# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0342/ # command:# Making conformation for sequence T0342 numbered 1 through 188 Created new target T0342 from T0342.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0342/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0342//projects/compbio/experiments/protein-predict/casp7/T0342/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0342//projects/compbio/experiments/protein-predict/casp7/T0342/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0342/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0342/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0342)E109.CB, (T0342)C122.CB) [> 4.2820 = 7.1367 < 9.2778] w=1.0000 to align # Constraint # added constraint: constraint((T0342)V110.CB, (T0342)C122.CB) [> 3.3321 = 5.5535 < 7.2195] w=0.9910 to align # Constraint # added constraint: constraint((T0342)V107.CB, (T0342)S124.CB) [> 4.2008 = 7.0014 < 9.1018] w=0.9867 to align # Constraint # added constraint: constraint((T0342)K111.CB, (T0342)I120.CB) [> 4.2137 = 7.0229 < 9.1297] w=0.9635 to align # Constraint # added constraint: constraint((T0342)I108.CB, (T0342)S124.CB) [> 3.2004 = 5.3339 < 6.9341] w=0.9622 to align # Constraint # added constraint: constraint((T0342)K111.CB, (T0342)T121.CB) [> 3.6549 = 6.0915 < 7.9189] w=0.9598 to align # Constraint # added constraint: constraint((T0342)V107.CB, (T0342)Y125.CB) [> 3.4238 = 5.7063 < 7.4181] w=0.9596 to align # Constraint # added constraint: constraint((T0342)E109.CB, (T0342)R123.CB) [> 3.5437 = 5.9061 < 7.6780] w=0.9408 to align # Constraint # added constraint: constraint((T0342)Y105.CB, (T0342)M127.CB) [> 3.2823 = 5.4705 < 7.1117] w=0.9265 to align # Constraint # added constraint: constraint((T0342)V112.CB, (T0342)T121.CB) [> 4.1599 = 6.9331 < 9.0131] w=0.8948 to align # Constraint # added constraint: constraint((T0342)I108.CB, (T0342)R123.CB) [> 4.1983 = 6.9971 < 9.0963] w=0.8906 to align # Constraint # added constraint: constraint((T0342)V110.CB, (T0342)S124.CB) [> 3.6161 = 6.0268 < 7.8348] w=0.8738 to align # Constraint # added constraint: constraint((T0342)V110.CB, (T0342)R123.CB) [> 4.1483 = 6.9138 < 8.9880] w=0.8676 to align # Constraint # added constraint: constraint((T0342)V106.CB, (T0342)L126.CB) [> 3.2028 = 5.3380 < 6.9394] w=0.8650 to align # Constraint # added constraint: constraint((T0342)E109.CB, (T0342)T121.CB) [> 3.7496 = 6.2493 < 8.1241] w=0.8581 to align # Constraint # added constraint: constraint((T0342)V106.CB, (T0342)Y125.CB) [> 4.3091 = 7.1818 < 9.3364] w=0.8483 to align # Constraint # added constraint: constraint((T0342)Y105.CB, (T0342)L126.CB) [> 3.7249 = 6.2082 < 8.0707] w=0.8473 to align # Constraint # added constraint: constraint((T0342)K111.CB, (T0342)C122.CB) [> 4.2882 = 7.1469 < 9.2910] w=0.8436 to align # Constraint # added constraint: constraint((T0342)V107.CB, (T0342)L126.CB) [> 4.3348 = 7.2247 < 9.3921] w=0.8404 to align # Constraint # added constraint: constraint((T0342)V107.CB, (T0342)R123.CB) [> 3.6005 = 6.0008 < 7.8010] w=0.8366 to align # Constraint # added constraint: constraint((T0342)V110.CB, (T0342)T121.CB) [> 4.1427 = 6.9044 < 8.9758] w=0.8278 to align # Constraint # added constraint: constraint((T0342)V112.CB, (T0342)C122.CB) [> 3.4400 = 5.7334 < 7.4534] w=0.8231 to align # Constraint # added constraint: constraint((T0342)I108.CB, (T0342)Y125.CB) [> 4.2176 = 7.0293 < 9.1382] w=0.7642 to align # Constraint # added constraint: constraint((T0342)Y105.CB, (T0342)Y125.CB) [> 3.1900 = 5.3167 < 6.9117] w=0.7486 to align # Constraint # added constraint: constraint((T0342)E109.CB, (T0342)S124.CB) [> 4.1199 = 6.8664 < 8.9264] w=0.7262 to align # Constraint # added constraint: constraint((T0342)M104.CB, (T0342)M127.CB) [> 4.0144 = 6.6906 < 8.6978] w=0.7211 to align # Constraint # added constraint: constraint((T0342)I108.CB, (T0342)L126.CB) [> 3.6806 = 6.1343 < 7.9746] w=0.6662 to align # Constraint # added constraint: constraint((T0342)Y105.CB, (T0342)T128.CB) [> 3.6299 = 6.0498 < 7.8647] w=0.6221 to align # Constraint # added constraint: constraint((T0342)V106.CB, (T0342)T128.CB) [> 3.6560 = 6.0934 < 7.9214] w=0.5916 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)T70.CB) [> 4.0867 = 6.8111 < 8.8545] w=0.5661 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)I71.CB) [> 3.9975 = 6.6625 < 8.6613] w=0.5661 to align # Constraint # added constraint: constraint((T0342)M104.CB, (T0342)T128.CB) [> 4.0925 = 6.8208 < 8.8671] w=0.5422 to align # Constraint # added constraint: constraint((T0342)F49.CB, (T0342)I71.CB) [> 3.2734 = 5.4557 < 7.0925] w=0.5377 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)A69.CB) [> 3.4883 = 5.8139 < 7.5581] w=0.5187 to align # Constraint # added constraint: constraint((T0342)M104.CB, (T0342)N129.CB) [> 3.3052 = 5.5086 < 7.1612] w=0.5176 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)A69.CB) [> 3.8110 = 6.3516 < 8.2571] w=0.5079 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)A69.CB) [> 3.8456 = 6.4094 < 8.3322] w=0.4990 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)T70.CB) [> 3.5246 = 5.8744 < 7.6367] w=0.4946 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)I71.CB) [> 3.6648 = 6.1080 < 7.9404] w=0.4865 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)G81.CA) [> 3.9576 = 6.5960 < 8.5748] w=0.4667 to align # Constraint # added constraint: constraint((T0342)F49.CB, (T0342)S74.CB) [> 3.6176 = 6.0293 < 7.8381] w=0.4602 to align # Constraint # added constraint: constraint((T0342)F49.CB, (T0342)F72.CB) [> 3.7922 = 6.3204 < 8.2165] w=0.4542 to align # Constraint # added constraint: constraint((T0342)Y105.CB, (T0342)N129.CB) [> 4.3499 = 7.2498 < 9.4247] w=0.4389 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)S124.CB) [> 3.9778 = 6.6297 < 8.6186] w=0.4141 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)L126.CB) [> 3.5712 = 5.9519 < 7.7375] w=0.4138 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)D52.CB) [> 3.2940 = 5.4899 < 7.1369] w=0.4019 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)F53.CB) [> 4.2848 = 7.1414 < 9.2838] w=0.4016 to align # Constraint # added constraint: constraint((T0342)G103.CA, (T0342)T128.CB) [> 4.1143 = 6.8572 < 8.9144] w=0.4003 to align # Constraint # added constraint: constraint((T0342)V106.CB, (T0342)M127.CB) [> 3.5002 = 5.8337 < 7.5838] w=0.3977 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)D52.CB) [> 4.1852 = 6.9754 < 9.0680] w=0.3863 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)A44.CB) [> 3.5806 = 5.9677 < 7.7581] w=0.3859 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)I68.CB) [> 3.7184 = 6.1973 < 8.0565] w=0.3822 to align # Constraint # added constraint: constraint((T0342)D95.CB, (T0342)V107.CB) [> 3.5062 = 5.8436 < 7.5967] w=0.3807 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)S74.CB) [> 2.9568 = 4.9280 < 6.4064] w=0.3749 to align # Constraint # added constraint: constraint((T0342)F49.CB, (T0342)Q73.CB) [> 3.6859 = 6.1432 < 7.9862] w=0.3745 to align # Constraint # added constraint: constraint((T0342)F17.CB, (T0342)K85.CB) [> 4.4220 = 7.3700 < 9.5810] w=0.3742 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)V83.CB) [> 3.5032 = 5.8386 < 7.5902] w=0.3742 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)W84.CB) [> 3.5001 = 5.8335 < 7.5836] w=0.3742 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)K85.CB) [> 3.4495 = 5.7492 < 7.4740] w=0.3742 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)V83.CB) [> 3.6656 = 6.1094 < 7.9422] w=0.3742 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)G81.CA) [> 3.7562 = 6.2603 < 8.1384] w=0.3742 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)V82.CB) [> 3.7501 = 6.2501 < 8.1251] w=0.3742 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)R123.CB) [> 4.0886 = 6.8144 < 8.8587] w=0.3742 to align # Constraint # added constraint: constraint((T0342)A21.CB, (T0342)G81.CA) [> 3.5542 = 5.9237 < 7.7008] w=0.3742 to align # Constraint # added constraint: constraint((T0342)A21.CB, (T0342)V82.CB) [> 3.7417 = 6.2361 < 8.1069] w=0.3742 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)A69.CB) [> 3.8144 = 6.3573 < 8.2645] w=0.3742 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)I71.CB) [> 3.2696 = 5.4493 < 7.0841] w=0.3742 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)V79.CB) [> 3.4513 = 5.7522 < 7.4779] w=0.3742 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)G81.CA) [> 3.6495 = 6.0824 < 7.9072] w=0.3742 to align # Constraint # added constraint: constraint((T0342)D48.CB, (T0342)P75.CB) [> 3.8274 = 6.3791 < 8.2928] w=0.3710 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)M127.CB) [> 2.9291 = 4.8819 < 6.3464] w=0.3675 to align # Constraint # added constraint: constraint((T0342)A39.CB, (T0342)M86.CB) [> 4.0315 = 6.7191 < 8.7348] w=0.3674 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)F53.CB) [> 4.1750 = 6.9583 < 9.0458] w=0.3594 to align # Constraint # added constraint: constraint((T0342)M127.CB, (T0342)Y139.CB) [> 3.6479 = 6.0798 < 7.9038] w=0.3581 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)I68.CB) [> 4.2582 = 7.0969 < 9.2260] w=0.3566 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)I71.CB) [> 4.0453 = 6.7421 < 8.7648] w=0.3488 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)Q115.CB) [> 4.2385 = 7.0642 < 9.1835] w=0.3458 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)V79.CB) [> 2.9412 = 4.9020 < 6.3726] w=0.3420 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)M127.CB) [> 3.6633 = 6.1055 < 7.9372] w=0.3411 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)F72.CB) [> 3.3298 = 5.5496 < 7.2144] w=0.3410 to align # Constraint # added constraint: constraint((T0342)M104.CB, (T0342)Y139.CB) [> 4.1152 = 6.8587 < 8.9164] w=0.3410 to align # Constraint # added constraint: constraint((T0342)T28.CB, (T0342)F41.CB) [> 3.8471 = 6.4118 < 8.3354] w=0.3399 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)A69.CB) [> 3.6292 = 6.0487 < 7.8633] w=0.3374 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)T70.CB) [> 3.9313 = 6.5522 < 8.5179] w=0.3337 to align # Constraint # added constraint: constraint((T0342)F49.CB, (T0342)V79.CB) [> 3.0037 = 5.0062 < 6.5081] w=0.3336 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)F53.CB) [> 3.4603 = 5.7671 < 7.4972] w=0.3331 to align # Constraint # added constraint: constraint((T0342)Y125.CB, (T0342)I142.CB) [> 4.2032 = 7.0054 < 9.1070] w=0.3287 to align # Constraint # added constraint: constraint((T0342)L91.CB, (T0342)R123.CB) [> 4.2994 = 7.1657 < 9.3154] w=0.3251 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)Y125.CB) [> 4.2705 = 7.1175 < 9.2528] w=0.3207 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)V79.CB) [> 3.1286 = 5.2143 < 6.7786] w=0.3199 to align # Constraint # added constraint: constraint((T0342)R45.CB, (T0342)V79.CB) [> 3.9321 = 6.5535 < 8.5196] w=0.3167 to align # Constraint # added constraint: constraint((T0342)R45.CB, (T0342)E78.CB) [> 2.8949 = 4.8249 < 6.2724] w=0.3167 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)W80.CB) [> 4.0459 = 6.7432 < 8.7661] w=0.3167 to align # Constraint # added constraint: constraint((T0342)E98.CB, (T0342)V107.CB) [> 3.8109 = 6.3515 < 8.2570] w=0.3166 to align # Constraint # added constraint: constraint((T0342)F72.CB, (T0342)L126.CB) [> 4.1602 = 6.9337 < 9.0138] w=0.3151 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)V82.CB) [> 4.0345 = 6.7242 < 8.7415] w=0.3142 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)G81.CA) [> 3.5700 = 5.9500 < 7.7350] w=0.3142 to align # Constraint # added constraint: constraint((T0342)R45.CB, (T0342)W80.CB) [> 3.2914 = 5.4857 < 7.1314] w=0.3142 to align # Constraint # added constraint: constraint((T0342)R45.CB, (T0342)G81.CA) [> 4.1969 = 6.9949 < 9.0934] w=0.3142 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)L51.CB) [> 3.7714 = 6.2857 < 8.1714] w=0.3113 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)Q73.CB) [> 4.5408 = 7.5679 < 9.8383] w=0.3066 to align # Constraint # added constraint: constraint((T0342)V83.CB, (T0342)I108.CB) [> 3.2691 = 5.4485 < 7.0831] w=0.3061 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)D52.CB) [> 3.7952 = 6.3253 < 8.2229] w=0.3042 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)S124.CB) [> 4.2508 = 7.0847 < 9.2101] w=0.3015 to align # Constraint # added constraint: constraint((T0342)M104.CB, (T0342)I142.CB) [> 3.9580 = 6.5967 < 8.5757] w=0.2946 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)E78.CB) [> 3.5684 = 5.9473 < 7.7315] w=0.2921 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)V83.CB) [> 3.4855 = 5.8092 < 7.5520] w=0.2912 to align # Constraint # added constraint: constraint((T0342)N25.CB, (T0342)L94.CB) [> 4.3656 = 7.2760 < 9.4588] w=0.2889 to align # Constraint # added constraint: constraint((T0342)G23.CA, (T0342)A69.CB) [> 2.4841 = 4.1402 < 5.3822] w=0.2889 to align # Constraint # added constraint: constraint((T0342)A21.CB, (T0342)S124.CB) [> 4.5034 = 7.5057 < 9.7574] w=0.2889 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)C122.CB) [> 2.6922 = 4.4869 < 5.8330] w=0.2889 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)L46.CB) [> 3.9868 = 6.6447 < 8.6381] w=0.2889 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)R123.CB) [> 3.0494 = 5.0824 < 6.6071] w=0.2889 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)C122.CB) [> 3.3493 = 5.5821 < 7.2568] w=0.2889 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)L91.CB) [> 4.3332 = 7.2220 < 9.3886] w=0.2889 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)M86.CB) [> 3.6177 = 6.0296 < 7.8384] w=0.2889 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)W84.CB) [> 3.5158 = 5.8597 < 7.6176] w=0.2889 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)C122.CB) [> 2.9207 = 4.8678 < 6.3281] w=0.2889 to align # Constraint # added constraint: constraint((T0342)F17.CB, (T0342)L91.CB) [> 2.9306 = 4.8844 < 6.3497] w=0.2889 to align # Constraint # added constraint: constraint((T0342)F17.CB, (T0342)M86.CB) [> 3.1809 = 5.3015 < 6.8919] w=0.2889 to align # Constraint # added constraint: constraint((T0342)D48.CB, (T0342)E78.CB) [> 4.4740 = 7.4566 < 9.6936] w=0.2889 to align # Constraint # added constraint: constraint((T0342)D48.CB, (T0342)G76.CA) [> 4.1382 = 6.8969 < 8.9660] w=0.2889 to align # Constraint # added constraint: constraint((T0342)Q47.CB, (T0342)E78.CB) [> 3.2816 = 5.4694 < 7.1102] w=0.2889 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)T114.CB) [> 3.2459 = 5.4099 < 7.0329] w=0.2889 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)W80.CB) [> 4.5278 = 7.5463 < 9.8102] w=0.2889 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)G81.CA) [> 3.7084 = 6.1807 < 8.0349] w=0.2889 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)V82.CB) [> 4.0018 = 6.6696 < 8.6705] w=0.2889 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)W84.CB) [> 4.2061 = 7.0102 < 9.1132] w=0.2889 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)V83.CB) [> 2.9668 = 4.9447 < 6.4281] w=0.2889 to align # Constraint # added constraint: constraint((T0342)F40.CB, (T0342)W84.CB) [> 3.5995 = 5.9991 < 7.7989] w=0.2889 to align # Constraint # added constraint: constraint((T0342)F40.CB, (T0342)V83.CB) [> 4.5551 = 7.5918 < 9.8693] w=0.2889 to align # Constraint # added constraint: constraint((T0342)L26.CB, (T0342)G81.CA) [> 4.0999 = 6.8332 < 8.8831] w=0.2889 to align # Constraint # added constraint: constraint((T0342)Y105.CB, (T0342)I142.CB) [> 3.6087 = 6.0145 < 7.8189] w=0.2873 to align # Constraint # added constraint: constraint((T0342)V83.CB, (T0342)C122.CB) [> 3.7170 = 6.1951 < 8.0536] w=0.2868 to align # Constraint # added constraint: constraint((T0342)N129.CB, (T0342)Y139.CB) [> 4.2039 = 7.0065 < 9.1085] w=0.2865 to align # Constraint # added constraint: constraint((T0342)M104.CB, (T0342)Q138.CB) [> 3.0474 = 5.0789 < 6.6026] w=0.2848 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)F41.CB) [> 4.2215 = 7.0358 < 9.1466] w=0.2834 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)L51.CB) [> 3.5568 = 5.9280 < 7.7064] w=0.2830 to align # Constraint # added constraint: constraint((T0342)F72.CB, (T0342)M127.CB) [> 3.3104 = 5.5173 < 7.1725] w=0.2830 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)W64.CB) [> 3.7357 = 6.2263 < 8.0941] w=0.2825 to align # Constraint # added constraint: constraint((T0342)D48.CB, (T0342)Q73.CB) [> 3.4564 = 5.7607 < 7.4890] w=0.2782 to align # Constraint # added constraint: constraint((T0342)S16.CB, (T0342)K85.CB) [> 3.1233 = 5.2055 < 6.7672] w=0.2779 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)W80.CB) [> 3.8814 = 6.4690 < 8.4096] w=0.2779 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)V83.CB) [> 3.5954 = 5.9922 < 7.7899] w=0.2779 to align # Constraint # added constraint: constraint((T0342)V83.CB, (T0342)V110.CB) [> 3.1040 = 5.1734 < 6.7254] w=0.2769 to align # Constraint # added constraint: constraint((T0342)G54.CA, (T0342)A69.CB) [> 3.8691 = 6.4485 < 8.3830] w=0.2768 to align # Constraint # added constraint: constraint((T0342)M127.CB, (T0342)I142.CB) [> 3.6927 = 6.1544 < 8.0008] w=0.2754 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)G67.CA) [> 3.9120 = 6.5200 < 8.4760] w=0.2752 to align # Constraint # added constraint: constraint((T0342)G54.CA, (T0342)T70.CB) [> 4.1481 = 6.9135 < 8.9875] w=0.2695 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)W80.CB) [> 3.6470 = 6.0784 < 7.9019] w=0.2665 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)T70.CB) [> 3.9640 = 6.6067 < 8.5887] w=0.2660 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)V83.CB) [> 4.2771 = 7.1285 < 9.2670] w=0.2626 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)G81.CA) [> 3.9455 = 6.5759 < 8.5486] w=0.2626 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)I71.CB) [> 3.6554 = 6.0923 < 7.9200] w=0.2624 to align # Constraint # added constraint: constraint((T0342)L94.CB, (T0342)Y125.CB) [> 4.2558 = 7.0931 < 9.2210] w=0.2609 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)I71.CB) [> 4.3344 = 7.2240 < 9.3912] w=0.2609 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)Q115.CB) [> 3.3205 = 5.5341 < 7.1944] w=0.2568 to align # Constraint # added constraint: constraint((T0342)F17.CB, (T0342)R123.CB) [> 3.9118 = 6.5197 < 8.4756] w=0.2568 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)R123.CB) [> 4.2129 = 7.0215 < 9.1280] w=0.2568 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)S124.CB) [> 3.9587 = 6.5979 < 8.5772] w=0.2568 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)V110.CB) [> 3.8620 = 6.4367 < 8.3677] w=0.2568 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)S124.CB) [> 2.6643 = 4.4405 < 5.7727] w=0.2568 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)S124.CB) [> 4.2135 = 7.0225 < 9.1293] w=0.2568 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)V110.CB) [> 3.3196 = 5.5326 < 7.1923] w=0.2568 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)K111.CB) [> 4.5136 = 7.5227 < 9.7795] w=0.2568 to align # Constraint # added constraint: constraint((T0342)Q73.CB, (T0342)L126.CB) [> 3.7278 = 6.2130 < 8.0768] w=0.2568 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)I71.CB) [> 4.0320 = 6.7199 < 8.7359] w=0.2567 to align # Constraint # added constraint: constraint((T0342)Y125.CB, (T0342)I176.CB) [> 4.0507 = 6.7511 < 8.7764] w=0.2514 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)T114.CB) [> 3.5036 = 5.8394 < 7.5912] w=0.2495 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)V112.CB) [> 2.5387 = 4.2312 < 5.5006] w=0.2495 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)A113.CB) [> 3.8354 = 6.3923 < 8.3099] w=0.2495 to align # Constraint # added constraint: constraint((T0342)R45.CB, (T0342)V112.CB) [> 3.9076 = 6.5127 < 8.4665] w=0.2495 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)G81.CA) [> 3.1480 = 5.2467 < 6.8207] w=0.2465 to align # Constraint # added constraint: constraint((T0342)R45.CB, (T0342)A113.CB) [> 3.1239 = 5.2065 < 6.7684] w=0.2452 to align # Constraint # added constraint: constraint((T0342)L26.CB, (T0342)V82.CB) [> 3.3455 = 5.5759 < 7.2487] w=0.2440 to align # Constraint # added constraint: constraint((T0342)T128.CB, (T0342)Y139.CB) [> 4.3825 = 7.3042 < 9.4954] w=0.2410 to align # Constraint # added constraint: constraint((T0342)M127.CB, (T0342)I143.CB) [> 3.3810 = 5.6351 < 7.3256] w=0.2403 to align # Constraint # added constraint: constraint((T0342)F49.CB, (T0342)T70.CB) [> 3.3721 = 5.6202 < 7.3063] w=0.2388 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)T63.CB) [> 3.3953 = 5.6589 < 7.3565] w=0.2387 to align # Constraint # added constraint: constraint((T0342)F17.CB, (T0342)N87.CB) [> 4.4674 = 7.4457 < 9.6794] w=0.2373 to align # Constraint # added constraint: constraint((T0342)G81.CA, (T0342)V110.CB) [> 3.6925 = 6.1542 < 8.0005] w=0.2351 to align # Constraint # added constraint: constraint((T0342)M104.CB, (T0342)L126.CB) [> 3.7057 = 6.1763 < 8.0291] w=0.2312 to align # Constraint # added constraint: constraint((T0342)N25.CB, (T0342)R34.CB) [> 4.1791 = 6.9651 < 9.0546] w=0.2247 to align # Constraint # added constraint: constraint((T0342)R34.CB, (T0342)Q97.CB) [> 4.3645 = 7.2741 < 9.4564] w=0.2247 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)V112.CB) [> 3.1242 = 5.2071 < 6.7692] w=0.2247 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)V112.CB) [> 3.2070 = 5.3451 < 6.9486] w=0.2247 to align # Constraint # added constraint: constraint((T0342)F49.CB, (T0342)D77.CB) [> 3.8693 = 6.4488 < 8.3834] w=0.2247 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)D77.CB) [> 3.0088 = 5.0146 < 6.5190] w=0.2247 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)T70.CB) [> 4.2074 = 7.0123 < 9.1160] w=0.2226 to align # Constraint # added constraint: constraint((T0342)E98.CB, (T0342)Y125.CB) [> 2.8683 = 4.7806 < 6.2147] w=0.2204 to align # Constraint # added constraint: constraint((T0342)A21.CB, (T0342)I31.CB) [> 4.1384 = 6.8973 < 8.9665] w=0.2193 to align # Constraint # added constraint: constraint((T0342)I68.CB, (T0342)V82.CB) [> 3.5062 = 5.8436 < 7.5967] w=0.2191 to align # Constraint # added constraint: constraint((T0342)F72.CB, (T0342)Y130.CB) [> 3.7702 = 6.2836 < 8.1687] w=0.2188 to align # Constraint # added constraint: constraint((T0342)L126.CB, (T0342)Y139.CB) [> 3.5607 = 5.9345 < 7.7148] w=0.2182 to align # Constraint # added constraint: constraint((T0342)S124.CB, (T0342)Y139.CB) [> 4.1885 = 6.9808 < 9.0751] w=0.2182 to align # Constraint # added constraint: constraint((T0342)A38.CB, (T0342)N87.CB) [> 4.5631 = 7.6052 < 9.8867] w=0.2179 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)K85.CB) [> 3.6760 = 6.1266 < 7.9646] w=0.2179 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)V83.CB) [> 3.3041 = 5.5068 < 7.1589] w=0.2179 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)V82.CB) [> 3.6400 = 6.0667 < 7.8868] w=0.2179 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)V82.CB) [> 3.9943 = 6.6572 < 8.6543] w=0.2166 to align # Constraint # added constraint: constraint((T0342)A38.CB, (T0342)M86.CB) [> 2.8716 = 4.7860 < 6.2218] w=0.2150 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)V83.CB) [> 3.0813 = 5.1355 < 6.6762] w=0.2148 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)W84.CB) [> 4.4437 = 7.4063 < 9.6281] w=0.2129 to align # Constraint # added constraint: constraint((T0342)G54.CA, (T0342)I68.CB) [> 3.9297 = 6.5494 < 8.5142] w=0.2126 to align # Constraint # added constraint: constraint((T0342)I163.CB, (T0342)I176.CB) [> 4.0758 = 6.7930 < 8.8309] w=0.2124 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)G67.CA) [> 3.6090 = 6.0150 < 7.8195] w=0.2089 to align # Constraint # added constraint: constraint((T0342)G81.CA, (T0342)K111.CB) [> 3.8566 = 6.4276 < 8.3559] w=0.2087 to align # Constraint # added constraint: constraint((T0342)T28.CB, (T0342)A38.CB) [> 3.0521 = 5.0868 < 6.6129] w=0.2079 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)T70.CB) [> 3.8647 = 6.4412 < 8.3735] w=0.2052 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)V79.CB) [> 3.8999 = 6.4999 < 8.4498] w=0.2023 to align # Constraint # added constraint: constraint((T0342)V83.CB, (T0342)S124.CB) [> 3.3941 = 5.6569 < 7.3540] w=0.2021 to align # Constraint # added constraint: constraint((T0342)Y125.CB, (T0342)I143.CB) [> 3.9446 = 6.5743 < 8.5466] w=0.1999 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)I68.CB) [> 3.9054 = 6.5090 < 8.4618] w=0.1966 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)V79.CB) [> 4.0968 = 6.8280 < 8.8764] w=0.1958 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)V83.CB) [> 4.2019 = 7.0031 < 9.1041] w=0.1947 to align # Constraint # added constraint: constraint((T0342)F40.CB, (T0342)D52.CB) [> 3.7735 = 6.2892 < 8.1759] w=0.1942 to align # Constraint # added constraint: constraint((T0342)I68.CB, (T0342)V83.CB) [> 4.2553 = 7.0922 < 9.2199] w=0.1939 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)T63.CB) [> 3.7775 = 6.2959 < 8.1847] w=0.1926 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)D77.CB) [> 4.5140 = 7.5234 < 9.7804] w=0.1926 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)A113.CB) [> 4.5332 = 7.5553 < 9.8218] w=0.1926 to align # Constraint # added constraint: constraint((T0342)V83.CB, (T0342)T114.CB) [> 3.7603 = 6.2671 < 8.1472] w=0.1926 to align # Constraint # added constraint: constraint((T0342)F40.CB, (T0342)V82.CB) [> 4.0559 = 6.7598 < 8.7877] w=0.1926 to align # Constraint # added constraint: constraint((T0342)A38.CB, (T0342)N90.CB) [> 3.4615 = 5.7692 < 7.4999] w=0.1926 to align # Constraint # added constraint: constraint((T0342)A38.CB, (T0342)K85.CB) [> 4.1743 = 6.9572 < 9.0444] w=0.1926 to align # Constraint # added constraint: constraint((T0342)A38.CB, (T0342)W84.CB) [> 2.8327 = 4.7212 < 6.1375] w=0.1926 to align # Constraint # added constraint: constraint((T0342)S24.CB, (T0342)A69.CB) [> 3.6518 = 6.0864 < 7.9123] w=0.1926 to align # Constraint # added constraint: constraint((T0342)G23.CA, (T0342)G81.CA) [> 4.6763 = 7.7938 < 10.1320] w=0.1926 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)V82.CB) [> 4.7159 = 7.8598 < 10.2177] w=0.1926 to align # Constraint # added constraint: constraint((T0342)A21.CB, (T0342)W84.CB) [> 4.0557 = 6.7596 < 8.7874] w=0.1926 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)W84.CB) [> 4.6088 = 7.6813 < 9.9856] w=0.1926 to align # Constraint # added constraint: constraint((T0342)V110.CB, (T0342)L126.CB) [> 4.6725 = 7.7875 < 10.1237] w=0.1926 to align # Constraint # added constraint: constraint((T0342)D48.CB, (T0342)V110.CB) [> 4.2732 = 7.1221 < 9.2587] w=0.1926 to align # Constraint # added constraint: constraint((T0342)Q47.CB, (T0342)K111.CB) [> 3.6783 = 6.1305 < 7.9697] w=0.1926 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)C122.CB) [> 4.4121 = 7.3535 < 9.5596] w=0.1926 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)I120.CB) [> 4.2282 = 7.0469 < 9.1610] w=0.1926 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)T114.CB) [> 4.1618 = 6.9364 < 9.0173] w=0.1926 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)L94.CB) [> 4.1192 = 6.8653 < 8.9249] w=0.1926 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)I120.CB) [> 3.8396 = 6.3993 < 8.3191] w=0.1926 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)M86.CB) [> 4.4064 = 7.3440 < 9.5472] w=0.1926 to align # Constraint # added constraint: constraint((T0342)S16.CB, (T0342)N87.CB) [> 3.7340 = 6.2233 < 8.0903] w=0.1926 to align # Constraint # added constraint: constraint((T0342)S16.CB, (T0342)M86.CB) [> 3.7689 = 6.2815 < 8.1660] w=0.1926 to align # Constraint # added constraint: constraint((T0342)E15.CB, (T0342)K88.CB) [> 4.2732 = 7.1220 < 9.2585] w=0.1926 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)Q62.CB) [> 3.8660 = 6.4433 < 8.3762] w=0.1925 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)T63.CB) [> 3.5089 = 5.8482 < 7.6026] w=0.1920 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)C42.CB) [> 3.7943 = 6.3239 < 8.2211] w=0.1916 to align # Constraint # added constraint: constraint((T0342)E109.CB, (T0342)I120.CB) [> 3.9559 = 6.5932 < 8.5711] w=0.1908 to align # Constraint # added constraint: constraint((T0342)V110.CB, (T0342)I120.CB) [> 4.0016 = 6.6693 < 8.6700] w=0.1908 to align # Constraint # added constraint: constraint((T0342)I108.CB, (T0342)C122.CB) [> 3.9070 = 6.5117 < 8.4651] w=0.1899 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)V82.CB) [> 3.1579 = 5.2631 < 6.8421] w=0.1888 to align # Constraint # added constraint: constraint((T0342)G81.CA, (T0342)V112.CB) [> 3.5548 = 5.9247 < 7.7021] w=0.1837 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)F53.CB) [> 3.5964 = 5.9940 < 7.7922] w=0.1836 to align # Constraint # added constraint: constraint((T0342)E109.CB, (T0342)Y125.CB) [> 4.5646 = 7.6076 < 9.8899] w=0.1822 to align # Constraint # added constraint: constraint((T0342)G23.CA, (T0342)I71.CB) [> 4.4516 = 7.4193 < 9.6451] w=0.1816 to align # Constraint # added constraint: constraint((T0342)S16.CB, (T0342)W84.CB) [> 4.3505 = 7.2509 < 9.4261] w=0.1816 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)V82.CB) [> 4.2658 = 7.1097 < 9.2426] w=0.1816 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)V79.CB) [> 4.1843 = 6.9738 < 9.0659] w=0.1816 to align # Constraint # added constraint: constraint((T0342)A21.CB, (T0342)V83.CB) [> 4.0195 = 6.6992 < 8.7090] w=0.1816 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)T70.CB) [> 4.2807 = 7.1345 < 9.2749] w=0.1816 to align # Constraint # added constraint: constraint((T0342)V83.CB, (T0342)E109.CB) [> 4.4802 = 7.4670 < 9.7071] w=0.1809 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)I71.CB) [> 3.7394 = 6.2324 < 8.1021] w=0.1794 to align # Constraint # added constraint: constraint((T0342)G81.CA, (T0342)I108.CB) [> 3.4603 = 5.7671 < 7.4973] w=0.1780 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)T70.CB) [> 3.0645 = 5.1075 < 6.6398] w=0.1769 to align # Constraint # added constraint: constraint((T0342)V82.CB, (T0342)V112.CB) [> 4.0847 = 6.8078 < 8.8502] w=0.1751 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)V82.CB) [> 4.0271 = 6.7118 < 8.7254] w=0.1750 to align # Constraint # added constraint: constraint((T0342)A21.CB, (T0342)C42.CB) [> 4.0356 = 6.7260 < 8.7438] w=0.1747 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)C42.CB) [> 3.6778 = 6.1297 < 7.9686] w=0.1747 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)T70.CB) [> 4.2614 = 7.1024 < 9.2331] w=0.1744 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)I68.CB) [> 4.3059 = 7.1764 < 9.3294] w=0.1738 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)G66.CA) [> 3.7992 = 6.3320 < 8.2317] w=0.1720 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)I68.CB) [> 3.8527 = 6.4212 < 8.3475] w=0.1713 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)I108.CB) [> 3.3328 = 5.5546 < 7.2210] w=0.1707 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)F41.CB) [> 3.7697 = 6.2828 < 8.1676] w=0.1692 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)F41.CB) [> 3.5934 = 5.9890 < 7.7857] w=0.1692 to align # Constraint # added constraint: constraint((T0342)G67.CA, (T0342)W84.CB) [> 3.6721 = 6.1201 < 7.9562] w=0.1679 to align # Constraint # added constraint: constraint((T0342)I68.CB, (T0342)W84.CB) [> 3.3513 = 5.5855 < 7.2612] w=0.1654 to align # Constraint # added constraint: constraint((T0342)K85.CB, (T0342)V110.CB) [> 4.2989 = 7.1647 < 9.3142] w=0.1629 to align # Constraint # added constraint: constraint((T0342)W84.CB, (T0342)E109.CB) [> 3.5355 = 5.8926 < 7.6603] w=0.1612 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)G81.CA) [> 3.6552 = 6.0920 < 7.9196] w=0.1608 to align # Constraint # added constraint: constraint((T0342)A21.CB, (T0342)Y125.CB) [> 4.6516 = 7.7526 < 10.0784] w=0.1605 to align # Constraint # added constraint: constraint((T0342)Q47.CB, (T0342)A113.CB) [> 3.4830 = 5.8050 < 7.5465] w=0.1605 to align # Constraint # added constraint: constraint((T0342)S24.CB, (T0342)I68.CB) [> 4.1716 = 6.9527 < 9.0386] w=0.1605 to align # Constraint # added constraint: constraint((T0342)V82.CB, (T0342)V110.CB) [> 4.1934 = 6.9890 < 9.0857] w=0.1573 to align # Constraint # added constraint: constraint((T0342)V82.CB, (T0342)A113.CB) [> 4.1839 = 6.9731 < 9.0651] w=0.1570 to align # Constraint # added constraint: constraint((T0342)V106.CB, (T0342)S124.CB) [> 4.2652 = 7.1087 < 9.2412] w=0.1569 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)A69.CB) [> 3.3154 = 5.5257 < 7.1834] w=0.1561 to align # Constraint # added constraint: constraint((T0342)W80.CB, (T0342)V112.CB) [> 4.2193 = 7.0322 < 9.1419] w=0.1559 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)Q73.CB) [> 2.7853 = 4.6422 < 6.0349] w=0.1558 to align # Constraint # added constraint: constraint((T0342)F72.CB, (T0342)T128.CB) [> 4.4027 = 7.3379 < 9.5392] w=0.1548 to align # Constraint # added constraint: constraint((T0342)Y125.CB, (T0342)G146.CA) [> 3.8335 = 6.3891 < 8.3059] w=0.1541 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)A69.CB) [> 4.1816 = 6.9694 < 9.0602] w=0.1539 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)A39.CB) [> 4.0680 = 6.7800 < 8.8140] w=0.1520 to align # Constraint # added constraint: constraint((T0342)L27.CB, (T0342)F40.CB) [> 4.6306 = 7.7177 < 10.0330] w=0.1512 to align # Constraint # added constraint: constraint((T0342)Y125.CB, (T0342)I179.CB) [> 4.5003 = 7.5006 < 9.7508] w=0.1502 to align # Constraint # added constraint: constraint((T0342)Y125.CB, (T0342)Y139.CB) [> 4.2767 = 7.1279 < 9.2663] w=0.1500 to align # Constraint # added constraint: constraint((T0342)V107.CB, (T0342)I142.CB) [> 3.9381 = 6.5636 < 8.5327] w=0.1500 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)V107.CB) [> 4.1767 = 6.9612 < 9.0495] w=0.1495 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)M86.CB) [> 3.9370 = 6.5616 < 8.5301] w=0.1484 to align # Constraint # added constraint: constraint((T0342)Q73.CB, (T0342)V106.CB) [> 3.9294 = 6.5490 < 8.5137] w=0.1460 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)Q62.CB) [> 4.0442 = 6.7404 < 8.7625] w=0.1454 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)L51.CB) [> 3.9340 = 6.5567 < 8.5237] w=0.1429 to align # Constraint # added constraint: constraint((T0342)I31.CB, (T0342)I71.CB) [> 4.4913 = 7.4856 < 9.7312] w=0.1429 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)L46.CB) [> 4.4169 = 7.3615 < 9.5700] w=0.1410 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)Q62.CB) [> 3.1833 = 5.3056 < 6.8972] w=0.1394 to align # Constraint # added constraint: constraint((T0342)W80.CB, (T0342)T114.CB) [> 4.0588 = 6.7646 < 8.7940] w=0.1375 to align # Constraint # added constraint: constraint((T0342)A39.CB, (T0342)H65.CB) [> 3.8001 = 6.3335 < 8.2336] w=0.1374 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)K50.CB) [> 3.4513 = 5.7523 < 7.4779] w=0.1372 to align # Constraint # added constraint: constraint((T0342)I31.CB, (T0342)D52.CB) [> 3.8615 = 6.4358 < 8.3666] w=0.1368 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)H65.CB) [> 3.5014 = 5.8357 < 7.5864] w=0.1363 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)I31.CB) [> 4.2172 = 7.0287 < 9.1373] w=0.1340 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)G66.CA) [> 3.7216 = 6.2027 < 8.0635] w=0.1339 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)Q73.CB) [> 4.1472 = 6.9120 < 8.9856] w=0.1324 to align # Constraint # added constraint: constraint((T0342)Y125.CB, (T0342)I180.CB) [> 3.2999 = 5.4998 < 7.1498] w=0.1311 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)I68.CB) [> 4.2537 = 7.0896 < 9.2165] w=0.1309 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)I68.CB) [> 3.4821 = 5.8035 < 7.5445] w=0.1309 to align # Constraint # added constraint: constraint((T0342)A39.CB, (T0342)T70.CB) [> 3.3328 = 5.5547 < 7.2212] w=0.1309 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)W64.CB) [> 3.6911 = 6.1519 < 7.9974] w=0.1301 to align # Constraint # added constraint: constraint((T0342)I31.CB, (T0342)F41.CB) [> 3.3353 = 5.5588 < 7.2265] w=0.1298 to align # Constraint # added constraint: constraint((T0342)W80.CB, (T0342)A113.CB) [> 2.5371 = 4.2284 < 5.4970] w=0.1295 to align # Constraint # added constraint: constraint((T0342)V79.CB, (T0342)T114.CB) [> 2.8631 = 4.7718 < 6.2034] w=0.1295 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)G66.CA) [> 4.2102 = 7.0170 < 9.1221] w=0.1294 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)G67.CA) [> 4.3242 = 7.2070 < 9.3691] w=0.1294 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)G67.CA) [> 3.8621 = 6.4369 < 8.3680] w=0.1294 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)S61.CB) [> 3.8336 = 6.3893 < 8.3061] w=0.1287 to align # Constraint # added constraint: constraint((T0342)A21.CB, (T0342)N35.CB) [> 4.6766 = 7.7943 < 10.1326] w=0.1284 to align # Constraint # added constraint: constraint((T0342)R34.CB, (T0342)S93.CB) [> 4.1833 = 6.9722 < 9.0638] w=0.1284 to align # Constraint # added constraint: constraint((T0342)R34.CB, (T0342)L94.CB) [> 3.5127 = 5.8546 < 7.6109] w=0.1284 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)T121.CB) [> 3.6089 = 6.0148 < 7.8192] w=0.1284 to align # Constraint # added constraint: constraint((T0342)N35.CB, (T0342)S93.CB) [> 3.5694 = 5.9490 < 7.7337] w=0.1284 to align # Constraint # added constraint: constraint((T0342)I163.CB, (T0342)I180.CB) [> 3.7987 = 6.3312 < 8.2306] w=0.1281 to align # Constraint # added constraint: constraint((T0342)W84.CB, (T0342)C122.CB) [> 4.4993 = 7.4989 < 9.7486] w=0.1280 to align # Constraint # added constraint: constraint((T0342)W80.CB, (T0342)K111.CB) [> 3.8514 = 6.4189 < 8.3446] w=0.1267 to align # Constraint # added constraint: constraint((T0342)G66.CA, (T0342)W84.CB) [> 3.6941 = 6.1568 < 8.0038] w=0.1260 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)I68.CB) [> 3.4967 = 5.8278 < 7.5761] w=0.1257 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)I71.CB) [> 4.1727 = 6.9546 < 9.0409] w=0.1255 to align # Constraint # added constraint: constraint((T0342)V107.CB, (T0342)M127.CB) [> 4.4268 = 7.3780 < 9.5914] w=0.1248 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)A44.CB) [> 3.5912 = 5.9853 < 7.7809] w=0.1248 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)A39.CB) [> 4.4729 = 7.4548 < 9.6913] w=0.1241 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)C42.CB) [> 4.0906 = 6.8176 < 8.8629] w=0.1231 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)V43.CB) [> 4.5182 = 7.5304 < 9.7895] w=0.1231 to align # Constraint # added constraint: constraint((T0342)V79.CB, (T0342)Y156.CB) [> 4.2519 = 7.0864 < 9.2124] w=0.1227 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)W84.CB) [> 4.0950 = 6.8250 < 8.8724] w=0.1216 to align # Constraint # added constraint: constraint((T0342)G81.CA, (T0342)L126.CB) [> 3.1340 = 5.2233 < 6.7903] w=0.1215 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)V110.CB) [> 3.1222 = 5.2036 < 6.7647] w=0.1207 to align # Constraint # added constraint: constraint((T0342)L94.CB, (T0342)V107.CB) [> 4.1783 = 6.9638 < 9.0529] w=0.1191 to align # Constraint # added constraint: constraint((T0342)W80.CB, (T0342)Y156.CB) [> 3.6574 = 6.0957 < 7.9244] w=0.1191 to align # Constraint # added constraint: constraint((T0342)L91.CB, (T0342)V107.CB) [> 3.2280 = 5.3800 < 6.9940] w=0.1188 to align # Constraint # added constraint: constraint((T0342)I108.CB, (T0342)T121.CB) [> 3.5903 = 5.9839 < 7.7790] w=0.1177 to align # Constraint # added constraint: constraint((T0342)S124.CB, (T0342)I143.CB) [> 3.7759 = 6.2932 < 8.1811] w=0.1169 to align # Constraint # added constraint: constraint((T0342)A39.CB, (T0342)W64.CB) [> 3.8375 = 6.3957 < 8.3145] w=0.1142 to align # Constraint # added constraint: constraint((T0342)A38.CB, (T0342)W64.CB) [> 3.2917 = 5.4862 < 7.1321] w=0.1142 to align # Constraint # added constraint: constraint((T0342)G58.CA, (T0342)I68.CB) [> 3.8982 = 6.4970 < 8.4461] w=0.1138 to align # Constraint # added constraint: constraint((T0342)G67.CA, (T0342)K85.CB) [> 3.5247 = 5.8744 < 7.6368] w=0.1132 to align # Constraint # added constraint: constraint((T0342)G67.CA, (T0342)Y125.CB) [> 4.2765 = 7.1275 < 9.2658] w=0.1132 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)T70.CB) [> 3.5501 = 5.9168 < 7.6919] w=0.1132 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)V43.CB) [> 3.9359 = 6.5598 < 8.5278] w=0.1131 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)A44.CB) [> 3.3991 = 5.6652 < 7.3647] w=0.1131 to align # Constraint # added constraint: constraint((T0342)V110.CB, (T0342)E119.CB) [> 3.5465 = 5.9109 < 7.6841] w=0.1124 to align # Constraint # added constraint: constraint((T0342)D48.CB, (T0342)G67.CA) [> 3.6593 = 6.0989 < 7.9285] w=0.1103 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)G66.CA) [> 4.3791 = 7.2986 < 9.4881] w=0.1085 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)I68.CB) [> 2.9803 = 4.9672 < 6.4573] w=0.1081 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)A69.CB) [> 4.2136 = 7.0226 < 9.1294] w=0.1081 to align # Constraint # added constraint: constraint((T0342)L160.CB, (T0342)I180.CB) [> 3.8510 = 6.4184 < 8.3440] w=0.1079 to align # Constraint # added constraint: constraint((T0342)E164.CB, (T0342)I176.CB) [> 3.8978 = 6.4963 < 8.4452] w=0.1079 to align # Constraint # added constraint: constraint((T0342)A38.CB, (T0342)N55.CB) [> 4.3073 = 7.1788 < 9.3324] w=0.1077 to align # Constraint # added constraint: constraint((T0342)M104.CB, (T0342)K141.CB) [> 3.3621 = 5.6034 < 7.2844] w=0.1066 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)V110.CB) [> 3.9156 = 6.5261 < 8.4839] w=0.1065 to align # Constraint # added constraint: constraint((T0342)A21.CB, (T0342)F41.CB) [> 3.9202 = 6.5337 < 8.4938] w=0.1062 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)I71.CB) [> 4.1087 = 6.8478 < 8.9022] w=0.1057 to align # Constraint # added constraint: constraint((T0342)K85.CB, (T0342)V106.CB) [> 3.5414 = 5.9023 < 7.6730] w=0.1056 to align # Constraint # added constraint: constraint((T0342)V110.CB, (T0342)Y125.CB) [> 3.7946 = 6.3243 < 8.2216] w=0.1055 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)H65.CB) [> 3.1692 = 5.2819 < 6.8665] w=0.1054 to align # Constraint # added constraint: constraint((T0342)R123.CB, (T0342)N150.CB) [> 3.1342 = 5.2238 < 6.7909] w=0.1053 to align # Constraint # added constraint: constraint((T0342)I68.CB, (T0342)G81.CA) [> 3.8262 = 6.3771 < 8.2902] w=0.1052 to align # Constraint # added constraint: constraint((T0342)C144.CB, (T0342)Q157.CB) [> 3.3263 = 5.5439 < 7.2071] w=0.1043 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)A69.CB) [> 3.7334 = 6.2224 < 8.0891] w=0.1039 to align # Constraint # added constraint: constraint((T0342)W84.CB, (T0342)V110.CB) [> 4.0061 = 6.6768 < 8.6798] w=0.1028 to align # Constraint # added constraint: constraint((T0342)S24.CB, (T0342)F53.CB) [> 3.7925 = 6.3208 < 8.2171] w=0.1022 to align # Constraint # added constraint: constraint((T0342)G23.CA, (T0342)F53.CB) [> 4.4009 = 7.3348 < 9.5352] w=0.1022 to align # Constraint # added constraint: constraint((T0342)V110.CB, (T0342)S173.CB) [> 3.3421 = 5.5702 < 7.2413] w=0.1021 to align # Constraint # added constraint: constraint((T0342)A147.CB, (T0342)Q157.CB) [> 3.6157 = 6.0262 < 7.8341] w=0.1017 to align # Constraint # added constraint: constraint((T0342)C144.CB, (T0342)I179.CB) [> 3.5374 = 5.8956 < 7.6643] w=0.1016 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)T63.CB) [> 3.7805 = 6.3008 < 8.1911] w=0.1014 to align # Constraint # added constraint: constraint((T0342)E98.CB, (T0342)E109.CB) [> 3.8786 = 6.4642 < 8.4035] w=0.1012 to align # Constraint # added constraint: constraint((T0342)L94.CB, (T0342)E109.CB) [> 2.8656 = 4.7760 < 6.2088] w=0.1012 to align # Constraint # added constraint: constraint((T0342)M104.CB, (T0342)Y125.CB) [> 3.6313 = 6.0522 < 7.8679] w=0.1001 to align # Constraint # added constraint: constraint((T0342)V82.CB, (T0342)L126.CB) [> 3.8431 = 6.4052 < 8.3267] w=0.1000 to align # Constraint # added constraint: constraint((T0342)Y125.CB, (T0342)M145.CB) [> 3.9192 = 6.5319 < 8.4915] w=0.0996 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)E78.CB) [> 4.4748 = 7.4579 < 9.6953] w=0.0995 to align # Constraint # added constraint: constraint((T0342)K140.CB, (T0342)I176.CB) [> 4.1130 = 6.8549 < 8.9114] w=0.0993 to align # Constraint # added constraint: constraint((T0342)D48.CB, (T0342)H65.CB) [> 3.3022 = 5.5037 < 7.1549] w=0.0992 to align # Constraint # added constraint: constraint((T0342)D48.CB, (T0342)G66.CA) [> 3.9928 = 6.6546 < 8.6510] w=0.0992 to align # Constraint # added constraint: constraint((T0342)V83.CB, (T0342)R123.CB) [> 4.5988 = 7.6647 < 9.9641] w=0.0988 to align # Constraint # added constraint: constraint((T0342)V82.CB, (T0342)S124.CB) [> 3.9443 = 6.5738 < 8.5459] w=0.0988 to align # Constraint # added constraint: constraint((T0342)G81.CA, (T0342)Y125.CB) [> 4.0564 = 6.7607 < 8.7889] w=0.0988 to align # Constraint # added constraint: constraint((T0342)G81.CA, (T0342)S124.CB) [> 3.5835 = 5.9724 < 7.7642] w=0.0988 to align # Constraint # added constraint: constraint((T0342)G81.CA, (T0342)V107.CB) [> 3.9836 = 6.6393 < 8.6311] w=0.0988 to align # Constraint # added constraint: constraint((T0342)E164.CB, (T0342)S173.CB) [> 3.5778 = 5.9629 < 7.7518] w=0.0974 to align # Constraint # added constraint: constraint((T0342)A21.CB, (T0342)A44.CB) [> 4.1148 = 6.8580 < 8.9154] w=0.0970 to align # Constraint # added constraint: constraint((T0342)D95.CB, (T0342)V106.CB) [> 4.2785 = 7.1308 < 9.2700] w=0.0967 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)M127.CB) [> 4.4886 = 7.4810 < 9.7253] w=0.0963 to align # Constraint # added constraint: constraint((T0342)K59.CB, (T0342)T70.CB) [> 3.8004 = 6.3339 < 8.2341] w=0.0963 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)I120.CB) [> 4.7721 = 7.9535 < 10.3396] w=0.0963 to align # Constraint # added constraint: constraint((T0342)V83.CB, (T0342)I120.CB) [> 3.7010 = 6.1683 < 8.0188] w=0.0963 to align # Constraint # added constraint: constraint((T0342)V106.CB, (T0342)N129.CB) [> 4.5302 = 7.5503 < 9.8154] w=0.0963 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)T114.CB) [> 4.2781 = 7.1301 < 9.2691] w=0.0963 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)T114.CB) [> 3.4287 = 5.7145 < 7.4289] w=0.0963 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)K118.CB) [> 3.9973 = 6.6622 < 8.6608] w=0.0963 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)G117.CA) [> 3.9394 = 6.5657 < 8.5354] w=0.0963 to align # Constraint # added constraint: constraint((T0342)V82.CB, (T0342)C122.CB) [> 3.3811 = 5.6352 < 7.3258] w=0.0963 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)Y156.CB) [> 4.2753 = 7.1255 < 9.2631] w=0.0963 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)G81.CA) [> 4.7901 = 7.9835 < 10.3786] w=0.0963 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)Q157.CB) [> 4.6302 = 7.7170 < 10.0322] w=0.0963 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)V82.CB) [> 3.9518 = 6.5864 < 8.5623] w=0.0963 to align # Constraint # added constraint: constraint((T0342)L26.CB, (T0342)A69.CB) [> 4.4025 = 7.3375 < 9.5387] w=0.0963 to align # Constraint # added constraint: constraint((T0342)N25.CB, (T0342)E98.CB) [> 4.5981 = 7.6636 < 9.9626] w=0.0963 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)V82.CB) [> 3.3214 = 5.5357 < 7.1964] w=0.0963 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)Y125.CB) [> 4.7993 = 7.9989 < 10.3986] w=0.0963 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)Y125.CB) [> 4.2701 = 7.1169 < 9.2519] w=0.0963 to align # Constraint # added constraint: constraint((T0342)G23.CA, (T0342)I68.CB) [> 3.5890 = 5.9817 < 7.7763] w=0.0963 to align # Constraint # added constraint: constraint((T0342)S24.CB, (T0342)E98.CB) [> 4.7035 = 7.8393 < 10.1910] w=0.0963 to align # Constraint # added constraint: constraint((T0342)N25.CB, (T0342)V83.CB) [> 4.3416 = 7.2361 < 9.4069] w=0.0963 to align # Constraint # added constraint: constraint((T0342)G103.CA, (T0342)E131.CB) [> 3.5956 = 5.9927 < 7.7905] w=0.0962 to align # Constraint # added constraint: constraint((T0342)V100.CB, (T0342)I142.CB) [> 3.6353 = 6.0589 < 7.8766] w=0.0962 to align # Constraint # added constraint: constraint((T0342)V83.CB, (T0342)M127.CB) [> 3.5912 = 5.9853 < 7.7809] w=0.0947 to align # Constraint # added constraint: constraint((T0342)V82.CB, (T0342)M127.CB) [> 3.9640 = 6.6067 < 8.5888] w=0.0947 to align # Constraint # added constraint: constraint((T0342)C144.CB, (T0342)K161.CB) [> 3.8712 = 6.4520 < 8.3876] w=0.0945 to align # Constraint # added constraint: constraint((T0342)D95.CB, (T0342)Y105.CB) [> 3.4395 = 5.7324 < 7.4521] w=0.0935 to align # Constraint # added constraint: constraint((T0342)L94.CB, (T0342)Y105.CB) [> 3.7668 = 6.2780 < 8.1614] w=0.0935 to align # Constraint # added constraint: constraint((T0342)G58.CA, (T0342)A69.CB) [> 3.9568 = 6.5947 < 8.5731] w=0.0903 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)R123.CB) [> 4.1601 = 6.9335 < 9.0136] w=0.0903 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)S61.CB) [> 4.0399 = 6.7332 < 8.7531] w=0.0899 to align # Constraint # added constraint: constraint((T0342)S102.CB, (T0342)Y125.CB) [> 4.2737 = 7.1228 < 9.2597] w=0.0895 to align # Constraint # added constraint: constraint((T0342)S61.CB, (T0342)T70.CB) [> 2.8431 = 4.7385 < 6.1600] w=0.0875 to align # Constraint # added constraint: constraint((T0342)P36.CB, (T0342)H65.CB) [> 3.9655 = 6.6092 < 8.5919] w=0.0860 to align # Constraint # added constraint: constraint((T0342)P36.CB, (T0342)G66.CA) [> 3.8287 = 6.3812 < 8.2955] w=0.0860 to align # Constraint # added constraint: constraint((T0342)S37.CB, (T0342)H65.CB) [> 3.1904 = 5.3173 < 6.9125] w=0.0860 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)Y125.CB) [> 3.5187 = 5.8645 < 7.6239] w=0.0860 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)S124.CB) [> 4.4571 = 7.4285 < 9.6571] w=0.0860 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)Y125.CB) [> 4.2096 = 7.0160 < 9.1208] w=0.0860 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)S124.CB) [> 3.2819 = 5.4699 < 7.1108] w=0.0860 to align # Constraint # added constraint: constraint((T0342)I68.CB, (T0342)M127.CB) [> 3.0374 = 5.0623 < 6.5810] w=0.0860 to align # Constraint # added constraint: constraint((T0342)G67.CA, (T0342)M127.CB) [> 3.5879 = 5.9798 < 7.7738] w=0.0860 to align # Constraint # added constraint: constraint((T0342)A21.CB, (T0342)I71.CB) [> 4.7455 = 7.9092 < 10.2820] w=0.0853 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)T70.CB) [> 4.1937 = 6.9896 < 9.0865] w=0.0853 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)A69.CB) [> 3.2468 = 5.4113 < 7.0347] w=0.0853 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)I68.CB) [> 4.5652 = 7.6087 < 9.8913] w=0.0853 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)G67.CA) [> 4.4361 = 7.3935 < 9.6116] w=0.0853 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)I68.CB) [> 4.3327 = 7.2212 < 9.3876] w=0.0853 to align # Constraint # added constraint: constraint((T0342)N129.CB, (T0342)I143.CB) [> 3.5762 = 5.9603 < 7.7484] w=0.0853 to align # Constraint # added constraint: constraint((T0342)V79.CB, (T0342)R123.CB) [> 4.1201 = 6.8669 < 8.9269] w=0.0853 to align # Constraint # added constraint: constraint((T0342)G23.CA, (T0342)W80.CB) [> 3.0585 = 5.0975 < 6.6268] w=0.0853 to align # Constraint # added constraint: constraint((T0342)G23.CA, (T0342)Q73.CB) [> 4.2391 = 7.0652 < 9.1847] w=0.0853 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)T63.CB) [> 3.1966 = 5.3276 < 6.9259] w=0.0847 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)M127.CB) [> 3.5108 = 5.8513 < 7.6067] w=0.0846 to align # Constraint # added constraint: constraint((T0342)V107.CB, (T0342)C122.CB) [> 3.7894 = 6.3156 < 8.2103] w=0.0844 to align # Constraint # added constraint: constraint((T0342)N55.CB, (T0342)H65.CB) [> 3.2453 = 5.4088 < 7.0314] w=0.0835 to align # Constraint # added constraint: constraint((T0342)Y125.CB, (T0342)Y156.CB) [> 3.5942 = 5.9903 < 7.7874] w=0.0832 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)S61.CB) [> 4.1360 = 6.8934 < 8.9614] w=0.0825 to align # Constraint # added constraint: constraint((T0342)G81.CA, (T0342)E109.CB) [> 3.9793 = 6.6322 < 8.6219] w=0.0825 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)H65.CB) [> 4.3731 = 7.2885 < 9.4751] w=0.0821 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)W64.CB) [> 3.3496 = 5.5827 < 7.2575] w=0.0816 to align # Constraint # added constraint: constraint((T0342)C144.CB, (T0342)E158.CB) [> 3.5979 = 5.9965 < 7.7954] w=0.0815 to align # Constraint # added constraint: constraint((T0342)P134.CB, (T0342)I143.CB) [> 4.2655 = 7.1091 < 9.2419] w=0.0813 to align # Constraint # added constraint: constraint((T0342)Y105.CB, (T0342)I143.CB) [> 4.6375 = 7.7292 < 10.0480] w=0.0813 to align # Constraint # added constraint: constraint((T0342)A162.CB, (T0342)E175.CB) [> 4.0263 = 6.7104 < 8.7236] w=0.0812 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)V110.CB) [> 3.5434 = 5.9056 < 7.6773] w=0.0806 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)V110.CB) [> 4.2463 = 7.0771 < 9.2002] w=0.0806 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)H65.CB) [> 3.4618 = 5.7697 < 7.5006] w=0.0797 to align # Constraint # added constraint: constraint((T0342)V82.CB, (T0342)V107.CB) [> 4.0030 = 6.6717 < 8.6732] w=0.0792 to align # Constraint # added constraint: constraint((T0342)V82.CB, (T0342)E109.CB) [> 3.0028 = 5.0047 < 6.5061] w=0.0792 to align # Constraint # added constraint: constraint((T0342)V83.CB, (T0342)V106.CB) [> 4.1228 = 6.8713 < 8.9327] w=0.0792 to align # Constraint # added constraint: constraint((T0342)V83.CB, (T0342)V107.CB) [> 4.0724 = 6.7873 < 8.8235] w=0.0792 to align # Constraint # added constraint: constraint((T0342)W84.CB, (T0342)V107.CB) [> 2.9325 = 4.8875 < 6.3537] w=0.0792 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)G66.CA) [> 4.0746 = 6.7910 < 8.8282] w=0.0790 to align # Constraint # added constraint: constraint((T0342)L126.CB, (T0342)K140.CB) [> 3.9024 = 6.5040 < 8.4552] w=0.0787 to align # Constraint # added constraint: constraint((T0342)K161.CB, (T0342)E177.CB) [> 4.3518 = 7.2530 < 9.4289] w=0.0787 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)W64.CB) [> 3.7176 = 6.1960 < 8.0548] w=0.0786 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)Q97.CB) [> 4.0878 = 6.8130 < 8.8570] w=0.0784 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)T63.CB) [> 4.3110 = 7.1850 < 9.3406] w=0.0775 to align # Constraint # added constraint: constraint((T0342)S56.CB, (T0342)G66.CA) [> 3.5728 = 5.9547 < 7.7411] w=0.0774 to align # Constraint # added constraint: constraint((T0342)I143.CB, (T0342)I176.CB) [> 3.8002 = 6.3336 < 8.2337] w=0.0774 to align # Constraint # added constraint: constraint((T0342)V79.CB, (T0342)C122.CB) [> 3.3830 = 5.6383 < 7.3298] w=0.0774 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)E109.CB) [> 4.6266 = 7.7110 < 10.0243] w=0.0772 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)V110.CB) [> 3.0399 = 5.0665 < 6.5865] w=0.0767 to align # Constraint # added constraint: constraint((T0342)G67.CA, (T0342)V83.CB) [> 3.3042 = 5.5070 < 7.1590] w=0.0765 to align # Constraint # added constraint: constraint((T0342)G67.CA, (T0342)V82.CB) [> 4.0915 = 6.8191 < 8.8648] w=0.0765 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)G66.CA) [> 3.7458 = 6.2429 < 8.1158] w=0.0763 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)V83.CB) [> 3.4293 = 5.7155 < 7.4302] w=0.0763 to align # Constraint # added constraint: constraint((T0342)A162.CB, (T0342)I180.CB) [> 4.2280 = 7.0466 < 9.1607] w=0.0758 to align # Constraint # added constraint: constraint((T0342)E177.CB, (T0342)L188.CB) [> 4.1253 = 6.8755 < 8.9381] w=0.0758 to align # Constraint # added constraint: constraint((T0342)M127.CB, (T0342)I180.CB) [> 3.8187 = 6.3645 < 8.2739] w=0.0755 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)G67.CA) [> 3.3943 = 5.6572 < 7.3543] w=0.0752 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)A69.CB) [> 4.2438 = 7.0731 < 9.1950] w=0.0752 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)F53.CB) [> 4.3827 = 7.3044 < 9.4958] w=0.0746 to align # Constraint # added constraint: constraint((T0342)V110.CB, (T0342)V172.CB) [> 2.7712 = 4.6186 < 6.0042] w=0.0743 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)W84.CB) [> 3.5862 = 5.9770 < 7.7701] w=0.0742 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)A69.CB) [> 4.2940 = 7.1567 < 9.3036] w=0.0740 to align # Constraint # added constraint: constraint((T0342)D8.CB, (T0342)N35.CB) [> 3.9610 = 6.6017 < 8.5822] w=0.0735 to align # Constraint # added constraint: constraint((T0342)Q97.CB, (T0342)I163.CB) [> 3.8617 = 6.4362 < 8.3671] w=0.0734 to align # Constraint # added constraint: constraint((T0342)V112.CB, (T0342)I180.CB) [> 3.9964 = 6.6607 < 8.6589] w=0.0734 to align # Constraint # added constraint: constraint((T0342)V100.CB, (T0342)T121.CB) [> 4.4440 = 7.4066 < 9.6286] w=0.0734 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)V83.CB) [> 4.3214 = 7.2024 < 9.3631] w=0.0734 to align # Constraint # added constraint: constraint((T0342)K140.CB, (T0342)I179.CB) [> 3.2013 = 5.3355 < 6.9361] w=0.0731 to align # Constraint # added constraint: constraint((T0342)K140.CB, (T0342)Q157.CB) [> 3.5990 = 5.9983 < 7.7977] w=0.0721 to align # Constraint # added constraint: constraint((T0342)C144.CB, (T0342)L160.CB) [> 4.4539 = 7.4233 < 9.6502] w=0.0717 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)W84.CB) [> 3.6671 = 6.1118 < 7.9454] w=0.0700 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)V82.CB) [> 3.3616 = 5.6026 < 7.2834] w=0.0700 to align # Constraint # added constraint: constraint((T0342)Y125.CB, (T0342)V172.CB) [> 3.7815 = 6.3025 < 8.1933] w=0.0691 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)L46.CB) [> 2.7482 = 4.5803 < 5.9544] w=0.0684 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)A44.CB) [> 4.6360 = 7.7267 < 10.0447] w=0.0684 to align # Constraint # added constraint: constraint((T0342)V79.CB, (T0342)E109.CB) [> 4.7449 = 7.9081 < 10.2806] w=0.0684 to align # Constraint # added constraint: constraint((T0342)Q97.CB, (T0342)V107.CB) [> 3.9029 = 6.5048 < 8.4563] w=0.0684 to align # Constraint # added constraint: constraint((T0342)V79.CB, (T0342)N166.CB) [> 3.9504 = 6.5839 < 8.5591] w=0.0684 to align # Constraint # added constraint: constraint((T0342)V83.CB, (T0342)L126.CB) [> 3.3699 = 5.6165 < 7.3014] w=0.0683 to align # Constraint # added constraint: constraint((T0342)W84.CB, (T0342)S124.CB) [> 3.9208 = 6.5347 < 8.4951] w=0.0683 to align # Constraint # added constraint: constraint((T0342)W84.CB, (T0342)Y125.CB) [> 3.2096 = 5.3494 < 6.9542] w=0.0683 to align # Constraint # added constraint: constraint((T0342)W84.CB, (T0342)L126.CB) [> 3.6514 = 6.0857 < 7.9114] w=0.0683 to align # Constraint # added constraint: constraint((T0342)L26.CB, (T0342)D48.CB) [> 3.4193 = 5.6988 < 7.4084] w=0.0681 to align # Constraint # added constraint: constraint((T0342)G23.CA, (T0342)L126.CB) [> 4.7066 = 7.8443 < 10.1975] w=0.0670 to align # Constraint # added constraint: constraint((T0342)L26.CB, (T0342)E78.CB) [> 4.6964 = 7.8274 < 10.1756] w=0.0670 to align # Constraint # added constraint: constraint((T0342)E109.CB, (T0342)G146.CA) [> 4.0679 = 6.7799 < 8.8138] w=0.0670 to align # Constraint # added constraint: constraint((T0342)S24.CB, (T0342)W64.CB) [> 4.2705 = 7.1176 < 9.2528] w=0.0642 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)S136.CB) [> 4.2537 = 7.0895 < 9.2163] w=0.0642 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)L126.CB) [> 3.4425 = 5.7375 < 7.4587] w=0.0638 to align # Constraint # added constraint: constraint((T0342)K159.CB, (T0342)I179.CB) [> 3.4270 = 5.7116 < 7.4251] w=0.0608 to align # Constraint # added constraint: constraint((T0342)T60.CB, (T0342)T70.CB) [> 4.4855 = 7.4758 < 9.7185] w=0.0599 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)C122.CB) [> 3.4059 = 5.6765 < 7.3795] w=0.0581 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)L126.CB) [> 2.8444 = 4.7407 < 6.1629] w=0.0581 to align # Constraint # added constraint: constraint((T0342)I68.CB, (T0342)L126.CB) [> 4.4754 = 7.4590 < 9.6967] w=0.0581 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)V79.CB) [> 3.5394 = 5.8990 < 7.6687] w=0.0571 to align # Constraint # added constraint: constraint((T0342)D48.CB, (T0342)S61.CB) [> 3.4666 = 5.7776 < 7.5109] w=0.0570 to align # Constraint # added constraint: constraint((T0342)L27.CB, (T0342)I71.CB) [> 3.3227 = 5.5378 < 7.1992] w=0.0569 to align # Constraint # added constraint: constraint((T0342)L33.CB, (T0342)A147.CB) [> 4.7516 = 7.9193 < 10.2951] w=0.0569 to align # Constraint # added constraint: constraint((T0342)L33.CB, (T0342)N150.CB) [> 3.6663 = 6.1104 < 7.9436] w=0.0569 to align # Constraint # added constraint: constraint((T0342)L160.CB, (T0342)S173.CB) [> 3.6374 = 6.0624 < 7.8811] w=0.0569 to align # Constraint # added constraint: constraint((T0342)G5.CA, (T0342)F40.CB) [> 3.2167 = 5.3612 < 6.9696] w=0.0557 to align # Constraint # added constraint: constraint((T0342)G5.CA, (T0342)F41.CB) [> 3.4130 = 5.6884 < 7.3949] w=0.0557 to align # Constraint # added constraint: constraint((T0342)C6.CB, (T0342)F40.CB) [> 3.8277 = 6.3795 < 8.2934] w=0.0557 to align # Constraint # added constraint: constraint((T0342)C6.CB, (T0342)F41.CB) [> 4.2142 = 7.0237 < 9.1308] w=0.0557 to align # Constraint # added constraint: constraint((T0342)G23.CA, (T0342)F41.CB) [> 2.9290 = 4.8816 < 6.3461] w=0.0556 to align # Constraint # added constraint: constraint((T0342)S24.CB, (T0342)F41.CB) [> 4.0286 = 6.7143 < 8.7286] w=0.0556 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)C122.CB) [> 4.2943 = 7.1572 < 9.3043] w=0.0554 to align # Constraint # added constraint: constraint((T0342)C144.CB, (T0342)Y156.CB) [> 4.4126 = 7.3543 < 9.5606] w=0.0554 to align # Constraint # added constraint: constraint((T0342)D48.CB, (T0342)I68.CB) [> 3.2044 = 5.3406 < 6.9428] w=0.0551 to align # Constraint # added constraint: constraint((T0342)V83.CB, (T0342)Y125.CB) [> 4.3943 = 7.3239 < 9.5211] w=0.0545 to align # Constraint # added constraint: constraint((T0342)G81.CA, (T0342)M127.CB) [> 3.5137 = 5.8561 < 7.6130] w=0.0545 to align # Constraint # added constraint: constraint((T0342)S24.CB, (T0342)S56.CB) [> 3.6370 = 6.0616 < 7.8801] w=0.0544 to align # Constraint # added constraint: constraint((T0342)G67.CA, (T0342)L126.CB) [> 3.5007 = 5.8346 < 7.5849] w=0.0543 to align # Constraint # added constraint: constraint((T0342)L160.CB, (T0342)V172.CB) [> 3.5482 = 5.9137 < 7.6878] w=0.0541 to align # Constraint # added constraint: constraint((T0342)S24.CB, (T0342)P36.CB) [> 3.7654 = 6.2756 < 8.1583] w=0.0541 to align # Constraint # added constraint: constraint((T0342)E14.CB, (T0342)P36.CB) [> 4.3607 = 7.2679 < 9.4482] w=0.0539 to align # Constraint # added constraint: constraint((T0342)G66.CA, (T0342)V83.CB) [> 3.7883 = 6.3138 < 8.2079] w=0.0538 to align # Constraint # added constraint: constraint((T0342)G66.CA, (T0342)V82.CB) [> 4.1984 = 6.9973 < 9.0965] w=0.0538 to align # Constraint # added constraint: constraint((T0342)G23.CA, (T0342)D52.CB) [> 3.6678 = 6.1130 < 7.9469] w=0.0537 to align # Constraint # added constraint: constraint((T0342)C122.CB, (T0342)G146.CA) [> 3.9754 = 6.6256 < 8.6133] w=0.0535 to align # Constraint # added constraint: constraint((T0342)V79.CB, (T0342)L152.CB) [> 3.9583 = 6.5972 < 8.5764] w=0.0528 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)E109.CB) [> 4.2594 = 7.0989 < 9.2286] w=0.0527 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)S102.CB) [> 3.5695 = 5.9492 < 7.7340] w=0.0526 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)A147.CB) [> 3.6383 = 6.0638 < 7.8830] w=0.0523 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)G146.CA) [> 3.4811 = 5.8018 < 7.5423] w=0.0523 to align # Constraint # added constraint: constraint((T0342)G23.CA, (T0342)A44.CB) [> 4.5699 = 7.6165 < 9.9015] w=0.0523 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)A147.CB) [> 4.6785 = 7.7976 < 10.1368] w=0.0523 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)G146.CA) [> 2.8837 = 4.8061 < 6.2479] w=0.0523 to align # Constraint # added constraint: constraint((T0342)Q57.CB, (T0342)I71.CB) [> 3.0467 = 5.0778 < 6.6012] w=0.0516 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)W84.CB) [> 4.6224 = 7.7040 < 10.0152] w=0.0514 to align # Constraint # added constraint: constraint((T0342)L152.CB, (T0342)S173.CB) [> 3.6358 = 6.0597 < 7.8776] w=0.0514 to align # Constraint # added constraint: constraint((T0342)V79.CB, (T0342)V110.CB) [> 3.5558 = 5.9263 < 7.7042] w=0.0514 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)W84.CB) [> 4.1754 = 6.9591 < 9.0468] w=0.0514 to align # Constraint # added constraint: constraint((T0342)V9.CB, (T0342)F41.CB) [> 4.2139 = 7.0232 < 9.1302] w=0.0512 to align # Constraint # added constraint: constraint((T0342)T10.CB, (T0342)A38.CB) [> 4.7140 = 7.8567 < 10.2138] w=0.0512 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)G67.CA) [> 4.7017 = 7.8361 < 10.1869] w=0.0512 to align # Constraint # added constraint: constraint((T0342)C144.CB, (T0342)I176.CB) [> 4.4394 = 7.3989 < 9.6186] w=0.0512 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)V83.CB) [> 4.4067 = 7.3444 < 9.5477] w=0.0510 to align # Constraint # added constraint: constraint((T0342)G146.CA, (T0342)I163.CB) [> 3.5756 = 5.9594 < 7.7471] w=0.0506 to align # Constraint # added constraint: constraint((T0342)L33.CB, (T0342)C42.CB) [> 3.2802 = 5.4671 < 7.1072] w=0.0505 to align # Constraint # added constraint: constraint((T0342)S136.CB, (T0342)L154.CB) [> 3.9243 = 6.5405 < 8.5026] w=0.0505 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)T70.CB) [> 3.4053 = 5.6755 < 7.3782] w=0.0504 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)G81.CA) [> 3.8912 = 6.4854 < 8.4310] w=0.0502 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)G67.CA) [> 3.6983 = 6.1638 < 8.0130] w=0.0499 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)D52.CB) [> 3.7645 = 6.2741 < 8.1564] w=0.0485 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)D52.CB) [> 3.7150 = 6.1917 < 8.0492] w=0.0485 to align # Constraint # added constraint: constraint((T0342)V100.CB, (T0342)M127.CB) [> 3.3220 = 5.5367 < 7.1977] w=0.0480 to align # Constraint # added constraint: constraint((T0342)S124.CB, (T0342)Q157.CB) [> 4.0962 = 6.8270 < 8.8751] w=0.0469 to align # Constraint # added constraint: constraint((T0342)L26.CB, (T0342)K50.CB) [> 3.5534 = 5.9224 < 7.6991] w=0.0458 to align # Constraint # added constraint: constraint((T0342)C6.CB, (T0342)L18.CB) [> 4.4797 = 7.4661 < 9.7059] w=0.0456 to align # Constraint # added constraint: constraint((T0342)C122.CB, (T0342)Y168.CB) [> 4.7115 = 7.8525 < 10.2082] w=0.0456 to align # Constraint # added constraint: constraint((T0342)I71.CB, (T0342)L160.CB) [> 4.7764 = 7.9607 < 10.3489] w=0.0455 to align # Constraint # added constraint: constraint((T0342)N25.CB, (T0342)D48.CB) [> 3.0146 = 5.0243 < 6.5316] w=0.0447 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)C122.CB) [> 4.0703 = 6.7839 < 8.8190] w=0.0447 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)W84.CB) [> 2.3680 = 3.9467 < 5.1307] w=0.0447 to align # Constraint # added constraint: constraint((T0342)L18.CB, (T0342)V43.CB) [> 4.4982 = 7.4970 < 9.7461] w=0.0447 to align # Constraint # added constraint: constraint((T0342)S61.CB, (T0342)W84.CB) [> 3.8941 = 6.4902 < 8.4373] w=0.0447 to align # Constraint # added constraint: constraint((T0342)D48.CB, (T0342)L126.CB) [> 3.8819 = 6.4699 < 8.4108] w=0.0447 to align # Constraint # added constraint: constraint((T0342)D48.CB, (T0342)G81.CA) [> 4.2196 = 7.0327 < 9.1425] w=0.0447 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)W84.CB) [> 3.6988 = 6.1647 < 8.0141] w=0.0447 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)V107.CB) [> 4.4241 = 7.3735 < 9.5856] w=0.0328 to align # Constraint # added constraint: constraint((T0342)G67.CA, (T0342)E109.CB) [> 3.8243 = 6.3738 < 8.2859] w=0.0326 to align # Constraint # added constraint: constraint((T0342)I68.CB, (T0342)E109.CB) [> 2.6089 = 4.3481 < 5.6526] w=0.0326 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)E109.CB) [> 4.0475 = 6.7459 < 8.7696] w=0.0326 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)N166.CB) [> 3.8705 = 6.4509 < 8.3862] w=0.0321 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)N166.CB) [> 4.2544 = 7.0907 < 9.2179] w=0.0321 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)R123.CB) [> 4.5488 = 7.5813 < 9.8556] w=0.0321 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)R123.CB) [> 4.3135 = 7.1891 < 9.3458] w=0.0321 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)L126.CB) [> 4.5278 = 7.5463 < 9.8102] w=0.0321 to align # Constraint # added constraint: constraint((T0342)S61.CB, (T0342)M127.CB) [> 4.7215 = 7.8692 < 10.2300] w=0.0321 to align # Constraint # added constraint: constraint((T0342)T60.CB, (T0342)Y130.CB) [> 4.7824 = 7.9707 < 10.3619] w=0.0321 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)M127.CB) [> 4.7210 = 7.8683 < 10.2287] w=0.0321 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)E109.CB) [> 2.8276 = 4.7127 < 6.1265] w=0.0320 to align # Constraint # added constraint: constraint((T0342)L126.CB, (T0342)A147.CB) [> 3.7318 = 6.2197 < 8.0857] w=0.0319 to align # Constraint # added constraint: constraint((T0342)V79.CB, (T0342)V107.CB) [> 3.5883 = 5.9804 < 7.7745] w=0.0317 to align # Constraint # added constraint: constraint((T0342)V82.CB, (T0342)Y125.CB) [> 3.3055 = 5.5092 < 7.1619] w=0.0317 to align # Constraint # added constraint: constraint((T0342)W84.CB, (T0342)R123.CB) [> 3.2296 = 5.3826 < 6.9974] w=0.0317 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)V79.CB) [> 4.3309 = 7.2181 < 9.3836] w=0.0310 to align # Constraint # added constraint: constraint((T0342)M145.CB, (T0342)Y168.CB) [> 3.2068 = 5.3447 < 6.9481] w=0.0287 to align # Constraint # added constraint: constraint((T0342)K148.CB, (T0342)Y168.CB) [> 2.6616 = 4.4361 < 5.7669] w=0.0287 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)E109.CB) [> 4.4461 = 7.4102 < 9.6333] w=0.0285 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)E109.CB) [> 4.5261 = 7.5435 < 9.8065] w=0.0285 to align # Constraint # added constraint: constraint((T0342)V9.CB, (T0342)P36.CB) [> 4.2698 = 7.1163 < 9.2512] w=0.0278 to align # Constraint # added constraint: constraint((T0342)V9.CB, (T0342)N35.CB) [> 2.0777 = 3.4629 < 4.5017] w=0.0278 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)V110.CB) [> 4.3978 = 7.3297 < 9.5286] w=0.0278 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)E109.CB) [> 4.2973 = 7.1621 < 9.3107] w=0.0278 to align # Constraint # added constraint: constraint((T0342)G5.CA, (T0342)Y19.CB) [> 4.6152 = 7.6920 < 9.9997] w=0.0278 to align # Constraint # added constraint: constraint((T0342)C6.CB, (T0342)Y19.CB) [> 3.1207 = 5.2012 < 6.7616] w=0.0278 to align # Constraint # added constraint: constraint((T0342)C6.CB, (T0342)S37.CB) [> 4.5998 = 7.6663 < 9.9663] w=0.0278 to align # Constraint # added constraint: constraint((T0342)C6.CB, (T0342)I68.CB) [> 3.5443 = 5.9071 < 7.6793] w=0.0278 to align # Constraint # added constraint: constraint((T0342)C6.CB, (T0342)T70.CB) [> 4.3688 = 7.2813 < 9.4657] w=0.0278 to align # Constraint # added constraint: constraint((T0342)K7.CB, (T0342)F17.CB) [> 3.0219 = 5.0365 < 6.5474] w=0.0278 to align # Constraint # added constraint: constraint((T0342)D8.CB, (T0342)F17.CB) [> 2.0799 = 3.4665 < 4.5064] w=0.0278 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)C122.CB) [> 4.5132 = 7.5220 < 9.7786] w=0.0278 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)R123.CB) [> 2.5962 = 4.3270 < 5.6252] w=0.0278 to align # Constraint # added constraint: constraint((T0342)G81.CA, (T0342)C122.CB) [> 3.4203 = 5.7005 < 7.4106] w=0.0278 to align # Constraint # added constraint: constraint((T0342)G81.CA, (T0342)R123.CB) [> 3.7620 = 6.2700 < 8.1511] w=0.0278 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)E109.CB) [> 2.5133 = 4.1887 < 5.4454] w=0.0278 to align # Constraint # added constraint: constraint((T0342)T60.CB, (T0342)G81.CA) [> 3.2648 = 5.4413 < 7.0737] w=0.0278 to align # Constraint # added constraint: constraint((T0342)A69.CB, (T0342)R123.CB) [> 4.3241 = 7.2068 < 9.3688] w=0.0278 to align # Constraint # added constraint: constraint((T0342)I68.CB, (T0342)Y125.CB) [> 3.1017 = 5.1695 < 6.7204] w=0.0278 to align # Constraint # added constraint: constraint((T0342)I68.CB, (T0342)S124.CB) [> 4.4935 = 7.4892 < 9.7360] w=0.0278 to align # Constraint # added constraint: constraint((T0342)G67.CA, (T0342)S124.CB) [> 4.4034 = 7.3390 < 9.5407] w=0.0278 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)V79.CB) [> 3.3394 = 5.5656 < 7.2353] w=0.0278 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)V79.CB) [> 4.2494 = 7.0823 < 9.2069] w=0.0278 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)T63.CB) [> 3.1069 = 5.1782 < 6.7317] w=0.0278 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)T60.CB) [> 3.6253 = 6.0422 < 7.8548] w=0.0278 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)F41.CB) [> 4.4522 = 7.4203 < 9.6464] w=0.0278 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)C42.CB) [> 3.2351 = 5.3918 < 7.0093] w=0.0278 to align # Constraint # added constraint: constraint((T0342)Y22.CB, (T0342)V43.CB) [> 4.1776 = 6.9626 < 9.0514] w=0.0278 to align # Constraint # added constraint: constraint((T0342)N25.CB, (T0342)F41.CB) [> 4.0851 = 6.8084 < 8.8510] w=0.0278 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)M127.CB) [> 3.3076 = 5.5127 < 7.1665] w=0.0276 to align # Constraint # added constraint: constraint((T0342)F41.CB, (T0342)L126.CB) [> 4.7063 = 7.8438 < 10.1969] w=0.0276 to align # Constraint # added constraint: constraint((T0342)T60.CB, (T0342)I71.CB) [> 4.6327 = 7.7211 < 10.0375] w=0.0276 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)V110.CB) [> 3.8750 = 6.4583 < 8.3958] w=0.0276 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)C122.CB) [> 3.7241 = 6.2069 < 8.0689] w=0.0271 to align # Constraint # added constraint: constraint((T0342)E109.CB, (T0342)L154.CB) [> 3.6626 = 6.1043 < 7.9355] w=0.0264 to align # Constraint # added constraint: constraint((T0342)V110.CB, (T0342)M127.CB) [> 4.6766 = 7.7944 < 10.1327] w=0.0264 to align # Constraint # added constraint: constraint((T0342)I68.CB, (T0342)V110.CB) [> 4.7696 = 7.9494 < 10.3342] w=0.0261 to align # Constraint # added constraint: constraint((T0342)C42.CB, (T0342)V110.CB) [> 4.1102 = 6.8503 < 8.9054] w=0.0253 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)V110.CB) [> 4.1789 = 6.9648 < 9.0543] w=0.0253 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)V110.CB) [> 3.3222 = 5.5369 < 7.1980] w=0.0253 to align # Constraint # added constraint: constraint((T0342)L46.CB, (T0342)E109.CB) [> 4.6724 = 7.7874 < 10.1236] w=0.0253 to align # Constraint # added constraint: constraint((T0342)G67.CA, (T0342)G81.CA) [> 4.5467 = 7.5778 < 9.8511] w=0.0253 to align # Constraint # added constraint: constraint((T0342)D48.CB, (T0342)V79.CB) [> 1.6181 = 2.6968 < 3.5058] w=0.0253 to align # Constraint # added constraint: constraint((T0342)T10.CB, (T0342)S124.CB) [> 3.8130 = 6.3550 < 8.2614] w=0.0240 to align # Constraint # added constraint: constraint((T0342)W84.CB, (T0342)M127.CB) [> 4.5177 = 7.5295 < 9.7883] w=0.0228 to align # Constraint # added constraint: constraint((T0342)L51.CB, (T0342)W84.CB) [> 2.3203 = 3.8671 < 5.0273] w=0.0223 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)V83.CB) [> 3.6597 = 6.0995 < 7.9293] w=0.0223 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)C122.CB) [> 4.2161 = 7.0268 < 9.1348] w=0.0223 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)R123.CB) [> 4.6833 = 7.8055 < 10.1471] w=0.0223 to align # Constraint # added constraint: constraint((T0342)D52.CB, (T0342)S124.CB) [> 2.5160 = 4.1933 < 5.4513] w=0.0223 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)V82.CB) [> 2.6243 = 4.3738 < 5.6859] w=0.0223 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)V83.CB) [> 4.1152 = 6.8586 < 8.9162] w=0.0223 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)W84.CB) [> 3.7390 = 6.2316 < 8.1011] w=0.0223 to align # Constraint # added constraint: constraint((T0342)F53.CB, (T0342)S124.CB) [> 3.5607 = 5.9345 < 7.7149] w=0.0223 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)L51.CB) [> 4.4760 = 7.4600 < 9.6980] w=0.0223 to align # Constraint # added constraint: constraint((T0342)Y19.CB, (T0342)D52.CB) [> 3.9564 = 6.5939 < 8.5721] w=0.0223 to align # Constraint # added constraint: constraint((T0342)F20.CB, (T0342)L51.CB) [> 2.6602 = 4.4337 < 5.7638] w=0.0223 to align # Constraint # added constraint: constraint((T0342)A44.CB, (T0342)V107.CB) [> 4.2958 = 7.1597 < 9.3076] w=0.0064 to align # Constraint # added constraint: constraint((T0342)T70.CB, (T0342)V107.CB) [> 3.3334 = 5.5557 < 7.2224] w=0.0064 to align # Constraint # added constraint: constraint((T0342)V43.CB, (T0342)V107.CB) [> 3.3812 = 5.6353 < 7.3260] w=0.0032 to align # Constraint # added constraint: constraint((T0342)K50.CB, (T0342)E109.CB) [> 3.6242 = 6.0403 < 7.8523] w=0.0032 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0342/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0342/decoys/ # ReadConformPDB reading from PDB file chimera-19-1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 170 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-22-2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-22-shifted.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-23-shifted4-2.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-35-2-2.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-35-2.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-39-1.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1v30-24-shifted.pdb.gz looking for chain 'A' model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1v30-24-shifted # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1v30-24-shifted3.pdb.gz looking for chain 'A' model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1v30-24-shifted3 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1v30-24-shifted4-repack.pdb.gz looking for chain 'A' model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1v30-24-shifted4-repack # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1v30-24-shifted4.pdb.gz looking for chain 'A' model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1v30-24-shifted4 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1v30-chimera-22-2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1v30-chimera-22-2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 298, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 300, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 302, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 304, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 362, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 364, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 368, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 Skipped atom 298, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 300, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 302, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 304, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 362, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 364, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 368, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 16 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 17 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 17 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 WARNING: atom 1 has residue number 9 < previous residue 188 in servers/NN_PUT_lab_TS1.pdb.gz # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 WARNING: atom 1 has residue number 2 < previous residue 188 in servers/POMYSL_TS4.pdb.gz # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 44 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 WARNING: atom 1 has residue number 9 < previous residue 188 in servers/nFOLD_TS1.pdb.gz # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 WARNING: atom 1 has residue number 14 < previous residue 188 in servers/nFOLD_TS2.pdb.gz # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 151 in servers/nFOLD_TS3.pdb.gz WARNING: atom 1 has residue number 9 < previous residue 188 in servers/nFOLD_TS3.pdb.gz # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0342 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 266 model score 0.2594 model score 0.2548 model score 0.2452 model score 0.2718 model score 0.2158 model score 0.2150 model score 0.2395 model score 0.2893 model score 0.2777 model score 0.2679 model score 0.2749 model score 0.2548 model score 1.6244 model score 0.8342 model score 1.4142 model score 1.0022 model score 1.5833 model score 0.3616 model score 0.3571 model score 0.3572 model score 1.9240 model score 1.7377 model score 2.0656 model score 1.9931 model score 0.2777 model score 0.7703 model score 0.2230 model score 0.4953 model score 0.6727 model score 0.9466 model score 0.9829 model score 1.0514 model score 0.9663 model score 0.9276 model score 0.2445 model score 0.6232 model score 2.0441 model score 0.4732 model score 0.2791 model score 0.3164 model score 0.2425 model score 0.2516 model score 0.2433 model score 0.2527 model score 0.2882 model score 1.1891 model score 1.3664 model score 1.4217 model score 1.2761 model score 1.2744 model score 1.2757 model score 1.2760 model score 1.2757 model score 0.2577 model score 0.2474 model score 0.3309 model score 0.2499 model score 0.3447 model score 0.2696 model score 0.3820 model score 0.2516 model score 0.2425 model score 0.2474 model score 0.2301 model score 0.4474 model score 0.3685 model score 0.7163 model score 0.8585 model score 1.2749 model score 1.2735 model score 1.2737 model score 1.2737 model score 1.2788 model score 1.2749 model score 1.2735 model score 1.2737 model score 1.2737 model score 1.2788 model score 2.3000 model score 2.4414 model score 2.3112 model score 2.2244 model score 2.4431 model score 0.2492 model score 0.5537 model score 0.8042 model score 2.1378 model score 1.9496 model score 1.2749 model score 1.2736 model score 1.2735 model score 1.2783 model score 1.2782 model score 0.2833 model score 0.3507 model score 0.4025 model score 0.3820 model score 1.8913 model score 1.8081 model score 2.4415 model score 0.2517 model score 0.2426 model score 0.2734 model score 0.2110 model score 0.5315 model score 0.2846 model score 0.2846 model score 0.2625 model score 1.3398 model score 1.8546 model score 1.5768 model score 1.4562 model score 1.4611 model score 0.3120 model score 0.5239 model score 1.1448 model score 0.9732 model score 1.1582 model score 1.2745 model score 1.2787 model score 1.2505 model score 0.5587 model score 1.6532 model score 1.8377 model score 1.6647 model score 1.7206 model score 1.9141 model score 1.3501 model score 0.5587 model score 0.2397 model score 0.2333 model score 0.2324 model score 0.2287 model score 0.2491 model score 0.2579 model score 2.1536 model score 2.3489 model score 1.6508 model score 1.5354 model score 1.9900 model score 0.3086 model score 0.3119 model score 0.3111 model score 0.3114 model score 0.3098 model score 0.3112 model score 0.3235 model score 0.5576 model score 0.6949 model score 0.3184 model score 0.2889 model score 0.2994 model score 0.2932 model score 0.5034 model score 0.4554 model score 0.4329 model score 0.3133 model score 0.3199 model score 0.3178 model score 0.3132 model score 0.3103 model score 0.2730 model score 0.3853 model score 0.2889 model score 0.2685 model score 0.4732 model score 0.2795 model score 0.2672 model score 0.3454 model score 0.3014 model score 0.6025 model score 0.3449 model score 0.2793 model score 0.9626 model score 0.4864 model score 0.5338 model score 0.3169 model score 0.2572 model score 0.9780 model score 0.4743 model score 0.5185 model score 0.2698 model score 0.3651 model score 0.3410 model score 0.3688 model score 0.2730 model score 0.5131 model score 0.4825 model score 0.4842 model score 0.5260 model score 0.4999 model score 1.2749 model score 1.2770 model score 1.2736 model score 1.2737 model score 1.2749 model score 1.2735 model score 1.2737 model score 1.2737 model score 0.2584 model score 0.1999 model score 0.2307 model score 0.2899 model score 0.5009 model score 0.3014 model score 0.8432 model score 0.5672 model score 0.4038 model score 1.3304 model score 0.3941 model score 0.3196 model score 0.3150 model score 0.4348 model score 1.2366 model score 0.2957 model score 0.3857 model score 0.3245 model score 0.3767 model score 1.2168 model score 1.2749 model score 1.2737 model score 1.2737 model score 1.2737 model score 0.2030 model score 1.2749 model score 1.2737 model score 1.2737 model score 1.2737 model score 0.2161 model score 0.2202 model score 0.1985 model score 0.2178 model score 0.2302 model score 0.2518 model score 0.2326 model score 1.2771 model score 1.2771 model score 1.2773 model score 1.2771 model score 1.2771 model score 1.2737 model score 1.2737 model score 1.2735 model score 2.0879 model score 1.9834 model score 1.1030 model score 1.7493 model score 1.9392 model score 1.5365 model score 1.0604 model score 1.0969 model score 1.0220 model score 1.4681 model score 0.2924 model score 0.3235 model score 0.8645 model score 0.2809 model score 1.0130 model score 0.2345 model score 0.2579 model score 0.7581 model score 0.5522 model score 2.5369 model score 1.9700 model score 0.8156 model score 0.2816 weight: 0.9766 eval: 0.2594 min: 0.1985 max: 2.5369 weight: 0.9783 eval: 0.2548 min: 0.1985 max: 2.5369 weight: 0.9820 eval: 0.2452 min: 0.1985 max: 2.5369 weight: 0.9718 eval: 0.2718 min: 0.1985 max: 2.5369 weight: 0.9933 eval: 0.2158 min: 0.1985 max: 2.5369 weight: 0.9936 eval: 0.2150 min: 0.1985 max: 2.5369 weight: 0.9842 eval: 0.2395 min: 0.1985 max: 2.5369 weight: 0.9650 eval: 0.2893 min: 0.1985 max: 2.5369 weight: 0.9695 eval: 0.2777 min: 0.1985 max: 2.5369 weight: 0.9733 eval: 0.2679 min: 0.1985 max: 2.5369 weight: 0.9706 eval: 0.2749 min: 0.1985 max: 2.5369 weight: 0.9783 eval: 0.2548 min: 0.1985 max: 2.5369 weight: 0.4512 eval: 1.6244 min: 0.1985 max: 2.5369 weight: 0.7553 eval: 0.8342 min: 0.1985 max: 2.5369 weight: 0.5321 eval: 1.4142 min: 0.1985 max: 2.5369 weight: 0.6907 eval: 1.0022 min: 0.1985 max: 2.5369 weight: 0.4670 eval: 1.5833 min: 0.1985 max: 2.5369 weight: 0.9372 eval: 0.3616 min: 0.1985 max: 2.5369 weight: 0.9390 eval: 0.3571 min: 0.1985 max: 2.5369 weight: 0.9389 eval: 0.3572 min: 0.1985 max: 2.5369 weight: 0.3359 eval: 1.9240 min: 0.1985 max: 2.5369 weight: 0.4076 eval: 1.7377 min: 0.1985 max: 2.5369 weight: 0.2814 eval: 2.0656 min: 0.1985 max: 2.5369 weight: 0.3093 eval: 1.9931 min: 0.1985 max: 2.5369 weight: 0.9695 eval: 0.2777 min: 0.1985 max: 2.5369 weight: 0.7799 eval: 0.7703 min: 0.1985 max: 2.5369 weight: 0.9906 eval: 0.2230 min: 0.1985 max: 2.5369 weight: 0.8858 eval: 0.4953 min: 0.1985 max: 2.5369 weight: 0.8175 eval: 0.6727 min: 0.1985 max: 2.5369 weight: 0.7121 eval: 0.9466 min: 0.1985 max: 2.5369 weight: 0.6981 eval: 0.9829 min: 0.1985 max: 2.5369 weight: 0.6717 eval: 1.0514 min: 0.1985 max: 2.5369 weight: 0.7045 eval: 0.9663 min: 0.1985 max: 2.5369 weight: 0.7194 eval: 0.9276 min: 0.1985 max: 2.5369 weight: 0.9823 eval: 0.2445 min: 0.1985 max: 2.5369 weight: 0.8365 eval: 0.6232 min: 0.1985 max: 2.5369 weight: 0.2897 eval: 2.0441 min: 0.1985 max: 2.5369 weight: 0.8943 eval: 0.4732 min: 0.1985 max: 2.5369 weight: 0.9690 eval: 0.2791 min: 0.1985 max: 2.5369 weight: 0.9546 eval: 0.3164 min: 0.1985 max: 2.5369 weight: 0.9831 eval: 0.2425 min: 0.1985 max: 2.5369 weight: 0.9795 eval: 0.2516 min: 0.1985 max: 2.5369 weight: 0.9828 eval: 0.2433 min: 0.1985 max: 2.5369 weight: 0.9791 eval: 0.2527 min: 0.1985 max: 2.5369 weight: 0.9655 eval: 0.2882 min: 0.1985 max: 2.5369 weight: 0.6187 eval: 1.1891 min: 0.1985 max: 2.5369 weight: 0.5505 eval: 1.3664 min: 0.1985 max: 2.5369 weight: 0.5292 eval: 1.4217 min: 0.1985 max: 2.5369 weight: 0.5853 eval: 1.2761 min: 0.1985 max: 2.5369 weight: 0.5859 eval: 1.2744 min: 0.1985 max: 2.5369 weight: 0.5854 eval: 1.2757 min: 0.1985 max: 2.5369 weight: 0.5853 eval: 1.2760 min: 0.1985 max: 2.5369 weight: 0.5854 eval: 1.2757 min: 0.1985 max: 2.5369 weight: 0.9772 eval: 0.2577 min: 0.1985 max: 2.5369 weight: 0.9812 eval: 0.2474 min: 0.1985 max: 2.5369 weight: 0.9490 eval: 0.3309 min: 0.1985 max: 2.5369 weight: 0.9802 eval: 0.2499 min: 0.1985 max: 2.5369 weight: 0.9437 eval: 0.3447 min: 0.1985 max: 2.5369 weight: 0.9726 eval: 0.2696 min: 0.1985 max: 2.5369 weight: 0.9294 eval: 0.3820 min: 0.1985 max: 2.5369 weight: 0.9795 eval: 0.2516 min: 0.1985 max: 2.5369 weight: 0.9831 eval: 0.2425 min: 0.1985 max: 2.5369 weight: 0.9812 eval: 0.2474 min: 0.1985 max: 2.5369 weight: 0.9878 eval: 0.2301 min: 0.1985 max: 2.5369 weight: 0.9042 eval: 0.4474 min: 0.1985 max: 2.5369 weight: 0.9346 eval: 0.3685 min: 0.1985 max: 2.5369 weight: 0.8007 eval: 0.7163 min: 0.1985 max: 2.5369 weight: 0.7460 eval: 0.8585 min: 0.1985 max: 2.5369 weight: 0.5857 eval: 1.2749 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2735 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.5842 eval: 1.2788 min: 0.1985 max: 2.5369 weight: 0.5857 eval: 1.2749 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2735 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.5842 eval: 1.2788 min: 0.1985 max: 2.5369 weight: 0.1912 eval: 2.3000 min: 0.1985 max: 2.5369 weight: 0.1367 eval: 2.4414 min: 0.1985 max: 2.5369 weight: 0.1868 eval: 2.3112 min: 0.1985 max: 2.5369 weight: 0.2203 eval: 2.2244 min: 0.1985 max: 2.5369 weight: 0.1361 eval: 2.4431 min: 0.1985 max: 2.5369 weight: 0.9805 eval: 0.2492 min: 0.1985 max: 2.5369 weight: 0.8633 eval: 0.5537 min: 0.1985 max: 2.5369 weight: 0.7669 eval: 0.8042 min: 0.1985 max: 2.5369 weight: 0.2536 eval: 2.1378 min: 0.1985 max: 2.5369 weight: 0.3260 eval: 1.9496 min: 0.1985 max: 2.5369 weight: 0.5857 eval: 1.2749 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2736 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2735 min: 0.1985 max: 2.5369 weight: 0.5844 eval: 1.2783 min: 0.1985 max: 2.5369 weight: 0.5844 eval: 1.2782 min: 0.1985 max: 2.5369 weight: 0.9674 eval: 0.2833 min: 0.1985 max: 2.5369 weight: 0.9414 eval: 0.3507 min: 0.1985 max: 2.5369 weight: 0.9215 eval: 0.4025 min: 0.1985 max: 2.5369 weight: 0.9294 eval: 0.3820 min: 0.1985 max: 2.5369 weight: 0.3485 eval: 1.8913 min: 0.1985 max: 2.5369 weight: 0.3805 eval: 1.8081 min: 0.1985 max: 2.5369 weight: 0.1367 eval: 2.4415 min: 0.1985 max: 2.5369 weight: 0.9795 eval: 0.2517 min: 0.1985 max: 2.5369 weight: 0.9830 eval: 0.2426 min: 0.1985 max: 2.5369 weight: 0.9712 eval: 0.2734 min: 0.1985 max: 2.5369 weight: 0.9952 eval: 0.2110 min: 0.1985 max: 2.5369 weight: 0.8718 eval: 0.5315 min: 0.1985 max: 2.5369 weight: 0.9669 eval: 0.2846 min: 0.1985 max: 2.5369 weight: 0.9669 eval: 0.2846 min: 0.1985 max: 2.5369 weight: 0.9754 eval: 0.2625 min: 0.1985 max: 2.5369 weight: 0.5607 eval: 1.3398 min: 0.1985 max: 2.5369 weight: 0.3626 eval: 1.8546 min: 0.1985 max: 2.5369 weight: 0.4695 eval: 1.5768 min: 0.1985 max: 2.5369 weight: 0.5159 eval: 1.4562 min: 0.1985 max: 2.5369 weight: 0.5140 eval: 1.4611 min: 0.1985 max: 2.5369 weight: 0.9563 eval: 0.3120 min: 0.1985 max: 2.5369 weight: 0.8747 eval: 0.5239 min: 0.1985 max: 2.5369 weight: 0.6358 eval: 1.1448 min: 0.1985 max: 2.5369 weight: 0.7018 eval: 0.9732 min: 0.1985 max: 2.5369 weight: 0.6306 eval: 1.1582 min: 0.1985 max: 2.5369 weight: 0.5859 eval: 1.2745 min: 0.1985 max: 2.5369 weight: 0.5843 eval: 1.2787 min: 0.1985 max: 2.5369 weight: 0.5951 eval: 1.2505 min: 0.1985 max: 2.5369 weight: 0.8614 eval: 0.5587 min: 0.1985 max: 2.5369 weight: 0.4401 eval: 1.6532 min: 0.1985 max: 2.5369 weight: 0.3691 eval: 1.8377 min: 0.1985 max: 2.5369 weight: 0.4357 eval: 1.6647 min: 0.1985 max: 2.5369 weight: 0.4142 eval: 1.7206 min: 0.1985 max: 2.5369 weight: 0.3397 eval: 1.9141 min: 0.1985 max: 2.5369 weight: 0.5568 eval: 1.3501 min: 0.1985 max: 2.5369 weight: 0.8614 eval: 0.5587 min: 0.1985 max: 2.5369 weight: 0.9841 eval: 0.2397 min: 0.1985 max: 2.5369 weight: 0.9866 eval: 0.2333 min: 0.1985 max: 2.5369 weight: 0.9869 eval: 0.2324 min: 0.1985 max: 2.5369 weight: 0.9884 eval: 0.2287 min: 0.1985 max: 2.5369 weight: 0.9805 eval: 0.2491 min: 0.1985 max: 2.5369 weight: 0.9771 eval: 0.2579 min: 0.1985 max: 2.5369 weight: 0.2475 eval: 2.1536 min: 0.1985 max: 2.5369 weight: 0.1723 eval: 2.3489 min: 0.1985 max: 2.5369 weight: 0.4410 eval: 1.6508 min: 0.1985 max: 2.5369 weight: 0.4855 eval: 1.5354 min: 0.1985 max: 2.5369 weight: 0.3105 eval: 1.9900 min: 0.1985 max: 2.5369 weight: 0.9576 eval: 0.3086 min: 0.1985 max: 2.5369 weight: 0.9564 eval: 0.3119 min: 0.1985 max: 2.5369 weight: 0.9566 eval: 0.3111 min: 0.1985 max: 2.5369 weight: 0.9566 eval: 0.3114 min: 0.1985 max: 2.5369 weight: 0.9572 eval: 0.3098 min: 0.1985 max: 2.5369 weight: 0.9566 eval: 0.3112 min: 0.1985 max: 2.5369 weight: 0.9519 eval: 0.3235 min: 0.1985 max: 2.5369 weight: 0.8618 eval: 0.5576 min: 0.1985 max: 2.5369 weight: 0.8089 eval: 0.6949 min: 0.1985 max: 2.5369 weight: 0.9539 eval: 0.3184 min: 0.1985 max: 2.5369 weight: 0.9652 eval: 0.2889 min: 0.1985 max: 2.5369 weight: 0.9612 eval: 0.2994 min: 0.1985 max: 2.5369 weight: 0.9635 eval: 0.2932 min: 0.1985 max: 2.5369 weight: 0.8827 eval: 0.5034 min: 0.1985 max: 2.5369 weight: 0.9011 eval: 0.4554 min: 0.1985 max: 2.5369 weight: 0.9098 eval: 0.4329 min: 0.1985 max: 2.5369 weight: 0.9558 eval: 0.3133 min: 0.1985 max: 2.5369 weight: 0.9533 eval: 0.3199 min: 0.1985 max: 2.5369 weight: 0.9541 eval: 0.3178 min: 0.1985 max: 2.5369 weight: 0.9558 eval: 0.3132 min: 0.1985 max: 2.5369 weight: 0.9569 eval: 0.3103 min: 0.1985 max: 2.5369 weight: 0.9713 eval: 0.2730 min: 0.1985 max: 2.5369 weight: 0.9281 eval: 0.3853 min: 0.1985 max: 2.5369 weight: 0.9652 eval: 0.2889 min: 0.1985 max: 2.5369 weight: 0.9730 eval: 0.2685 min: 0.1985 max: 2.5369 weight: 0.8943 eval: 0.4732 min: 0.1985 max: 2.5369 weight: 0.9688 eval: 0.2795 min: 0.1985 max: 2.5369 weight: 0.9736 eval: 0.2672 min: 0.1985 max: 2.5369 weight: 0.9434 eval: 0.3454 min: 0.1985 max: 2.5369 weight: 0.9604 eval: 0.3014 min: 0.1985 max: 2.5369 weight: 0.8445 eval: 0.6025 min: 0.1985 max: 2.5369 weight: 0.9436 eval: 0.3449 min: 0.1985 max: 2.5369 weight: 0.9689 eval: 0.2793 min: 0.1985 max: 2.5369 weight: 0.7059 eval: 0.9626 min: 0.1985 max: 2.5369 weight: 0.8892 eval: 0.4864 min: 0.1985 max: 2.5369 weight: 0.8710 eval: 0.5338 min: 0.1985 max: 2.5369 weight: 0.9544 eval: 0.3169 min: 0.1985 max: 2.5369 weight: 0.9774 eval: 0.2572 min: 0.1985 max: 2.5369 weight: 0.7000 eval: 0.9780 min: 0.1985 max: 2.5369 weight: 0.8938 eval: 0.4743 min: 0.1985 max: 2.5369 weight: 0.8768 eval: 0.5185 min: 0.1985 max: 2.5369 weight: 0.9726 eval: 0.2698 min: 0.1985 max: 2.5369 weight: 0.9359 eval: 0.3651 min: 0.1985 max: 2.5369 weight: 0.9452 eval: 0.3410 min: 0.1985 max: 2.5369 weight: 0.9345 eval: 0.3688 min: 0.1985 max: 2.5369 weight: 0.9713 eval: 0.2730 min: 0.1985 max: 2.5369 weight: 0.8789 eval: 0.5131 min: 0.1985 max: 2.5369 weight: 0.8907 eval: 0.4825 min: 0.1985 max: 2.5369 weight: 0.8901 eval: 0.4842 min: 0.1985 max: 2.5369 weight: 0.8739 eval: 0.5260 min: 0.1985 max: 2.5369 weight: 0.8840 eval: 0.4999 min: 0.1985 max: 2.5369 weight: 0.5857 eval: 1.2749 min: 0.1985 max: 2.5369 weight: 0.5849 eval: 1.2770 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2736 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.5857 eval: 1.2749 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2735 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.9770 eval: 0.2584 min: 0.1985 max: 2.5369 weight: 0.9995 eval: 0.1999 min: 0.1985 max: 2.5369 weight: 0.9876 eval: 0.2307 min: 0.1985 max: 2.5369 weight: 0.9648 eval: 0.2899 min: 0.1985 max: 2.5369 weight: 0.8836 eval: 0.5009 min: 0.1985 max: 2.5369 weight: 0.9604 eval: 0.3014 min: 0.1985 max: 2.5369 weight: 0.7519 eval: 0.8432 min: 0.1985 max: 2.5369 weight: 0.8581 eval: 0.5672 min: 0.1985 max: 2.5369 weight: 0.9210 eval: 0.4038 min: 0.1985 max: 2.5369 weight: 0.5643 eval: 1.3304 min: 0.1985 max: 2.5369 weight: 0.9247 eval: 0.3941 min: 0.1985 max: 2.5369 weight: 0.9534 eval: 0.3196 min: 0.1985 max: 2.5369 weight: 0.9551 eval: 0.3150 min: 0.1985 max: 2.5369 weight: 0.9090 eval: 0.4348 min: 0.1985 max: 2.5369 weight: 0.6005 eval: 1.2366 min: 0.1985 max: 2.5369 weight: 0.9626 eval: 0.2957 min: 0.1985 max: 2.5369 weight: 0.9279 eval: 0.3857 min: 0.1985 max: 2.5369 weight: 0.9515 eval: 0.3245 min: 0.1985 max: 2.5369 weight: 0.9314 eval: 0.3767 min: 0.1985 max: 2.5369 weight: 0.6081 eval: 1.2168 min: 0.1985 max: 2.5369 weight: 0.5857 eval: 1.2749 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.9983 eval: 0.2030 min: 0.1985 max: 2.5369 weight: 0.5857 eval: 1.2749 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.9932 eval: 0.2161 min: 0.1985 max: 2.5369 weight: 0.9917 eval: 0.2202 min: 0.1985 max: 2.5369 weight: 1.0000 eval: 0.1985 min: 0.1985 max: 2.5369 weight: 0.9926 eval: 0.2178 min: 0.1985 max: 2.5369 weight: 0.9878 eval: 0.2302 min: 0.1985 max: 2.5369 weight: 0.9795 eval: 0.2518 min: 0.1985 max: 2.5369 weight: 0.9869 eval: 0.2326 min: 0.1985 max: 2.5369 weight: 0.5849 eval: 1.2771 min: 0.1985 max: 2.5369 weight: 0.5849 eval: 1.2771 min: 0.1985 max: 2.5369 weight: 0.5848 eval: 1.2773 min: 0.1985 max: 2.5369 weight: 0.5849 eval: 1.2771 min: 0.1985 max: 2.5369 weight: 0.5849 eval: 1.2771 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2737 min: 0.1985 max: 2.5369 weight: 0.5862 eval: 1.2735 min: 0.1985 max: 2.5369 weight: 0.2728 eval: 2.0879 min: 0.1985 max: 2.5369 weight: 0.3130 eval: 1.9834 min: 0.1985 max: 2.5369 weight: 0.6519 eval: 1.1030 min: 0.1985 max: 2.5369 weight: 0.4031 eval: 1.7493 min: 0.1985 max: 2.5369 weight: 0.3300 eval: 1.9392 min: 0.1985 max: 2.5369 weight: 0.4850 eval: 1.5365 min: 0.1985 max: 2.5369 weight: 0.6683 eval: 1.0604 min: 0.1985 max: 2.5369 weight: 0.6542 eval: 1.0969 min: 0.1985 max: 2.5369 weight: 0.6831 eval: 1.0220 min: 0.1985 max: 2.5369 weight: 0.5114 eval: 1.4681 min: 0.1985 max: 2.5369 weight: 0.9639 eval: 0.2924 min: 0.1985 max: 2.5369 weight: 0.9519 eval: 0.3235 min: 0.1985 max: 2.5369 weight: 0.7437 eval: 0.8645 min: 0.1985 max: 2.5369 weight: 0.9683 eval: 0.2809 min: 0.1985 max: 2.5369 weight: 0.6865 eval: 1.0130 min: 0.1985 max: 2.5369 weight: 0.9861 eval: 0.2345 min: 0.1985 max: 2.5369 weight: 0.9771 eval: 0.2579 min: 0.1985 max: 2.5369 weight: 0.7846 eval: 0.7581 min: 0.1985 max: 2.5369 weight: 0.8638 eval: 0.5522 min: 0.1985 max: 2.5369 weight: 0.1000 eval: 2.5369 min: 0.1985 max: 2.5369 weight: 0.3182 eval: 1.9700 min: 0.1985 max: 2.5369 weight: 0.7625 eval: 0.8156 min: 0.1985 max: 2.5369 weight: 0.9680 eval: 0.2816 min: 0.1985 max: 2.5369 Adding 10737 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -337.5326, CN propb: -337.5326 weights: 0.2915 constraints: 668 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 668 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 668 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 10069 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 10069 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 10737 # command: