# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0346/ # command:# Making conformation for sequence T0346 numbered 1 through 172 Created new target T0346 from T0346.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0346/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0346//projects/compbio/experiments/protein-predict/casp7/T0346/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0346//projects/compbio/experiments/protein-predict/casp7/T0346/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0346/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0346/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0346)L22.CB, (T0346)C31.CB) [> 2.5501 = 4.2501 < 5.5251] w=1.0000 to align # Constraint # added constraint: constraint((T0346)L22.CB, (T0346)F135.CB) [> 3.7902 = 6.3170 < 8.2121] w=1.0000 to align # Constraint # added constraint: constraint((T0346)L22.CB, (T0346)G136.CA) [> 3.1536 = 5.2561 < 6.8329] w=1.0000 to align # Constraint # added constraint: constraint((T0346)F23.CB, (T0346)F135.CB) [> 3.4587 = 5.7645 < 7.4938] w=1.0000 to align # Constraint # added constraint: constraint((T0346)F23.CB, (T0346)G136.CA) [> 3.0673 = 5.1121 < 6.6458] w=1.0000 to align # Constraint # added constraint: constraint((T0346)C27.CB, (T0346)F135.CB) [> 2.5913 = 4.3188 < 5.6144] w=1.0000 to align # Constraint # added constraint: constraint((T0346)T30.CB, (T0346)V133.CB) [> 3.3026 = 5.5044 < 7.1557] w=1.0000 to align # Constraint # added constraint: constraint((T0346)T30.CB, (T0346)F135.CB) [> 2.5257 = 4.2095 < 5.4724] w=1.0000 to align # Constraint # added constraint: constraint((T0346)C31.CB, (T0346)F135.CB) [> 3.2586 = 5.4310 < 7.0602] w=1.0000 to align # Constraint # added constraint: constraint((T0346)F34.CB, (T0346)F118.CB) [> 4.1765 = 6.9608 < 9.0491] w=1.0000 to align # Constraint # added constraint: constraint((T0346)L37.CB, (T0346)S116.CB) [> 3.4157 = 5.6929 < 7.4008] w=1.0000 to align # Constraint # added constraint: constraint((T0346)C38.CB, (T0346)Y54.CB) [> 3.4283 = 5.7139 < 7.4281] w=1.0000 to align # Constraint # added constraint: constraint((T0346)C38.CB, (T0346)C168.CB) [> 2.6756 = 4.4593 < 5.7971] w=1.0000 to align # Constraint # added constraint: constraint((T0346)C38.CB, (T0346)G169.CA) [> 3.0399 = 5.0665 < 6.5864] w=1.0000 to align # Constraint # added constraint: constraint((T0346)Y54.CB, (T0346)C168.CB) [> 3.0241 = 5.0402 < 6.5523] w=1.0000 to align # Constraint # added constraint: constraint((T0346)K55.CB, (T0346)V165.CB) [> 3.7693 = 6.2821 < 8.1668] w=1.0000 to align # Constraint # added constraint: constraint((T0346)P14.CB, (T0346)I166.CB) [> 3.9481 = 6.5802 < 8.5543] w=1.0000 to align # Constraint # added constraint: constraint((T0346)V15.CB, (T0346)V144.CB) [> 3.4428 = 5.7381 < 7.4595] w=1.0000 to align # Constraint # added constraint: constraint((T0346)G16.CA, (T0346)V144.CB) [> 2.8905 = 4.8175 < 6.2628] w=1.0000 to align # Constraint # added constraint: constraint((T0346)R17.CB, (T0346)V144.CB) [> 4.0533 = 6.7556 < 8.7823] w=1.0000 to align # Constraint # added constraint: constraint((T0346)I18.CB, (T0346)V138.CB) [> 3.6353 = 6.0588 < 7.8764] w=1.0000 to align # Constraint # added constraint: constraint((T0346)I18.CB, (T0346)S140.CB) [> 4.1961 = 6.9935 < 9.0916] w=1.0000 to align # Constraint # added constraint: constraint((T0346)I18.CB, (T0346)G141.CA) [> 2.9782 = 4.9637 < 6.4528] w=1.0000 to align # Constraint # added constraint: constraint((T0346)I18.CB, (T0346)V144.CB) [> 3.0687 = 5.1145 < 6.6489] w=1.0000 to align # Constraint # added constraint: constraint((T0346)I18.CB, (T0346)I145.CB) [> 3.7007 = 6.1679 < 8.0183] w=1.0000 to align # Constraint # added constraint: constraint((T0346)M19.CB, (T0346)V138.CB) [> 4.2455 = 7.0759 < 9.1986] w=1.0000 to align # Constraint # added constraint: constraint((T0346)M19.CB, (T0346)I139.CB) [> 2.9819 = 4.9698 < 6.4607] w=1.0000 to align # Constraint # added constraint: constraint((T0346)M19.CB, (T0346)S140.CB) [> 2.2826 = 3.8044 < 4.9457] w=1.0000 to align # Constraint # added constraint: constraint((T0346)M19.CB, (T0346)G141.CA) [> 3.8655 = 6.4426 < 8.3753] w=1.0000 to align # Constraint # added constraint: constraint((T0346)F20.CB, (T0346)G136.CA) [> 3.5431 = 5.9051 < 7.6767] w=1.0000 to align # Constraint # added constraint: constraint((T0346)F20.CB, (T0346)L137.CB) [> 3.9711 = 6.6186 < 8.6042] w=1.0000 to align # Constraint # added constraint: constraint((T0346)F20.CB, (T0346)V138.CB) [> 3.4965 = 5.8275 < 7.5758] w=1.0000 to align # Constraint # added constraint: constraint((T0346)Q21.CB, (T0346)G136.CA) [> 3.5438 = 5.9063 < 7.6782] w=1.0000 to align # Constraint # added constraint: constraint((T0346)Q21.CB, (T0346)L137.CB) [> 3.1721 = 5.2869 < 6.8729] w=1.0000 to align # Constraint # added constraint: constraint((T0346)Q21.CB, (T0346)I139.CB) [> 2.8284 = 4.7140 < 6.1283] w=1.0000 to align # Constraint # added constraint: constraint((T0346)F89.CB, (T0346)H112.CB) [> 4.2836 = 7.1394 < 9.2812] w=1.0000 to align # Constraint # added constraint: constraint((T0346)E92.CB, (T0346)V133.CB) [> 3.2350 = 5.3917 < 7.0093] w=1.0000 to align # Constraint # added constraint: constraint((T0346)R100.CB, (T0346)P124.CB) [> 3.3612 = 5.6021 < 7.2827] w=1.0000 to align # Constraint # added constraint: constraint((T0346)F102.CB, (T0346)T121.CB) [> 4.0099 = 6.6832 < 8.6882] w=1.0000 to align # Constraint # added constraint: constraint((T0346)F102.CB, (T0346)L137.CB) [> 3.3856 = 5.6427 < 7.3355] w=1.0000 to align # Constraint # added constraint: constraint((T0346)F102.CB, (T0346)V138.CB) [> 2.3165 = 3.8609 < 5.0191] w=1.0000 to align # Constraint # added constraint: constraint((T0346)L103.CB, (T0346)T121.CB) [> 2.8664 = 4.7773 < 6.2105] w=1.0000 to align # Constraint # added constraint: constraint((T0346)L103.CB, (T0346)V134.CB) [> 3.4661 = 5.7768 < 7.5098] w=1.0000 to align # Constraint # added constraint: constraint((T0346)L103.CB, (T0346)G136.CA) [> 3.9433 = 6.5722 < 8.5438] w=1.0000 to align # Constraint # added constraint: constraint((T0346)L103.CB, (T0346)L137.CB) [> 3.4079 = 5.6798 < 7.3838] w=1.0000 to align # Constraint # added constraint: constraint((T0346)L104.CB, (T0346)F118.CB) [> 3.6921 = 6.1535 < 7.9995] w=1.0000 to align # Constraint # added constraint: constraint((T0346)L104.CB, (T0346)V134.CB) [> 4.2018 = 7.0031 < 9.1040] w=1.0000 to align # Constraint # added constraint: constraint((T0346)N114.CB, (T0346)V133.CB) [> 4.0179 = 6.6965 < 8.7054] w=1.0000 to align # Constraint # added constraint: constraint((T0346)T122.CB, (T0346)I145.CB) [> 3.8719 = 6.4531 < 8.3890] w=1.0000 to align # Constraint # added constraint: constraint((T0346)L151.CB, (T0346)A161.CB) [> 3.4355 = 5.7259 < 7.4437] w=1.0000 to align # Constraint # added constraint: constraint((T0346)K55.CB, (T0346)D167.CB) [> 3.6850 = 6.1416 < 7.9841] w=1.0000 to align # Constraint # added constraint: constraint((T0346)K55.CB, (T0346)C168.CB) [> 3.5216 = 5.8693 < 7.6301] w=1.0000 to align # Constraint # added constraint: constraint((T0346)G56.CA, (T0346)V165.CB) [> 3.2910 = 5.4850 < 7.1305] w=1.0000 to align # Constraint # added constraint: constraint((T0346)G56.CA, (T0346)I166.CB) [> 4.0518 = 6.7530 < 8.7789] w=1.0000 to align # Constraint # added constraint: constraint((T0346)S57.CB, (T0346)G71.CA) [> 3.0359 = 5.0598 < 6.5778] w=1.0000 to align # Constraint # added constraint: constraint((T0346)S57.CB, (T0346)D72.CB) [> 3.9637 = 6.6062 < 8.5881] w=1.0000 to align # Constraint # added constraint: constraint((T0346)S57.CB, (T0346)V165.CB) [> 3.1949 = 5.3249 < 6.9223] w=1.0000 to align # Constraint # added constraint: constraint((T0346)N65.CB, (T0346)T122.CB) [> 3.8898 = 6.4830 < 8.4279] w=1.0000 to align # Constraint # added constraint: constraint((T0346)N65.CB, (T0346)K123.CB) [> 3.4118 = 5.6863 < 7.3922] w=1.0000 to align # Constraint # added constraint: constraint((T0346)F66.CB, (T0346)T122.CB) [> 3.8573 = 6.4289 < 8.3576] w=1.0000 to align # Constraint # added constraint: constraint((T0346)F66.CB, (T0346)K123.CB) [> 3.6556 = 6.0927 < 7.9205] w=1.0000 to align # Constraint # added constraint: constraint((T0346)G71.CA, (T0346)S116.CB) [> 3.1462 = 5.2437 < 6.8168] w=1.0000 to align # Constraint # added constraint: constraint((T0346)G71.CA, (T0346)Q117.CB) [> 2.9334 = 4.8891 < 6.3558] w=1.0000 to align # Constraint # added constraint: constraint((T0346)G71.CA, (T0346)F118.CB) [> 3.6327 = 6.0546 < 7.8709] w=1.0000 to align # Constraint # added constraint: constraint((T0346)D72.CB, (T0346)S116.CB) [> 4.0061 = 6.6769 < 8.6799] w=1.0000 to align # Constraint # added constraint: constraint((T0346)D72.CB, (T0346)Q117.CB) [> 3.1807 = 5.3012 < 6.8916] w=1.0000 to align # Constraint # added constraint: constraint((T0346)Y88.CB, (T0346)H112.CB) [> 4.1083 = 6.8471 < 8.9012] w=1.0000 to align # Constraint # added constraint: constraint((T0346)H98.CB, (T0346)D129.CB) [> 3.4022 = 5.6703 < 7.3714] w=0.9986 to align # Constraint # added constraint: constraint((T0346)H98.CB, (T0346)V134.CB) [> 3.7558 = 6.2596 < 8.1375] w=0.9971 to align # Constraint # added constraint: constraint((T0346)D91.CB, (T0346)V133.CB) [> 3.1675 = 5.2791 < 6.8628] w=0.9971 to align # Constraint # added constraint: constraint((T0346)F20.CB, (T0346)I139.CB) [> 3.8851 = 6.4751 < 8.4177] w=0.9957 to align # Constraint # added constraint: constraint((T0346)L22.CB, (T0346)F34.CB) [> 3.8237 = 6.3729 < 8.2847] w=0.9957 to align # Constraint # added constraint: constraint((T0346)L22.CB, (T0346)L35.CB) [> 3.8683 = 6.4471 < 8.3813] w=0.9957 to align # Constraint # added constraint: constraint((T0346)C27.CB, (T0346)V134.CB) [> 4.4996 = 7.4993 < 9.7491] w=0.9957 to align # Constraint # added constraint: constraint((T0346)F34.CB, (T0346)F135.CB) [> 3.9288 = 6.5480 < 8.5124] w=0.9957 to align # Constraint # added constraint: constraint((T0346)S57.CB, (T0346)G70.CA) [> 3.9744 = 6.6239 < 8.6111] w=0.9957 to align # Constraint # added constraint: constraint((T0346)H60.CB, (T0346)Q69.CB) [> 4.0219 = 6.7032 < 8.7142] w=0.9957 to align # Constraint # added constraint: constraint((T0346)H60.CB, (T0346)G70.CA) [> 3.5161 = 5.8601 < 7.6182] w=0.9957 to align # Constraint # added constraint: constraint((T0346)R61.CB, (T0346)G70.CA) [> 4.1501 = 6.9169 < 8.9920] w=0.9957 to align # Constraint # added constraint: constraint((T0346)V62.CB, (T0346)I148.CB) [> 3.7965 = 6.3274 < 8.2257] w=0.9957 to align # Constraint # added constraint: constraint((T0346)V62.CB, (T0346)E149.CB) [> 3.6943 = 6.1572 < 8.0043] w=0.9957 to align # Constraint # added constraint: constraint((T0346)V62.CB, (T0346)L151.CB) [> 3.8072 = 6.3454 < 8.2490] w=0.9957 to align # Constraint # added constraint: constraint((T0346)V62.CB, (T0346)P159.CB) [> 3.2344 = 5.3907 < 7.0079] w=0.9957 to align # Constraint # added constraint: constraint((T0346)F66.CB, (T0346)A125.CB) [> 4.2006 = 7.0010 < 9.1013] w=0.9957 to align # Constraint # added constraint: constraint((T0346)Q69.CB, (T0346)Q117.CB) [> 3.8987 = 6.4978 < 8.4471] w=0.9957 to align # Constraint # added constraint: constraint((T0346)Q69.CB, (T0346)F118.CB) [> 4.2981 = 7.1635 < 9.3126] w=0.9957 to align # Constraint # added constraint: constraint((T0346)G70.CA, (T0346)Q117.CB) [> 3.4580 = 5.7633 < 7.4923] w=0.9957 to align # Constraint # added constraint: constraint((T0346)K97.CB, (T0346)V134.CB) [> 3.8572 = 6.4286 < 8.3572] w=0.9957 to align # Constraint # added constraint: constraint((T0346)L151.CB, (T0346)Y160.CB) [> 3.9688 = 6.6146 < 8.5990] w=0.9957 to align # Constraint # added constraint: constraint((T0346)A101.CB, (T0346)T121.CB) [> 3.5368 = 5.8947 < 7.6631] w=0.9855 to align # Constraint # added constraint: constraint((T0346)K29.CB, (T0346)F89.CB) [> 3.9934 = 6.6556 < 8.6523] w=0.9855 to align # Constraint # added constraint: constraint((T0346)L104.CB, (T0346)G136.CA) [> 2.4282 = 4.0470 < 5.2611] w=0.9568 to align # Constraint # added constraint: constraint((T0346)M67.CB, (T0346)F119.CB) [> 2.6493 = 4.4156 < 5.7402] w=0.9566 to align # Constraint # added constraint: constraint((T0346)M67.CB, (T0346)I120.CB) [> 3.7019 = 6.1698 < 8.0208] w=0.9566 to align # Constraint # added constraint: constraint((T0346)M67.CB, (T0346)T121.CB) [> 3.0024 = 5.0039 < 6.5051] w=0.9566 to align # Constraint # added constraint: constraint((T0346)M67.CB, (T0346)T122.CB) [> 3.5766 = 5.9610 < 7.7493] w=0.9566 to align # Constraint # added constraint: constraint((T0346)I68.CB, (T0346)F119.CB) [> 3.7583 = 6.2639 < 8.1431] w=0.9566 to align # Constraint # added constraint: constraint((T0346)I68.CB, (T0346)I120.CB) [> 3.0403 = 5.0672 < 6.5874] w=0.9566 to align # Constraint # added constraint: constraint((T0346)I68.CB, (T0346)T122.CB) [> 4.1517 = 6.9195 < 8.9953] w=0.9566 to align # Constraint # added constraint: constraint((T0346)I68.CB, (T0346)I148.CB) [> 3.2463 = 5.4105 < 7.0337] w=0.9566 to align # Constraint # added constraint: constraint((T0346)I120.CB, (T0346)V138.CB) [> 3.8908 = 6.4846 < 8.4300] w=0.9566 to align # Constraint # added constraint: constraint((T0346)V15.CB, (T0346)Q147.CB) [> 3.2941 = 5.4902 < 7.1373] w=0.9566 to align # Constraint # added constraint: constraint((T0346)I26.CB, (T0346)L96.CB) [> 3.6964 = 6.1607 < 8.0089] w=0.9566 to align # Constraint # added constraint: constraint((T0346)T30.CB, (T0346)N114.CB) [> 4.1838 = 6.9731 < 9.0650] w=0.9566 to align # Constraint # added constraint: constraint((T0346)Y54.CB, (T0346)G71.CA) [> 3.4817 = 5.8028 < 7.5437] w=0.9566 to align # Constraint # added constraint: constraint((T0346)H60.CB, (T0346)D72.CB) [> 3.6440 = 6.0733 < 7.8953] w=0.9566 to align # Constraint # added constraint: constraint((T0346)H98.CB, (T0346)P126.CB) [> 3.7220 = 6.2033 < 8.0643] w=0.9566 to align # Constraint # added constraint: constraint((T0346)V15.CB, (T0346)I148.CB) [> 3.9457 = 6.5762 < 8.5491] w=0.9566 to align # Constraint # added constraint: constraint((T0346)G56.CA, (T0346)R164.CB) [> 3.2976 = 5.4960 < 7.1448] w=0.9566 to align # Constraint # added constraint: constraint((T0346)S57.CB, (T0346)R164.CB) [> 4.3040 = 7.1734 < 9.3254] w=0.9566 to align # Constraint # added constraint: constraint((T0346)S105.CB, (T0346)F118.CB) [> 3.9820 = 6.6366 < 8.6276] w=0.9566 to align # Constraint # added constraint: constraint((T0346)S105.CB, (T0346)H132.CB) [> 2.7990 = 4.6650 < 6.0645] w=0.9566 to align # Constraint # added constraint: constraint((T0346)S105.CB, (T0346)V133.CB) [> 3.8193 = 6.3655 < 8.2752] w=0.9566 to align # Constraint # added constraint: constraint((T0346)S105.CB, (T0346)F135.CB) [> 4.1143 = 6.8573 < 8.9144] w=0.9566 to align # Constraint # added constraint: constraint((T0346)M106.CB, (T0346)F118.CB) [> 3.4592 = 5.7653 < 7.4949] w=0.9566 to align # Constraint # added constraint: constraint((T0346)M106.CB, (T0346)H132.CB) [> 3.5163 = 5.8605 < 7.6187] w=0.9566 to align # Constraint # added constraint: constraint((T0346)A107.CB, (T0346)H132.CB) [> 4.2498 = 7.0830 < 9.2078] w=0.9566 to align # Constraint # added constraint: constraint((T0346)F66.CB, (T0346)T121.CB) [> 4.5229 = 7.5382 < 9.7997] w=0.9566 to align # Constraint # added constraint: constraint((T0346)F20.CB, (T0346)L104.CB) [> 3.4059 = 5.6765 < 7.3794] w=0.9553 to align # Constraint # added constraint: constraint((T0346)F89.CB, (T0346)N114.CB) [> 3.2271 = 5.3785 < 6.9921] w=0.9553 to align # Constraint # added constraint: constraint((T0346)F102.CB, (T0346)F142.CB) [> 3.1802 = 5.3003 < 6.8903] w=0.9553 to align # Constraint # added constraint: constraint((T0346)L104.CB, (T0346)L137.CB) [> 3.6558 = 6.0931 < 7.9210] w=0.9553 to align # Constraint # added constraint: constraint((T0346)L104.CB, (T0346)V138.CB) [> 4.2081 = 7.0134 < 9.1174] w=0.9553 to align # Constraint # added constraint: constraint((T0346)A107.CB, (T0346)Q117.CB) [> 2.4256 = 4.0426 < 5.2554] w=0.9552 to align # Constraint # added constraint: constraint((T0346)L103.CB, (T0346)I120.CB) [> 4.2729 = 7.1215 < 9.2579] w=0.9537 to align # Constraint # added constraint: constraint((T0346)F102.CB, (T0346)I145.CB) [> 4.1138 = 6.8564 < 8.9133] w=0.9524 to align # Constraint # added constraint: constraint((T0346)F102.CB, (T0346)I120.CB) [> 4.0595 = 6.7658 < 8.7955] w=0.9523 to align # Constraint # added constraint: constraint((T0346)G70.CA, (T0346)F119.CB) [> 4.1219 = 6.8698 < 8.9307] w=0.9523 to align # Constraint # added constraint: constraint((T0346)Q69.CB, (T0346)F119.CB) [> 2.4611 = 4.1018 < 5.3323] w=0.9523 to align # Constraint # added constraint: constraint((T0346)F23.CB, (T0346)L137.CB) [> 4.6322 = 7.7203 < 10.0364] w=0.9523 to align # Constraint # added constraint: constraint((T0346)A101.CB, (T0346)T122.CB) [> 3.3012 = 5.5021 < 7.1527] w=0.9423 to align # Constraint # added constraint: constraint((T0346)E82.CB, (T0346)S116.CB) [> 3.4390 = 5.7316 < 7.4511] w=0.9409 to align # Constraint # added constraint: constraint((T0346)A101.CB, (T0346)P124.CB) [> 4.1325 = 6.8875 < 8.9537] w=0.9409 to align # Constraint # added constraint: constraint((T0346)A101.CB, (T0346)K123.CB) [> 3.4720 = 5.7867 < 7.5227] w=0.9409 to align # Constraint # added constraint: constraint((T0346)L104.CB, (T0346)I120.CB) [> 3.4637 = 5.7729 < 7.5047] w=0.9407 to align # Constraint # added constraint: constraint((T0346)A101.CB, (T0346)F142.CB) [> 4.3028 = 7.1714 < 9.3229] w=0.9248 to align # Constraint # added constraint: constraint((T0346)L35.CB, (T0346)V170.CB) [> 3.5939 = 5.9898 < 7.7867] w=0.9137 to align # Constraint # added constraint: constraint((T0346)M106.CB, (T0346)V133.CB) [> 2.7996 = 4.6660 < 6.0658] w=0.9134 to align # Constraint # added constraint: constraint((T0346)S105.CB, (T0346)V134.CB) [> 2.8493 = 4.7489 < 6.1736] w=0.9134 to align # Constraint # added constraint: constraint((T0346)L104.CB, (T0346)F119.CB) [> 4.5470 = 7.5783 < 9.8518] w=0.9133 to align # Constraint # added constraint: constraint((T0346)R17.CB, (T0346)G141.CA) [> 3.9543 = 6.5904 < 8.5676] w=0.9133 to align # Constraint # added constraint: constraint((T0346)G16.CA, (T0346)G141.CA) [> 4.4461 = 7.4101 < 9.6332] w=0.9133 to align # Constraint # added constraint: constraint((T0346)M106.CB, (T0346)Q117.CB) [> 4.2526 = 7.0876 < 9.2139] w=0.9133 to align # Constraint # added constraint: constraint((T0346)I68.CB, (T0346)I145.CB) [> 3.7115 = 6.1859 < 8.0416] w=0.9133 to align # Constraint # added constraint: constraint((T0346)S105.CB, (T0346)F119.CB) [> 3.5810 = 5.9683 < 7.7588] w=0.9133 to align # Constraint # added constraint: constraint((T0346)M67.CB, (T0346)A125.CB) [> 4.1648 = 6.9413 < 9.0237] w=0.9133 to align # Constraint # added constraint: constraint((T0346)F59.CB, (T0346)P159.CB) [> 3.9546 = 6.5910 < 8.5683] w=0.9133 to align # Constraint # added constraint: constraint((T0346)F59.CB, (T0346)I148.CB) [> 3.7785 = 6.2975 < 8.1868] w=0.9133 to align # Constraint # added constraint: constraint((T0346)T58.CB, (T0346)V165.CB) [> 4.4616 = 7.4360 < 9.6669] w=0.9133 to align # Constraint # added constraint: constraint((T0346)L96.CB, (T0346)V134.CB) [> 2.3174 = 3.8623 < 5.0210] w=0.9121 to align # Constraint # added constraint: constraint((T0346)T30.CB, (T0346)M106.CB) [> 3.7823 = 6.3039 < 8.1951] w=0.9120 to align # Constraint # added constraint: constraint((T0346)S105.CB, (T0346)T121.CB) [> 4.1156 = 6.8593 < 8.9171] w=0.9120 to align # Constraint # added constraint: constraint((T0346)M106.CB, (T0346)F135.CB) [> 3.9338 = 6.5563 < 8.5232] w=0.9120 to align # Constraint # added constraint: constraint((T0346)A107.CB, (T0346)F118.CB) [> 3.5191 = 5.8651 < 7.6246] w=0.9120 to align # Constraint # added constraint: constraint((T0346)H98.CB, (T0346)T121.CB) [> 3.4927 = 5.8211 < 7.5674] w=0.9107 to align # Constraint # added constraint: constraint((T0346)V62.CB, (T0346)V163.CB) [> 4.2958 = 7.1596 < 9.3075] w=0.9094 to align # Constraint # added constraint: constraint((T0346)N33.CB, (T0346)S83.CB) [> 3.1662 = 5.2771 < 6.8602] w=0.9092 to align # Constraint # added constraint: constraint((T0346)H98.CB, (T0346)L128.CB) [> 2.9840 = 4.9733 < 6.4653] w=0.9092 to align # Constraint # added constraint: constraint((T0346)Q69.CB, (T0346)A107.CB) [> 3.4832 = 5.8054 < 7.5470] w=0.9091 to align # Constraint # added constraint: constraint((T0346)L151.CB, (T0346)V163.CB) [> 3.7571 = 6.2618 < 8.1403] w=0.9089 to align # Constraint # added constraint: constraint((T0346)F59.CB, (T0346)G70.CA) [> 2.8989 = 4.8316 < 6.2810] w=0.9089 to align # Constraint # added constraint: constraint((T0346)F59.CB, (T0346)Q69.CB) [> 3.9063 = 6.5105 < 8.4636] w=0.9089 to align # Constraint # added constraint: constraint((T0346)T58.CB, (T0346)G70.CA) [> 4.1006 = 6.8343 < 8.8845] w=0.9089 to align # Constraint # added constraint: constraint((T0346)C38.CB, (T0346)V170.CB) [> 3.6609 = 6.1016 < 7.9321] w=0.8992 to align # Constraint # added constraint: constraint((T0346)S57.CB, (T0346)F73.CB) [> 2.8042 = 4.6736 < 6.0757] w=0.8945 to align # Constraint # added constraint: constraint((T0346)C27.CB, (T0346)E92.CB) [> 2.9294 = 4.8823 < 6.3470] w=0.8830 to align # Constraint # added constraint: constraint((T0346)T30.CB, (T0346)E92.CB) [> 2.9890 = 4.9817 < 6.4763] w=0.8830 to align # Constraint # added constraint: constraint((T0346)M106.CB, (T0346)G115.CA) [> 4.3817 = 7.3028 < 9.4936] w=0.8815 to align # Constraint # added constraint: constraint((T0346)D91.CB, (T0346)N108.CB) [> 4.5691 = 7.6152 < 9.8998] w=0.8802 to align # Constraint # added constraint: constraint((T0346)K29.CB, (T0346)E92.CB) [> 3.2645 = 5.4407 < 7.0730] w=0.8802 to align # Constraint # added constraint: constraint((T0346)F59.CB, (T0346)I68.CB) [> 3.1328 = 5.2214 < 6.7878] w=0.8699 to align # Constraint # added constraint: constraint((T0346)T58.CB, (T0346)D162.CB) [> 3.4635 = 5.7725 < 7.5042] w=0.8699 to align # Constraint # added constraint: constraint((T0346)F59.CB, (T0346)V163.CB) [> 2.6410 = 4.4017 < 5.7223] w=0.8699 to align # Constraint # added constraint: constraint((T0346)T58.CB, (T0346)R164.CB) [> 3.1726 = 5.2877 < 6.8740] w=0.8699 to align # Constraint # added constraint: constraint((T0346)T58.CB, (T0346)V163.CB) [> 3.6039 = 6.0065 < 7.8085] w=0.8699 to align # Constraint # added constraint: constraint((T0346)F23.CB, (T0346)L96.CB) [> 3.9459 = 6.5765 < 8.5495] w=0.8687 to align # Constraint # added constraint: constraint((T0346)A107.CB, (T0346)F119.CB) [> 3.2773 = 5.4622 < 7.1008] w=0.8686 to align # Constraint # added constraint: constraint((T0346)S105.CB, (T0346)L128.CB) [> 4.0822 = 6.8037 < 8.8448] w=0.8686 to align # Constraint # added constraint: constraint((T0346)N33.CB, (T0346)I84.CB) [> 3.2633 = 5.4388 < 7.0705] w=0.8660 to align # Constraint # added constraint: constraint((T0346)N108.CB, (T0346)Q117.CB) [> 4.6243 = 7.7071 < 10.0193] w=0.8657 to align # Constraint # added constraint: constraint((T0346)G70.CA, (T0346)A107.CB) [> 4.4973 = 7.4954 < 9.7440] w=0.8657 to align # Constraint # added constraint: constraint((T0346)F89.CB, (T0346)G115.CA) [> 4.0098 = 6.6830 < 8.6879] w=0.8541 to align # Constraint # added constraint: constraint((T0346)N33.CB, (T0346)F89.CB) [> 4.1703 = 6.9506 < 9.0357] w=0.8541 to align # Constraint # added constraint: constraint((T0346)N93.CB, (T0346)V133.CB) [> 3.9290 = 6.5483 < 8.5128] w=0.8541 to align # Constraint # added constraint: constraint((T0346)V62.CB, (T0346)T153.CB) [> 2.9458 = 4.9097 < 6.3826] w=0.8516 to align # Constraint # added constraint: constraint((T0346)H60.CB, (T0346)G76.CA) [> 3.2204 = 5.3673 < 6.9775] w=0.8515 to align # Constraint # added constraint: constraint((T0346)P28.CB, (T0346)E92.CB) [> 4.5603 = 7.6005 < 9.8806] w=0.8512 to align # Constraint # added constraint: constraint((T0346)S105.CB, (T0346)G136.CA) [> 4.6753 = 7.7922 < 10.1298] w=0.8397 to align # Constraint # added constraint: constraint((T0346)D72.CB, (T0346)G81.CA) [> 3.2239 = 5.3733 < 6.9852] w=0.8384 to align # Constraint # added constraint: constraint((T0346)L103.CB, (T0346)V138.CB) [> 4.6150 = 7.6916 < 9.9991] w=0.8279 to align # Constraint # added constraint: constraint((T0346)M67.CB, (T0346)K123.CB) [> 4.5034 = 7.5058 < 9.7575] w=0.8265 to align # Constraint # added constraint: constraint((T0346)H60.CB, (T0346)P159.CB) [> 4.4361 = 7.3935 < 9.6115] w=0.8265 to align # Constraint # added constraint: constraint((T0346)R100.CB, (T0346)T121.CB) [> 4.1936 = 6.9893 < 9.0862] w=0.8265 to align # Constraint # added constraint: constraint((T0346)S39.CB, (T0346)V170.CB) [> 3.3504 = 5.5840 < 7.2592] w=0.8226 to align # Constraint # added constraint: constraint((T0346)G80.CA, (T0346)Q117.CB) [> 4.3553 = 7.2589 < 9.4366] w=0.8226 to align # Constraint # added constraint: constraint((T0346)C31.CB, (T0346)G136.CA) [> 4.4196 = 7.3660 < 9.5759] w=0.8222 to align # Constraint # added constraint: constraint((T0346)S57.CB, (T0346)G76.CA) [> 4.0825 = 6.8042 < 8.8454] w=0.8095 to align # Constraint # added constraint: constraint((T0346)G78.CA, (T0346)Q117.CB) [> 3.9031 = 6.5052 < 8.4567] w=0.8082 to align # Constraint # added constraint: constraint((T0346)K32.CB, (T0346)I84.CB) [> 4.4209 = 7.3682 < 9.5786] w=0.7937 to align # Constraint # added constraint: constraint((T0346)C36.CB, (T0346)I84.CB) [> 2.8772 = 4.7954 < 6.2340] w=0.7937 to align # Constraint # added constraint: constraint((T0346)L37.CB, (T0346)I84.CB) [> 4.0161 = 6.6936 < 8.7017] w=0.7937 to align # Constraint # added constraint: constraint((T0346)F73.CB, (T0346)S116.CB) [> 3.8667 = 6.4444 < 8.3778] w=0.7937 to align # Constraint # added constraint: constraint((T0346)S39.CB, (T0346)G169.CA) [> 3.3037 = 5.5062 < 7.1581] w=0.7934 to align # Constraint # added constraint: constraint((T0346)E92.CB, (T0346)F135.CB) [> 4.5457 = 7.5762 < 9.8490] w=0.7934 to align # Constraint # added constraint: constraint((T0346)F23.CB, (T0346)V134.CB) [> 4.5347 = 7.5578 < 9.8252] w=0.7836 to align # Constraint # added constraint: constraint((T0346)R61.CB, (T0346)R158.CB) [> 4.1123 = 6.8539 < 8.9101] w=0.7832 to align # Constraint # added constraint: constraint((T0346)C27.CB, (T0346)L96.CB) [> 4.3416 = 7.2360 < 9.4068] w=0.7820 to align # Constraint # added constraint: constraint((T0346)K55.CB, (T0346)I166.CB) [> 4.3835 = 7.3058 < 9.4976] w=0.7802 to align # Constraint # added constraint: constraint((T0346)T58.CB, (T0346)P159.CB) [> 4.5565 = 7.5941 < 9.8724] w=0.7788 to align # Constraint # added constraint: constraint((T0346)G81.CA, (T0346)Q117.CB) [> 3.8425 = 6.4041 < 8.3254] w=0.7648 to align # Constraint # added constraint: constraint((T0346)R61.CB, (T0346)G78.CA) [> 4.2484 = 7.0807 < 9.2049] w=0.7648 to align # Constraint # added constraint: constraint((T0346)N33.CB, (T0346)Y85.CB) [> 4.2422 = 7.0703 < 9.1913] w=0.7503 to align # Constraint # added constraint: constraint((T0346)D7.CB, (T0346)C168.CB) [> 4.1059 = 6.8432 < 8.8962] w=0.7372 to align # Constraint # added constraint: constraint((T0346)D7.CB, (T0346)R17.CB) [> 3.1663 = 5.2772 < 6.8603] w=0.7372 to align # Constraint # added constraint: constraint((T0346)F6.CB, (T0346)C168.CB) [> 3.0137 = 5.0228 < 6.5296] w=0.7372 to align # Constraint # added constraint: constraint((T0346)H5.CB, (T0346)M19.CB) [> 3.0062 = 5.0104 < 6.5135] w=0.7372 to align # Constraint # added constraint: constraint((T0346)F94.CB, (T0346)G130.CA) [> 2.6094 = 4.3491 < 5.6538] w=0.7370 to align # Constraint # added constraint: constraint((T0346)C4.CB, (T0346)L35.CB) [> 3.6103 = 6.0171 < 7.8222] w=0.7357 to align # Constraint # added constraint: constraint((T0346)D7.CB, (T0346)D167.CB) [> 2.4247 = 4.0412 < 5.2535] w=0.7227 to align # Constraint # added constraint: constraint((T0346)I8.CB, (T0346)R17.CB) [> 4.3918 = 7.3196 < 9.5155] w=0.7227 to align # Constraint # added constraint: constraint((T0346)I8.CB, (T0346)I18.CB) [> 3.8230 = 6.3716 < 8.2831] w=0.7227 to align # Constraint # added constraint: constraint((T0346)I8.CB, (T0346)V165.CB) [> 3.7924 = 6.3208 < 8.2170] w=0.7227 to align # Constraint # added constraint: constraint((T0346)C4.CB, (T0346)L22.CB) [> 3.8836 = 6.4727 < 8.4145] w=0.7097 to align # Constraint # added constraint: constraint((T0346)C4.CB, (T0346)M19.CB) [> 4.3800 = 7.3000 < 9.4900] w=0.7083 to align # Constraint # added constraint: constraint((T0346)C4.CB, (T0346)F20.CB) [> 3.1302 = 5.2170 < 6.7821] w=0.7083 to align # Constraint # added constraint: constraint((T0346)C4.CB, (T0346)C38.CB) [> 2.6925 = 4.4875 < 5.8338] w=0.7083 to align # Constraint # added constraint: constraint((T0346)C4.CB, (T0346)C168.CB) [> 4.0825 = 6.8042 < 8.8454] w=0.7083 to align # Constraint # added constraint: constraint((T0346)C4.CB, (T0346)G169.CA) [> 3.3644 = 5.6074 < 7.2896] w=0.7083 to align # Constraint # added constraint: constraint((T0346)H5.CB, (T0346)R17.CB) [> 3.3024 = 5.5040 < 7.1551] w=0.7083 to align # Constraint # added constraint: constraint((T0346)H5.CB, (T0346)I18.CB) [> 4.0252 = 6.7087 < 8.7213] w=0.7083 to align # Constraint # added constraint: constraint((T0346)H5.CB, (T0346)C168.CB) [> 3.8185 = 6.3642 < 8.2734] w=0.7083 to align # Constraint # added constraint: constraint((T0346)F6.CB, (T0346)R17.CB) [> 4.1013 = 6.8356 < 8.8862] w=0.7083 to align # Constraint # added constraint: constraint((T0346)F6.CB, (T0346)I18.CB) [> 2.8551 = 4.7584 < 6.1859] w=0.7083 to align # Constraint # added constraint: constraint((T0346)F6.CB, (T0346)Y54.CB) [> 4.3409 = 7.2349 < 9.4054] w=0.7083 to align # Constraint # added constraint: constraint((T0346)F6.CB, (T0346)V165.CB) [> 3.0313 = 5.0522 < 6.5679] w=0.7083 to align # Constraint # added constraint: constraint((T0346)D7.CB, (T0346)G16.CA) [> 3.8100 = 6.3499 < 8.2549] w=0.7083 to align # Constraint # added constraint: constraint((T0346)D7.CB, (T0346)V165.CB) [> 4.2629 = 7.1048 < 9.2362] w=0.7083 to align # Constraint # added constraint: constraint((T0346)D7.CB, (T0346)I166.CB) [> 2.8492 = 4.7486 < 6.1732] w=0.7083 to align # Constraint # added constraint: constraint((T0346)Y54.CB, (T0346)F73.CB) [> 3.7640 = 6.2733 < 8.1552] w=0.7070 to align # Constraint # added constraint: constraint((T0346)F119.CB, (T0346)H132.CB) [> 4.7121 = 7.8534 < 10.2095] w=0.6964 to align # Constraint # added constraint: constraint((T0346)C4.CB, (T0346)V170.CB) [> 3.2597 = 5.4328 < 7.0626] w=0.6954 to align # Constraint # added constraint: constraint((T0346)I8.CB, (T0346)I166.CB) [> 3.9635 = 6.6059 < 8.5876] w=0.6938 to align # Constraint # added constraint: constraint((T0346)I8.CB, (T0346)V144.CB) [> 3.4677 = 5.7796 < 7.5134] w=0.6938 to align # Constraint # added constraint: constraint((T0346)F6.CB, (T0346)D167.CB) [> 4.4983 = 7.4971 < 9.7462] w=0.6938 to align # Constraint # added constraint: constraint((T0346)I18.CB, (T0346)I120.CB) [> 4.5992 = 7.6653 < 9.9649] w=0.6935 to align # Constraint # added constraint: constraint((T0346)F94.CB, (T0346)V133.CB) [> 3.9363 = 6.5605 < 8.5286] w=0.6924 to align # Constraint # added constraint: constraint((T0346)C4.CB, (T0346)F34.CB) [> 4.2130 = 7.0216 < 9.1280] w=0.6924 to align # Constraint # added constraint: constraint((T0346)I8.CB, (T0346)I148.CB) [> 3.8878 = 6.4796 < 8.4235] w=0.6794 to align # Constraint # added constraint: constraint((T0346)H5.CB, (T0346)F20.CB) [> 4.4262 = 7.3770 < 9.5901] w=0.6794 to align # Constraint # added constraint: constraint((T0346)V63.CB, (T0346)T153.CB) [> 4.0844 = 6.8073 < 8.8495] w=0.6785 to align # Constraint # added constraint: constraint((T0346)G56.CA, (T0346)F73.CB) [> 4.3770 = 7.2951 < 9.4836] w=0.6781 to align # Constraint # added constraint: constraint((T0346)E9.CB, (T0346)I166.CB) [> 2.6103 = 4.3505 < 5.6557] w=0.6781 to align # Constraint # added constraint: constraint((T0346)I26.CB, (T0346)N93.CB) [> 4.2579 = 7.0965 < 9.2254] w=0.6781 to align # Constraint # added constraint: constraint((T0346)L22.CB, (T0346)L104.CB) [> 4.6029 = 7.6716 < 9.9730] w=0.6662 to align # Constraint # added constraint: constraint((T0346)Q69.CB, (T0346)G78.CA) [> 4.6470 = 7.7451 < 10.0686] w=0.6636 to align # Constraint # added constraint: constraint((T0346)K29.CB, (T0346)Y85.CB) [> 4.6397 = 7.7329 < 10.0527] w=0.6636 to align # Constraint # added constraint: constraint((T0346)Q21.CB, (T0346)V138.CB) [> 4.7038 = 7.8397 < 10.1917] w=0.6544 to align # Constraint # added constraint: constraint((T0346)I18.CB, (T0346)F142.CB) [> 4.6269 = 7.7116 < 10.0250] w=0.6535 to align # Constraint # added constraint: constraint((T0346)F94.CB, (T0346)V134.CB) [> 4.5909 = 7.6515 < 9.9469] w=0.6504 to align # Constraint # added constraint: constraint((T0346)I8.CB, (T0346)R164.CB) [> 4.2212 = 7.0354 < 9.1460] w=0.6504 to align # Constraint # added constraint: constraint((T0346)I8.CB, (T0346)V163.CB) [> 3.9035 = 6.5058 < 8.4575] w=0.6504 to align # Constraint # added constraint: constraint((T0346)F6.CB, (T0346)F20.CB) [> 4.5274 = 7.5457 < 9.8094] w=0.6504 to align # Constraint # added constraint: constraint((T0346)R61.CB, (T0346)F119.CB) [> 4.6492 = 7.7487 < 10.0732] w=0.6501 to align # Constraint # added constraint: constraint((T0346)N11.CB, (T0346)A161.CB) [> 2.6925 = 4.4875 < 5.8337] w=0.6491 to align # Constraint # added constraint: constraint((T0346)I10.CB, (T0346)A161.CB) [> 2.9923 = 4.9871 < 6.4833] w=0.6491 to align # Constraint # added constraint: constraint((T0346)H5.CB, (T0346)C38.CB) [> 4.5751 = 7.6251 < 9.9127] w=0.6491 to align # Constraint # added constraint: constraint((T0346)I10.CB, (T0346)V163.CB) [> 3.1002 = 5.1670 < 6.7171] w=0.6347 to align # Constraint # added constraint: constraint((T0346)H60.CB, (T0346)R158.CB) [> 3.5793 = 5.9654 < 7.7551] w=0.6111 to align # Constraint # added constraint: constraint((T0346)F59.CB, (T0346)V165.CB) [> 4.6642 = 7.7737 < 10.1058] w=0.6097 to align # Constraint # added constraint: constraint((T0346)Q3.CB, (T0346)Q21.CB) [> 3.4059 = 5.6766 < 7.3795] w=0.6085 to align # Constraint # added constraint: constraint((T0346)Q3.CB, (T0346)L22.CB) [> 4.3710 = 7.2849 < 9.4704] w=0.6071 to align # Constraint # added constraint: constraint((T0346)Q3.CB, (T0346)M19.CB) [> 3.5522 = 5.9203 < 7.6964] w=0.6071 to align # Constraint # added constraint: constraint((T0346)L37.CB, (T0346)G71.CA) [> 4.6327 = 7.7212 < 10.0376] w=0.6058 to align # Constraint # added constraint: constraint((T0346)E9.CB, (T0346)R164.CB) [> 2.8823 = 4.8038 < 6.2450] w=0.6058 to align # Constraint # added constraint: constraint((T0346)G110.CA, (T0346)V131.CB) [> 4.6181 = 7.6968 < 10.0058] w=0.6058 to align # Constraint # added constraint: constraint((T0346)S39.CB, (T0346)C168.CB) [> 4.5354 = 7.5590 < 9.8267] w=0.5769 to align # Constraint # added constraint: constraint((T0346)L37.CB, (T0346)S83.CB) [> 4.5520 = 7.5866 < 9.8626] w=0.5637 to align # Constraint # added constraint: constraint((T0346)L37.CB, (T0346)F73.CB) [> 4.6175 = 7.6959 < 10.0047] w=0.5624 to align # Constraint # added constraint: constraint((T0346)M19.CB, (T0346)L171.CB) [> 4.1880 = 6.9800 < 9.0740] w=0.5624 to align # Constraint # added constraint: constraint((T0346)T58.CB, (T0346)D72.CB) [> 4.5887 = 7.6478 < 9.9422] w=0.5624 to align # Constraint # added constraint: constraint((T0346)F34.CB, (T0346)L104.CB) [> 4.5680 = 7.6133 < 9.8973] w=0.5624 to align # Constraint # added constraint: constraint((T0346)L104.CB, (T0346)T121.CB) [> 4.6107 = 7.6844 < 9.9897] w=0.5229 to align # Constraint # added constraint: constraint((T0346)L103.CB, (T0346)A125.CB) [> 4.5889 = 7.6482 < 9.9426] w=0.5219 to align # Constraint # added constraint: constraint((T0346)Q69.CB, (T0346)I120.CB) [> 4.7495 = 7.9158 < 10.2906] w=0.5200 to align # Constraint # added constraint: constraint((T0346)F59.CB, (T0346)R164.CB) [> 4.5310 = 7.5516 < 9.8171] w=0.5190 to align # Constraint # added constraint: constraint((T0346)K64.CB, (T0346)T153.CB) [> 3.4807 = 5.8012 < 7.5415] w=0.5050 to align # Constraint # added constraint: constraint((T0346)R100.CB, (T0346)K123.CB) [> 4.4090 = 7.3484 < 9.5529] w=0.4914 to align # Constraint # added constraint: constraint((T0346)G71.CA, (T0346)V165.CB) [> 4.5348 = 7.5580 < 9.8254] w=0.4810 to align # Constraint # added constraint: constraint((T0346)H60.CB, (T0346)G71.CA) [> 4.5952 = 7.6586 < 9.9562] w=0.4810 to align # Constraint # added constraint: constraint((T0346)V15.CB, (T0346)V163.CB) [> 3.5872 = 5.9787 < 7.7723] w=0.4810 to align # Constraint # added constraint: constraint((T0346)F102.CB, (T0346)T122.CB) [> 4.4011 = 7.3351 < 9.5356] w=0.4800 to align # Constraint # added constraint: constraint((T0346)I95.CB, (T0346)V134.CB) [> 4.6138 = 7.6897 < 9.9966] w=0.4797 to align # Constraint # added constraint: constraint((T0346)G71.CA, (T0346)A107.CB) [> 4.7267 = 7.8778 < 10.2412] w=0.4771 to align # Constraint # added constraint: constraint((T0346)I68.CB, (T0346)V163.CB) [> 4.7020 = 7.8367 < 10.1877] w=0.4752 to align # Constraint # added constraint: constraint((T0346)P2.CB, (T0346)C31.CB) [> 3.8810 = 6.4683 < 8.4088] w=0.4609 to align # Constraint # added constraint: constraint((T0346)L37.CB, (T0346)C53.CB) [> 2.8799 = 4.7998 < 6.2398] w=0.4490 to align # Constraint # added constraint: constraint((T0346)G86.CA, (T0346)G115.CA) [> 4.4386 = 7.3976 < 9.6170] w=0.4376 to align # Constraint # added constraint: constraint((T0346)R61.CB, (T0346)P159.CB) [> 4.6344 = 7.7241 < 10.0413] w=0.4366 to align # Constraint # added constraint: constraint((T0346)S105.CB, (T0346)I120.CB) [> 4.7315 = 7.8859 < 10.2516] w=0.4337 to align # Constraint # added constraint: constraint((T0346)K64.CB, (T0346)T122.CB) [> 4.4539 = 7.4231 < 9.6500] w=0.4337 to align # Constraint # added constraint: constraint((T0346)F94.CB, (T0346)V131.CB) [> 4.6414 = 7.7357 < 10.0565] w=0.4336 to align # Constraint # added constraint: constraint((T0346)F59.CB, (T0346)G71.CA) [> 4.6698 = 7.7830 < 10.1179] w=0.3928 to align # Constraint # added constraint: constraint((T0346)N108.CB, (T0346)V131.CB) [> 4.7241 = 7.8735 < 10.2356] w=0.3918 to align # Constraint # added constraint: constraint((T0346)C53.CB, (T0346)F73.CB) [> 3.9459 = 6.5766 < 8.5495] w=0.3899 to align # Constraint # added constraint: constraint((T0346)S24.CB, (T0346)L35.CB) [> 4.6248 = 7.7079 < 10.0203] w=0.3889 to align # Constraint # added constraint: constraint((T0346)D91.CB, (T0346)M106.CB) [> 4.6777 = 7.7961 < 10.1350] w=0.3756 to align # Constraint # added constraint: constraint((T0346)N108.CB, (T0346)V133.CB) [> 4.5492 = 7.5820 < 9.8567] w=0.3498 to align # Constraint # added constraint: constraint((T0346)R12.CB, (T0346)I166.CB) [> 3.3977 = 5.6628 < 7.3617] w=0.3496 to align # Constraint # added constraint: constraint((T0346)G70.CA, (T0346)V165.CB) [> 4.6896 = 7.8159 < 10.1607] w=0.3465 to align # Constraint # added constraint: constraint((T0346)G16.CA, (T0346)Q147.CB) [> 4.6874 = 7.8123 < 10.1560] w=0.3465 to align # Constraint # added constraint: constraint((T0346)C53.CB, (T0346)C168.CB) [> 4.4545 = 7.4242 < 9.6515] w=0.3463 to align # Constraint # added constraint: constraint((T0346)G78.CA, (T0346)A107.CB) [> 4.7232 = 7.8721 < 10.2337] w=0.3325 to align # Constraint # added constraint: constraint((T0346)L52.CB, (T0346)F73.CB) [> 4.1347 = 6.8912 < 8.9585] w=0.3176 to align # Constraint # added constraint: constraint((T0346)E41.CB, (T0346)C53.CB) [> 4.1877 = 6.9794 < 9.0733] w=0.3044 to align # Constraint # added constraint: constraint((T0346)L52.CB, (T0346)E82.CB) [> 4.2532 = 7.0886 < 9.2152] w=0.3036 to align # Constraint # added constraint: constraint((T0346)S1.CB, (T0346)D25.CB) [> 3.7305 = 6.2175 < 8.0827] w=0.3020 to align # Constraint # added constraint: constraint((T0346)F6.CB, (T0346)M19.CB) [> 4.6865 = 7.8109 < 10.1542] w=0.2890 to align # Constraint # added constraint: constraint((T0346)E13.CB, (T0346)V163.CB) [> 3.8528 = 6.4213 < 8.3477] w=0.2773 to align # Constraint # added constraint: constraint((T0346)E9.CB, (T0346)M19.CB) [> 4.4003 = 7.3338 < 9.5339] w=0.2628 to align # Constraint # added constraint: constraint((T0346)I10.CB, (T0346)M19.CB) [> 3.1909 = 5.3182 < 6.9137] w=0.2628 to align # Constraint # added constraint: constraint((T0346)N11.CB, (T0346)F20.CB) [> 4.0495 = 6.7492 < 8.7740] w=0.2628 to align # Constraint # added constraint: constraint((T0346)N11.CB, (T0346)V165.CB) [> 3.5622 = 5.9371 < 7.7182] w=0.2628 to align # Constraint # added constraint: constraint((T0346)M106.CB, (T0346)V134.CB) [> 4.6336 = 7.7227 < 10.0395] w=0.2617 to align # Constraint # added constraint: constraint((T0346)F20.CB, (T0346)F34.CB) [> 4.7269 = 7.8781 < 10.2416] w=0.2602 to align # Constraint # added constraint: constraint((T0346)M106.CB, (T0346)F119.CB) [> 4.4935 = 7.4891 < 9.7358] w=0.2210 to align # Constraint # added constraint: constraint((T0346)I8.CB, (T0346)Q21.CB) [> 3.5968 = 5.9947 < 7.7931] w=0.2194 to align # Constraint # added constraint: constraint((T0346)C36.CB, (T0346)C53.CB) [> 4.5566 = 7.5943 < 9.8726] w=0.2162 to align # Constraint # added constraint: constraint((T0346)L44.CB, (T0346)S74.CB) [> 4.5179 = 7.5298 < 9.7888] w=0.2015 to align # Constraint # added constraint: constraint((T0346)S57.CB, (T0346)S74.CB) [> 3.7882 = 6.3136 < 8.2077] w=0.1918 to align # Constraint # added constraint: constraint((T0346)D99.CB, (T0346)T121.CB) [> 3.7062 = 6.1770 < 8.0301] w=0.1918 to align # Constraint # added constraint: constraint((T0346)Y88.CB, (T0346)R109.CB) [> 4.6701 = 7.7835 < 10.1186] w=0.1908 to align # Constraint # added constraint: constraint((T0346)L52.CB, (T0346)S116.CB) [> 4.5651 = 7.6085 < 9.8911] w=0.1735 to align # Constraint # added constraint: constraint((T0346)F34.CB, (T0346)G136.CA) [> 4.6919 = 7.8198 < 10.1658] w=0.1735 to align # Constraint # added constraint: constraint((T0346)F102.CB, (T0346)I139.CB) [> 4.6582 = 7.7638 < 10.0929] w=0.1735 to align # Constraint # added constraint: constraint((T0346)K42.CB, (T0346)L52.CB) [> 3.0157 = 5.0261 < 6.5340] w=0.1590 to align # Constraint # added constraint: constraint((T0346)Q3.CB, (T0346)A172.CB) [> 3.0478 = 5.0797 < 6.6037] w=0.1586 to align # Constraint # added constraint: constraint((T0346)G56.CA, (T0346)S74.CB) [> 3.8719 = 6.4532 < 8.3892] w=0.1485 to align # Constraint # added constraint: constraint((T0346)D7.CB, (T0346)L22.CB) [> 3.3123 = 5.5204 < 7.1766] w=0.1446 to align # Constraint # added constraint: constraint((T0346)D7.CB, (T0346)S24.CB) [> 3.4476 = 5.7459 < 7.4697] w=0.1446 to align # Constraint # added constraint: constraint((T0346)T58.CB, (T0346)E75.CB) [> 3.4302 = 5.7169 < 7.4320] w=0.1327 to align # Constraint # added constraint: constraint((T0346)K50.CB, (T0346)S74.CB) [> 2.9126 = 4.8544 < 6.3107] w=0.1301 to align # Constraint # added constraint: constraint((T0346)K51.CB, (T0346)F73.CB) [> 4.2762 = 7.1270 < 9.2650] w=0.1301 to align # Constraint # added constraint: constraint((T0346)L52.CB, (T0346)I84.CB) [> 3.3776 = 5.6294 < 7.3182] w=0.1301 to align # Constraint # added constraint: constraint((T0346)V63.CB, (T0346)T122.CB) [> 4.5647 = 7.6078 < 9.8902] w=0.1301 to align # Constraint # added constraint: constraint((T0346)Y88.CB, (T0346)N108.CB) [> 4.7500 = 7.9167 < 10.2917] w=0.1298 to align # Constraint # added constraint: constraint((T0346)G87.CA, (T0346)T113.CB) [> 3.7361 = 6.2268 < 8.0948] w=0.1198 to align # Constraint # added constraint: constraint((T0346)I10.CB, (T0346)L171.CB) [> 3.7668 = 6.2781 < 8.1615] w=0.1185 to align # Constraint # added constraint: constraint((T0346)G87.CA, (T0346)N114.CB) [> 3.5357 = 5.8928 < 7.6607] w=0.1170 to align # Constraint # added constraint: constraint((T0346)S74.CB, (T0346)S116.CB) [> 4.1782 = 6.9637 < 9.0529] w=0.1157 to align # Constraint # added constraint: constraint((T0346)I10.CB, (T0346)D167.CB) [> 4.6217 = 7.7028 < 10.0137] w=0.1038 to align # Constraint # added constraint: constraint((T0346)G56.CA, (T0346)E75.CB) [> 4.1888 = 6.9813 < 9.0757] w=0.1038 to align # Constraint # added constraint: constraint((T0346)C53.CB, (T0346)S116.CB) [> 3.9312 = 6.5520 < 8.5176] w=0.1025 to align # Constraint # added constraint: constraint((T0346)P28.CB, (T0346)D91.CB) [> 4.4934 = 7.4890 < 9.7357] w=0.1010 to align # Constraint # added constraint: constraint((T0346)V63.CB, (T0346)K152.CB) [> 3.2774 = 5.4623 < 7.1010] w=0.1007 to align # Constraint # added constraint: constraint((T0346)R17.CB, (T0346)D167.CB) [> 4.7208 = 7.8680 < 10.2284] w=0.0911 to align # Constraint # added constraint: constraint((T0346)G86.CA, (T0346)S116.CB) [> 4.3912 = 7.3187 < 9.5143] w=0.0908 to align # Constraint # added constraint: constraint((T0346)T58.CB, (T0346)F73.CB) [> 3.4122 = 5.6871 < 7.3932] w=0.0906 to align # Constraint # added constraint: constraint((T0346)T58.CB, (T0346)S74.CB) [> 4.2268 = 7.0447 < 9.1581] w=0.0906 to align # Constraint # added constraint: constraint((T0346)N93.CB, (T0346)H132.CB) [> 3.5668 = 5.9446 < 7.7280] w=0.0893 to align # Constraint # added constraint: constraint((T0346)L44.CB, (T0346)S57.CB) [> 4.5925 = 7.6541 < 9.9504] w=0.0880 to align # Constraint # added constraint: constraint((T0346)I95.CB, (T0346)V133.CB) [> 3.9170 = 6.5284 < 8.4869] w=0.0879 to align # Constraint # added constraint: constraint((T0346)F94.CB, (T0346)H132.CB) [> 4.7796 = 7.9660 < 10.3559] w=0.0867 to align # Constraint # added constraint: constraint((T0346)Y54.CB, (T0346)G70.CA) [> 4.6609 = 7.7682 < 10.0987] w=0.0867 to align # Constraint # added constraint: constraint((T0346)G56.CA, (T0346)D167.CB) [> 4.7676 = 7.9460 < 10.3299] w=0.0867 to align # Constraint # added constraint: constraint((T0346)F23.CB, (T0346)K97.CB) [> 4.1135 = 6.8559 < 8.9127] w=0.0864 to align # Constraint # added constraint: constraint((T0346)N93.CB, (T0346)K111.CB) [> 4.4416 = 7.4026 < 9.6234] w=0.0864 to align # Constraint # added constraint: constraint((T0346)D99.CB, (T0346)L128.CB) [> 2.6285 = 4.3808 < 5.6951] w=0.0864 to align # Constraint # added constraint: constraint((T0346)F59.CB, (T0346)D162.CB) [> 4.0330 = 6.7216 < 8.7381] w=0.0863 to align # Constraint # added constraint: constraint((T0346)D7.CB, (T0346)I18.CB) [> 4.6549 = 7.7582 < 10.0856] w=0.0737 to align # Constraint # added constraint: constraint((T0346)F6.CB, (T0346)V170.CB) [> 3.1376 = 5.2293 < 6.7981] w=0.0723 to align # Constraint # added constraint: constraint((T0346)K90.CB, (T0346)N108.CB) [> 4.3440 = 7.2400 < 9.4120] w=0.0723 to align # Constraint # added constraint: constraint((T0346)H60.CB, (T0346)E75.CB) [> 3.1608 = 5.2680 < 6.8484] w=0.0723 to align # Constraint # added constraint: constraint((T0346)I95.CB, (T0346)F135.CB) [> 4.6971 = 7.8285 < 10.1771] w=0.0619 to align # Constraint # added constraint: constraint((T0346)R100.CB, (T0346)T122.CB) [> 3.7458 = 6.2429 < 8.1158] w=0.0591 to align # Constraint # added constraint: constraint((T0346)R61.CB, (T0346)N77.CB) [> 3.7083 = 6.1805 < 8.0347] w=0.0578 to align # Constraint # added constraint: constraint((T0346)F20.CB, (T0346)I120.CB) [> 4.4769 = 7.4614 < 9.6998] w=0.0477 to align # Constraint # added constraint: constraint((T0346)Y54.CB, (T0346)D167.CB) [> 4.4517 = 7.4195 < 9.6453] w=0.0477 to align # Constraint # added constraint: constraint((T0346)A107.CB, (T0346)V133.CB) [> 4.5842 = 7.6403 < 9.9324] w=0.0477 to align # Constraint # added constraint: constraint((T0346)L96.CB, (T0346)S105.CB) [> 4.6694 = 7.7824 < 10.1172] w=0.0463 to align # Constraint # added constraint: constraint((T0346)K42.CB, (T0346)G56.CA) [> 2.8518 = 4.7530 < 6.1789] w=0.0448 to align # Constraint # added constraint: constraint((T0346)F20.CB, (T0346)L103.CB) [> 3.5802 = 5.9669 < 7.7570] w=0.0447 to align # Constraint # added constraint: constraint((T0346)T30.CB, (T0346)S105.CB) [> 3.5761 = 5.9602 < 7.7482] w=0.0447 to align # Constraint # added constraint: constraint((T0346)E92.CB, (T0346)V131.CB) [> 2.8007 = 4.6679 < 6.0682] w=0.0447 to align # Constraint # added constraint: constraint((T0346)F102.CB, (T0346)V134.CB) [> 3.0128 = 5.0213 < 6.5277] w=0.0447 to align # Constraint # added constraint: constraint((T0346)F102.CB, (T0346)G136.CA) [> 3.7157 = 6.1928 < 8.0506] w=0.0447 to align # Constraint # added constraint: constraint((T0346)L103.CB, (T0346)F118.CB) [> 3.3765 = 5.6274 < 7.3157] w=0.0447 to align # Constraint # added constraint: constraint((T0346)L103.CB, (T0346)F119.CB) [> 4.3750 = 7.2916 < 9.4791] w=0.0447 to align # Constraint # added constraint: constraint((T0346)L103.CB, (T0346)F135.CB) [> 3.7833 = 6.3054 < 8.1971] w=0.0447 to align # Constraint # added constraint: constraint((T0346)D7.CB, (T0346)F23.CB) [> 4.5875 = 7.6459 < 9.9396] w=0.0434 to align # Constraint # added constraint: constraint((T0346)H60.CB, (T0346)V163.CB) [> 4.7964 = 7.9939 < 10.3921] w=0.0434 to align # Constraint # added constraint: constraint((T0346)I120.CB, (T0346)I148.CB) [> 4.7760 = 7.9600 < 10.3480] w=0.0434 to align # Constraint # added constraint: constraint((T0346)L103.CB, (T0346)P124.CB) [> 4.7917 = 7.9861 < 10.3820] w=0.0434 to align # Constraint # added constraint: constraint((T0346)I95.CB, (T0346)G130.CA) [> 4.7359 = 7.8932 < 10.2612] w=0.0434 to align # Constraint # added constraint: constraint((T0346)R61.CB, (T0346)G71.CA) [> 4.7057 = 7.8428 < 10.1957] w=0.0434 to align # Constraint # added constraint: constraint((T0346)D72.CB, (T0346)G115.CA) [> 4.6371 = 7.7285 < 10.0471] w=0.0434 to align # Constraint # added constraint: constraint((T0346)D72.CB, (T0346)F118.CB) [> 4.4150 = 7.3583 < 9.5658] w=0.0434 to align # Constraint # added constraint: constraint((T0346)Q69.CB, (T0346)M106.CB) [> 3.5001 = 5.8336 < 7.5837] w=0.0432 to align # Constraint # added constraint: constraint((T0346)G70.CA, (T0346)M106.CB) [> 4.6106 = 7.6843 < 9.9896] w=0.0432 to align # Constraint # added constraint: constraint((T0346)K90.CB, (T0346)A107.CB) [> 4.2655 = 7.1091 < 9.2419] w=0.0432 to align # Constraint # added constraint: constraint((T0346)V62.CB, (T0346)D162.CB) [> 4.7064 = 7.8440 < 10.1972] w=0.0429 to align # Constraint # added constraint: constraint((T0346)H60.CB, (T0346)D162.CB) [> 3.0951 = 5.1585 < 6.7061] w=0.0429 to align # Constraint # added constraint: constraint((T0346)N93.CB, (T0346)S105.CB) [> 4.7666 = 7.9443 < 10.3276] w=0.0318 to align # Constraint # added constraint: constraint((T0346)N33.CB, (T0346)G87.CA) [> 4.7053 = 7.8422 < 10.1948] w=0.0317 to align # Constraint # added constraint: constraint((T0346)A101.CB, (T0346)I120.CB) [> 4.6560 = 7.7599 < 10.0879] w=0.0289 to align # Constraint # added constraint: constraint((T0346)D7.CB, (T0346)C31.CB) [> 3.6708 = 6.1180 < 7.9534] w=0.0289 to align # Constraint # added constraint: constraint((T0346)L44.CB, (T0346)C53.CB) [> 3.7423 = 6.2372 < 8.1083] w=0.0289 to align # Constraint # added constraint: constraint((T0346)F6.CB, (T0346)A172.CB) [> 3.5978 = 5.9964 < 7.7953] w=0.0289 to align # Constraint # added constraint: constraint((T0346)E9.CB, (T0346)D167.CB) [> 2.5926 = 4.3211 < 5.6174] w=0.0289 to align # Constraint # added constraint: constraint((T0346)K79.CB, (T0346)R158.CB) [> 4.0848 = 6.8079 < 8.8503] w=0.0145 to align # Constraint # added constraint: constraint((T0346)D72.CB, (T0346)I84.CB) [> 4.6565 = 7.7608 < 10.0891] w=0.0145 to align # Constraint # added constraint: constraint((T0346)F66.CB, (T0346)K152.CB) [> 4.7974 = 7.9957 < 10.3944] w=0.0145 to align # Constraint # added constraint: constraint((T0346)G78.CA, (T0346)R109.CB) [> 4.5234 = 7.5390 < 9.8008] w=0.0145 to align # Constraint # added constraint: constraint((T0346)F23.CB, (T0346)N93.CB) [> 4.5942 = 7.6569 < 9.9540] w=0.0145 to align # Constraint # added constraint: constraint((T0346)I68.CB, (T0346)T121.CB) [> 4.7060 = 7.8433 < 10.1962] w=0.0043 to align # Constraint # added constraint: constraint((T0346)G71.CA, (T0346)F119.CB) [> 4.6826 = 7.8043 < 10.1456] w=0.0043 to align # Constraint # added constraint: constraint((T0346)F118.CB, (T0346)V133.CB) [> 3.9195 = 6.5325 < 8.4923] w=0.0043 to align # Constraint # added constraint: constraint((T0346)F119.CB, (T0346)V133.CB) [> 4.7792 = 7.9653 < 10.3549] w=0.0043 to align # Constraint # added constraint: constraint((T0346)Q21.CB, (T0346)L104.CB) [> 4.5536 = 7.5894 < 9.8662] w=0.0029 to align # Constraint # added constraint: constraint((T0346)N93.CB, (T0346)M106.CB) [> 4.7829 = 7.9714 < 10.3629] w=0.0029 to align # Constraint # added constraint: constraint((T0346)D99.CB, (T0346)K123.CB) [> 4.7983 = 7.9972 < 10.3963] w=0.0014 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0346/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0346/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 13 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 Skipped atom 103, because occupancy 1 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 44 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0346)Y160.O and (T0346)A161.N only 0.000 apart, marking (T0346)A161.N as missing WARNING: atoms too close: (T0346)C168.O and (T0346)G169.N only 0.000 apart, marking (T0346)G169.N as missing # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0346 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 259 model score -0.7722 model score -0.7734 model score -0.7871 model score -0.7886 model score -0.7433 model score -0.8232 model score -0.8046 model score -0.8255 model score -0.8003 model score -0.7899 model score -0.7981 model score -0.8232 model score -0.8076 model score -0.7957 model score -0.7426 model score -0.8285 model score -0.8269 model score -0.7483 model score -0.7387 model score -0.7566 model score 1.6317 model score 1.8308 model score 1.6449 model score 1.7448 model score 1.9208 model score -0.8216 model score -0.7773 model score -0.7760 model score -0.8038 model score -0.7919 model score -0.7779 model score -0.7447 model score -0.7596 model score -0.7732 model score -0.7509 model score -0.7791 model score -0.7019 model score -0.7998 model score -0.6759 model score -0.8128 model score -0.7075 model score -0.7319 model score 1.2697 model score 1.2693 model score 1.2679 model score 1.2695 model score 1.2683 model score -0.7829 model score -0.7565 model score -0.7488 model score -0.7369 model score -0.7618 model score -0.7770 model score -0.7732 model score -0.7447 model score -0.7509 model score -0.7791 model score -0.8097 model score -0.5210 model score -0.8226 model score -0.7483 model score -0.7387 model score 1.2665 model score 1.2668 model score 1.2801 model score 1.2790 model score 1.2786 model score 1.2665 model score 1.2668 model score 1.2794 model score 1.2780 model score 1.2807 model score 2.1473 model score 2.2271 model score 2.1473 model score 2.2431 model score 2.1791 model score -0.8048 model score -0.8060 model score 1.2705 model score 2.0787 model score 1.9671 model score 1.2665 model score 1.2672 model score 1.2771 model score 1.2830 model score 1.2812 model score -0.7169 model score -0.7079 model score -0.7825 model score -0.7534 model score -0.7690 model score -0.8047 model score -0.7652 model score -0.7590 model score -0.8004 model score -0.8005 model score -0.7962 model score -0.8165 model score -0.8165 model score -0.8068 model score -0.7954 model score -0.8205 model score -0.7888 model score -0.7706 model score -0.6604 model score -0.7691 model score -0.7205 model score -0.6382 model score -0.7052 model score -0.8062 model score -0.3551 model score -0.3187 model score -0.7523 model score 2.3937 model score -0.8062 model score -0.7641 model score -0.3551 model score -0.3643 model score -0.7523 model score -0.7554 model score -0.6003 model score -0.6151 model score -0.6604 model score -0.7342 model score -0.7320 model score -0.7353 model score -0.7331 model score -0.7304 model score -0.7353 model score -0.7615 model score -0.8099 model score -0.7850 model score -0.7550 model score -0.7495 model score -0.8072 model score -0.7856 model score -0.7830 model score -0.7740 model score -0.7836 model score -0.7954 model score -0.7951 model score -0.7951 model score -0.7954 model score -0.7954 model score -0.8092 model score -0.8002 model score -0.8008 model score -0.8055 model score -0.7830 model score -0.7461 model score -0.8136 model score -0.7640 model score -0.7189 model score -0.8104 model score -0.7074 model score -0.7414 model score -0.5571 model score -0.6045 model score -0.6402 model score -0.7797 model score -0.8036 model score -0.7307 model score -0.7590 model score -0.7569 model score -0.8055 model score -0.8059 model score -0.8008 model score -0.8092 model score -0.8002 model score -0.7724 model score -0.7527 model score -0.7470 model score -0.7190 model score -0.7661 model score 1.2663 model score 1.2664 model score 1.2662 model score 1.2670 model score 1.2662 model score 1.2672 model score 1.2672 model score 1.2667 model score 1.2669 model score 1.2670 model score -0.7794 model score -0.5635 model score -0.8012 model score -0.6622 model score -0.5077 model score -0.7189 model score -0.5616 model score -0.4345 model score -0.8136 model score -0.5884 model score -0.7141 model score -0.5375 model score -0.8136 model score -0.4334 model score -0.5598 model score -0.7253 model score -0.5385 model score -0.4345 model score -0.5884 model score -0.8029 model score 1.2662 model score 1.2670 model score 1.2673 model score 1.2662 model score 1.2669 model score -0.7843 model score 1.2662 model score 1.2670 model score 1.2673 model score 1.2662 model score 1.2669 model score -0.8125 model score -0.7940 model score -0.8073 model score -0.8050 model score -0.8001 model score -0.7639 model score -0.7593 model score 1.2665 model score 1.2667 model score 1.2806 model score 1.2818 model score 1.2771 model score 1.2672 model score 1.2663 model score 1.2665 model score 1.2662 model score 1.2663 model score -0.7778 model score -0.7778 model score -0.7734 model score -0.7710 model score -0.7901 model score 1.8260 model score 2.0335 model score 1.7700 model score 2.0479 model score -0.7912 model score -0.8000 model score -0.7615 model score -0.7842 model score -0.7772 model score -0.7204 model score -0.7270 model score -0.7196 model score -0.7223 model score -0.7407 model score -0.8005 model score -0.8005 model score -0.4251 model score -0.5252 model score 2.0699 model score 2.0303 model score -0.7378 weight: 0.9843 eval: -0.7722 min: -0.8285 max: 2.3937 weight: 0.9846 eval: -0.7734 min: -0.8285 max: 2.3937 weight: 0.9884 eval: -0.7871 min: -0.8285 max: 2.3937 weight: 0.9888 eval: -0.7886 min: -0.8285 max: 2.3937 weight: 0.9762 eval: -0.7433 min: -0.8285 max: 2.3937 weight: 0.9985 eval: -0.8232 min: -0.8285 max: 2.3937 weight: 0.9933 eval: -0.8046 min: -0.8285 max: 2.3937 weight: 0.9992 eval: -0.8255 min: -0.8285 max: 2.3937 weight: 0.9921 eval: -0.8003 min: -0.8285 max: 2.3937 weight: 0.9892 eval: -0.7899 min: -0.8285 max: 2.3937 weight: 0.9915 eval: -0.7981 min: -0.8285 max: 2.3937 weight: 0.9985 eval: -0.8232 min: -0.8285 max: 2.3937 weight: 0.9941 eval: -0.8076 min: -0.8285 max: 2.3937 weight: 0.9908 eval: -0.7957 min: -0.8285 max: 2.3937 weight: 0.9760 eval: -0.7426 min: -0.8285 max: 2.3937 weight: 1.0000 eval: -0.8285 min: -0.8285 max: 2.3937 weight: 0.9995 eval: -0.8269 min: -0.8285 max: 2.3937 weight: 0.9776 eval: -0.7483 min: -0.8285 max: 2.3937 weight: 0.9749 eval: -0.7387 min: -0.8285 max: 2.3937 weight: 0.9799 eval: -0.7566 min: -0.8285 max: 2.3937 weight: 0.3129 eval: 1.6317 min: -0.8285 max: 2.3937 weight: 0.2572 eval: 1.8308 min: -0.8285 max: 2.3937 weight: 0.3092 eval: 1.6449 min: -0.8285 max: 2.3937 weight: 0.2812 eval: 1.7448 min: -0.8285 max: 2.3937 weight: 0.2321 eval: 1.9208 min: -0.8285 max: 2.3937 weight: 0.9981 eval: -0.8216 min: -0.8285 max: 2.3937 weight: 0.9857 eval: -0.7773 min: -0.8285 max: 2.3937 weight: 0.9853 eval: -0.7760 min: -0.8285 max: 2.3937 weight: 0.9931 eval: -0.8038 min: -0.8285 max: 2.3937 weight: 0.9898 eval: -0.7919 min: -0.8285 max: 2.3937 weight: 0.9859 eval: -0.7779 min: -0.8285 max: 2.3937 weight: 0.9766 eval: -0.7447 min: -0.8285 max: 2.3937 weight: 0.9807 eval: -0.7596 min: -0.8285 max: 2.3937 weight: 0.9845 eval: -0.7732 min: -0.8285 max: 2.3937 weight: 0.9783 eval: -0.7509 min: -0.8285 max: 2.3937 weight: 0.9862 eval: -0.7791 min: -0.8285 max: 2.3937 weight: 0.9646 eval: -0.7019 min: -0.8285 max: 2.3937 weight: 0.9920 eval: -0.7998 min: -0.8285 max: 2.3937 weight: 0.9574 eval: -0.6759 min: -0.8285 max: 2.3937 weight: 0.9956 eval: -0.8128 min: -0.8285 max: 2.3937 weight: 0.9662 eval: -0.7075 min: -0.8285 max: 2.3937 weight: 0.9730 eval: -0.7319 min: -0.8285 max: 2.3937 weight: 0.4140 eval: 1.2697 min: -0.8285 max: 2.3937 weight: 0.4141 eval: 1.2693 min: -0.8285 max: 2.3937 weight: 0.4144 eval: 1.2679 min: -0.8285 max: 2.3937 weight: 0.4140 eval: 1.2695 min: -0.8285 max: 2.3937 weight: 0.4143 eval: 1.2683 min: -0.8285 max: 2.3937 weight: 0.9873 eval: -0.7829 min: -0.8285 max: 2.3937 weight: 0.9799 eval: -0.7565 min: -0.8285 max: 2.3937 weight: 0.9777 eval: -0.7488 min: -0.8285 max: 2.3937 weight: 0.9744 eval: -0.7369 min: -0.8285 max: 2.3937 weight: 0.9814 eval: -0.7618 min: -0.8285 max: 2.3937 weight: 0.9856 eval: -0.7770 min: -0.8285 max: 2.3937 weight: 0.9845 eval: -0.7732 min: -0.8285 max: 2.3937 weight: 0.9766 eval: -0.7447 min: -0.8285 max: 2.3937 weight: 0.9783 eval: -0.7509 min: -0.8285 max: 2.3937 weight: 0.9862 eval: -0.7791 min: -0.8285 max: 2.3937 weight: 0.9947 eval: -0.8097 min: -0.8285 max: 2.3937 weight: 0.9141 eval: -0.5210 min: -0.8285 max: 2.3937 weight: 0.9984 eval: -0.8226 min: -0.8285 max: 2.3937 weight: 0.9776 eval: -0.7483 min: -0.8285 max: 2.3937 weight: 0.9749 eval: -0.7387 min: -0.8285 max: 2.3937 weight: 0.4148 eval: 1.2665 min: -0.8285 max: 2.3937 weight: 0.4148 eval: 1.2668 min: -0.8285 max: 2.3937 weight: 0.4111 eval: 1.2801 min: -0.8285 max: 2.3937 weight: 0.4113 eval: 1.2790 min: -0.8285 max: 2.3937 weight: 0.4115 eval: 1.2786 min: -0.8285 max: 2.3937 weight: 0.4148 eval: 1.2665 min: -0.8285 max: 2.3937 weight: 0.4148 eval: 1.2668 min: -0.8285 max: 2.3937 weight: 0.4112 eval: 1.2794 min: -0.8285 max: 2.3937 weight: 0.4116 eval: 1.2780 min: -0.8285 max: 2.3937 weight: 0.4109 eval: 1.2807 min: -0.8285 max: 2.3937 weight: 0.1688 eval: 2.1473 min: -0.8285 max: 2.3937 weight: 0.1465 eval: 2.2271 min: -0.8285 max: 2.3937 weight: 0.1688 eval: 2.1473 min: -0.8285 max: 2.3937 weight: 0.1421 eval: 2.2431 min: -0.8285 max: 2.3937 weight: 0.1599 eval: 2.1791 min: -0.8285 max: 2.3937 weight: 0.9934 eval: -0.8048 min: -0.8285 max: 2.3937 weight: 0.9937 eval: -0.8060 min: -0.8285 max: 2.3937 weight: 0.4137 eval: 1.2705 min: -0.8285 max: 2.3937 weight: 0.1880 eval: 2.0787 min: -0.8285 max: 2.3937 weight: 0.2191 eval: 1.9671 min: -0.8285 max: 2.3937 weight: 0.4148 eval: 1.2665 min: -0.8285 max: 2.3937 weight: 0.4146 eval: 1.2672 min: -0.8285 max: 2.3937 weight: 0.4119 eval: 1.2771 min: -0.8285 max: 2.3937 weight: 0.4102 eval: 1.2830 min: -0.8285 max: 2.3937 weight: 0.4107 eval: 1.2812 min: -0.8285 max: 2.3937 weight: 0.9688 eval: -0.7169 min: -0.8285 max: 2.3937 weight: 0.9663 eval: -0.7079 min: -0.8285 max: 2.3937 weight: 0.9872 eval: -0.7825 min: -0.8285 max: 2.3937 weight: 0.9790 eval: -0.7534 min: -0.8285 max: 2.3937 weight: 0.9834 eval: -0.7690 min: -0.8285 max: 2.3937 weight: 0.9933 eval: -0.8047 min: -0.8285 max: 2.3937 weight: 0.9823 eval: -0.7652 min: -0.8285 max: 2.3937 weight: 0.9806 eval: -0.7590 min: -0.8285 max: 2.3937 weight: 0.9921 eval: -0.8004 min: -0.8285 max: 2.3937 weight: 0.9922 eval: -0.8005 min: -0.8285 max: 2.3937 weight: 0.9910 eval: -0.7962 min: -0.8285 max: 2.3937 weight: 0.9966 eval: -0.8165 min: -0.8285 max: 2.3937 weight: 0.9966 eval: -0.8165 min: -0.8285 max: 2.3937 weight: 0.9939 eval: -0.8068 min: -0.8285 max: 2.3937 weight: 0.9908 eval: -0.7954 min: -0.8285 max: 2.3937 weight: 0.9978 eval: -0.8205 min: -0.8285 max: 2.3937 weight: 0.9889 eval: -0.7888 min: -0.8285 max: 2.3937 weight: 0.9838 eval: -0.7706 min: -0.8285 max: 2.3937 weight: 0.9530 eval: -0.6604 min: -0.8285 max: 2.3937 weight: 0.9834 eval: -0.7691 min: -0.8285 max: 2.3937 weight: 0.9698 eval: -0.7205 min: -0.8285 max: 2.3937 weight: 0.9468 eval: -0.6382 min: -0.8285 max: 2.3937 weight: 0.9656 eval: -0.7052 min: -0.8285 max: 2.3937 weight: 0.9938 eval: -0.8062 min: -0.8285 max: 2.3937 weight: 0.8678 eval: -0.3551 min: -0.8285 max: 2.3937 weight: 0.8576 eval: -0.3187 min: -0.8285 max: 2.3937 weight: 0.9787 eval: -0.7523 min: 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2.3937 weight: 0.9535 eval: -0.6622 min: -0.8285 max: 2.3937 weight: 0.9104 eval: -0.5077 min: -0.8285 max: 2.3937 weight: 0.9694 eval: -0.7189 min: -0.8285 max: 2.3937 weight: 0.9255 eval: -0.5616 min: -0.8285 max: 2.3937 weight: 0.8900 eval: -0.4345 min: -0.8285 max: 2.3937 weight: 0.9958 eval: -0.8136 min: -0.8285 max: 2.3937 weight: 0.9329 eval: -0.5884 min: -0.8285 max: 2.3937 weight: 0.9680 eval: -0.7141 min: -0.8285 max: 2.3937 weight: 0.9187 eval: -0.5375 min: -0.8285 max: 2.3937 weight: 0.9958 eval: -0.8136 min: -0.8285 max: 2.3937 weight: 0.8896 eval: -0.4334 min: -0.8285 max: 2.3937 weight: 0.9249 eval: -0.5598 min: -0.8285 max: 2.3937 weight: 0.9712 eval: -0.7253 min: -0.8285 max: 2.3937 weight: 0.9190 eval: -0.5385 min: -0.8285 max: 2.3937 weight: 0.8900 eval: -0.4345 min: -0.8285 max: 2.3937 weight: 0.9329 eval: -0.5884 min: -0.8285 max: 2.3937 weight: 0.9928 eval: -0.8029 min: -0.8285 max: 2.3937 weight: 0.4149 eval: 1.2662 min: -0.8285 max: 2.3937 weight: 0.4147 eval: 1.2670 min: -0.8285 max: 2.3937 weight: 0.4146 eval: 1.2673 min: -0.8285 max: 2.3937 weight: 0.4149 eval: 1.2662 min: -0.8285 max: 2.3937 weight: 0.4147 eval: 1.2669 min: -0.8285 max: 2.3937 weight: 0.9876 eval: -0.7843 min: -0.8285 max: 2.3937 weight: 0.4149 eval: 1.2662 min: -0.8285 max: 2.3937 weight: 0.4147 eval: 1.2670 min: -0.8285 max: 2.3937 weight: 0.4146 eval: 1.2673 min: -0.8285 max: 2.3937 weight: 0.4149 eval: 1.2662 min: -0.8285 max: 2.3937 weight: 0.4147 eval: 1.2669 min: -0.8285 max: 2.3937 weight: 0.9955 eval: -0.8125 min: -0.8285 max: 2.3937 weight: 0.9904 eval: -0.7940 min: -0.8285 max: 2.3937 weight: 0.9941 eval: -0.8073 min: -0.8285 max: 2.3937 weight: 0.9934 eval: -0.8050 min: -0.8285 max: 2.3937 weight: 0.9921 eval: -0.8001 min: -0.8285 max: 2.3937 weight: 0.9820 eval: -0.7639 min: -0.8285 max: 2.3937 weight: 0.9807 eval: -0.7593 min: -0.8285 max: 2.3937 weight: 0.4148 eval: 1.2665 min: -0.8285 max: 2.3937 weight: 0.4148 eval: 1.2667 min: -0.8285 max: 2.3937 weight: 0.4109 eval: 1.2806 min: -0.8285 max: 2.3937 weight: 0.4106 eval: 1.2818 min: -0.8285 max: 2.3937 weight: 0.4119 eval: 1.2771 min: -0.8285 max: 2.3937 weight: 0.4146 eval: 1.2672 min: -0.8285 max: 2.3937 weight: 0.4149 eval: 1.2663 min: -0.8285 max: 2.3937 weight: 0.4149 eval: 1.2665 min: -0.8285 max: 2.3937 weight: 0.4149 eval: 1.2662 min: -0.8285 max: 2.3937 weight: 0.4149 eval: 1.2663 min: -0.8285 max: 2.3937 weight: 0.9858 eval: -0.7778 min: -0.8285 max: 2.3937 weight: 0.9858 eval: -0.7778 min: -0.8285 max: 2.3937 weight: 0.9846 eval: -0.7734 min: -0.8285 max: 2.3937 weight: 0.9839 eval: -0.7710 min: -0.8285 max: 2.3937 weight: 0.9893 eval: -0.7901 min: -0.8285 max: 2.3937 weight: 0.2586 eval: 1.8260 min: -0.8285 max: 2.3937 weight: 0.2006 eval: 2.0335 min: -0.8285 max: 2.3937 weight: 0.2742 eval: 1.7700 min: -0.8285 max: 2.3937 weight: 0.1966 eval: 2.0479 min: -0.8285 max: 2.3937 weight: 0.9896 eval: -0.7912 min: -0.8285 max: 2.3937 weight: 0.9920 eval: -0.8000 min: -0.8285 max: 2.3937 weight: 0.9813 eval: -0.7615 min: -0.8285 max: 2.3937 weight: 0.9876 eval: -0.7842 min: -0.8285 max: 2.3937 weight: 0.9857 eval: -0.7772 min: -0.8285 max: 2.3937 weight: 0.9698 eval: -0.7204 min: -0.8285 max: 2.3937 weight: 0.9717 eval: -0.7270 min: -0.8285 max: 2.3937 weight: 0.9696 eval: -0.7196 min: -0.8285 max: 2.3937 weight: 0.9703 eval: -0.7223 min: -0.8285 max: 2.3937 weight: 0.9755 eval: -0.7407 min: -0.8285 max: 2.3937 weight: 0.9922 eval: -0.8005 min: -0.8285 max: 2.3937 weight: 0.9922 eval: -0.8005 min: -0.8285 max: 2.3937 weight: 0.8873 eval: -0.4251 min: -0.8285 max: 2.3937 weight: 0.9153 eval: -0.5252 min: -0.8285 max: 2.3937 weight: 0.1904 eval: 2.0699 min: -0.8285 max: 2.3937 weight: 0.2015 eval: 2.0303 min: -0.8285 max: 2.3937 weight: 0.9747 eval: -0.7378 min: -0.8285 max: 2.3937 Adding 4495 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -323.9150, CN propb: -323.9150 weights: 0.5625 constraints: 486 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 486 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 486 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 4009 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 4009 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 4495 # command: