file 1nkwL/merged-good-all-a2m or 1nkwL/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f1sA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1f1sA expands to /projects/compbio/data/pdb/1f1s.pdb.gz 1f1sA:# T0351 read from 1f1sA/merged-good-all-a2m # 1f1sA read from 1f1sA/merged-good-all-a2m # adding 1f1sA to template set # found chain 1f1sA in template set T0351 11 :YPNAVSRKDFELR 1f1sA 218 :YPNATGSTTVKIS T0351 25 :DGNGSYIEKWNLRAPLPTQAELETWWEELQKN 1f1sA 231 :DKSGKIIKEVPLSVTASTEDNFTKLLDKWNDV T0351 57 :PPYEPPDQVELL 1f1sA 269 :YDTNDSNMQKLN T0351 70 :Q 1f1sA 281 :Q T0351 77 :LARKQLEELNKTL 1f1sA 282 :KLDETNAKNIEAI Number of specific fragments extracted= 5 number of extra gaps= 0 total=17 Number of alignments=4 # 1f1sA read from 1f1sA/merged-good-all-a2m # found chain 1f1sA in template set T0351 13 :NAVSRKDFELR 1f1sA 220 :NATGSTTVKIS T0351 25 :DGNGSYIEKWNLRAPLPTQAELETWWEELQK 1f1sA 231 :DKSGKIIKEVPLSVTASTEDNFTKLLDKWND T0351 57 :PPYEP 1f1sA 269 :YDTND T0351 63 :DQVELLAQEL 1f1sA 274 :SNMQKLNQKL T0351 75 :EKLARKQLEE 1f1sA 284 :DETNAKNIEA Number of specific fragments extracted= 5 number of extra gaps= 0 total=22 Number of alignments=5 # 1f1sA read from 1f1sA/merged-good-all-a2m # found chain 1f1sA in template set T0351 12 :PNAVSRKDFELR 1f1sA 219 :PNATGSTTVKIS T0351 25 :DGNGSYIEKWNLRAPLPTQAELETWWEELQK 1f1sA 231 :DKSGKIIKEVPLSVTASTEDNFTKLLDKWND T0351 57 :PPYE 1f1sA 269 :YDTN T0351 62 :PDQVELL 1f1sA 273 :DSNMQKL T0351 82 :LEELNKTLGNELSDIKL 1f1sA 280 :NQKLDETNAKNIEAIKL Number of specific fragments extracted= 5 number of extra gaps= 0 total=27 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fi9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2fi9A expands to /projects/compbio/data/pdb/2fi9.pdb.gz 2fi9A:# T0351 read from 2fi9A/merged-good-all-a2m # 2fi9A read from 2fi9A/merged-good-all-a2m # adding 2fi9A to template set # found chain 2fi9A in template set Warning: unaligning (T0351)Y11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fi9A)F12 T0351 12 :PNAVSRKDF 2fi9A 13 :PGRAPIDAY T0351 21 :ELRNDG 2fi9A 25 :GFRFAD T0351 27 :N 2fi9A 35 :G T0351 29 :SYIEKWNLRAPLPTQAELETWWE 2fi9A 42 :SGIYGIDMTGPVPTQEDISRVLE T0351 54 :QKNPPYEPPDQVELLAQE 2fi9A 77 :GVELLRLPEELRVLLWEK T0351 75 :EKLARKQLEELN 2fi9A 103 :TGAAVRTFNVLL Number of specific fragments extracted= 6 number of extra gaps= 1 total=33 Number of alignments=7 # 2fi9A read from 2fi9A/merged-good-all-a2m # found chain 2fi9A in template set Warning: unaligning (T0351)Y11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fi9A)F12 T0351 12 :PNAVSRKDF 2fi9A 13 :PGRAPIDAY T0351 21 :ELRNDG 2fi9A 25 :GFRFAD T0351 27 :NG 2fi9A 35 :GS T0351 31 :IEKWNLRAPLPTQAELETWWE 2fi9A 44 :IYGIDMTGPVPTQEDISRVLE T0351 57 :PPYEPPDQVELLAQELS 2fi9A 79 :ELLRLPEELRVLLWEKR T0351 74 :QEKLARKQLEELNKT 2fi9A 102 :STGAAVRTFNVLLAE Number of specific fragments extracted= 6 number of extra gaps= 1 total=39 Number of alignments=8 # 2fi9A read from 2fi9A/merged-good-all-a2m # found chain 2fi9A in template set Warning: unaligning (T0351)Y11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fi9A)F12 T0351 12 :PNAVS 2fi9A 13 :PGRAP T0351 22 :LRNDGNG 2fi9A 18 :IDAYGNG T0351 29 :SYIEKWNLRAPLPTQAELETWWE 2fi9A 42 :SGIYGIDMTGPVPTQEDISRVLE T0351 54 :QKNPPYEPPDQVELLAQE 2fi9A 77 :GVELLRLPEELRVLLWEK Number of specific fragments extracted= 4 number of extra gaps= 1 total=43 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rqlA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rqlA expands to /projects/compbio/data/pdb/1rql.pdb.gz 1rqlA:# T0351 read from 1rqlA/merged-good-all-a2m # 1rqlA read from 1rqlA/merged-good-all-a2m # adding 1rqlA to template set # found chain 1rqlA in template set T0351 38 :APLPTQAELETWWEELQKN 1rqlA 75 :RQLPTEADIQEMYEEFEEI T0351 64 :QVELLAQELS 1rqlA 94 :LFAILPRYAS T0351 74 :QEKLARKQLEEL 1rqlA 107 :AVKEVIASLRER T0351 89 :LGNELSDIKLSLLSLKG 1rqlA 128 :YTREMMDIVAKEAALQG Number of specific fragments extracted= 4 number of extra gaps= 0 total=47 Number of alignments=10 # 1rqlA read from 1rqlA/merged-good-all-a2m # found chain 1rqlA in template set T0351 38 :APLPTQAELETWWEELQKN 1rqlA 75 :RQLPTEADIQEMYEEFEEI T0351 57 :PPYEPP 1rqlA 99 :PRYASP T0351 72 :LSQEKLARKQLEELN 1rqlA 105 :INAVKEVIASLRERG T0351 90 :GNELSDIKLSLLSLKG 1rqlA 129 :TREMMDIVAKEAALQG Number of specific fragments extracted= 4 number of extra gaps= 0 total=51 Number of alignments=11 # 1rqlA read from 1rqlA/merged-good-all-a2m # found chain 1rqlA in template set T0351 39 :PLPTQAELETWWEELQK 1rqlA 76 :QLPTEADIQEMYEEFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=52 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yrvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yrvA expands to /projects/compbio/data/pdb/1yrv.pdb.gz 1yrvA:# T0351 read from 1yrvA/merged-good-all-a2m # 1yrvA read from 1yrvA/merged-good-all-a2m # adding 1yrvA to template set # found chain 1yrvA in template set Warning: unaligning (T0351)N86 because last residue in template chain is (1yrvA)N148 T0351 46 :LETWWEELQK 1yrvA 105 :LSSILLALQV T0351 56 :NPPYEPPDQVELLAQELSQEKLARKQLEEL 1yrvA 118 :NPVLENPVNLEAARILVKDESLYRTILRLF Number of specific fragments extracted= 2 number of extra gaps= 0 total=54 Number of alignments=12 # 1yrvA read from 1yrvA/merged-good-all-a2m # found chain 1yrvA in template set Warning: unaligning (T0351)N86 because last residue in template chain is (1yrvA)N148 T0351 32 :EKWNLRAP 1yrvA 97 :EKWNTNYT T0351 46 :LETWWEELQK 1yrvA 105 :LSSILLALQV T0351 56 :NPPYEPPDQVELLAQELSQEKLARKQLEEL 1yrvA 118 :NPVLENPVNLEAARILVKDESLYRTILRLF Number of specific fragments extracted= 3 number of extra gaps= 0 total=57 Number of alignments=13 # 1yrvA read from 1yrvA/merged-good-all-a2m # found chain 1yrvA in template set Warning: unaligning (T0351)N86 because last residue in template chain is (1yrvA)N148 T0351 47 :ETWWEELQK 1yrvA 106 :SSILLALQV T0351 56 :NPPYEPPDQVELLAQELSQEKLARKQLEEL 1yrvA 118 :NPVLENPVNLEAARILVKDESLYRTILRLF Number of specific fragments extracted= 2 number of extra gaps= 0 total=59 Number of alignments=14 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nknA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nknA expands to /projects/compbio/data/pdb/1nkn.pdb.gz 1nknA:# T0351 read from 1nknA/merged-good-all-a2m # 1nknA read from 1nknA/merged-good-all-a2m # adding 1nknA to template set # found chain 1nknA in template set T0351 43 :QAELETWWEELQKN 1nknA 850 :LKQMDKMKEDLAKT T0351 63 :DQVELLAQELSQEKLARK 1nknA 866 :IKKELEEQNVTLLEQKND T0351 82 :LEELNKTLGNELSDIKLSLLSLKGDYAELEHHHHHH 1nknA 884 :LFGSMKQLEDKVEELLSKNYHLENEVARLKKLVGER Number of specific fragments extracted= 3 number of extra gaps= 0 total=62 Number of alignments=15 # 1nknA read from 1nknA/merged-good-all-a2m # found chain 1nknA in template set T0351 43 :QAELETWWEELQKN 1nknA 850 :LKQMDKMKEDLAKT T0351 63 :DQVELLAQELSQE 1nknA 866 :IKKELEEQNVTLL T0351 77 :LARKQLEELNKTLGNELSDIKLSLLSLKGDYAELEHHHHHH 1nknA 879 :EQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVGER Number of specific fragments extracted= 3 number of extra gaps= 0 total=65 Number of alignments=16 # 1nknA read from 1nknA/merged-good-all-a2m # found chain 1nknA in template set T0351 43 :QA 1nknA 867 :KK T0351 63 :DQVELLAQELSQEKLARKQLEELNKTLGNELSD 1nknA 869 :ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSK T0351 100 :LLSLKGDYAELEHHHHHH 1nknA 902 :NYHLENEVARLKKLVGER Number of specific fragments extracted= 3 number of extra gaps= 0 total=68 Number of alignments=17 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahqA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2ahqA expands to /projects/compbio/data/pdb/2ahq.pdb.gz 2ahqA:# T0351 read from 2ahqA/merged-good-all-a2m # 2ahqA read from 2ahqA/merged-good-all-a2m # adding 2ahqA to template set # found chain 2ahqA in template set Warning: unaligning (T0351)G90 because last residue in template chain is (2ahqA)G67 T0351 37 :RAPLPTQAELETWWEELQKN 2ahqA 12 :SAEGLTQGELMKLIKEIVEN T0351 57 :PPYEPP 2ahqA 33 :DKRKPY T0351 64 :QVELLAQELSQ 2ahqA 39 :SDQEIANILKE T0351 79 :RKQLEELNKTL 2ahqA 56 :RRTVAKYREML Number of specific fragments extracted= 4 number of extra gaps= 0 total=72 Number of alignments=18 # 2ahqA read from 2ahqA/merged-good-all-a2m # found chain 2ahqA in template set Warning: unaligning (T0351)G90 because last residue in template chain is (2ahqA)G67 T0351 36 :LRAPLPTQAELETWWEELQKNPPYEPPDQVELLAQELS 2ahqA 11 :ESAEGLTQGELMKLIKEIVENEDKRKPYSDQEIANILK T0351 79 :RKQLEELNKTL 2ahqA 56 :RRTVAKYREML Number of specific fragments extracted= 2 number of extra gaps= 0 total=74 Number of alignments=19 # 2ahqA read from 2ahqA/merged-good-all-a2m # found chain 2ahqA in template set Warning: unaligning (T0351)G90 because last residue in template chain is (2ahqA)G67 T0351 37 :RAPLPTQAELETWWEELQKNPPYEPPDQVELLAQELSQ 2ahqA 12 :SAEGLTQGELMKLIKEIVENEDKRKPYSDQEIANILKE T0351 79 :RKQLEELNKTL 2ahqA 56 :RRTVAKYREML Number of specific fragments extracted= 2 number of extra gaps= 0 total=76 Number of alignments=20 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ap1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2ap1A expands to /projects/compbio/data/pdb/2ap1.pdb.gz 2ap1A:Skipped atom 67, because occupancy 0.5 <= existing 0.500 in 2ap1A Skipped atom 69, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 71, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 319, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 655, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 728, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 730, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 732, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 734, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 736, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 738, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 740, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 742, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 744, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 746, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 748, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 759, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 765, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 833, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 837, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 839, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 841, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 843, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1053, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1055, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1376, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1380, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1382, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1384, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1386, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1388, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1390, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1392, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1718, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1722, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1724, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1726, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1728, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1730, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1869, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1873, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1875, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1877, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1983, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1987, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1989, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1991, because occupancy 0.500 <= existing 0.500 in 2ap1A # T0351 read from 2ap1A/merged-good-all-a2m # 2ap1A read from 2ap1A/merged-good-all-a2m # adding 2ap1A to template set # found chain 2ap1A in template set T0351 27 :NGSYIEKWNLRAPLPTQAELETW 2ap1A 20 :TRRLQWEKRVPTPHTSYSAFLDA T0351 78 :ARKQLEELNKTLG 2ap1A 43 :VCELVEEADQRFG Number of specific fragments extracted= 2 number of extra gaps= 0 total=78 Number of alignments=21 # 2ap1A read from 2ap1A/merged-good-all-a2m # found chain 2ap1A in template set T0351 16 :SRKDFELRN 2ap1A 8 :GGTKIALGV T0351 25 :DGNGSYIEKWNLRAPLPTQAELETWW 2ap1A 18 :DSTRRLQWEKRVPTPHTSYSAFLDAV T0351 79 :RKQLEELNKTLGN 2ap1A 44 :CELVEEADQRFGV Number of specific fragments extracted= 3 number of extra gaps= 0 total=81 Number of alignments=22 # 2ap1A read from 2ap1A/merged-good-all-a2m # found chain 2ap1A in template set T0351 17 :RKDFELR 2ap1A 9 :GTKIALG T0351 25 :DGNGSYIEKWNLRAPLPTQAELETWWEEL 2ap1A 18 :DSTRRLQWEKRVPTPHTSYSAFLDAVCEL T0351 82 :LEELNKTLG 2ap1A 47 :VEEADQRFG Number of specific fragments extracted= 3 number of extra gaps= 0 total=84 Number of alignments=23 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fjcA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1fjcA expands to /projects/compbio/data/pdb/1fjc.pdb.gz 1fjcA:# T0351 read from 1fjcA/merged-good-all-a2m # 1fjcA read from 1fjcA/merged-good-all-a2m # adding 1fjcA to template set # found chain 1fjcA in template set T0351 22 :LRNDGNGSYIEKWNLR 1fjcA 46 :VSQDGKSKGIAYIEFK T0351 42 :TQAELETWWEE 1fjcA 62 :SEADAEKNLEE Number of specific fragments extracted= 2 number of extra gaps= 0 total=86 Number of alignments=24 # 1fjcA read from 1fjcA/merged-good-all-a2m # found chain 1fjcA in template set T0351 22 :LRNDGNGSYIEKWNLR 1fjcA 46 :VSQDGKSKGIAYIEFK T0351 42 :TQAELETWWEE 1fjcA 62 :SEADAEKNLEE Number of specific fragments extracted= 2 number of extra gaps= 0 total=88 Number of alignments=25 # 1fjcA read from 1fjcA/merged-good-all-a2m # found chain 1fjcA in template set T0351 22 :LRNDGNGSYIEKWNLR 1fjcA 46 :VSQDGKSKGIAYIEFK T0351 42 :TQAELETWWEELQ 1fjcA 62 :SEADAEKNLEEKQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=90 Number of alignments=26 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1khhA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1khhA expands to /projects/compbio/data/pdb/1khh.pdb.gz 1khhA:# T0351 read from 1khhA/merged-good-all-a2m # 1khhA read from 1khhA/merged-good-all-a2m # adding 1khhA to template set # found chain 1khhA in template set T0351 50 :WEELQK 1khhA 173 :WGELMK T0351 57 :PPYEP 1khhA 179 :SKYTD T0351 64 :QVELLAQEL 1khhA 184 :ITAMFEETQ T0351 79 :RKQLEE 1khhA 193 :VPALLE Number of specific fragments extracted= 4 number of extra gaps= 0 total=94 Number of alignments=27 # 1khhA read from 1khhA/merged-good-all-a2m # found chain 1khhA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=94 # 1khhA read from 1khhA/merged-good-all-a2m # found chain 1khhA in template set T0351 42 :TQAELETWWEELQK 1khhA 91 :NDGVFQRLQNWALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=95 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xm2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0351/1xm2A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0351/1xm2A/merged-good-all-a2m.gz for input Trying 1xm2A/merged-good-all-a2m Error: Couldn't open file 1xm2A/merged-good-all-a2m or 1xm2A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vorO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0351/1vorO/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0351/1vorO/merged-good-all-a2m.gz for input Trying 1vorO/merged-good-all-a2m Error: Couldn't open file 1vorO/merged-good-all-a2m or 1vorO/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gl6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0351/1gl6A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0351/1gl6A/merged-good-all-a2m.gz for input Trying 1gl6A/merged-good-all-a2m Error: Couldn't open file 1gl6A/merged-good-all-a2m or 1gl6A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fseA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1fseA expands to /projects/compbio/data/pdb/1fse.pdb.gz 1fseA:Skipped atom 52, because occupancy 0.500 <= existing 0.500 in 1fseA Skipped atom 54, because occupancy 0.500 <= existing 0.500 in 1fseA Skipped atom 56, because occupancy 0.500 <= existing 0.500 in 1fseA Skipped atom 58, because occupancy 0.500 <= existing 0.500 in 1fseA Skipped atom 164, because occupancy 0.500 <= existing 0.500 in 1fseA Skipped atom 166, because occupancy 0.500 <= existing 0.500 in 1fseA Skipped atom 168, because occupancy 0.500 <= existing 0.500 in 1fseA Skipped atom 286, because occupancy 1.000 <= existing 1.000 in 1fseA Skipped atom 288, because occupancy 0.500 <= existing 0.500 in 1fseA Skipped atom 290, because occupancy 0.500 <= existing 0.500 in 1fseA Skipped atom 292, because occupancy 0.500 <= existing 0.500 in 1fseA # T0351 read from 1fseA/merged-good-all-a2m # 1fseA read from 1fseA/merged-good-all-a2m # adding 1fseA to template set # found chain 1fseA in template set Warning: unaligning (T0351)R37 because first residue in template chain is (1fseA)S8 T0351 38 :APLPT 1fseA 9 :KPLLT T0351 44 :AELETWWEELQK 1fseA 14 :KREREVFELLVQ T0351 59 :YEPPD 1fseA 26 :DKTTK T0351 66 :E 1fseA 31 :E T0351 68 :LAQEL 1fseA 32 :IASEL T0351 73 :SQEKLARKQLEELNKTLG 1fseA 38 :ISEKTVRNHISNAMQKLG T0351 93 :LSDIKLSLL 1fseA 59 :RSQAVVELL Number of specific fragments extracted= 7 number of extra gaps= 0 total=102 Number of alignments=28 # 1fseA read from 1fseA/merged-good-all-a2m # found chain 1fseA in template set Warning: unaligning (T0351)R37 because first residue in template chain is (1fseA)S8 T0351 38 :APLPTQ 1fseA 9 :KPLLTK T0351 45 :ELETWWEELQKNP 1fseA 15 :REREVFELLVQDK T0351 64 :QVELLAQELS 1fseA 28 :TTKEIASELF T0351 74 :QEKLARKQLEELNKTLGN 1fseA 39 :SEKTVRNHISNAMQKLGV T0351 92 :ELSDIKLSLLSL 1fseA 58 :GRSQAVVELLRM Number of specific fragments extracted= 5 number of extra gaps= 0 total=107 Number of alignments=29 # 1fseA read from 1fseA/merged-good-all-a2m # found chain 1fseA in template set Warning: unaligning (T0351)R37 because first residue in template chain is (1fseA)S8 T0351 38 :APLPT 1fseA 9 :KPLLT T0351 44 :AELETWWEELQKNPP 1fseA 14 :KREREVFELLVQDKT T0351 64 :QVELLAQELSQEKLARKQLEELNKTLG 1fseA 29 :TKEIASELFISEKTVRNHISNAMQKLG Number of specific fragments extracted= 3 number of extra gaps= 0 total=110 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xqaA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0351 read from 1xqaA/merged-good-all-a2m # 1xqaA read from 1xqaA/merged-good-all-a2m # found chain 1xqaA in training set T0351 15 :VSRKDFELRNDGNGSY 1xqaA 32 :RGNAFAVMRDNDGFIL T0351 31 :IEK 1xqaA 49 :LMK T0351 36 :LRAP 1xqaA 55 :VQYP T0351 40 :LPTQAELETWWEELQKNPPYEPP 1xqaA 67 :QESEEQVDKINQRLKEDGFLVEP Number of specific fragments extracted= 4 number of extra gaps= 0 total=114 Number of alignments=31 # 1xqaA read from 1xqaA/merged-good-all-a2m # found chain 1xqaA in training set T0351 15 :VSRKDFELRNDGNGSY 1xqaA 32 :RGNAFAVMRDNDGFIL T0351 31 :IEK 1xqaA 49 :LMK T0351 35 :NLRAP 1xqaA 54 :EVQYP T0351 40 :LPTQAELETWWEELQKN 1xqaA 67 :QESEEQVDKINQRLKED T0351 57 :PPYEP 1xqaA 85 :FLVEP Number of specific fragments extracted= 5 number of extra gaps= 0 total=119 Number of alignments=32 # 1xqaA read from 1xqaA/merged-good-all-a2m # found chain 1xqaA in training set T0351 17 :RKDFELRNDGNGSYIEKWNLRAPLPTQAELETWWEELQKNP 1xqaA 44 :GFILTLMKGKEVQYPKTFHVGFPQESEEQVDKINQRLKEDG T0351 58 :PYEPP 1xqaA 86 :LVEPP Number of specific fragments extracted= 2 number of extra gaps= 0 total=121 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cll/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1cll expands to /projects/compbio/data/pdb/1cll.pdb.gz 1cll:Warning: there is no chain 1cll will retry with 1cllA Skipped atom 897, because occupancy 0.500 <= existing 0.500 in 1cll Skipped atom 899, because occupancy 0.500 <= existing 0.500 in 1cll Skipped atom 901, because occupancy 0.500 <= existing 0.500 in 1cll # T0351 read from 1cll/merged-good-all-a2m # 1cll read from 1cll/merged-good-all-a2m # adding 1cll to template set # found chain 1cll in template set T0351 3 :LYDAIMYKYPNAVSRKD 1cll 12 :FKEAFSLFDKDGDGTIT T0351 24 :ND 1cll 38 :SL T0351 38 :APLPTQAELETWWEELQKNPPYE 1cll 40 :GQNPTEAELQDMINEVDADGNGT T0351 62 :PDQVELLAQELSQEKLARKQLEE 1cll 66 :PEFLTMMARKMKDTDSEEEIREA T0351 86 :NKTL 1cll 89 :FRVF T0351 90 :GNELSDI 1cll 102 :AAELRHV T0351 98 :LSLLSLKGDYAELEH 1cll 109 :MTNLGEKLTDEEVDE Number of specific fragments extracted= 7 number of extra gaps= 0 total=128 Number of alignments=34 # 1cll read from 1cll/merged-good-all-a2m # found chain 1cll in template set T0351 3 :LYDAIMYKYPNAVSRKD 1cll 12 :FKEAFSLFDKDGDGTIT T0351 34 :WNLRAPLPTQAELETWWEELQKNPPYE 1cll 36 :MRSLGQNPTEAELQDMINEVDADGNGT T0351 63 :DQVELLAQELSQEKLARKQLEELNKTLGN 1cll 70 :TMMARKMKDTDSEEEIREAFRVFDKDGNG T0351 92 :ELSDIKLSLLSLKGDYAELE 1cll 101 :SAAELRHVMTNLGEKLTDEE Number of specific fragments extracted= 4 number of extra gaps= 0 total=132 Number of alignments=35 # 1cll read from 1cll/merged-good-all-a2m # found chain 1cll in template set T0351 24 :NDGNGSY 1cll 21 :KDGDGTI T0351 39 :PLPTQAELETWWEELQKNPPYE 1cll 41 :QNPTEAELQDMINEVDADGNGT T0351 61 :PPDQVELLAQELSQEKLARKQLEELNK 1cll 65 :FPEFLTMMARKMKDTDSEEEIREAFRV T0351 89 :L 1cll 92 :F T0351 90 :GNELSD 1cll 102 :AAELRH Number of specific fragments extracted= 5 number of extra gaps= 0 total=137 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1jl5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1jl5A expands to /projects/compbio/data/pdb/1jl5.pdb.gz 1jl5A:# T0351 read from 1jl5A/merged-good-all-a2m # 1jl5A read from 1jl5A/merged-good-all-a2m # adding 1jl5A to template set # found chain 1jl5A in template set Warning: unaligning (T0351)P41 because first residue in template chain is (1jl5A)K1034 T0351 42 :TQAELETWWEELQKN 1jl5A 1035 :SKTEYYNAWSEWERN T0351 57 :PPYEPP 1jl5A 1051 :PPGNGE T0351 74 :QEKLARKQLEELNKT 1jl5A 1057 :QREMAVSRLRDCLDR Number of specific fragments extracted= 3 number of extra gaps= 0 total=140 Number of alignments=37 # 1jl5A read from 1jl5A/merged-good-all-a2m # found chain 1jl5A in template set Warning: unaligning (T0351)P41 because first residue in template chain is (1jl5A)K1034 T0351 42 :TQAELETWWEELQKN 1jl5A 1035 :SKTEYYNAWSEWERN T0351 57 :PPYEPP 1jl5A 1051 :PPGNGE T0351 74 :QEKLARKQLEELNKTL 1jl5A 1057 :QREMAVSRLRDCLDRQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=143 Number of alignments=38 # 1jl5A read from 1jl5A/merged-good-all-a2m # found chain 1jl5A in template set Warning: unaligning (T0351)P41 because first residue in template chain is (1jl5A)K1034 T0351 42 :TQAELETWWEELQKNPPYEPPDQVELLAQEL 1jl5A 1035 :SKTEYYNAWSEWERNAPPGNGEQREMAVSRL T0351 79 :RKQL 1jl5A 1066 :RDCL Number of specific fragments extracted= 2 number of extra gaps= 0 total=145 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vhfA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0351/1vhfA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0351/1vhfA/merged-good-all-a2m.gz for input Trying 1vhfA/merged-good-all-a2m Error: Couldn't open file 1vhfA/merged-good-all-a2m or 1vhfA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1swvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1swvA expands to /projects/compbio/data/pdb/1swv.pdb.gz 1swvA:# T0351 read from 1swvA/merged-good-all-a2m # 1swvA read from 1swvA/merged-good-all-a2m # adding 1swvA to template set # found chain 1swvA in template set T0351 38 :APLPTQAELETWWEELQK 1swvA 75 :RQLPTEADIQEMYEEFEE T0351 63 :DQVELLAQE 1swvA 93 :ILFAILPRY T0351 72 :LSQEKLARKQLEEL 1swvA 105 :INGVKEVIASLRER T0351 89 :LGNELSDIKLSLLSLKG 1swvA 128 :YTREMMDIVAKEAALQG Number of specific fragments extracted= 4 number of extra gaps= 0 total=149 Number of alignments=40 # 1swvA read from 1swvA/merged-good-all-a2m # found chain 1swvA in template set T0351 38 :APLPTQAELETWWEELQKN 1swvA 75 :RQLPTEADIQEMYEEFEEI T0351 57 :PPYEPP 1swvA 99 :PRYASP T0351 72 :LSQEKLARKQLEELN 1swvA 105 :INGVKEVIASLRERG T0351 90 :GNELSDIKLSLLSLKG 1swvA 129 :TREMMDIVAKEAALQG Number of specific fragments extracted= 4 number of extra gaps= 0 total=153 Number of alignments=41 # 1swvA read from 1swvA/merged-good-all-a2m # found chain 1swvA in template set T0351 39 :PLPTQAELETWWEELQK 1swvA 76 :QLPTEADIQEMYEEFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=154 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ggzA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ggzA expands to /projects/compbio/data/pdb/1ggz.pdb.gz 1ggzA:# T0351 read from 1ggzA/merged-good-all-a2m # 1ggzA read from 1ggzA/merged-good-all-a2m # adding 1ggzA to template set # found chain 1ggzA in template set T0351 38 :APLPTQAELETWWEELQKNPPYE 1ggzA 40 :GQNPTEAELRDMMSEIDRDGNGT T0351 62 :PDQVELLAQELSQEKLARKQ 1ggzA 66 :PEFLGMMARKMKDTDNEEEI T0351 83 :EELNKTL 1ggzA 86 :REAFRVF T0351 90 :GNELSDIK 1ggzA 102 :AAELRHVM T0351 99 :SLLSLKGDYAELEH 1ggzA 110 :TRLGEKLSDEEVDE Number of specific fragments extracted= 5 number of extra gaps= 0 total=159 Number of alignments=42 # 1ggzA read from 1ggzA/merged-good-all-a2m # found chain 1ggzA in template set T0351 3 :LYDAIMYKYPNAVSRKD 1ggzA 12 :FKEAFSLFDKDGDGCIT T0351 37 :RAPLPTQAELETWWEELQKNPPYE 1ggzA 39 :LGQNPTEAELRDMMSEIDRDGNGT T0351 62 :P 1ggzA 66 :P T0351 63 :DQVELLAQELSQEKLARKQLEELNKTLGN 1ggzA 70 :GMMARKMKDTDNEEEIREAFRVFDKDGNG T0351 92 :ELSDIKLSLLSLKGDYAELE 1ggzA 101 :SAAELRHVMTRLGEKLSDEE Number of specific fragments extracted= 5 number of extra gaps= 0 total=164 Number of alignments=43 # 1ggzA read from 1ggzA/merged-good-all-a2m # found chain 1ggzA in template set T0351 24 :NDGNGSY 1ggzA 21 :KDGDGCI T0351 39 :PLPTQAELETWWEELQKNPPYE 1ggzA 41 :QNPTEAELRDMMSEIDRDGNGT T0351 61 :PPDQVELLAQELSQEKLARKQLEEL 1ggzA 65 :FPEFLGMMARKMKDTDNEEEIREAF T0351 87 :KTL 1ggzA 90 :RVF T0351 90 :GNELSDI 1ggzA 102 :AAELRHV Number of specific fragments extracted= 5 number of extra gaps= 0 total=169 Number of alignments=44 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1z5bA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1z5bA expands to /projects/compbio/data/pdb/1z5b.pdb.gz 1z5bA:# T0351 read from 1z5bA/merged-good-all-a2m # 1z5bA read from 1z5bA/merged-good-all-a2m # adding 1z5bA to template set # found chain 1z5bA in template set T0351 1 :MILYDAIMYKY 1z5bA 185 :SRIYEYIKRTY T0351 15 :VSRKDFELRN 1z5bA 198 :TPYAEFIFKD T0351 25 :DGNGSYIEKWNLRAPLP 1z5bA 209 :EGNVTYYPRLTNKIPKP T0351 42 :TQAELET 1z5bA 237 :DREEIKI T0351 53 :LQKNPPYEP 1z5bA 244 :LINNLKRDY T0351 63 :DQVELLAQELS 1z5bA 253 :TIKEFLVNEFQ T0351 76 :KLARKQL 1z5bA 267 :DTTADKI T0351 98 :LSLLSLKGDY 1z5bA 274 :LELAGLKPNK Number of specific fragments extracted= 8 number of extra gaps= 0 total=177 Number of alignments=45 # 1z5bA read from 1z5bA/merged-good-all-a2m # found chain 1z5bA in template set T0351 2 :ILYDAIMYKY 1z5bA 186 :RIYEYIKRTY T0351 15 :VSRKDFELRNDG 1z5bA 198 :TPYAEFIFKDPE T0351 27 :NGSYIEKWNLRAPLP 1z5bA 211 :NVTYYPRLTNKIPKP T0351 42 :TQAELETWWEE 1z5bA 237 :DREEIKILINN T0351 57 :PPYEP 1z5bA 248 :LKRDY T0351 63 :D 1z5bA 253 :T T0351 78 :ARKQLEELNKTLGNELSDIKLSLLSLKGD 1z5bA 254 :IKEFLVNEFQSIGDTTADKILELAGLKPN Number of specific fragments extracted= 7 number of extra gaps= 0 total=184 Number of alignments=46 # 1z5bA read from 1z5bA/merged-good-all-a2m # found chain 1z5bA in template set T0351 43 :QAELETWWEELQK 1z5bA 437 :EKEIKNALMEVAR T0351 67 :LLAQELSQEKLARKQLEEL 1z5bA 450 :KLKQYLSEKRKEQEAKKKL Number of specific fragments extracted= 2 number of extra gaps= 0 total=186 Number of alignments=47 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fezA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1fezA expands to /projects/compbio/data/pdb/1fez.pdb.gz 1fezA:# T0351 read from 1fezA/merged-good-all-a2m # 1fezA read from 1fezA/merged-good-all-a2m # adding 1fezA to template set # found chain 1fezA in template set T0351 39 :PLPTQAELETWWEELQKN 1fezA 76 :QLPTEADIQEMYEEFEEI T0351 64 :QVELLAQELS 1fezA 94 :LFAILPRYAS T0351 74 :QEKLARKQLEEL 1fezA 107 :AVKEVIASLRER T0351 89 :LGNELSDIKLSLLSLKG 1fezA 128 :YTREMMDIVAKEAALQG Number of specific fragments extracted= 4 number of extra gaps= 0 total=190 Number of alignments=48 # 1fezA read from 1fezA/merged-good-all-a2m # found chain 1fezA in template set T0351 39 :PLPTQAELETWWEELQKN 1fezA 76 :QLPTEADIQEMYEEFEEI T0351 57 :PPYEPP 1fezA 99 :PRYASP T0351 76 :KLARKQLEELNKTL 1fezA 106 :NAVKEVIASLRERG T0351 90 :GNELSDIKLSLLSLKG 1fezA 129 :TREMMDIVAKEAALQG Number of specific fragments extracted= 4 number of extra gaps= 0 total=194 Number of alignments=49 # 1fezA read from 1fezA/merged-good-all-a2m # found chain 1fezA in template set T0351 40 :LPTQAELETWWEELQK 1fezA 77 :LPTEADIQEMYEEFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=195 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1z8uA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1z8uA expands to /projects/compbio/data/pdb/1z8u.pdb.gz 1z8uA:# T0351 read from 1z8uA/merged-good-all-a2m # 1z8uA read from 1z8uA/merged-good-all-a2m # adding 1z8uA to template set # found chain 1z8uA in template set T0351 40 :LPTQAELETWWEELQK 1z8uA 31 :LVSEEDMVTVVEDWMN T0351 63 :DQVELLAQELS 1z8uA 47 :FYINYYRQQVT T0351 74 :QEKLARKQLEELNKTLGNEL 1z8uA 62 :ERDKALQELRQELNTLANPF T0351 94 :SDIK 1z8uA 83 :AKYR Number of specific fragments extracted= 4 number of extra gaps= 0 total=199 Number of alignments=50 # 1z8uA read from 1z8uA/merged-good-all-a2m # found chain 1z8uA in template set T0351 38 :APLPTQAELETWWEELQKN 1z8uA 29 :DALVSEEDMVTVVEDWMNF T0351 57 :PPYEPPDQVELLAQEL 1z8uA 55 :QVTGEPQERDKALQEL T0351 79 :RKQLEELNKTL 1z8uA 71 :RQELNTLANPF T0351 107 :YAELEHH 1z8uA 82 :LAKYRDF Number of specific fragments extracted= 4 number of extra gaps= 0 total=203 Number of alignments=51 # 1z8uA read from 1z8uA/merged-good-all-a2m # found chain 1z8uA in template set T0351 40 :LPTQAELETWWEELQK 1z8uA 31 :LVSEEDMVTVVEDWMN T0351 56 :NPPYEPPDQVELLAQEL 1z8uA 54 :QQVTGEPQERDKALQEL T0351 79 :RKQLEELNKTLGNELSDI 1z8uA 71 :RQELNTLANPFLAKYRDF Number of specific fragments extracted= 3 number of extra gaps= 0 total=206 Number of alignments=52 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mx0A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0351/1mx0A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0351/1mx0A/merged-good-all-a2m.gz for input Trying 1mx0A/merged-good-all-a2m Error: Couldn't open file 1mx0A/merged-good-all-a2m or 1mx0A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ahr/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ahr expands to /projects/compbio/data/pdb/1ahr.pdb.gz 1ahr:Warning: there is no chain 1ahr will retry with 1ahrA # T0351 read from 1ahr/merged-good-all-a2m # 1ahr read from 1ahr/merged-good-all-a2m # adding 1ahr to template set # found chain 1ahr in template set T0351 3 :LYDAIMYKYPNAVSRKD 1ahr 12 :FKEAFSLFDKDGDGTIT T0351 37 :RAPLPTQAELETWWEELQKNPPYE 1ahr 39 :LGQNPTEAELQDMINEVDADGNGT T0351 62 :PDQVELLAQEL 1ahr 66 :PEFLTMMARKM T0351 73 :SQEKLARKQLEEL 1ahr 78 :DSEEEIREAFRVF T0351 90 :GNELSDI 1ahr 102 :AAELRHV T0351 98 :LSLLSLKGDYAELEHHHH 1ahr 109 :MTNLGEKLTDEEVDEMIR Number of specific fragments extracted= 6 number of extra gaps= 0 total=212 Number of alignments=53 # 1ahr read from 1ahr/merged-good-all-a2m # found chain 1ahr in template set T0351 3 :LYDAIMYKYPNAVSRKD 1ahr 12 :FKEAFSLFDKDGDGTIT T0351 34 :WNLRAPLPTQAELETWWEELQKNPPYE 1ahr 36 :MRSLGQNPTEAELQDMINEVDADGNGT T0351 62 :PDQVELLAQELS 1ahr 66 :PEFLTMMARKMK T0351 74 :QEKLARKQLEELNKTLGN 1ahr 81 :SEEEIREAFRVFDKDGNG T0351 92 :ELSDIKLSLLSLKGDYAELE 1ahr 101 :SAAELRHVMTNLGEKLTDEE Number of specific fragments extracted= 5 number of extra gaps= 0 total=217 Number of alignments=54 # 1ahr read from 1ahr/merged-good-all-a2m # found chain 1ahr in template set T0351 38 :APLPTQAELETWWEELQKNPPYE 1ahr 40 :GQNPTEAELQDMINEVDADGNGT T0351 61 :PPDQVELLAQEL 1ahr 65 :FPEFLTMMARKM T0351 73 :SQEKLARKQLEELNKT 1ahr 78 :DSEEEIREAFRVFDKD T0351 90 :GNELSDI 1ahr 102 :AAELRHV Number of specific fragments extracted= 4 number of extra gaps= 0 total=221 Number of alignments=55 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2a3qA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2a3qA expands to /projects/compbio/data/pdb/2a3q.pdb.gz 2a3qA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0351 read from 2a3qA/merged-good-all-a2m # 2a3qA read from 2a3qA/merged-good-all-a2m # adding 2a3qA to template set # found chain 2a3qA in template set Warning: unaligning (T0351)P41 because of BadResidue code BAD_PEPTIDE in next template residue (2a3qA)T30 Warning: unaligning (T0351)T42 because of BadResidue code BAD_PEPTIDE at template residue (2a3qA)T30 Warning: unaligning (T0351)P61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a3qA)W47 Warning: unaligning (T0351)P62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a3qA)W47 Warning: unaligning (T0351)D63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a3qA)Q49 Warning: unaligning (T0351)Q64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a3qA)Q49 T0351 37 :RAPL 2a3qA 25 :FSPE T0351 43 :QAELETWWEELQKN 2a3qA 31 :LEDIRRLHAEFAAE T0351 60 :E 2a3qA 45 :R T0351 65 :VE 2a3qA 50 :FH T0351 67 :LLAQELSQEKLARKQLE 2a3qA 55 :NLLLALVGEVGELAELF T0351 84 :ELNKTLGNELSDIKLSLLSLKG 2a3qA 87 :KERAALQEELSDVLIYLVALAA T0351 106 :DYAELEHHHHHH 2a3qA 121 :KMDTNRQRYPVH Number of specific fragments extracted= 7 number of extra gaps= 2 total=228 Number of alignments=56 # 2a3qA read from 2a3qA/merged-good-all-a2m # found chain 2a3qA in template set Warning: unaligning (T0351)P41 because of BadResidue code BAD_PEPTIDE in next template residue (2a3qA)T30 Warning: unaligning (T0351)T42 because of BadResidue code BAD_PEPTIDE at template residue (2a3qA)T30 Warning: unaligning (T0351)P57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a3qA)W47 T0351 38 :APL 2a3qA 26 :SPE T0351 43 :QAEL 2a3qA 31 :LEDI T0351 47 :ETWWEELQKN 2a3qA 36 :RLHAEFAAER T0351 61 :PPDQVELLAQELS 2a3qA 52 :QPRNLLLALVGEV T0351 74 :QEKLA 2a3qA 66 :ELAEL T0351 79 :RKQLEELNKTLGN 2a3qA 89 :RAALQEELSDVLI T0351 96 :IK 2a3qA 102 :YL T0351 98 :LSLLSLKGDYAELEHHHHHH 2a3qA 114 :LPQAVISKMDTNRQRYPVHL Number of specific fragments extracted= 8 number of extra gaps= 2 total=236 Number of alignments=57 # 2a3qA read from 2a3qA/merged-good-all-a2m # found chain 2a3qA in template set Warning: unaligning (T0351)P41 because of BadResidue code BAD_PEPTIDE in next template residue (2a3qA)T30 Warning: unaligning (T0351)T42 because of BadResidue code BAD_PEPTIDE at template residue (2a3qA)T30 Warning: unaligning (T0351)P57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a3qA)W47 Warning: unaligning (T0351)Y59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a3qA)W47 Warning: unaligning (T0351)E60 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a3qA)Q49 Warning: unaligning (T0351)P61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a3qA)Q49 T0351 38 :APL 2a3qA 26 :SPE T0351 43 :QAEL 2a3qA 31 :LEDI T0351 47 :ETWWEELQKN 2a3qA 36 :RLHAEFAAER T0351 62 :PDQVELLAQEL 2a3qA 50 :FHQPRNLLLAL T0351 76 :KLARKQLEEL 2a3qA 61 :VGEVGELAEL T0351 86 :NKTLGNELSDIKL 2a3qA 89 :RAALQEELSDVLI Number of specific fragments extracted= 6 number of extra gaps= 2 total=242 Number of alignments=58 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1exrA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0351 read from 1exrA/merged-good-all-a2m # 1exrA read from 1exrA/merged-good-all-a2m # found chain 1exrA in training set T0351 38 :APLPTQAELETWWEELQKNPPYE 1exrA 40 :GQNPTEAELQDMINEVDADGNGT T0351 62 :PDQVELLAQELSQEKLARK 1exrA 66 :PEFLSLMARKMKEQDSEEE T0351 82 :LEELNKTL 1exrA 85 :LIEAFKVF T0351 90 :GNELSDI 1exrA 102 :AAELRHV T0351 98 :LSLLSLKGDYAELEH 1exrA 109 :MTNLGEKLTDDEVDE Number of specific fragments extracted= 5 number of extra gaps= 0 total=247 Number of alignments=59 # 1exrA read from 1exrA/merged-good-all-a2m # found chain 1exrA in training set T0351 24 :NDGNGSY 1exrA 21 :KDGDGTI T0351 38 :APLPTQAELETWWEELQKNPPYE 1exrA 40 :GQNPTEAELQDMINEVDADGNGT T0351 62 :PDQVELLAQELS 1exrA 66 :PEFLSLMARKMK T0351 74 :QEKLARKQLEELNKTLGNEL 1exrA 81 :SEEELIEAFKVFDRDGNGLI T0351 94 :SDIKLSLLSLKGDYAELE 1exrA 103 :AELRHVMTNLGEKLTDDE Number of specific fragments extracted= 5 number of extra gaps= 0 total=252 Number of alignments=60 # 1exrA read from 1exrA/merged-good-all-a2m # found chain 1exrA in training set T0351 24 :NDGNGSY 1exrA 21 :KDGDGTI T0351 39 :PLPTQAELETWWEELQKNPPYE 1exrA 41 :QNPTEAELQDMINEVDADGNGT T0351 61 :PPDQVELLAQELSQEKLARKQLEELNK 1exrA 65 :FPEFLSLMARKMKEQDSEEELIEAFKV T0351 89 :L 1exrA 92 :F T0351 90 :GNELSDI 1exrA 102 :AAELRHV Number of specific fragments extracted= 5 number of extra gaps= 0 total=257 Number of alignments=61 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yirA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yirA expands to /projects/compbio/data/pdb/1yir.pdb.gz 1yirA:# T0351 read from 1yirA/merged-good-all-a2m # 1yirA read from 1yirA/merged-good-all-a2m # adding 1yirA to template set # found chain 1yirA in template set T0351 3 :LYDAIMYKYPNAVSRKDFELRNDGNG 1yirA 26 :MMQAVLHNYPNAEVEWEFRCRNQEDL T0351 43 :QAELETWWEELQKNP 1yirA 55 :LPAIREQLEYLAGLA T0351 60 :EPPDQVELLAQ 1yirA 70 :ISDEQLAFLER T0351 76 :KLARKQLE 1yirA 86 :PDFIRFLG Number of specific fragments extracted= 4 number of extra gaps= 0 total=261 Number of alignments=62 # 1yirA read from 1yirA/merged-good-all-a2m # found chain 1yirA in template set T0351 3 :LYDAIMYKYPNA 1yirA 26 :MMQAVLHNYPNA T0351 17 :RKDFELRNDGNGSY 1yirA 38 :EVEWEFRCRNQEDL T0351 43 :QAELETWWEELQKNP 1yirA 55 :LPAIREQLEYLAGLA T0351 60 :EPPDQVELLAQ 1yirA 70 :ISDEQLAFLER T0351 75 :EKLARKQL 1yirA 85 :APDFIRFL Number of specific fragments extracted= 5 number of extra gaps= 0 total=266 Number of alignments=63 # 1yirA read from 1yirA/merged-good-all-a2m # found chain 1yirA in template set T0351 3 :LYDAIMYKYPNAV 1yirA 26 :MMQAVLHNYPNAE T0351 22 :L 1yirA 39 :V T0351 33 :KWNLRAPLPT 1yirA 40 :EWEFRCRNQE T0351 44 :AELETWWEELQKNPP 1yirA 56 :PAIREQLEYLAGLAI T0351 61 :PPDQVELLAQ 1yirA 71 :SDEQLAFLER T0351 88 :TLGNELSDIKLS 1yirA 87 :DFIRFLGLFRFN Number of specific fragments extracted= 6 number of extra gaps= 0 total=272 Number of alignments=64 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rypA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rypA expands to /projects/compbio/data/pdb/1ryp.pdb.gz 1rypA:# T0351 read from 1rypA/merged-good-all-a2m # 1rypA read from 1rypA/merged-good-all-a2m # adding 1rypA to template set # found chain 1rypA in template set T0351 4 :YDAIMYK 1rypA 204 :EFAITHM T0351 11 :YPNAVSRKDFELR 1rypA 214 :LGTEFSKNDLEVG T0351 24 :NDGNGSYI 1rypA 229 :TKDKFFTL T0351 42 :TQAELETWWEELQKN 1rypA 237 :SAENIEERLVAIAEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=276 Number of alignments=65 # 1rypA read from 1rypA/merged-good-all-a2m # found chain 1rypA in template set Warning: unaligning (T0351)P57 because last residue in template chain is (1rypA)D252 T0351 5 :DAIMYK 1rypA 205 :FAITHM T0351 11 :YPNAVSRKDFELR 1rypA 214 :LGTEFSKNDLEVG T0351 24 :NDGNGSYI 1rypA 229 :TKDKFFTL T0351 42 :TQAELETWWEELQKN 1rypA 237 :SAENIEERLVAIAEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=280 Number of alignments=66 # 1rypA read from 1rypA/merged-good-all-a2m # found chain 1rypA in template set T0351 3 :LYDA 1rypA 210 :MIDA T0351 11 :YPNAVSRKDFELR 1rypA 214 :LGTEFSKNDLEVG T0351 30 :YIEKWNLRA 1rypA 227 :VATKDKFFT T0351 41 :PTQAELETWWEELQK 1rypA 236 :LSAENIEERLVAIAE Number of specific fragments extracted= 4 number of extra gaps= 0 total=284 Number of alignments=67 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0351//projects/compbio/experiments/protein-predict/casp7/T0351/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0351//projects/compbio/experiments/protein-predict/casp7/T0351/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0351/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0351/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0351)L53.CB, (T0351)Q64.CB) [> 3.9899 = 6.6499 < 8.6448] w=0.9817 to align # Constraint # added constraint: constraint((T0351)W50.CB, (T0351)Y59.CB) [> 4.1343 = 6.8905 < 8.9577] w=0.9065 to align # Constraint # added constraint: constraint((T0351)W50.CB, (T0351)E60.CB) [> 4.2584 = 7.0974 < 9.2266] w=0.8374 to align # Constraint # added constraint: constraint((T0351)L22.CB, (T0351)I31.CB) [> 2.7557 = 4.5928 < 5.9706] w=0.8063 to align # Constraint # added constraint: constraint((T0351)W50.CB, (T0351)L82.CB) [> 4.0691 = 6.7818 < 8.8163] w=0.6686 to align # Constraint # added constraint: constraint((T0351)E21.CB, (T0351)Y30.CB) [> 4.0437 = 6.7395 < 8.7613] w=0.6469 to align # Constraint # added constraint: constraint((T0351)L85.CB, (T0351)I96.CB) [> 3.5974 = 5.9957 < 7.7944] w=0.5108 to align # Constraint # added constraint: constraint((T0351)L22.CB, (T0351)E32.CB) [> 3.3465 = 5.5776 < 7.2508] w=0.5023 to align # Constraint # added constraint: constraint((T0351)V65.CB, (T0351)L82.CB) [> 3.3007 = 5.5012 < 7.1516] w=0.4746 to align # Constraint # added constraint: constraint((T0351)E52.CB, (T0351)L67.CB) [> 4.3973 = 7.3288 < 9.5275] w=0.4730 to align # Constraint # added constraint: constraint((T0351)E21.CB, (T0351)I31.CB) [> 4.7109 = 7.8515 < 10.2070] w=0.4448 to align # Constraint # added constraint: constraint((T0351)V65.CB, (T0351)R79.CB) [> 3.7465 = 6.2442 < 8.1175] w=0.4210 to align # Constraint # added constraint: constraint((T0351)S16.CB, (T0351)W50.CB) [> 4.3781 = 7.2968 < 9.4859] w=0.4187 to align # Constraint # added constraint: constraint((T0351)R17.CB, (T0351)Q43.CB) [> 2.4714 = 4.1189 < 5.3546] w=0.4187 to align # Constraint # added constraint: constraint((T0351)R17.CB, (T0351)L46.CB) [> 2.9504 = 4.9173 < 6.3925] w=0.4187 to align # Constraint # added constraint: constraint((T0351)R17.CB, (T0351)E47.CB) [> 2.6284 = 4.3807 < 5.6950] w=0.4187 to align # Constraint # added constraint: constraint((T0351)R17.CB, (T0351)W50.CB) [> 3.6629 = 6.1049 < 7.9364] w=0.4187 to align # Constraint # added constraint: constraint((T0351)K18.CB, (T0351)Q43.CB) [> 3.6799 = 6.1332 < 7.9731] w=0.4187 to align # Constraint # added constraint: constraint((T0351)F20.CB, (T0351)L46.CB) [> 3.1498 = 5.2497 < 6.8246] w=0.4187 to align # Constraint # added constraint: constraint((T0351)L22.CB, (T0351)E45.CB) [> 4.6254 = 7.7090 < 10.0216] w=0.4187 to align # Constraint # added constraint: constraint((T0351)L22.CB, (T0351)L46.CB) [> 3.5075 = 5.8458 < 7.5995] w=0.4187 to align # Constraint # added constraint: constraint((T0351)L22.CB, (T0351)W49.CB) [> 4.5613 = 7.6022 < 9.8828] w=0.4187 to align # Constraint # added constraint: constraint((T0351)W50.CB, (T0351)L68.CB) [> 3.7220 = 6.2034 < 8.0644] w=0.4120 to align # Constraint # added constraint: constraint((T0351)L22.CB, (T0351)W34.CB) [> 3.8559 = 6.4265 < 8.3545] w=0.4091 to align # Constraint # added constraint: constraint((T0351)L46.CB, (T0351)L85.CB) [> 3.5993 = 5.9989 < 7.7986] w=0.3980 to align # Constraint # added constraint: constraint((T0351)L46.CB, (T0351)L82.CB) [> 4.2767 = 7.1279 < 9.2662] w=0.3904 to align # Constraint # added constraint: constraint((T0351)D19.CB, (T0351)K33.CB) [> 3.6380 = 6.0633 < 7.8822] w=0.3678 to align # Constraint # added constraint: constraint((T0351)F20.CB, (T0351)W50.CB) [> 4.2699 = 7.1165 < 9.2515] w=0.3532 to align # Constraint # added constraint: constraint((T0351)E21.CB, (T0351)K33.CB) [> 3.3795 = 5.6324 < 7.3222] w=0.3429 to align # Constraint # added constraint: constraint((T0351)F20.CB, (T0351)N35.CB) [> 4.5056 = 7.5093 < 9.7621] w=0.3429 to align # Constraint # added constraint: constraint((T0351)D19.CB, (T0351)L36.CB) [> 3.7784 = 6.2974 < 8.1866] w=0.3429 to align # Constraint # added constraint: constraint((T0351)Q54.CB, (T0351)V65.CB) [> 3.0549 = 5.0915 < 6.6189] w=0.3427 to align # Constraint # added constraint: constraint((T0351)L72.CB, (T0351)I96.CB) [> 3.9211 = 6.5352 < 8.4957] w=0.3327 to align # Constraint # added constraint: constraint((T0351)L67.CB, (T0351)A78.CB) [> 4.1103 = 6.8505 < 8.9057] w=0.3307 to align # Constraint # added constraint: constraint((T0351)L3.CB, (T0351)V65.CB) [> 3.2922 = 5.4871 < 7.1332] w=0.3123 to align # Constraint # added constraint: constraint((T0351)I7.CB, (T0351)K18.CB) [> 4.4951 = 7.4918 < 9.7394] w=0.3123 to align # Constraint # added constraint: constraint((T0351)K18.CB, (T0351)W50.CB) [> 4.5602 = 7.6003 < 9.8804] w=0.3123 to align # Constraint # added constraint: constraint((T0351)K18.CB, (T0351)E60.CB) [> 3.7160 = 6.1933 < 8.0513] w=0.3123 to align # Constraint # added constraint: constraint((T0351)D19.CB, (T0351)E60.CB) [> 3.3839 = 5.6398 < 7.3317] w=0.3123 to align # Constraint # added constraint: constraint((T0351)F20.CB, (T0351)I31.CB) [> 3.6332 = 6.0553 < 7.8719] w=0.3073 to align # Constraint # added constraint: constraint((T0351)I7.CB, (T0351)L22.CB) [> 4.5554 = 7.5924 < 9.8701] w=0.3065 to align # Constraint # added constraint: constraint((T0351)I7.CB, (T0351)F20.CB) [> 4.0353 = 6.7255 < 8.7431] w=0.3065 to align # Constraint # added constraint: constraint((T0351)L68.CB, (T0351)A78.CB) [> 3.1867 = 5.3112 < 6.9046] w=0.2842 to align # Constraint # added constraint: constraint((T0351)W34.CB, (T0351)L46.CB) [> 4.3043 = 7.1739 < 9.3260] w=0.2837 to align # Constraint # added constraint: constraint((T0351)A6.CB, (T0351)L22.CB) [> 4.5732 = 7.6220 < 9.9086] w=0.2791 to align # Constraint # added constraint: constraint((T0351)I7.CB, (T0351)W49.CB) [> 3.6487 = 6.0812 < 7.9055] w=0.2791 to align # Constraint # added constraint: constraint((T0351)I7.CB, (T0351)W50.CB) [> 4.2342 = 7.0569 < 9.1740] w=0.2791 to align # Constraint # added constraint: constraint((T0351)I7.CB, (T0351)L53.CB) [> 3.6251 = 6.0419 < 7.8545] w=0.2791 to align # Constraint # added constraint: constraint((T0351)M8.CB, (T0351)L53.CB) [> 3.3829 = 5.6382 < 7.3296] w=0.2791 to align # Constraint # added constraint: constraint((T0351)Y30.CB, (T0351)T42.CB) [> 4.5161 = 7.5269 < 9.7850] w=0.2791 to align # Constraint # added constraint: constraint((T0351)I31.CB, (T0351)T42.CB) [> 3.3468 = 5.5780 < 7.2514] w=0.2791 to align # Constraint # added constraint: constraint((T0351)Q54.CB, (T0351)L93.CB) [> 4.5898 = 7.6497 < 9.9446] w=0.2787 to align # Constraint # added constraint: constraint((T0351)P39.CB, (T0351)W49.CB) [> 3.2999 = 5.4999 < 7.1499] w=0.2773 to align # Constraint # added constraint: constraint((T0351)L82.CB, (T0351)L93.CB) [> 4.0968 = 6.8280 < 8.8764] w=0.2767 to align # Constraint # added constraint: constraint((T0351)V65.CB, (T0351)L93.CB) [> 4.0852 = 6.8087 < 8.8513] w=0.2724 to align # Constraint # added constraint: constraint((T0351)L68.CB, (T0351)I96.CB) [> 2.9371 = 4.8951 < 6.3637] w=0.2706 to align # Constraint # added constraint: constraint((T0351)V65.CB, (T0351)I96.CB) [> 3.8473 = 6.4122 < 8.3359] w=0.2706 to align # Constraint # added constraint: constraint((T0351)P62.CB, (T0351)A78.CB) [> 3.9158 = 6.5264 < 8.4843] w=0.2681 to align # Constraint # added constraint: constraint((T0351)Y30.CB, (T0351)Q64.CB) [> 4.1246 = 6.8743 < 8.9366] w=0.2621 to align # Constraint # added constraint: constraint((T0351)Y30.CB, (T0351)E60.CB) [> 3.5723 = 5.9538 < 7.7400] w=0.2621 to align # Constraint # added constraint: constraint((T0351)S29.CB, (T0351)E60.CB) [> 2.2849 = 3.8081 < 4.9505] w=0.2621 to align # Constraint # added constraint: constraint((T0351)L85.CB, (T0351)S99.CB) [> 3.1891 = 5.3151 < 6.9097] w=0.2561 to align # Constraint # added constraint: constraint((T0351)S94.CB, (T0351)G105.CA) [> 3.9761 = 6.6268 < 8.6149] w=0.2561 to align # Constraint # added constraint: constraint((T0351)S94.CB, (T0351)Y107.CB) [> 4.2383 = 7.0638 < 9.1830] w=0.2561 to align # Constraint # added constraint: constraint((T0351)S94.CB, (T0351)L110.CB) [> 2.7996 = 4.6661 < 6.0659] w=0.2561 to align # Constraint # added constraint: constraint((T0351)K97.CB, (T0351)Y107.CB) [> 3.4925 = 5.8209 < 7.5672] w=0.2561 to align # Constraint # added constraint: constraint((T0351)D19.CB, (T0351)W50.CB) [> 4.6870 = 7.8117 < 10.1553] w=0.2487 to align # Constraint # added constraint: constraint((T0351)W49.CB, (T0351)L68.CB) [> 3.9499 = 6.5832 < 8.5582] w=0.2271 to align # Constraint # added constraint: constraint((T0351)Y59.CB, (T0351)L68.CB) [> 3.3226 = 5.5376 < 7.1989] w=0.2127 to align # Constraint # added constraint: constraint((T0351)Y4.CB, (T0351)L53.CB) [> 3.6369 = 6.0615 < 7.8800] w=0.2103 to align # Constraint # added constraint: constraint((T0351)V65.CB, (T0351)N86.CB) [> 2.7036 = 4.5060 < 5.8578] w=0.2095 to align # Constraint # added constraint: constraint((T0351)Q64.CB, (T0351)N86.CB) [> 4.5149 = 7.5249 < 9.7823] w=0.2095 to align # Constraint # added constraint: constraint((T0351)L40.CB, (T0351)W49.CB) [> 4.4468 = 7.4113 < 9.6348] w=0.2075 to align # Constraint # added constraint: constraint((T0351)Y59.CB, (T0351)K97.CB) [> 4.5672 = 7.6120 < 9.8956] w=0.2061 to align # Constraint # added constraint: constraint((T0351)E60.CB, (T0351)I96.CB) [> 4.3179 = 7.1964 < 9.3554] w=0.2061 to align # Constraint # added constraint: constraint((T0351)E60.CB, (T0351)K97.CB) [> 2.8606 = 4.7676 < 6.1979] w=0.2061 to align # Constraint # added constraint: constraint((T0351)E60.CB, (T0351)L100.CB) [> 2.0512 = 3.4187 < 4.4443] w=0.2061 to align # Constraint # added constraint: constraint((T0351)E60.CB, (T0351)L101.CB) [> 3.0512 = 5.0853 < 6.6109] w=0.2061 to align # Constraint # added constraint: constraint((T0351)E60.CB, (T0351)K104.CB) [> 4.1019 = 6.8366 < 8.8875] w=0.2061 to align # Constraint # added constraint: constraint((T0351)P61.CB, (T0351)L101.CB) [> 4.5115 = 7.5192 < 9.7750] w=0.2061 to align # Constraint # added constraint: constraint((T0351)P62.CB, (T0351)L101.CB) [> 3.7421 = 6.2368 < 8.1079] w=0.2061 to align # Constraint # added constraint: constraint((T0351)P62.CB, (T0351)K104.CB) [> 3.2216 = 5.3693 < 6.9801] w=0.2061 to align # Constraint # added constraint: constraint((T0351)Q64.CB, (T0351)L93.CB) [> 3.9625 = 6.6042 < 8.5854] w=0.2061 to align # Constraint # added constraint: constraint((T0351)L68.CB, (T0351)K97.CB) [> 3.5495 = 5.9159 < 7.6906] w=0.2061 to align # Constraint # added constraint: constraint((T0351)N56.CB, (T0351)V65.CB) [> 4.5338 = 7.5564 < 9.8233] w=0.2042 to align # Constraint # added constraint: constraint((T0351)L72.CB, (T0351)L100.CB) [> 2.5479 = 4.2464 < 5.5204] w=0.2038 to align # Constraint # added constraint: constraint((T0351)A14.CB, (T0351)A38.CB) [> 3.9513 = 6.5855 < 8.5612] w=0.2020 to align # Constraint # added constraint: constraint((T0351)K18.CB, (T0351)L36.CB) [> 3.0202 = 5.0337 < 6.5438] w=0.2020 to align # Constraint # added constraint: constraint((T0351)D19.CB, (T0351)W34.CB) [> 4.0089 = 6.6815 < 8.6859] w=0.2020 to align # Constraint # added constraint: constraint((T0351)F20.CB, (T0351)W34.CB) [> 3.6776 = 6.1293 < 7.9681] w=0.2020 to align # Constraint # added constraint: constraint((T0351)E21.CB, (T0351)E32.CB) [> 4.4816 = 7.4694 < 9.7102] w=0.2020 to align # Constraint # added constraint: constraint((T0351)P41.CB, (T0351)W50.CB) [> 4.5402 = 7.5670 < 9.8372] w=0.1958 to align # Constraint # added constraint: constraint((T0351)T42.CB, (T0351)Q81.CB) [> 4.6759 = 7.7931 < 10.1311] w=0.1958 to align # Constraint # added constraint: constraint((T0351)G28.CA, (T0351)P61.CB) [> 3.9738 = 6.6230 < 8.6099] w=0.1940 to align # Constraint # added constraint: constraint((T0351)L98.CB, (T0351)L110.CB) [> 4.3629 = 7.2715 < 9.4529] w=0.1924 to align # Constraint # added constraint: constraint((T0351)L3.CB, (T0351)Q64.CB) [> 4.3500 = 7.2500 < 9.4250] w=0.1864 to align # Constraint # added constraint: constraint((T0351)L3.CB, (T0351)L68.CB) [> 3.2200 = 5.3667 < 6.9767] w=0.1864 to align # Constraint # added constraint: constraint((T0351)A6.CB, (T0351)Q64.CB) [> 4.6696 = 7.7827 < 10.1175] w=0.1864 to align # Constraint # added constraint: constraint((T0351)A6.CB, (T0351)L68.CB) [> 4.0830 = 6.8050 < 8.8466] w=0.1864 to align # Constraint # added constraint: constraint((T0351)I7.CB, (T0351)V65.CB) [> 4.6431 = 7.7385 < 10.0601] w=0.1864 to align # Constraint # added constraint: constraint((T0351)K10.CB, (T0351)Q64.CB) [> 4.6507 = 7.7512 < 10.0765] w=0.1864 to align # Constraint # added constraint: constraint((T0351)K18.CB, (T0351)Q64.CB) [> 4.1821 = 6.9701 < 9.0611] w=0.1864 to align # Constraint # added constraint: constraint((T0351)D19.CB, (T0351)E32.CB) [> 3.3628 = 5.6048 < 7.2862] w=0.1657 to align # Constraint # added constraint: constraint((T0351)D19.CB, (T0351)I31.CB) [> 4.1265 = 6.8775 < 8.9407] w=0.1657 to align # Constraint # added constraint: constraint((T0351)W34.CB, (T0351)W50.CB) [> 4.7720 = 7.9534 < 10.3394] w=0.1594 to align # Constraint # added constraint: constraint((T0351)W50.CB, (T0351)L67.CB) [> 3.7876 = 6.3127 < 8.2064] w=0.1594 to align # Constraint # added constraint: constraint((T0351)A14.CB, (T0351)I31.CB) [> 4.2477 = 7.0795 < 9.2034] w=0.1449 to align # Constraint # added constraint: constraint((T0351)L40.CB, (T0351)E60.CB) [> 4.6918 = 7.8197 < 10.1656] w=0.1449 to align # Constraint # added constraint: constraint((T0351)L46.CB, (T0351)L68.CB) [> 4.2298 = 7.0497 < 9.1646] w=0.1449 to align # Constraint # added constraint: constraint((T0351)E21.CB, (T0351)N35.CB) [> 2.7376 = 4.5627 < 5.9315] w=0.1409 to align # Constraint # added constraint: constraint((T0351)E21.CB, (T0351)W34.CB) [> 4.5884 = 7.6474 < 9.9416] w=0.1409 to align # Constraint # added constraint: constraint((T0351)W34.CB, (T0351)Q81.CB) [> 3.7182 = 6.1970 < 8.0561] w=0.1409 to align # Constraint # added constraint: constraint((T0351)L3.CB, (T0351)V15.CB) [> 4.4966 = 7.4944 < 9.7427] w=0.1396 to align # Constraint # added constraint: constraint((T0351)Y4.CB, (T0351)N13.CB) [> 3.7341 = 6.2235 < 8.0905] w=0.1396 to align # Constraint # added constraint: constraint((T0351)Y4.CB, (T0351)A14.CB) [> 3.7970 = 6.3283 < 8.2268] w=0.1396 to align # Constraint # added constraint: constraint((T0351)Y4.CB, (T0351)V15.CB) [> 3.8353 = 6.3922 < 8.3098] w=0.1396 to align # Constraint # added constraint: constraint((T0351)E21.CB, (T0351)A38.CB) [> 4.3974 = 7.3290 < 9.5277] w=0.1396 to align # Constraint # added constraint: constraint((T0351)L22.CB, (T0351)P41.CB) [> 2.4953 = 4.1589 < 5.4065] w=0.1396 to align # Constraint # added constraint: constraint((T0351)R23.CB, (T0351)L36.CB) [> 3.9885 = 6.6475 < 8.6417] w=0.1396 to align # Constraint # added constraint: constraint((T0351)R23.CB, (T0351)A38.CB) [> 3.1622 = 5.2704 < 6.8515] w=0.1396 to align # Constraint # added constraint: constraint((T0351)R23.CB, (T0351)P41.CB) [> 4.4397 = 7.3996 < 9.6194] w=0.1396 to align # Constraint # added constraint: constraint((T0351)E60.CB, (T0351)S99.CB) [> 4.7003 = 7.8338 < 10.1840] w=0.1394 to align # Constraint # added constraint: constraint((T0351)V65.CB, (T0351)E92.CB) [> 4.3464 = 7.2440 < 9.4172] w=0.1394 to align # Constraint # added constraint: constraint((T0351)L72.CB, (T0351)L98.CB) [> 4.5756 = 7.6261 < 9.9139] w=0.1394 to align # Constraint # added constraint: constraint((T0351)L72.CB, (T0351)L101.CB) [> 2.8665 = 4.7775 < 6.2107] w=0.1394 to align # Constraint # added constraint: constraint((T0351)S73.CB, (T0351)L101.CB) [> 4.6760 = 7.7933 < 10.1313] w=0.1394 to align # Constraint # added constraint: constraint((T0351)L68.CB, (T0351)L100.CB) [> 4.6065 = 7.6775 < 9.9808] w=0.1331 to align # Constraint # added constraint: constraint((T0351)L68.CB, (T0351)L77.CB) [> 4.3658 = 7.2763 < 9.4592] w=0.1326 to align # Constraint # added constraint: constraint((T0351)Y9.CB, (T0351)A78.CB) [> 4.4881 = 7.4802 < 9.7242] w=0.1325 to align # Constraint # added constraint: constraint((T0351)M8.CB, (T0351)A78.CB) [> 3.3656 = 5.6093 < 7.2921] w=0.1325 to align # Constraint # added constraint: constraint((T0351)M8.CB, (T0351)L77.CB) [> 4.3022 = 7.1703 < 9.3214] w=0.1325 to align # Constraint # added constraint: constraint((T0351)W50.CB, (T0351)L100.CB) [> 3.5728 = 5.9546 < 7.7410] w=0.1305 to align # Constraint # added constraint: constraint((T0351)L89.CB, (T0351)S99.CB) [> 2.8663 = 4.7771 < 6.2102] w=0.1305 to align # Constraint # added constraint: constraint((T0351)L46.CB, (T0351)L98.CB) [> 3.8801 = 6.4668 < 8.4069] w=0.1289 to align # Constraint # added constraint: constraint((T0351)A6.CB, (T0351)V65.CB) [> 4.4284 = 7.3807 < 9.5949] w=0.1259 to align # Constraint # added constraint: constraint((T0351)L3.CB, (T0351)A69.CB) [> 4.4784 = 7.4641 < 9.7033] w=0.1242 to align # Constraint # added constraint: constraint((T0351)S16.CB, (T0351)L82.CB) [> 4.7631 = 7.9385 < 10.3200] w=0.0966 to align # Constraint # added constraint: constraint((T0351)V15.CB, (T0351)N24.CB) [> 2.8303 = 4.7171 < 6.1322] w=0.0966 to align # Constraint # added constraint: constraint((T0351)A14.CB, (T0351)Y30.CB) [> 4.7458 = 7.9097 < 10.2826] w=0.0966 to align # Constraint # added constraint: constraint((T0351)E60.CB, (T0351)L98.CB) [> 4.5330 = 7.5551 < 9.8216] w=0.0731 to align # Constraint # added constraint: constraint((T0351)N24.CB, (T0351)L89.CB) [> 4.1341 = 6.8902 < 8.9572] w=0.0704 to align # Constraint # added constraint: constraint((T0351)F20.CB, (T0351)Q81.CB) [> 4.2933 = 7.1555 < 9.3022] w=0.0704 to align # Constraint # added constraint: constraint((T0351)Y9.CB, (T0351)L89.CB) [> 4.4881 = 7.4802 < 9.7242] w=0.0663 to align # Constraint # added constraint: constraint((T0351)Y9.CB, (T0351)E75.CB) [> 4.4898 = 7.4830 < 9.7278] w=0.0663 to align # Constraint # added constraint: constraint((T0351)P39.CB, (T0351)L103.CB) [> 4.6453 = 7.7422 < 10.0648] w=0.0653 to align # Constraint # added constraint: constraint((T0351)A69.CB, (T0351)L103.CB) [> 3.5051 = 5.8418 < 7.5943] w=0.0644 to align # Constraint # added constraint: constraint((T0351)L68.CB, (T0351)L103.CB) [> 2.5626 = 4.2710 < 5.5523] w=0.0644 to align # Constraint # added constraint: constraint((T0351)L68.CB, (T0351)S102.CB) [> 3.0935 = 5.1558 < 6.7026] w=0.0644 to align # Constraint # added constraint: constraint((T0351)V65.CB, (T0351)S102.CB) [> 4.1250 = 6.8750 < 8.9375] w=0.0644 to align # Constraint # added constraint: constraint((T0351)W50.CB, (T0351)L98.CB) [> 3.4265 = 5.7108 < 7.4240] w=0.0644 to align # Constraint # added constraint: constraint((T0351)L72.CB, (T0351)L103.CB) [> 3.5386 = 5.8977 < 7.6670] w=0.0644 to align # Constraint # added constraint: constraint((T0351)W50.CB, (T0351)Q64.CB) [> 4.6756 = 7.7926 < 10.1304] w=0.0628 to align # Constraint # added constraint: constraint((T0351)D25.CB, (T0351)P39.CB) [> 2.9212 = 4.8687 < 6.3293] w=0.0623 to align # Constraint # added constraint: constraint((T0351)Y11.CB, (T0351)I31.CB) [> 2.6997 = 4.4995 < 5.8493] w=0.0274 to align # Constraint # added constraint: constraint((T0351)Y11.CB, (T0351)F20.CB) [> 3.5329 = 5.8882 < 7.6547] w=0.0274 to align # Constraint # added constraint: constraint((T0351)K10.CB, (T0351)F20.CB) [> 4.6245 = 7.7076 < 10.0199] w=0.0274 to align # Constraint # added constraint: constraint((T0351)L3.CB, (T0351)N24.CB) [> 4.6184 = 7.6974 < 10.0066] w=0.0274 to align # Constraint # added constraint: constraint((T0351)Q64.CB, (T0351)Y107.CB) [> 3.2021 = 5.3369 < 6.9379] w=0.0137 to align # Constraint # added constraint: constraint((T0351)Q64.CB, (T0351)D106.CB) [> 4.6306 = 7.7176 < 10.0329] w=0.0137 to align # Constraint # added constraint: constraint((T0351)Q64.CB, (T0351)L103.CB) [> 3.1786 = 5.2976 < 6.8868] w=0.0137 to align # Constraint # added constraint: constraint((T0351)Q64.CB, (T0351)L98.CB) [> 3.8265 = 6.3775 < 8.2907] w=0.0137 to align # Constraint # added constraint: constraint((T0351)V65.CB, (T0351)L98.CB) [> 3.6992 = 6.1653 < 8.0149] w=0.0137 to align # Constraint # added constraint: constraint((T0351)P39.CB, (T0351)L110.CB) [> 4.3678 = 7.2796 < 9.4635] w=0.0073 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0351/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0351/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 19 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 226, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 228, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 230, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 232, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 Skipped atom 226, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 228, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 230, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 232, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 33 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain '' from PDB file servers/MIG_FROST_AL1.pdb.gz failed---no such chain. # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 44 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # Found a chain break before 19 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 35 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 Skipped atom 31, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 180, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 253, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 314, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 41 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 25 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 15 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 16 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0351)A78.O and (T0351)R79.N only 0.000 apart, marking (T0351)R79.N as missing # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0351)A108.O and (T0351)E109.N only 0.000 apart, marking (T0351)E109.N as missing # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0351)E45.N and (T0351)L46.N only 0.000 apart, marking (T0351)L46.N as missing WARNING: atoms too close: (T0351)E45.CA and (T0351)L46.CA only 0.000 apart, marking (T0351)L46.CA as missing WARNING: atoms too close: (T0351)E45.CB and (T0351)L46.CB only 0.000 apart, marking (T0351)L46.CB as missing WARNING: atoms too close: (T0351)E45.CG and (T0351)L46.CG only 0.000 apart, marking (T0351)L46.CG as missing WARNING: atoms too close: (T0351)E45.O and (T0351)L46.O only 0.000 apart, marking (T0351)L46.O as missing WARNING: atoms too close: (T0351)E45.C and (T0351)L46.C only 0.000 apart, marking (T0351)L46.C as missing WARNING: atoms too close: (T0351)L46.N and (T0351)E47.N only 0.000 apart, marking (T0351)L46.N as missing WARNING: atoms too close: (T0351)E45.N and (T0351)E47.N only 0.000 apart, marking (T0351)E47.N as missing WARNING: atoms too close: (T0351)L46.CA and (T0351)E47.CA only 0.000 apart, marking (T0351)E47.CA as missing WARNING: atoms too close: (T0351)E45.CA and (T0351)E47.CA only 0.000 apart, marking (T0351)E47.CA as missing WARNING: atoms too close: (T0351)L46.CB and (T0351)E47.CB only 0.000 apart, marking (T0351)E47.CB as missing WARNING: atoms too close: (T0351)E45.CB and (T0351)E47.CB only 0.000 apart, marking (T0351)E47.CB as missing WARNING: atoms too close: (T0351)L46.CG and (T0351)E47.CG only 0.000 apart, marking (T0351)E47.CG as missing WARNING: atoms too close: (T0351)E45.CG and (T0351)E47.CG only 0.000 apart, marking (T0351)E47.CG as missing WARNING: atoms too close: (T0351)L46.O and (T0351)E47.O only 0.000 apart, marking (T0351)E47.O as missing WARNING: atoms too close: (T0351)E45.O and (T0351)E47.O only 0.000 apart, marking (T0351)E47.O as missing WARNING: atoms too close: (T0351)L46.C and (T0351)E47.C only 0.000 apart, marking (T0351)E47.C as missing WARNING: atoms too close: (T0351)E45.C and (T0351)E47.C only 0.000 apart, marking (T0351)E47.C as missing WARNING: atoms too close: (T0351)E47.N and (T0351)T48.N only 0.000 apart, marking (T0351)E47.N as missing WARNING: atoms too close: (T0351)L46.N and (T0351)T48.N only 0.000 apart, marking (T0351)L46.N as missing WARNING: atoms too close: (T0351)E45.N and (T0351)T48.N only 0.000 apart, marking (T0351)T48.N as missing WARNING: atoms too close: (T0351)E47.CA and (T0351)T48.CA only 0.000 apart, marking (T0351)T48.CA as missing WARNING: atoms too close: (T0351)L46.CA and (T0351)T48.CA only 0.000 apart, marking (T0351)T48.CA as missing WARNING: atoms too close: (T0351)E45.CA and (T0351)T48.CA only 0.000 apart, marking (T0351)T48.CA as missing WARNING: atoms too close: (T0351)E47.CB and (T0351)T48.CB only 0.000 apart, marking (T0351)T48.CB as missing WARNING: atoms too close: (T0351)L46.CB and (T0351)T48.CB only 0.000 apart, marking (T0351)T48.CB as missing WARNING: atoms too close: (T0351)E45.CB and (T0351)T48.CB only 0.000 apart, marking (T0351)T48.CB as missing WARNING: atoms too close: (T0351)E47.CG and (T0351)T48.CG2 only 0.000 apart, marking (T0351)T48.CG2 as missing WARNING: atoms too close: (T0351)L46.CG and (T0351)T48.CG2 only 0.000 apart, marking (T0351)T48.CG2 as missing WARNING: atoms too close: (T0351)E45.CG and (T0351)T48.CG2 only 0.000 apart, marking (T0351)T48.CG2 as missing WARNING: atoms too close: (T0351)E47.O and (T0351)T48.O only 0.000 apart, marking (T0351)T48.O as missing WARNING: atoms too close: (T0351)L46.O and (T0351)T48.O only 0.000 apart, marking (T0351)T48.O as missing WARNING: atoms too close: (T0351)E45.O and (T0351)T48.O only 0.000 apart, marking (T0351)T48.O as missing WARNING: atoms too close: (T0351)E47.C and (T0351)T48.C only 0.000 apart, marking (T0351)T48.C as missing WARNING: atoms too close: (T0351)L46.C and (T0351)T48.C only 0.000 apart, marking (T0351)T48.C as missing WARNING: atoms too close: (T0351)E45.C and (T0351)T48.C only 0.000 apart, marking (T0351)T48.C as missing WARNING: atoms too close: (T0351)T48.N and (T0351)W49.N only 0.000 apart, marking (T0351)T48.N as missing WARNING: atoms too close: (T0351)E47.N and (T0351)W49.N only 0.000 apart, marking (T0351)E47.N as missing WARNING: atoms too close: (T0351)L46.N and (T0351)W49.N only 0.000 apart, marking (T0351)L46.N as missing WARNING: atoms too close: (T0351)E45.N and (T0351)W49.N only 0.000 apart, marking (T0351)W49.N as missing WARNING: atoms too close: (T0351)T48.CA and (T0351)W49.CA only 0.000 apart, marking (T0351)W49.CA as missing WARNING: atoms too close: (T0351)E47.CA and (T0351)W49.CA only 0.000 apart, marking (T0351)W49.CA as missing WARNING: atoms too close: (T0351)L46.CA and (T0351)W49.CA only 0.000 apart, marking (T0351)W49.CA as missing WARNING: atoms too close: (T0351)E45.CA and (T0351)W49.CA only 0.000 apart, marking (T0351)W49.CA as missing WARNING: atoms too close: (T0351)T48.CB and (T0351)W49.CB only 0.000 apart, marking (T0351)W49.CB as missing WARNING: atoms too close: (T0351)E47.CB and (T0351)W49.CB only 0.000 apart, marking (T0351)W49.CB as missing WARNING: atoms too close: (T0351)L46.CB and (T0351)W49.CB only 0.000 apart, marking (T0351)W49.CB as missing WARNING: atoms too close: (T0351)E45.CB and (T0351)W49.CB only 0.000 apart, marking (T0351)W49.CB as missing WARNING: atoms too close: (T0351)T48.CG2 and (T0351)W49.CG only 0.000 apart, marking (T0351)W49.CG as missing WARNING: atoms too close: (T0351)E47.CG and (T0351)W49.CG only 0.000 apart, marking (T0351)W49.CG as missing WARNING: atoms too close: (T0351)L46.CG and (T0351)W49.CG only 0.000 apart, marking (T0351)W49.CG as missing WARNING: atoms too close: (T0351)E45.CG and (T0351)W49.CG only 0.000 apart, marking (T0351)W49.CG as missing WARNING: atoms too close: (T0351)T48.O and (T0351)W49.O only 0.000 apart, marking (T0351)W49.O as missing WARNING: atoms too close: (T0351)E47.O and (T0351)W49.O only 0.000 apart, marking (T0351)W49.O as missing WARNING: atoms too close: (T0351)L46.O and (T0351)W49.O only 0.000 apart, marking (T0351)W49.O as missing WARNING: atoms too close: (T0351)E45.O and (T0351)W49.O only 0.000 apart, marking (T0351)W49.O as missing WARNING: atoms too close: (T0351)T48.C and (T0351)W49.C only 0.000 apart, marking (T0351)W49.C as missing WARNING: atoms too close: (T0351)E47.C and (T0351)W49.C only 0.000 apart, marking (T0351)W49.C as missing WARNING: atoms too close: (T0351)L46.C and (T0351)W49.C only 0.000 apart, marking (T0351)W49.C as missing WARNING: atoms too close: (T0351)E45.C and (T0351)W49.C only 0.000 apart, marking (T0351)W49.C as missing WARNING: atoms too close: (T0351)W49.N and (T0351)Q70.N only 0.000 apart, marking (T0351)W49.N as missing WARNING: atoms too close: (T0351)T48.N and (T0351)Q70.N only 0.000 apart, marking (T0351)T48.N as missing WARNING: atoms too close: (T0351)E47.N and (T0351)Q70.N only 0.000 apart, marking (T0351)E47.N as missing WARNING: atoms too close: (T0351)L46.N and (T0351)Q70.N only 0.000 apart, marking (T0351)L46.N as missing WARNING: atoms too close: (T0351)E45.N and (T0351)Q70.N only 0.000 apart, marking (T0351)Q70.N as missing WARNING: atoms too close: (T0351)W49.CA and (T0351)Q70.CA only 0.000 apart, marking (T0351)Q70.CA as missing WARNING: atoms too close: (T0351)T48.CA and (T0351)Q70.CA only 0.000 apart, marking (T0351)Q70.CA as missing WARNING: atoms too close: (T0351)E47.CA and (T0351)Q70.CA only 0.000 apart, marking (T0351)Q70.CA as missing WARNING: atoms too close: (T0351)L46.CA and (T0351)Q70.CA only 0.000 apart, marking (T0351)Q70.CA as missing WARNING: atoms too close: (T0351)E45.CA and (T0351)Q70.CA only 0.000 apart, marking (T0351)Q70.CA as missing WARNING: atoms too close: (T0351)W49.CB and (T0351)Q70.CB only 0.000 apart, marking (T0351)Q70.CB as missing WARNING: atoms too close: (T0351)T48.CB and (T0351)Q70.CB only 0.000 apart, marking (T0351)Q70.CB as missing WARNING: atoms too close: (T0351)E47.CB and (T0351)Q70.CB only 0.000 apart, marking (T0351)Q70.CB as missing WARNING: atoms too close: (T0351)L46.CB and (T0351)Q70.CB only 0.000 apart, marking (T0351)Q70.CB as missing WARNING: atoms too close: (T0351)E45.CB and (T0351)Q70.CB only 0.000 apart, marking (T0351)Q70.CB as missing WARNING: atoms too close: (T0351)W49.CG and (T0351)Q70.CG only 0.000 apart, marking (T0351)Q70.CG as missing WARNING: atoms too close: (T0351)T48.CG2 and (T0351)Q70.CG only 0.000 apart, marking (T0351)Q70.CG as missing WARNING: atoms too close: (T0351)E47.CG and (T0351)Q70.CG only 0.000 apart, marking (T0351)Q70.CG as missing WARNING: atoms too close: (T0351)L46.CG and (T0351)Q70.CG only 0.000 apart, marking (T0351)Q70.CG as missing WARNING: atoms too close: (T0351)E45.CG and (T0351)Q70.CG only 0.000 apart, marking (T0351)Q70.CG as missing WARNING: atoms too close: (T0351)W49.O and (T0351)Q70.O only 0.000 apart, marking (T0351)Q70.O as missing WARNING: atoms too close: (T0351)T48.O and (T0351)Q70.O only 0.000 apart, marking (T0351)Q70.O as missing WARNING: atoms too close: (T0351)E47.O and (T0351)Q70.O only 0.000 apart, marking (T0351)Q70.O as missing WARNING: atoms too close: (T0351)L46.O and (T0351)Q70.O only 0.000 apart, marking (T0351)Q70.O as missing WARNING: atoms too close: (T0351)E45.O and (T0351)Q70.O only 0.000 apart, marking (T0351)Q70.O as missing WARNING: atoms too close: (T0351)W49.C and (T0351)Q70.C only 0.000 apart, marking (T0351)Q70.C as missing WARNING: atoms too close: (T0351)T48.C and (T0351)Q70.C only 0.000 apart, marking (T0351)Q70.C as missing WARNING: atoms too close: (T0351)E47.C and (T0351)Q70.C only 0.000 apart, marking (T0351)Q70.C as missing WARNING: atoms too close: (T0351)L46.C and (T0351)Q70.C only 0.000 apart, marking (T0351)Q70.C as missing WARNING: atoms too close: (T0351)E45.C and (T0351)Q70.C only 0.000 apart, marking (T0351)Q70.C as missing WARNING: atoms too close: (T0351)Q70.N and (T0351)E71.N only 0.000 apart, marking (T0351)Q70.N as missing WARNING: atoms too close: (T0351)W49.N and (T0351)E71.N only 0.000 apart, marking (T0351)W49.N as missing WARNING: atoms too close: (T0351)T48.N and (T0351)E71.N only 0.000 apart, marking (T0351)T48.N as missing WARNING: atoms too close: (T0351)E47.N and (T0351)E71.N only 0.000 apart, marking (T0351)E47.N as missing WARNING: atoms too close: (T0351)L46.N and (T0351)E71.N only 0.000 apart, marking (T0351)L46.N as missing WARNING: atoms too close: (T0351)E45.N and (T0351)E71.N only 0.000 apart, marking (T0351)E71.N as missing WARNING: atoms too close: (T0351)Q70.CA and (T0351)E71.CA only 0.000 apart, marking (T0351)E71.CA as missing WARNING: atoms too close: (T0351)W49.CA and (T0351)E71.CA only 0.000 apart, marking (T0351)E71.CA as missing WARNING: atoms too close: (T0351)T48.CA and (T0351)E71.CA only 0.000 apart, marking (T0351)E71.CA as missing WARNING: atoms too close: (T0351)E47.CA and (T0351)E71.CA only 0.000 apart, marking (T0351)E71.CA as missing WARNING: atoms too close: (T0351)L46.CA and (T0351)E71.CA only 0.000 apart, marking (T0351)E71.CA as missing WARNING: atoms too close: (T0351)E45.CA and (T0351)E71.CA only 0.000 apart, marking (T0351)E71.CA as missing WARNING: atoms too close: (T0351)Q70.CB and (T0351)E71.CB only 0.000 apart, marking (T0351)E71.CB as missing WARNING: atoms too close: (T0351)W49.CB and (T0351)E71.CB only 0.000 apart, marking (T0351)E71.CB as missing WARNING: atoms too close: (T0351)T48.CB and (T0351)E71.CB only 0.000 apart, marking (T0351)E71.CB as missing WARNING: atoms too close: (T0351)E47.CB and (T0351)E71.CB only 0.000 apart, marking (T0351)E71.CB as missing WARNING: atoms too close: (T0351)L46.CB and (T0351)E71.CB only 0.000 apart, marking (T0351)E71.CB as missing WARNING: atoms too close: (T0351)E45.CB and (T0351)E71.CB only 0.000 apart, marking (T0351)E71.CB as missing WARNING: atoms too close: (T0351)Q70.CG and (T0351)E71.CG only 0.000 apart, marking (T0351)E71.CG as missing WARNING: atoms too close: (T0351)W49.CG and (T0351)E71.CG only 0.000 apart, marking (T0351)E71.CG as missing WARNING: atoms too close: (T0351)T48.CG2 and (T0351)E71.CG only 0.000 apart, marking (T0351)E71.CG as missing WARNING: atoms too close: (T0351)E47.CG and (T0351)E71.CG only 0.000 apart, marking (T0351)E71.CG as missing WARNING: atoms too close: (T0351)L46.CG and (T0351)E71.CG only 0.000 apart, marking (T0351)E71.CG as missing WARNING: atoms too close: (T0351)E45.CG and (T0351)E71.CG only 0.000 apart, marking (T0351)E71.CG as missing WARNING: atoms too close: (T0351)Q70.O and (T0351)E71.O only 0.000 apart, marking (T0351)E71.O as missing WARNING: atoms too close: (T0351)W49.O and (T0351)E71.O only 0.000 apart, marking (T0351)E71.O as missing WARNING: atoms too close: (T0351)T48.O and (T0351)E71.O only 0.000 apart, marking (T0351)E71.O as missing WARNING: atoms too close: (T0351)E47.O and (T0351)E71.O only 0.000 apart, marking (T0351)E71.O as missing WARNING: atoms too close: (T0351)L46.O and (T0351)E71.O only 0.000 apart, marking (T0351)E71.O as missing WARNING: atoms too close: (T0351)E45.O and (T0351)E71.O only 0.000 apart, marking (T0351)E71.O as missing WARNING: atoms too close: (T0351)Q70.C and (T0351)E71.C only 0.000 apart, marking (T0351)E71.C as missing WARNING: atoms too close: (T0351)W49.C and (T0351)E71.C only 0.000 apart, marking (T0351)E71.C as missing WARNING: atoms too close: (T0351)T48.C and (T0351)E71.C only 0.000 apart, marking (T0351)E71.C as missing WARNING: atoms too close: (T0351)E47.C and (T0351)E71.C only 0.000 apart, marking (T0351)E71.C as missing WARNING: atoms too close: (T0351)L46.C and (T0351)E71.C only 0.000 apart, marking (T0351)E71.C as missing WARNING: atoms too close: (T0351)E45.C and (T0351)E71.C only 0.000 apart, marking (T0351)E71.C as missing # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/panther3_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation panther3_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0351 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 1.9872 model score 1.9057 model score 1.9779 model score 1.9605 model score 2.2689 model score 1.6855 model score 1.7177 model score 1.6201 model score 1.6912 model score 1.7727 model score 1.6523 model score 1.7759 model score 1.6388 model score 2.2110 model score 1.4954 model score 2.1317 model score 1.6070 model score 1.7301 model score 1.7508 model score 1.4954 model score 1.5105 model score 1.5355 model score 1.7258 model score 1.5520 model score 2.2288 model score 1.7718 model score 1.7599 model score 1.7718 model score 1.7729 model score 1.7726 model score 1.7685 model score 1.7922 model score 1.7649 model score 2.1147 model score 1.5858 model score 1.5858 model score 1.9349 model score 1.6482 model score 1.3772 model score 1.5329 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.7922 model score 1.7649 model score 1.4071 model score 1.4357 model score 1.6991 model score 1.6655 model score 1.7615 model score 1.8454 model score 1.9270 model score 1.9371 model score 1.9018 model score 1.7413 model score 1.6694 model score 1.7528 model score 1.6955 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.3236 model score 1.7953 model score 1.8775 model score 1.9227 model score 2.1276 model score 1.8342 model score 1.8513 model score 1.8271 model score 1.9307 model score 1.9067 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.4223 model score 1.3486 model score 2.3745 model score 1.4207 model score 1.5085 model score 1.9305 model score 1.9595 model score 2.1547 model score 1.8269 model score 1.6935 model score 1.4224 model score 1.6182 model score 1.5906 model score 2.7092 model score 2.2422 model score 2.8415 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.4874 model score 1.5645 model score 1.4390 model score 1.1005 model score 1.6322 model score 1.3258 model score 1.4536 model score 1.5502 model score 1.6569 model score 1.5647 model score 1.5502 model score 1.3258 model score 1.4536 model score 1.6569 model score 1.5399 model score 1.6511 model score 1.5858 model score 1.3745 model score 1.6721 model score 1.4543 model score 1.2771 model score 1.7304 model score 1.6228 model score 1.7815 model score 1.5686 model score 1.6832 model score 1.7967 model score 1.7934 model score 1.7962 model score 1.7958 model score 1.7958 model score 1.6537 model score 1.6381 model score 1.6279 model score 1.6554 model score 1.7967 model score 1.7170 model score 1.4037 model score 1.7115 model score 1.4921 model score 1.4844 model score 1.1947 model score 1.6728 model score 1.7564 model score 1.7076 model score 1.6011 model score 1.8145 model score 1.5502 model score 1.6484 model score 1.7170 model score 1.8489 model score 1.6645 model score 2.1008 model score 2.6133 model score 2.0907 model score 1.9380 model score 1.9082 model score 1.9004 model score 2.0057 model score 1.5467 model score 1.4835 model score 2.4229 model score 1.9004 model score 2.0057 model score 1.5104 model score 1.5149 model score 2.4336 model score 1.6484 model score 1.8404 model score 1.7115 model score 1.8644 model score 1.6645 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.8403 model score 1.5397 model score 1.3671 model score 1.1277 model score 1.3871 model score 1.8162 model score 2.6133 model score 1.4399 model score 2.0907 model score 1.5887 model score 1.7975 model score 2.0697 model score 2.6133 model score 1.5741 model score 1.6621 model score 2.1961 model score 1.9961 model score 1.7753 model score 2.0479 model score 2.2720 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.3930 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.1141 model score 1.1071 model score 1.1036 model score 1.1933 model score 1.1286 model score 1.7387 model score 1.5229 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.8728 model score 1.4854 model score 2.0182 model score 1.6696 model score 1.9084 model score 1.7647 model score 2.1181 model score 2.0551 model score 2.2193 model score 1.9521 model score 1.3488 model score 1.5135 model score 1.3628 model score 1.5256 model score 1.4177 model score 1.7378 model score 1.7776 model score 1.9560 model score 1.7617 model score 1.9186 model score 1.2984 model score 2.0031 model score 1.7849 model score 2.0477 model score 1.9782 model score 1.5651 model score 1.3981 model score 1.3000 model score 1.5860 USE_META, weight: 0.5416 cost: 1.9872 min: 1.1005 max: 2.8415 USE_META, weight: 0.5837 cost: 1.9057 min: 1.1005 max: 2.8415 USE_META, weight: 0.5464 cost: 1.9779 min: 1.1005 max: 2.8415 USE_META, weight: 0.5554 cost: 1.9605 min: 1.1005 max: 2.8415 USE_META, weight: 0.3960 cost: 2.2689 min: 1.1005 max: 2.8415 USE_META, weight: 0.6976 cost: 1.6855 min: 1.1005 max: 2.8415 USE_META, weight: 0.6809 cost: 1.7177 min: 1.1005 max: 2.8415 USE_META, weight: 0.7314 cost: 1.6201 min: 1.1005 max: 2.8415 USE_META, weight: 0.6946 cost: 1.6912 min: 1.1005 max: 2.8415 USE_META, weight: 0.6525 cost: 1.7727 min: 1.1005 max: 2.8415 USE_META, weight: 0.7147 cost: 1.6523 min: 1.1005 max: 2.8415 USE_META, weight: 0.6508 cost: 1.7759 min: 1.1005 max: 2.8415 USE_META, weight: 0.7217 cost: 1.6388 min: 1.1005 max: 2.8415 USE_META, weight: 0.4259 cost: 2.2110 min: 1.1005 max: 2.8415 USE_META, weight: 0.7958 cost: 1.4954 min: 1.1005 max: 2.8415 USE_META, weight: 0.4669 cost: 2.1317 min: 1.1005 max: 2.8415 USE_META, weight: 0.7382 cost: 1.6070 min: 1.1005 max: 2.8415 USE_META, weight: 0.6745 cost: 1.7301 min: 1.1005 max: 2.8415 USE_META, weight: 0.6638 cost: 1.7508 min: 1.1005 max: 2.8415 USE_META, weight: 0.7958 cost: 1.4954 min: 1.1005 max: 2.8415 USE_META, weight: 0.7880 cost: 1.5105 min: 1.1005 max: 2.8415 USE_META, weight: 0.7751 cost: 1.5355 min: 1.1005 max: 2.8415 USE_META, weight: 0.6767 cost: 1.7258 min: 1.1005 max: 2.8415 USE_META, weight: 0.7666 cost: 1.5520 min: 1.1005 max: 2.8415 USE_META, weight: 0.4167 cost: 2.2288 min: 1.1005 max: 2.8415 USE_META, weight: 0.6529 cost: 1.7718 min: 1.1005 max: 2.8415 USE_META, weight: 0.6591 cost: 1.7599 min: 1.1005 max: 2.8415 USE_META, weight: 0.6529 cost: 1.7718 min: 1.1005 max: 2.8415 USE_META, weight: 0.6524 cost: 1.7729 min: 1.1005 max: 2.8415 USE_META, weight: 0.6526 cost: 1.7726 min: 1.1005 max: 2.8415 USE_META, weight: 0.6547 cost: 1.7685 min: 1.1005 max: 2.8415 USE_META, weight: 0.6424 cost: 1.7922 min: 1.1005 max: 2.8415 USE_META, weight: 0.6565 cost: 1.7649 min: 1.1005 max: 2.8415 USE_META, weight: 0.4757 cost: 2.1147 min: 1.1005 max: 2.8415 USE_META, weight: 0.7491 cost: 1.5858 min: 1.1005 max: 2.8415 USE_META, weight: 0.7491 cost: 1.5858 min: 1.1005 max: 2.8415 USE_META, weight: 0.5686 cost: 1.9349 min: 1.1005 max: 2.8415 USE_META, weight: 0.7168 cost: 1.6482 min: 1.1005 max: 2.8415 USE_META, weight: 0.8570 cost: 1.3772 min: 1.1005 max: 2.8415 USE_META, weight: 0.7764 cost: 1.5329 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.6424 cost: 1.7922 min: 1.1005 max: 2.8415 USE_META, weight: 0.6565 cost: 1.7649 min: 1.1005 max: 2.8415 USE_META, weight: 0.8415 cost: 1.4071 min: 1.1005 max: 2.8415 USE_META, weight: 0.8267 cost: 1.4357 min: 1.1005 max: 2.8415 USE_META, weight: 0.6906 cost: 1.6991 min: 1.1005 max: 2.8415 USE_META, weight: 0.7079 cost: 1.6655 min: 1.1005 max: 2.8415 USE_META, weight: 0.6583 cost: 1.7615 min: 1.1005 max: 2.8415 USE_META, weight: 0.6149 cost: 1.8454 min: 1.1005 max: 2.8415 USE_META, weight: 0.5727 cost: 1.9270 min: 1.1005 max: 2.8415 USE_META, weight: 0.5675 cost: 1.9371 min: 1.1005 max: 2.8415 USE_META, weight: 0.5858 cost: 1.9018 min: 1.1005 max: 2.8415 USE_META, weight: 0.6687 cost: 1.7413 min: 1.1005 max: 2.8415 USE_META, weight: 0.7059 cost: 1.6694 min: 1.1005 max: 2.8415 USE_META, weight: 0.6628 cost: 1.7528 min: 1.1005 max: 2.8415 USE_META, weight: 0.6924 cost: 1.6955 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.3677 cost: 2.3236 min: 1.1005 max: 2.8415 USE_META, weight: 0.6408 cost: 1.7953 min: 1.1005 max: 2.8415 USE_META, weight: 0.5983 cost: 1.8775 min: 1.1005 max: 2.8415 USE_META, weight: 0.5749 cost: 1.9227 min: 1.1005 max: 2.8415 USE_META, weight: 0.4691 cost: 2.1276 min: 1.1005 max: 2.8415 USE_META, weight: 0.6207 cost: 1.8342 min: 1.1005 max: 2.8415 USE_META, weight: 0.6119 cost: 1.8513 min: 1.1005 max: 2.8415 USE_META, weight: 0.6243 cost: 1.8271 min: 1.1005 max: 2.8415 USE_META, weight: 0.5708 cost: 1.9307 min: 1.1005 max: 2.8415 USE_META, weight: 0.5832 cost: 1.9067 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.3167 cost: 2.4223 min: 1.1005 max: 2.8415 USE_META, weight: 0.8717 cost: 1.3486 min: 1.1005 max: 2.8415 USE_META, weight: 0.3414 cost: 2.3745 min: 1.1005 max: 2.8415 USE_META, weight: 0.8345 cost: 1.4207 min: 1.1005 max: 2.8415 USE_META, weight: 0.7891 cost: 1.5085 min: 1.1005 max: 2.8415 USE_META, weight: 0.5709 cost: 1.9305 min: 1.1005 max: 2.8415 USE_META, weight: 0.5559 cost: 1.9595 min: 1.1005 max: 2.8415 USE_META, weight: 0.4550 cost: 2.1547 min: 1.1005 max: 2.8415 USE_META, weight: 0.6245 cost: 1.8269 min: 1.1005 max: 2.8415 USE_META, weight: 0.6934 cost: 1.6935 min: 1.1005 max: 2.8415 USE_META, weight: 0.8336 cost: 1.4224 min: 1.1005 max: 2.8415 USE_META, weight: 0.7323 cost: 1.6182 min: 1.1005 max: 2.8415 USE_META, weight: 0.7466 cost: 1.5906 min: 1.1005 max: 2.8415 USE_META, weight: 0.1684 cost: 2.7092 min: 1.1005 max: 2.8415 USE_META, weight: 0.4098 cost: 2.2422 min: 1.1005 max: 2.8415 USE_META, weight: 0.1000 cost: 2.8415 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.8000 cost: 1.4874 min: 1.1005 max: 2.8415 USE_META, weight: 0.7601 cost: 1.5645 min: 1.1005 max: 2.8415 USE_META, weight: 0.8250 cost: 1.4390 min: 1.1005 max: 2.8415 USE_META, weight: 1.0000 cost: 1.1005 min: 1.1005 max: 2.8415 USE_META, weight: 0.7251 cost: 1.6322 min: 1.1005 max: 2.8415 USE_META, weight: 0.8835 cost: 1.3258 min: 1.1005 max: 2.8415 USE_META, weight: 0.8174 cost: 1.4536 min: 1.1005 max: 2.8415 USE_META, weight: 0.7675 cost: 1.5502 min: 1.1005 max: 2.8415 USE_META, weight: 0.7124 cost: 1.6569 min: 1.1005 max: 2.8415 USE_META, weight: 0.7600 cost: 1.5647 min: 1.1005 max: 2.8415 USE_META, weight: 0.7675 cost: 1.5502 min: 1.1005 max: 2.8415 USE_META, weight: 0.8835 cost: 1.3258 min: 1.1005 max: 2.8415 USE_META, weight: 0.8174 cost: 1.4536 min: 1.1005 max: 2.8415 USE_META, weight: 0.7124 cost: 1.6569 min: 1.1005 max: 2.8415 USE_META, weight: 0.7728 cost: 1.5399 min: 1.1005 max: 2.8415 USE_META, weight: 0.7153 cost: 1.6511 min: 1.1005 max: 2.8415 USE_META, weight: 0.7491 cost: 1.5858 min: 1.1005 max: 2.8415 USE_META, weight: 0.8583 cost: 1.3745 min: 1.1005 max: 2.8415 USE_META, weight: 0.7045 cost: 1.6721 min: 1.1005 max: 2.8415 USE_META, weight: 0.8171 cost: 1.4543 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.6743 cost: 1.7304 min: 1.1005 max: 2.8415 USE_META, weight: 0.7300 cost: 1.6228 min: 1.1005 max: 2.8415 USE_META, weight: 0.6479 cost: 1.7815 min: 1.1005 max: 2.8415 USE_META, weight: 0.7580 cost: 1.5686 min: 1.1005 max: 2.8415 USE_META, weight: 0.6987 cost: 1.6832 min: 1.1005 max: 2.8415 USE_META, weight: 0.6401 cost: 1.7967 min: 1.1005 max: 2.8415 USE_META, weight: 0.6418 cost: 1.7934 min: 1.1005 max: 2.8415 USE_META, weight: 0.6404 cost: 1.7962 min: 1.1005 max: 2.8415 USE_META, weight: 0.6405 cost: 1.7958 min: 1.1005 max: 2.8415 USE_META, weight: 0.6405 cost: 1.7958 min: 1.1005 max: 2.8415 USE_META, weight: 0.7140 cost: 1.6537 min: 1.1005 max: 2.8415 USE_META, weight: 0.7221 cost: 1.6381 min: 1.1005 max: 2.8415 USE_META, weight: 0.7274 cost: 1.6279 min: 1.1005 max: 2.8415 USE_META, weight: 0.7131 cost: 1.6554 min: 1.1005 max: 2.8415 USE_META, weight: 0.6401 cost: 1.7967 min: 1.1005 max: 2.8415 USE_META, weight: 0.6813 cost: 1.7170 min: 1.1005 max: 2.8415 USE_META, weight: 0.8432 cost: 1.4037 min: 1.1005 max: 2.8415 USE_META, weight: 0.6841 cost: 1.7115 min: 1.1005 max: 2.8415 USE_META, weight: 0.7975 cost: 1.4921 min: 1.1005 max: 2.8415 USE_META, weight: 0.8015 cost: 1.4844 min: 1.1005 max: 2.8415 USE_META, weight: 0.9513 cost: 1.1947 min: 1.1005 max: 2.8415 USE_META, weight: 0.7041 cost: 1.6728 min: 1.1005 max: 2.8415 USE_META, weight: 0.6609 cost: 1.7564 min: 1.1005 max: 2.8415 USE_META, weight: 0.6862 cost: 1.7076 min: 1.1005 max: 2.8415 USE_META, weight: 0.7412 cost: 1.6011 min: 1.1005 max: 2.8415 USE_META, weight: 0.6309 cost: 1.8145 min: 1.1005 max: 2.8415 USE_META, weight: 0.7675 cost: 1.5502 min: 1.1005 max: 2.8415 USE_META, weight: 0.7168 cost: 1.6484 min: 1.1005 max: 2.8415 USE_META, weight: 0.6813 cost: 1.7170 min: 1.1005 max: 2.8415 USE_META, weight: 0.6131 cost: 1.8489 min: 1.1005 max: 2.8415 USE_META, weight: 0.7084 cost: 1.6645 min: 1.1005 max: 2.8415 USE_META, weight: 0.4829 cost: 2.1008 min: 1.1005 max: 2.8415 USE_META, weight: 0.2179 cost: 2.6133 min: 1.1005 max: 2.8415 USE_META, weight: 0.4881 cost: 2.0907 min: 1.1005 max: 2.8415 USE_META, weight: 0.5670 cost: 1.9380 min: 1.1005 max: 2.8415 USE_META, weight: 0.5824 cost: 1.9082 min: 1.1005 max: 2.8415 USE_META, weight: 0.5865 cost: 1.9004 min: 1.1005 max: 2.8415 USE_META, weight: 0.5320 cost: 2.0057 min: 1.1005 max: 2.8415 USE_META, weight: 0.7693 cost: 1.5467 min: 1.1005 max: 2.8415 USE_META, weight: 0.8020 cost: 1.4835 min: 1.1005 max: 2.8415 USE_META, weight: 0.3164 cost: 2.4229 min: 1.1005 max: 2.8415 USE_META, weight: 0.5865 cost: 1.9004 min: 1.1005 max: 2.8415 USE_META, weight: 0.5320 cost: 2.0057 min: 1.1005 max: 2.8415 USE_META, weight: 0.7881 cost: 1.5104 min: 1.1005 max: 2.8415 USE_META, weight: 0.7857 cost: 1.5149 min: 1.1005 max: 2.8415 USE_META, weight: 0.3108 cost: 2.4336 min: 1.1005 max: 2.8415 USE_META, weight: 0.7168 cost: 1.6484 min: 1.1005 max: 2.8415 USE_META, weight: 0.6175 cost: 1.8404 min: 1.1005 max: 2.8415 USE_META, weight: 0.6841 cost: 1.7115 min: 1.1005 max: 2.8415 USE_META, weight: 0.6051 cost: 1.8644 min: 1.1005 max: 2.8415 USE_META, weight: 0.7084 cost: 1.6645 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.6176 cost: 1.8403 min: 1.1005 max: 2.8415 USE_META, weight: 0.7729 cost: 1.5397 min: 1.1005 max: 2.8415 USE_META, weight: 0.8622 cost: 1.3671 min: 1.1005 max: 2.8415 USE_META, weight: 0.9859 cost: 1.1277 min: 1.1005 max: 2.8415 USE_META, weight: 0.8518 cost: 1.3871 min: 1.1005 max: 2.8415 USE_META, weight: 0.6300 cost: 1.8162 min: 1.1005 max: 2.8415 USE_META, weight: 0.2179 cost: 2.6133 min: 1.1005 max: 2.8415 USE_META, weight: 0.8245 cost: 1.4399 min: 1.1005 max: 2.8415 USE_META, weight: 0.4881 cost: 2.0907 min: 1.1005 max: 2.8415 USE_META, weight: 0.7476 cost: 1.5887 min: 1.1005 max: 2.8415 USE_META, weight: 0.6397 cost: 1.7975 min: 1.1005 max: 2.8415 USE_META, weight: 0.4990 cost: 2.0697 min: 1.1005 max: 2.8415 USE_META, weight: 0.2179 cost: 2.6133 min: 1.1005 max: 2.8415 USE_META, weight: 0.7552 cost: 1.5741 min: 1.1005 max: 2.8415 USE_META, weight: 0.7096 cost: 1.6621 min: 1.1005 max: 2.8415 USE_META, weight: 0.4336 cost: 2.1961 min: 1.1005 max: 2.8415 USE_META, weight: 0.5370 cost: 1.9961 min: 1.1005 max: 2.8415 USE_META, weight: 0.6512 cost: 1.7753 min: 1.1005 max: 2.8415 USE_META, weight: 0.5102 cost: 2.0479 min: 1.1005 max: 2.8415 USE_META, weight: 0.3944 cost: 2.2720 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.8488 cost: 1.3930 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9930 cost: 1.1141 min: 1.1005 max: 2.8415 USE_META, weight: 0.9966 cost: 1.1071 min: 1.1005 max: 2.8415 USE_META, weight: 0.9984 cost: 1.1036 min: 1.1005 max: 2.8415 USE_META, weight: 0.9520 cost: 1.1933 min: 1.1005 max: 2.8415 USE_META, weight: 0.9855 cost: 1.1286 min: 1.1005 max: 2.8415 USE_META, weight: 0.6701 cost: 1.7387 min: 1.1005 max: 2.8415 USE_META, weight: 0.7816 cost: 1.5229 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.9087 cost: 1.2771 min: 1.1005 max: 2.8415 USE_META, weight: 0.6008 cost: 1.8728 min: 1.1005 max: 2.8415 USE_META, weight: 0.8010 cost: 1.4854 min: 1.1005 max: 2.8415 USE_META, weight: 0.5256 cost: 2.0182 min: 1.1005 max: 2.8415 USE_META, weight: 0.7058 cost: 1.6696 min: 1.1005 max: 2.8415 USE_META, weight: 0.5824 cost: 1.9084 min: 1.1005 max: 2.8415 USE_META, weight: 0.6567 cost: 1.7647 min: 1.1005 max: 2.8415 USE_META, weight: 0.4739 cost: 2.1181 min: 1.1005 max: 2.8415 USE_META, weight: 0.5065 cost: 2.0551 min: 1.1005 max: 2.8415 USE_META, weight: 0.4216 cost: 2.2193 min: 1.1005 max: 2.8415 USE_META, weight: 0.5598 cost: 1.9521 min: 1.1005 max: 2.8415 USE_META, weight: 0.8716 cost: 1.3488 min: 1.1005 max: 2.8415 USE_META, weight: 0.7865 cost: 1.5135 min: 1.1005 max: 2.8415 USE_META, weight: 0.8644 cost: 1.3628 min: 1.1005 max: 2.8415 USE_META, weight: 0.7802 cost: 1.5256 min: 1.1005 max: 2.8415 USE_META, weight: 0.8360 cost: 1.4177 min: 1.1005 max: 2.8415 USE_META, weight: 0.6706 cost: 1.7378 min: 1.1005 max: 2.8415 USE_META, weight: 0.6500 cost: 1.7776 min: 1.1005 max: 2.8415 USE_META, weight: 0.5577 cost: 1.9560 min: 1.1005 max: 2.8415 USE_META, weight: 0.6582 cost: 1.7617 min: 1.1005 max: 2.8415 USE_META, weight: 0.5771 cost: 1.9186 min: 1.1005 max: 2.8415 USE_META, weight: 0.8977 cost: 1.2984 min: 1.1005 max: 2.8415 USE_META, weight: 0.5334 cost: 2.0031 min: 1.1005 max: 2.8415 USE_META, weight: 0.6462 cost: 1.7849 min: 1.1005 max: 2.8415 USE_META, weight: 0.5103 cost: 2.0477 min: 1.1005 max: 2.8415 USE_META, weight: 0.5463 cost: 1.9782 min: 1.1005 max: 2.8415 USE_META, weight: 0.7598 cost: 1.5651 min: 1.1005 max: 2.8415 USE_META, weight: 0.8462 cost: 1.3981 min: 1.1005 max: 2.8415 USE_META, weight: 0.8968 cost: 1.3000 min: 1.1005 max: 2.8415 USE_META, weight: 0.7490 cost: 1.5860 min: 1.1005 max: 2.8415 USE_EVALUE, weight: 0.9687 eval: 3.3171 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9687 eval: 3.3171 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9687 eval: 3.3171 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9218 eval: 7.6492 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9218 eval: 7.6492 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9218 eval: 7.6492 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.6612 eval: 31.7000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.6612 eval: 31.7000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.6612 eval: 31.7000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9075 eval: 8.9651 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9075 eval: 8.9651 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9037 eval: 9.3148 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9037 eval: 9.3148 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9037 eval: 9.3148 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.6818 eval: 29.8000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.6818 eval: 29.8000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.6818 eval: 29.8000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9226 eval: 7.5700 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9226 eval: 7.5700 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9226 eval: 7.5700 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9640 eval: 3.7458 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9640 eval: 3.7458 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9640 eval: 3.7458 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.7273 eval: 25.6000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.7273 eval: 25.6000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.7273 eval: 25.6000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8595 eval: 13.4000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8933 eval: 10.2730 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8933 eval: 10.2730 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8933 eval: 10.2730 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9466 eval: 5.3595 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9466 eval: 5.3595 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9466 eval: 5.3595 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8523 eval: 14.0580 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8523 eval: 14.0580 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8523 eval: 14.0580 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8880 eval: 10.7630 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8880 eval: 10.7630 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8880 eval: 10.7630 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9139 eval: 8.3783 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9139 eval: 8.3783 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8714 eval: 12.2940 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8714 eval: 12.2940 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8714 eval: 12.2940 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.1878 eval: 75.4000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.1878 eval: 75.4000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.1878 eval: 75.4000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 1.0000 eval: 0.4270 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 1.0000 eval: 0.4270 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.1000 eval: 83.5000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.1000 eval: 83.5000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.1000 eval: 83.5000 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8497 eval: 14.3010 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8497 eval: 14.3010 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8497 eval: 14.3010 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8820 eval: 11.3220 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8820 eval: 11.3220 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.8820 eval: 11.3220 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9318 eval: 6.7222 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9318 eval: 6.7222 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9318 eval: 6.7222 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9071 eval: 9.0051 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9071 eval: 9.0051 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9071 eval: 9.0051 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9415 eval: 5.8230 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9415 eval: 5.8230 min: 0.4270 max: 83.5000 USE_EVALUE, weight: 0.9415 eval: 5.8230 min: 0.4270 max: 83.5000 Number of contacts in models: 260 Number of contacts in alignments: 67 NUMB_ALIGNS: 67 Adding 4956 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -189.8001, CN propb: -189.8001 weights: 0.2343 constraints: 177 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 177 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 177 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 4779 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 4779 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 4956 # command: