# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0312/ # command:# Making conformation for sequence T0312 numbered 1 through 146 Created new target T0312 from T0312.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0312/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0312//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0312/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0312//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0312/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0312/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0312/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2al3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2al3A expands to /projects/compbio/data/pdb/2al3.pdb.gz 2al3A:# T0312 read from 2al3A/merged-good-all-a2m # 2al3A read from 2al3A/merged-good-all-a2m # adding 2al3A to template set # found chain 2al3A in template set T0312 5 :EFEVGKGFLLRLDYGKDLVRQIEEFLEEKGIH 2al3A 15 :LAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN # choosing archetypes in rotamer library T0312 46 :VRSAVIGYYD 2al3A 47 :PSEYDLKFQR T0312 64 :KELMEPL 2al3A 57 :TVLDLSL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3 Number of alignments=1 # 2al3A read from 2al3A/merged-good-all-a2m # found chain 2al3A in template set T0312 5 :EFEVGKGFLLRLDYGKDLVRQIEEFLEEKGIH 2al3A 15 :LAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN T0312 46 :VRSAVIGY 2al3A 47 :PSEYDLKF Number of specific fragments extracted= 2 number of extra gaps= 0 total=5 Number of alignments=2 # 2al3A read from 2al3A/merged-good-all-a2m # found chain 2al3A in template set T0312 6 :FEVGKGFLLRLDYGKDLVRQIEEFLEEKGIH 2al3A 16 :APNGRRHTVKVTPSTVLLQVLEDTCRRQDFN T0312 46 :VRSAVIGY 2al3A 47 :PSEYDLKF Number of specific fragments extracted= 2 number of extra gaps= 0 total=7 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f89A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1f89A expands to /projects/compbio/data/pdb/1f89.pdb.gz 1f89A:# T0312 read from 1f89A/merged-good-all-a2m # 1f89A read from 1f89A/merged-good-all-a2m # adding 1f89A to template set # found chain 1f89A in template set T0312 8 :VGKGFLLRL 1f89A 7 :LSQKIKVAL T0312 17 :DYGKDLVRQIEEFLEEK 1f89A 23 :PDKMANLQRAATFIERA T0312 34 :G 1f89A 44 :P T0312 36 :HAAHISAIGAV 1f89A 45 :DTKLVVLPECF T0312 49 :AVIGYYDQEKK 1f89A 68 :SEVINPKEPST T0312 72 :ILSLSGNVSM 1f89A 92 :IILVGGTIPE T0312 82 :KDSKPFCHIHVLLGKDGEVYGGHL 1f89A 104 :PKTDKIYNTSIIFNEDGKLIDKHR Number of specific fragments extracted= 7 number of extra gaps= 0 total=14 Number of alignments=4 # 1f89A read from 1f89A/merged-good-all-a2m # found chain 1f89A in template set T0312 8 :VGKGFLLRL 1f89A 7 :LSQKIKVAL T0312 17 :DYGKDLVRQIEEFLEEK 1f89A 23 :PDKMANLQRAATFIERA T0312 34 :GIHAAHISAIGAV 1f89A 43 :QPDTKLVVLPECF T0312 47 :RSA 1f89A 57 :SPY T0312 59 :KEYVKKELMEPLE 1f89A 65 :RKYSEVINPKEPS T0312 72 :ILSLSGNVSM 1f89A 92 :IILVGGTIPE T0312 82 :KDSKPFCHIHVLLGKDGEVYGGHL 1f89A 104 :PKTDKIYNTSIIFNEDGKLIDKHR T0312 106 :FSAEVF 1f89A 152 :EKSTTI T0312 112 :A 1f89A 159 :T T0312 113 :CEVFVL 1f89A 162 :GKFGVG Number of specific fragments extracted= 10 number of extra gaps= 0 total=24 Number of alignments=5 # 1f89A read from 1f89A/merged-good-all-a2m # found chain 1f89A in template set T0312 7 :EVGKGFLLR 1f89A 8 :SQKIKVALV T0312 17 :DYGKDLVRQIEEFLEEK 1f89A 23 :PDKMANLQRAATFIERA T0312 36 :HAAHISAIGAVR 1f89A 45 :DTKLVVLPECFN T0312 52 :GYYDQEKKE 1f89A 57 :SPYSTDQFR T0312 68 :EPLEILSLSGNVSMKDSKPFCHIHVLLGKDGEVYGGHL 1f89A 90 :FKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHR Number of specific fragments extracted= 5 number of extra gaps= 0 total=29 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c1yB/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1c1yB expands to /projects/compbio/data/pdb/1c1y.pdb.gz 1c1yB:Skipped atom 1478, because occupancy 0.5 <= existing 0.500 in 1c1yB Skipped atom 1480, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1482, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1484, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1486, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1488, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1490, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1492, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1494, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1496, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1498, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1581, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1583, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1585, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1587, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1589, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1591, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1593, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1595, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1597, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1599, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1609, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1611, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1613, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1615, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1617, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1619, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1629, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1631, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1633, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1635, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1637, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1639, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1641, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1643, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1984, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1986, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1988, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1990, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1992, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1994, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1996, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 1998, because occupancy 0.500 <= existing 0.500 in 1c1yB Skipped atom 2000, because occupancy 0.500 <= existing 0.500 in 1c1yB # T0312 read from 1c1yB/merged-good-all-a2m # 1c1yB read from 1c1yB/merged-good-all-a2m # adding 1c1yB to template set # found chain 1c1yB in template set T0312 6 :FEVGKGFLLRLDYGKDLVRQIEEFLEEKGIH 1c1yB 62 :LPNKQRTVVNVRNGMSLHDCLMKALKVRGLQ T0312 47 :RSA 1c1yB 94 :ECC T0312 50 :VIGYYDQEKKEYVKKELME 1c1yB 98 :VFRLLHEHKGKKARLDWNT Number of specific fragments extracted= 3 number of extra gaps= 0 total=32 Number of alignments=7 # 1c1yB read from 1c1yB/merged-good-all-a2m # found chain 1c1yB in template set T0312 5 :EFEVGKGFLLRLDYGKDLVRQIEEFLEEKGIH 1c1yB 61 :FLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQ T0312 48 :SAVIGYYDQEKKEY 1c1yB 95 :CCAVFRLLHEHKGK T0312 63 :KKELM 1c1yB 109 :KARLD Number of specific fragments extracted= 3 number of extra gaps= 0 total=35 Number of alignments=8 # 1c1yB read from 1c1yB/merged-good-all-a2m # found chain 1c1yB in template set T0312 6 :FEVGKGFLLRLDYGKDLVRQIEEFLEEKGIH 1c1yB 62 :LPNKQRTVVNVRNGMSLHDCLMKALKVRGLQ T0312 56 :QEK 1c1yB 93 :PEC T0312 113 :CEVFVLPLSGEAPERAFDEQTGLFLW 1c1yB 96 :CAVFRLLHEHKGKKARLDWNTDAASL Number of specific fragments extracted= 3 number of extra gaps= 0 total=38 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gs5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0312 read from 1gs5A/merged-good-all-a2m # 1gs5A read from 1gs5A/merged-good-all-a2m # found chain 1gs5A in training set T0312 21 :DLVRQIEEFLEEKGIH 1gs5A 83 :TANKTLLAWAKKHQIA T0312 38 :AHISAIGAVRSAVIGYYDQEKKEY 1gs5A 99 :AVGLFLGDGDSVKVTQLDEELGHV T0312 62 :VKKEL 1gs5A 124 :LAQPG T0312 67 :MEPLEILSLSG 1gs5A 139 :NGYLPVVSSIG T0312 80 :SMKDSKPFC 1gs5A 150 :VTDEGQLMN Number of specific fragments extracted= 5 number of extra gaps= 0 total=43 Number of alignments=10 # 1gs5A read from 1gs5A/merged-good-all-a2m # found chain 1gs5A in training set T0312 21 :DLVRQIEEFLEEKGIH 1gs5A 83 :TANKTLLAWAKKHQIA T0312 38 :AHISAIGAVRSAVIGYYDQEKKEYVKKEL 1gs5A 99 :AVGLFLGDGDSVKVTQLDEELGHVGLAQP T0312 67 :MEPLEILS 1gs5A 139 :NGYLPVVS T0312 77 :GNVSMKDSKPFC 1gs5A 147 :SIGVTDEGQLMN Number of specific fragments extracted= 4 number of extra gaps= 0 total=47 Number of alignments=11 # 1gs5A read from 1gs5A/merged-good-all-a2m # found chain 1gs5A in training set T0312 21 :DLVRQIEEFLEEKGIH 1gs5A 83 :TANKTLLAWAKKHQIA T0312 38 :AHISAIGAVRSAVIGYYDQEKKE 1gs5A 99 :AVGLFLGDGDSVKVTQLDEELGH T0312 77 :GNVSMK 1gs5A 123 :GLAQPG T0312 83 :DSKPFCHIHVLLGKDGEVYG 1gs5A 139 :NGYLPVVSSIGVTDEGQLMN Number of specific fragments extracted= 4 number of extra gaps= 0 total=51 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1w41A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1w41A expands to /projects/compbio/data/pdb/1w41.pdb.gz 1w41A:# T0312 read from 1w41A/merged-good-all-a2m # 1w41A read from 1w41A/merged-good-all-a2m # adding 1w41A to template set # found chain 1w41A in template set T0312 10 :KGFLLRLDY 1w41A 32 :AKLIIVARN T0312 19 :GKDLVRQIEEFLEEKGIHAAHI 1w41A 42 :RPDIKEDIEYYARLSGIPVYEF Number of specific fragments extracted= 2 number of extra gaps= 0 total=53 Number of alignments=13 # 1w41A read from 1w41A/merged-good-all-a2m # found chain 1w41A in template set T0312 9 :GKGFLLRLDY 1w41A 31 :GAKLIIVARN T0312 19 :GKDLVRQIEEFLEEKGIHAAHI 1w41A 42 :RPDIKEDIEYYARLSGIPVYEF Number of specific fragments extracted= 2 number of extra gaps= 0 total=55 Number of alignments=14 # 1w41A read from 1w41A/merged-good-all-a2m # found chain 1w41A in template set T0312 9 :GKGFLLRLDY 1w41A 31 :GAKLIIVARN T0312 19 :GKDLVRQIEEFLEEKGIHAAHI 1w41A 42 :RPDIKEDIEYYARLSGIPVYEF Number of specific fragments extracted= 2 number of extra gaps= 0 total=57 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c3mA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1c3mA expands to /projects/compbio/data/pdb/1c3m.pdb.gz 1c3mA:# T0312 read from 1c3mA/merged-good-all-a2m # 1c3mA read from 1c3mA/merged-good-all-a2m # adding 1c3mA to template set # found chain 1c3mA in template set T0312 6 :FEVGKGFLLRLDYG 1c3mA 15 :GNGGKRWLQTAHGG T0312 36 :HAAHISAIG 1c3mA 29 :KITSIIIKG T0312 45 :AVRSAVIGYYDQEK 1c3mA 40 :CIFSIQFVYKDKDN T0312 59 :KEYVKKELMEPLEILSLSGNVSMKDS 1c3mA 66 :DKAETITFAEDEDITAISGTFGAYYH T0312 86 :PFCHIHVLLGKDGEVYGGHL 1c3mA 92 :MTVVTSLTFQTNKKVYGPFG T0312 106 :FSAEVFACEVFVL 1c3mA 134 :SGDVLDSIGGVVV Number of specific fragments extracted= 6 number of extra gaps= 0 total=63 Number of alignments=16 # 1c3mA read from 1c3mA/merged-good-all-a2m # found chain 1c3mA in template set T0312 7 :EVGKGFLLRLDYG 1c3mA 16 :NGGKRWLQTAHGG T0312 36 :HAAHISAIG 1c3mA 29 :KITSIIIKG T0312 45 :AVRSAVIGYYDQEK 1c3mA 40 :CIFSIQFVYKDKDN T0312 59 :KEYVKKELMEPLEILSLSGNVSM 1c3mA 66 :DKAETITFAEDEDITAISGTFGA T0312 82 :KD 1c3mA 90 :YH T0312 86 :PFCHIHVLLGKDGEVYGGHL 1c3mA 92 :MTVVTSLTFQTNKKVYGPFG T0312 107 :SAEVFACEVF 1c3mA 124 :KGKFAGFFGN Number of specific fragments extracted= 7 number of extra gaps= 0 total=70 Number of alignments=17 # 1c3mA read from 1c3mA/merged-good-all-a2m # found chain 1c3mA in template set T0312 3 :VFEFEVGKGFLLRLDYGK 1c3mA 22 :LQTAHGGKITSIIIKGGT T0312 45 :AVRSAVIGYYDQEKKE 1c3mA 40 :CIFSIQFVYKDKDNIE T0312 61 :YVKKELMEPLEILSLSGNVSMKDSKPFCH 1c3mA 68 :AETITFAEDEDITAISGTFGAYYHMTVVT T0312 91 :HVLLGKDGEVYGGHLFSAEVF 1c3mA 97 :SLTFQTNKKVYGPFGTVASSS T0312 116 :FVLPLSGEAPE 1c3mA 118 :FSLPLTKGKFA Number of specific fragments extracted= 5 number of extra gaps= 0 total=75 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wrvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wrvA expands to /projects/compbio/data/pdb/1wrv.pdb.gz 1wrvA:# T0312 read from 1wrvA/merged-good-all-a2m # 1wrvA read from 1wrvA/merged-good-all-a2m # adding 1wrvA to template set # found chain 1wrvA in template set T0312 19 :GKDLVRQIEEFLEEKGIHAAHI 1wrvA 75 :PEELEEAIKEVVRRNGYRSCYI T0312 49 :AVIGYYDQEKKEYV 1wrvA 98 :PLAWMGAKALGVNP T0312 67 :MEPLEILSLS 1wrvA 114 :NNPAEVMVAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=78 Number of alignments=19 # 1wrvA read from 1wrvA/merged-good-all-a2m # found chain 1wrvA in template set T0312 20 :KDLVRQIEEFLEEKGIHAAHISAIGAV 1wrvA 76 :EELEEAIKEVVRRNGYRSCYIRPLAWM T0312 48 :SAVIGYY 1wrvA 116 :PAEVMVA T0312 76 :SGNVSMKDSKPFCH 1wrvA 181 :EALLLDEEGYVAEG T0312 90 :IHVLLGKDGEVYG 1wrvA 197 :ENLFFVRDGVIYA Number of specific fragments extracted= 4 number of extra gaps= 0 total=82 Number of alignments=20 # 1wrvA read from 1wrvA/merged-good-all-a2m # found chain 1wrvA in template set T0312 20 :KDLVRQIEEFLEEKGIHAAHIS 1wrvA 76 :EELEEAIKEVVRRNGYRSCYIR T0312 51 :IGYYDQEKKE 1wrvA 99 :LAWMGAKALG T0312 68 :EPLEILSLSGN 1wrvA 115 :NPAEVMVAAWE Number of specific fragments extracted= 3 number of extra gaps= 0 total=85 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gskA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0312 read from 1gskA/merged-good-all-a2m # 1gskA read from 1gskA/merged-good-all-a2m # found chain 1gskA in training set Warning: unaligning (T0312)G102 because of BadResidue code BAD_PEPTIDE in next template residue (1gskA)L265 Warning: unaligning (T0312)G103 because of BadResidue code BAD_PEPTIDE at template residue (1gskA)L265 T0312 11 :GFLLRLDYGK 1gskA 169 :VGAYIIHDPK T0312 33 :KGIHAAHISAIGAV 1gskA 187 :DEYDVPLLITDRTI T0312 47 :RSAVIGYYDQEKK 1gskA 204 :GSLFYPSAPENPS T0312 64 :KELMEPL 1gskA 217 :PSLPNPS T0312 71 :EILS 1gskA 232 :TILV T0312 76 :SGNVSM 1gskA 236 :NGKVWP T0312 84 :SKPFCHIHVLLGKDGEVY 1gskA 246 :EPRKYRFRVINASNTRTY T0312 104 :HL 1gskA 266 :SL T0312 106 :FS 1gskA 283 :LP T0312 108 :AEVF 1gskA 286 :SVKL T0312 112 :ACEV 1gskA 291 :SFSL T0312 116 :FVLPLSGEAPERAF 1gskA 302 :IIIDFTAYEGESII T0312 130 :DEQTGLFLW 1gskA 327 :NPETDANIM T0312 139 :LEHHHHHH 1gskA 339 :VTKPLAQK Number of specific fragments extracted= 14 number of extra gaps= 1 total=99 Number of alignments=22 # 1gskA read from 1gskA/merged-good-all-a2m # found chain 1gskA in training set Warning: unaligning (T0312)G102 because of BadResidue code BAD_PEPTIDE in next template residue (1gskA)L265 T0312 11 :GFLLRLDYGK 1gskA 169 :VGAYIIHDPK T0312 33 :KGIHAAHISAIGAV 1gskA 187 :DEYDVPLLITDRTI T0312 47 :RS 1gskA 204 :GS T0312 51 :IGYYDQEK 1gskA 206 :LFYPSAPE T0312 59 :KEYVKKELMEPL 1gskA 217 :PSLPNPSIVPAF T0312 72 :ILSLSGNVSM 1gskA 232 :TILVNGKVWP T0312 84 :SKPFCHIHVLLGKDGEVY 1gskA 246 :EPRKYRFRVINASNTRTY T0312 103 :GHLFSAEV 1gskA 280 :GGLLPRSV T0312 111 :F 1gskA 289 :L T0312 113 :CEV 1gskA 292 :FSL T0312 116 :FVLPLSGEAPERAF 1gskA 302 :IIIDFTAYEGESII T0312 130 :DEQTGLFLWL 1gskA 327 :NPETDANIMQ T0312 140 :EHH 1gskA 340 :TKP T0312 143 :HHH 1gskA 345 :QKD Number of specific fragments extracted= 14 number of extra gaps= 1 total=113 Number of alignments=23 # 1gskA read from 1gskA/merged-good-all-a2m # found chain 1gskA in training set Warning: unaligning (T0312)N78 because of BadResidue code BAD_PEPTIDE in next template residue (1gskA)L265 Warning: unaligning (T0312)V79 because of BadResidue code BAD_PEPTIDE at template residue (1gskA)L265 T0312 65 :ELMEPLEILSL 1gskA 244 :EVEPRKYRFRV T0312 76 :SG 1gskA 262 :TY T0312 80 :SMKDSKPFCHIHV 1gskA 266 :SLDNGGDFIQIGS T0312 102 :GGHLFSA 1gskA 279 :DGGLLPR T0312 109 :EVF 1gskA 287 :VKL T0312 112 :ACEVFVLPL 1gskA 298 :ERYDIIIDF T0312 121 :SGEA 1gskA 310 :EGES T0312 125 :PERAFDEQTGLFLWLE 1gskA 322 :CGGDVNPETDANIMQF Number of specific fragments extracted= 8 number of extra gaps= 1 total=121 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n6aA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0312 read from 1n6aA/merged-good-all-a2m # 1n6aA read from 1n6aA/merged-good-all-a2m # found chain 1n6aA in training set Warning: unaligning (T0312)K59 because first residue in template chain is (1n6aA)H116 T0312 60 :EYVKKELMEPLE 1n6aA 117 :GVCWIYYPDGGS T0312 75 :LSGNV 1n6aA 129 :LVGEV T0312 81 :MKDSKPFC 1n6aA 134 :NEDGEMTG T0312 89 :HIHVLLGKDGEVYGGHLFSAEVF 1n6aA 143 :KIAYVYPDERTALYGKFIDGEMI T0312 112 :ACEVFVLPLSGEAPERAFDEQTGLFLW 1n6aA 167 :GKLATLMSTEEGRPHFELMPGNSVYHF T0312 140 :EHH 1n6aA 195 :KST T0312 144 :HH 1n6aA 198 :SS Number of specific fragments extracted= 7 number of extra gaps= 0 total=128 Number of alignments=25 # 1n6aA read from 1n6aA/merged-good-all-a2m # found chain 1n6aA in training set Warning: unaligning (T0312)K59 because first residue in template chain is (1n6aA)H116 T0312 60 :EYVKKELMEPLEILS 1n6aA 117 :GVCWIYYPDGGSLVG T0312 78 :N 1n6aA 132 :E T0312 80 :SMKDSKPFC 1n6aA 133 :VNEDGEMTG T0312 89 :HI 1n6aA 143 :KI T0312 92 :VLLGK 1n6aA 145 :AYVYP T0312 97 :DGEVYGGHLFSAEVF 1n6aA 151 :ERTALYGKFIDGEMI T0312 112 :ACEVFVLPLSGEAPERAFDEQTGLFLWLEHHHHH 1n6aA 167 :GKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSC Number of specific fragments extracted= 7 number of extra gaps= 0 total=135 Number of alignments=26 # 1n6aA read from 1n6aA/merged-good-all-a2m # found chain 1n6aA in training set Warning: unaligning (T0312)K59 because first residue in template chain is (1n6aA)H116 T0312 60 :EYVKKELMEPL 1n6aA 117 :GVCWIYYPDGG T0312 74 :SLSGNVS 1n6aA 128 :SLVGEVN T0312 82 :KDSKPF 1n6aA 135 :EDGEMT T0312 88 :CHIHVLLGKDGEVYGGHLFSAEVF 1n6aA 142 :EKIAYVYPDERTALYGKFIDGEMI T0312 112 :ACEVFVLPLSGEAPERAFDEQTGLFLWLE 1n6aA 167 :GKLATLMSTEEGRPHFELMPGNSVYHFDK Number of specific fragments extracted= 5 number of extra gaps= 0 total=140 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i1kA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1i1kA expands to /projects/compbio/data/pdb/1i1k.pdb.gz 1i1kA:# T0312 read from 1i1kA/merged-good-all-a2m # 1i1kA read from 1i1kA/merged-good-all-a2m # adding 1i1kA to template set # found chain 1i1kA in template set T0312 20 :KDLVRQIEEFLEEKGIHAAHI 1i1kA 76 :DELMEACRDVIRKNNLTSAYI T0312 49 :AVIGYYDQEKKEYVKKEL 1i1kA 98 :PLIFVGDVGMGVNPPAGY T0312 69 :PLEILSLS 1i1kA 116 :STDVIIAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=143 Number of alignments=28 # 1i1kA read from 1i1kA/merged-good-all-a2m # found chain 1i1kA in template set T0312 20 :KDLVRQIEEFLEEKGIHAAHI 1i1kA 76 :DELMEACRDVIRKNNLTSAYI T0312 49 :AVIGYYDQEKKEYVKKELM 1i1kA 98 :PLIFVGDVGMGVNPPAGYS T0312 70 :LEILSLS 1i1kA 117 :TDVIIAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=146 Number of alignments=29 # 1i1kA read from 1i1kA/merged-good-all-a2m # found chain 1i1kA in template set T0312 20 :KDLVRQIEEFLEEKGIHAAHIS 1i1kA 76 :DELMEACRDVIRKNNLTSAYIR T0312 49 :AVIGYYDQEKKE 1i1kA 98 :PLIFVGDVGMGV T0312 63 :KKELMEPLEILSLSG 1i1kA 110 :NPPAGYSTDVIIAAF Number of specific fragments extracted= 3 number of extra gaps= 0 total=149 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fukA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1fukA expands to /projects/compbio/data/pdb/1fuk.pdb.gz 1fukA:# T0312 read from 1fukA/merged-good-all-a2m # 1fukA read from 1fukA/merged-good-all-a2m # adding 1fukA to template set # found chain 1fukA in template set Warning: unaligning (T0312)G9 because first residue in template chain is (1fukA)I233 T0312 10 :KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAI 1fukA 234 :KQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=150 Number of alignments=31 # 1fukA read from 1fukA/merged-good-all-a2m # found chain 1fukA in template set Warning: unaligning (T0312)G9 because first residue in template chain is (1fukA)I233 T0312 10 :KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAI 1fukA 234 :KQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=151 Number of alignments=32 # 1fukA read from 1fukA/merged-good-all-a2m # found chain 1fukA in template set T0312 10 :KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISA 1fukA 234 :KQFYVNVEEEEYKYECLTDLYDSISVTQAVIFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=152 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xv2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xv2A expands to /projects/compbio/data/pdb/1xv2.pdb.gz 1xv2A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0312 read from 1xv2A/merged-good-all-a2m # 1xv2A read from 1xv2A/merged-good-all-a2m # adding 1xv2A to template set # found chain 1xv2A in template set T0312 9 :GKGFLLRLDYGKDLVRQIEEFLEEKG 1xv2A 82 :SKTFPLQQLSQDDVFAQIKNEMLSEN T0312 36 :HAAHISAIGAVRSAVIGYYDQEKKEY 1xv2A 108 :LFSAVKIYGTFKHMHVRMMPAQQPPY T0312 67 :MEPLE 1xv2A 142 :RQPEE T0312 72 :ILSLSGNVSMKD 1xv2A 152 :RGAIVGFFTPEL T0312 84 :SKPFCHIHVLLGKDGEVYGGHLFSAEVFACEVFVLPLS 1xv2A 166 :GVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQNFE T0312 124 :APERAFDEQ 1xv2A 204 :TFQQHFPVN Number of specific fragments extracted= 6 number of extra gaps= 0 total=158 Number of alignments=34 # 1xv2A read from 1xv2A/merged-good-all-a2m # found chain 1xv2A in template set T0312 20 :KDLVRQIEEFLEEKGI 1xv2A 93 :DDVFAQIKNEMLSENL T0312 37 :AAHISAIGAVRSAVIGYYDQEKKEY 1xv2A 109 :FSAVKIYGTFKHMHVRMMPAQQPPY T0312 62 :VKKELME 1xv2A 144 :PEEKRQD T0312 70 :LE 1xv2A 151 :IR T0312 73 :LSLSGNVSMKD 1xv2A 153 :GAIVGFFTPEL T0312 84 :SKPFCHIHVLLGKDGEVYGGHLFSAEVFACEVFVLPLS 1xv2A 166 :GVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQNFE Number of specific fragments extracted= 6 number of extra gaps= 0 total=164 Number of alignments=35 # 1xv2A read from 1xv2A/merged-good-all-a2m # found chain 1xv2A in template set T0312 19 :GKDLVRQIEEF 1xv2A 92 :QDDVFAQIKNE T0312 36 :HAAHISAIGAVRSAVIGYYDQEKKE 1xv2A 108 :LFSAVKIYGTFKHMHVRMMPAQQPP T0312 61 :YVKKELME 1xv2A 143 :QPEEKRQD T0312 71 :EILSLSGNVSMKD 1xv2A 151 :IRGAIVGFFTPEL T0312 84 :SKPFCHIHVLLGKDG 1xv2A 168 :GSAGFHIHFADDERA T0312 101 :YGGHLFSAEVFACEVFVLPLS 1xv2A 183 :YGGHVLDFEVDDVVVEIQNFE Number of specific fragments extracted= 6 number of extra gaps= 0 total=170 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1t0bA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0312 read from 1t0bA/merged-good-all-a2m # 1t0bA read from 1t0bA/merged-good-all-a2m # found chain 1t0bA in training set Warning: unaligning (T0312)P69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t0bA)Y155 Warning: unaligning (T0312)L70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t0bA)Y155 T0312 20 :KDLVRQIEEFLEEK 1t0bA 81 :DEVVERVHRRVLEG T0312 37 :AAHISAIGAV 1t0bA 95 :MGLIVLHSGH T0312 47 :RSAVIGYYDQEKK 1t0bA 126 :EKERLWVVAPGHP T0312 60 :EYVKKELME 1t0bA 145 :PYIELEQEE T0312 71 :EILSL 1t0bA 166 :ETIFI T0312 79 :VSMKDSKPFCHIHVLLGKDGEVYG 1t0bA 171 :SWFEGGEVFRSGCTFTRGKGKIFY Number of specific fragments extracted= 6 number of extra gaps= 1 total=176 Number of alignments=37 # 1t0bA read from 1t0bA/merged-good-all-a2m # found chain 1t0bA in training set Warning: unaligning (T0312)P69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t0bA)Y155 Warning: unaligning (T0312)L70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t0bA)Y155 T0312 19 :GKDLVRQIEEFLEEK 1t0bA 80 :KDEVVERVHRRVLEG T0312 37 :AAHISAI 1t0bA 95 :MGLIVLH T0312 44 :GAV 1t0bA 103 :GHF T0312 48 :SAVIGYYDQEK 1t0bA 127 :KERLWVVAPGH T0312 59 :KEYVKKELME 1t0bA 144 :GPYIELEQEE T0312 71 :EILS 1t0bA 166 :ETIF T0312 78 :NVSMKDSKPFCHIHVLLGKDGEVYG 1t0bA 170 :ISWFEGGEVFRSGCTFTRGKGKIFY Number of specific fragments extracted= 7 number of extra gaps= 1 total=183 Number of alignments=38 # 1t0bA read from 1t0bA/merged-good-all-a2m # found chain 1t0bA in training set Warning: unaligning (T0312)V62 because of BadResidue code BAD_PEPTIDE in next template residue (1t0bA)F158 Warning: unaligning (T0312)K63 because of BadResidue code BAD_PEPTIDE at template residue (1t0bA)F158 T0312 20 :KDLVRQIEEFLEE 1t0bA 81 :DEVVERVHRRVLE T0312 36 :HAAHISAIGAVR 1t0bA 94 :GMGLIVLHSGHF T0312 48 :SAVIGYYDQEKKE 1t0bA 127 :KERLWVVAPGHPI T0312 61 :Y 1t0bA 156 :G T0312 64 :KELMEP 1t0bA 159 :FDIPEP T0312 74 :SLSGNVSMKDSKPFCHIHVLLGKDGEVYG 1t0bA 166 :ETIFISWFEGGEVFRSGCTFTRGKGKIFY Number of specific fragments extracted= 6 number of extra gaps= 1 total=189 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1m1hA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1m1hA expands to /projects/compbio/data/pdb/1m1h.pdb.gz 1m1hA:# T0312 read from 1m1hA/merged-good-all-a2m # 1m1hA read from 1m1hA/merged-good-all-a2m # adding 1m1hA to template set # found chain 1m1hA in template set Warning: unaligning (T0312)K2 because first residue in template chain is (1m1hA)Q5 T0312 3 :VFEFE 1m1hA 6 :VQELE T0312 9 :GKGFLLRLDYGK 1m1hA 11 :KKWYALQVEPGK T0312 21 :DLVRQIEEFLEEKGIH 1m1hA 25 :EAKENLLKVLELEGLK T0312 47 :RSAVIGY 1m1hA 52 :EKVVIRA T0312 57 :EKKEYVKKELMEPLEILSLSG 1m1hA 59 :QGKEKYRLSLKGNARDISVLG T0312 84 :SKPFCHIHV 1m1hA 80 :KKGVTTFRI T0312 96 :KDGE 1m1hA 89 :ENGE T0312 115 :VFVLPLSG 1m1hA 93 :VKVVESVE T0312 123 :EAP 1m1hA 108 :PPI T0312 126 :ERAFDEQTGLFLW 1m1hA 115 :QKITCKENKTEAK Number of specific fragments extracted= 10 number of extra gaps= 0 total=199 Number of alignments=40 # 1m1hA read from 1m1hA/merged-good-all-a2m # found chain 1m1hA in template set T0312 3 :VFEFE 1m1hA 6 :VQELE T0312 9 :GKGFLLRLDYGK 1m1hA 11 :KKWYALQVEPGK T0312 21 :DLVRQIEEFLEEKGIH 1m1hA 25 :EAKENLLKVLELEGLK T0312 43 :IGAVRSAVIGY 1m1hA 48 :VPAEEKVVIRA T0312 57 :EKKEYVKKELMEPLEILSLSG 1m1hA 59 :QGKEKYRLSLKGNARDISVLG T0312 84 :SKPFCHIHV 1m1hA 80 :KKGVTTFRI T0312 96 :KDGEVYG 1m1hA 89 :ENGEVKV T0312 107 :SAEVF 1m1hA 113 :PGQKI T0312 112 :A 1m1hA 119 :C T0312 113 :CEVFVLP 1m1hA 124 :TEAKIVL Number of specific fragments extracted= 10 number of extra gaps= 0 total=209 Number of alignments=41 # 1m1hA read from 1m1hA/merged-good-all-a2m # found chain 1m1hA in template set T0312 7 :EVGKGFLLRLDYGK 1m1hA 9 :LEKKWYALQVEPGK T0312 21 :DLVRQIEEFLEEKGIH 1m1hA 25 :EAKENLLKVLELEGLK T0312 46 :VRSAVIGYYD 1m1hA 49 :PAEEKVVIRA T0312 57 :EKKEYVKKELMEPLEILSL 1m1hA 59 :QGKEKYRLSLKGNARDISV T0312 76 :SGNVSMKDSKPFCH 1m1hA 83 :VTTFRIENGEVKVV T0312 94 :LGKDG 1m1hA 110 :ISKPG T0312 109 :EVF 1m1hA 115 :QKI T0312 112 :ACEVFVLPLSG 1m1hA 123 :KTEAKIVLDNK Number of specific fragments extracted= 8 number of extra gaps= 0 total=217 Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1iyeA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1iyeA expands to /projects/compbio/data/pdb/1iye.pdb.gz 1iyeA:# T0312 read from 1iyeA/merged-good-all-a2m # 1iyeA read from 1iyeA/merged-good-all-a2m # adding 1iyeA to template set # found chain 1iyeA in template set T0312 20 :KDLVRQIEEFLEEKGIHAAHI 1iyeA 76 :DELMEACRDVIRKNNLTSAYI T0312 49 :AVIGYYDQEKKEYVKK 1iyeA 98 :PLIFVGDVGMGVNPPA T0312 67 :MEPLEILSLS 1iyeA 114 :GYSTDVIIAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=220 Number of alignments=43 # 1iyeA read from 1iyeA/merged-good-all-a2m # found chain 1iyeA in template set T0312 20 :KDLVRQIEEFLEEKGIHAAHI 1iyeA 76 :DELMEACRDVIRKNNLTSAYI T0312 49 :AVIGYYDQEKKEYVKKEL 1iyeA 98 :PLIFVGDVGMGVNPPAGY T0312 69 :PLEILSLS 1iyeA 116 :STDVIIAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=223 Number of alignments=44 # 1iyeA read from 1iyeA/merged-good-all-a2m # found chain 1iyeA in template set T0312 20 :KDLVRQIEEFLEEKGIHAAHIS 1iyeA 76 :DELMEACRDVIRKNNLTSAYIR T0312 49 :AVIGYYDQEKK 1iyeA 98 :PLIFVGDVGMG T0312 62 :VKKELMEPLEILSLS 1iyeA 109 :VNPPAGYSTDVIIAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=226 Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cr1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1cr1A expands to /projects/compbio/data/pdb/1cr1.pdb.gz 1cr1A:# T0312 read from 1cr1A/merged-good-all-a2m # 1cr1A read from 1cr1A/merged-good-all-a2m # adding 1cr1A to template set # found chain 1cr1A in template set Warning: unaligning (T0312)R47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cr1A)T484 Warning: unaligning (T0312)K64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cr1A)T484 Warning: unaligning (T0312)M81 because of BadResidue code BAD_PEPTIDE in next template residue (1cr1A)N505 Warning: unaligning (T0312)K82 because of BadResidue code BAD_PEPTIDE at template residue (1cr1A)N505 Warning: unaligning (T0312)D83 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cr1A)L513 Warning: unaligning (T0312)F87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cr1A)L513 Warning: unaligning (T0312)H141 because last residue in template chain is (1cr1A)Y547 T0312 20 :KDLVRQIEEFLEEKGI 1cr1A 443 :DNLMTKLKGFAKSTGV T0312 39 :HISAIGAV 1cr1A 459 :VLVVICHL T0312 65 :ELMEP 1cr1A 485 :DLRGS T0312 70 :LEILS 1cr1A 496 :SDTII T0312 78 :NVS 1cr1A 501 :ALE T0312 88 :CHIHVLLGK 1cr1A 514 :VLVRILKCR T0312 97 :DGE 1cr1A 524 :TGD T0312 108 :AEVF 1cr1A 527 :TGIA T0312 112 :AC 1cr1A 532 :YM T0312 128 :AFDEQTGLFLWLE 1cr1A 534 :EYNKETGWLEPSS Number of specific fragments extracted= 10 number of extra gaps= 1 total=236 Number of alignments=46 # 1cr1A read from 1cr1A/merged-good-all-a2m # found chain 1cr1A in template set Warning: unaligning (T0312)R47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cr1A)T484 Warning: unaligning (T0312)K64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cr1A)T484 Warning: unaligning (T0312)M81 because of BadResidue code BAD_PEPTIDE in next template residue (1cr1A)N505 Warning: unaligning (T0312)K82 because of BadResidue code BAD_PEPTIDE at template residue (1cr1A)N505 Warning: unaligning (T0312)D83 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cr1A)L513 Warning: unaligning (T0312)F87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cr1A)L513 Warning: unaligning (T0312)H141 because last residue in template chain is (1cr1A)Y547 T0312 20 :KDLVRQIEEFLEEKGI 1cr1A 443 :DNLMTKLKGFAKSTGV T0312 39 :HISAIGAV 1cr1A 459 :VLVVICHL T0312 65 :ELMEP 1cr1A 485 :DLRGS T0312 70 :LEILS 1cr1A 496 :SDTII T0312 78 :NVS 1cr1A 501 :ALE T0312 88 :CHIHVLLGK 1cr1A 514 :VLVRILKCR T0312 97 :DGE 1cr1A 524 :TGD T0312 108 :AEVF 1cr1A 527 :TGIA T0312 112 :AC 1cr1A 532 :YM T0312 128 :AFDEQTGLFLWLE 1cr1A 534 :EYNKETGWLEPSS Number of specific fragments extracted= 10 number of extra gaps= 1 total=246 Number of alignments=47 # 1cr1A read from 1cr1A/merged-good-all-a2m # found chain 1cr1A in template set Warning: unaligning (T0312)R47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cr1A)T484 Warning: unaligning (T0312)K64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cr1A)T484 Warning: unaligning (T0312)L94 because of BadResidue code BAD_PEPTIDE in next template residue (1cr1A)N505 Warning: unaligning (T0312)G95 because of BadResidue code BAD_PEPTIDE at template residue (1cr1A)N505 Warning: unaligning (T0312)K96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cr1A)L513 Warning: unaligning (T0312)V110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cr1A)L513 T0312 20 :KDLVRQIEEFLEEKGI 1cr1A 443 :DNLMTKLKGFAKSTGV T0312 39 :HISAIGAV 1cr1A 459 :VLVVICHL T0312 65 :ELMEP 1cr1A 485 :DLRGS T0312 86 :PFCHIHVL 1cr1A 496 :SDTIIALE T0312 111 :FACEVFVLPLSGEA 1cr1A 514 :VLVRILKCRFTGDT T0312 125 :PERAFDEQTGLF 1cr1A 531 :GYMEYNKETGWL Number of specific fragments extracted= 6 number of extra gaps= 1 total=252 Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f69A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2f69A expands to /projects/compbio/data/pdb/2f69.pdb.gz 2f69A:Skipped atom 16, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 18, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 25, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 476, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 478, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 480, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 482, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 484, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 494, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 496, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 498, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 500, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 502, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 504, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 506, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 661, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 861, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 915, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1125, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1127, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1129, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1198, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1276, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1278, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1280, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1713, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1715, because occupancy 0.500 <= existing 0.500 in 2f69A # T0312 read from 2f69A/merged-good-all-a2m # 2f69A read from 2f69A/merged-good-all-a2m # adding 2f69A to template set # found chain 2f69A in template set Warning: unaligning (T0312)K59 because first residue in template chain is (2f69A)H116 T0312 60 :EYVKKELMEPLEILS 2f69A 117 :GVCWIYYPDGGSLVG T0312 78 :NV 2f69A 132 :EV T0312 81 :MKDSKPFC 2f69A 134 :NEDGEMTG T0312 89 :HIHVLLGKDGEVYGGHLFSAEVF 2f69A 143 :KIAYVYPDERTALYGKFIDGEMI T0312 112 :ACEVFVLPLSGEAPERAFDEQTGLFLW 2f69A 167 :GKLATLMSTEEGRPHFELMPGNSVYHF T0312 142 :HHHH 2f69A 196 :STSS Number of specific fragments extracted= 6 number of extra gaps= 0 total=258 Number of alignments=49 # 2f69A read from 2f69A/merged-good-all-a2m # found chain 2f69A in template set Warning: unaligning (T0312)K59 because first residue in template chain is (2f69A)H116 T0312 60 :EYVKKELMEPLEILS 2f69A 117 :GVCWIYYPDGGSLVG T0312 78 :N 2f69A 132 :E T0312 80 :SMKDSKPFCHIHVLLGK 2f69A 133 :VNEDGEMTGEKIAYVYP T0312 97 :DGEVYGGHLFSAEVF 2f69A 151 :ERTALYGKFIDGEMI T0312 112 :ACEVFVLPLSGEAPERAFDEQTGLFLWLEHHHH 2f69A 167 :GKLATLMSTEEGRPHFELMPGNSVYHFDKSTSS Number of specific fragments extracted= 5 number of extra gaps= 0 total=263 Number of alignments=50 # 2f69A read from 2f69A/merged-good-all-a2m # found chain 2f69A in template set Warning: unaligning (T0312)K59 because first residue in template chain is (2f69A)H116 T0312 60 :EYVKKELMEPL 2f69A 117 :GVCWIYYPDGG T0312 74 :SLSGNVS 2f69A 128 :SLVGEVN T0312 82 :KDSKPF 2f69A 135 :EDGEMT T0312 88 :CHIHVLLGKDGEVYGGHLFSAEVF 2f69A 142 :EKIAYVYPDERTALYGKFIDGEMI T0312 112 :ACEVFVLPLSGEAPERAFDEQTGLFLWLE 2f69A 167 :GKLATLMSTEEGRPHFELMPGNSVYHFDK Number of specific fragments extracted= 5 number of extra gaps= 0 total=268 Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vcoA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vcoA expands to /projects/compbio/data/pdb/1vco.pdb.gz 1vcoA:# T0312 read from 1vcoA/merged-good-all-a2m # 1vcoA read from 1vcoA/merged-good-all-a2m # adding 1vcoA to template set # found chain 1vcoA in template set T0312 20 :KDLVRQIEEFLEEKGIHAAHISAIGAVRS 1vcoA 130 :DEIKERIRKVAEEQKAEIVVVEVGGTVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=269 Number of alignments=52 # 1vcoA read from 1vcoA/merged-good-all-a2m # found chain 1vcoA in template set T0312 20 :KDLVRQIEEFLEEKGIHAAHISAIGAVRS 1vcoA 130 :DEIKERIRKVAEEQKAEIVVVEVGGTVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=270 Number of alignments=53 # 1vcoA read from 1vcoA/merged-good-all-a2m # found chain 1vcoA in template set T0312 20 :KDLVRQIEEFLEEKGIHAAHISAIGAVRS 1vcoA 130 :DEIKERIRKVAEEQKAEIVVVEVGGTVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=271 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ys7A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ys7A expands to /projects/compbio/data/pdb/1ys7.pdb.gz 1ys7A:# T0312 read from 1ys7A/merged-good-all-a2m # 1ys7A read from 1ys7A/merged-good-all-a2m # adding 1ys7A to template set # found chain 1ys7A in template set Warning: unaligning (T0312)K10 because first residue in template chain is (1ys7A)S7 T0312 11 :GFLLRLDYGKDLVRQIEEFLEEKGIHAAHI 1ys7A 8 :PRVLVVDDDSDVLASLERGLRLSGFEVATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=272 Number of alignments=55 # 1ys7A read from 1ys7A/merged-good-all-a2m # found chain 1ys7A in template set Warning: unaligning (T0312)K10 because first residue in template chain is (1ys7A)S7 T0312 11 :GFLLRLDYGKDLVRQIEEFLEEKGIHAAH 1ys7A 8 :PRVLVVDDDSDVLASLERGLRLSGFEVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=273 Number of alignments=56 # 1ys7A read from 1ys7A/merged-good-all-a2m # found chain 1ys7A in template set Warning: unaligning (T0312)K10 because first residue in template chain is (1ys7A)S7 T0312 11 :GFLLRLDYGKDLVRQIEEFLEEKGIHAAH 1ys7A 8 :PRVLVVDDDSDVLASLERGLRLSGFEVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=274 Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gnxA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2gnxA expands to /projects/compbio/data/pdb/2gnx.pdb.gz 2gnxA:Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0312 read from 2gnxA/merged-good-all-a2m # 2gnxA read from 2gnxA/merged-good-all-a2m # adding 2gnxA to template set # found chain 2gnxA in template set Warning: unaligning (T0312)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gnxA)Q345 T0312 19 :GKDLVRQIEEFLEEKGIHAAHI 2gnxA 294 :NPDLFGKISSFIRKYDAANVSL T0312 59 :KEYVKKELMEPL 2gnxA 346 :YPAVVSLPSDRP T0312 72 :ILSLSG 2gnxA 381 :VVHFYD T0312 82 :KD 2gnxA 387 :DK T0312 84 :S 2gnxA 390 :Q T0312 88 :CHIHVLLGKDG 2gnxA 391 :STYFLTRPEPH T0312 112 :ACEVFVLP 2gnxA 402 :FTIVVIFE Number of specific fragments extracted= 7 number of extra gaps= 0 total=281 Number of alignments=58 # 2gnxA read from 2gnxA/merged-good-all-a2m # found chain 2gnxA in template set Warning: unaligning (T0312)Y54 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gnxA)Q345 T0312 19 :GKDLVRQIEEFLEEKGI 2gnxA 294 :NPDLFGKISSFIRKYDA T0312 47 :RSAVIGY 2gnxA 311 :ANVSLIF T0312 77 :GNVSMKDS 2gnxA 348 :AVVSLPSD T0312 85 :KPFCH 2gnxA 379 :EKVVH T0312 90 :IHVLLGK 2gnxA 391 :STYFLTR T0312 112 :ACEVFVLP 2gnxA 402 :FTIVVIFE T0312 127 :RAFDEQ 2gnxA 410 :SKKSER Number of specific fragments extracted= 7 number of extra gaps= 0 total=288 Number of alignments=59 # 2gnxA read from 2gnxA/merged-good-all-a2m # found chain 2gnxA in template set T0312 19 :GKDLVRQIEEFLEEKGIHAAHIS 2gnxA 294 :NPDLFGKISSFIRKYDAANVSLI T0312 61 :YVKKELM 2gnxA 381 :VVHFYDD T0312 73 :LSLSGNVSMKD 2gnxA 391 :STYFLTRPEPH T0312 88 :CHIHVLLGK 2gnxA 402 :FTIVVIFES Number of specific fragments extracted= 4 number of extra gaps= 0 total=292 Number of alignments=60 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wn2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wn2A expands to /projects/compbio/data/pdb/1wn2.pdb.gz 1wn2A:Skipped atom 169, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 171, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 173, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 505, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 507, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 509, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 511, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 527, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 529, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 531, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 533, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 590, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 592, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 594, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 596, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 833, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 835, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 837, because occupancy 0.500 <= existing 0.500 in 1wn2A Skipped atom 839, because occupancy 0.500 <= existing 0.500 in 1wn2A # T0312 read from 1wn2A/merged-good-all-a2m # 1wn2A read from 1wn2A/merged-good-all-a2m # adding 1wn2A to template set # found chain 1wn2A in template set T0312 8 :VGKGFLLRLDYGKDLVR 1wn2A 54 :GQKKVVVKVESEEELFK T0312 26 :IEEFLEEKGIHAAHI 1wn2A 71 :LKAEAEKLGLPNALI T0312 53 :YYDQEKK 1wn2A 90 :LTEIPPG T0312 69 :PLEILS 1wn2A 97 :TVTVLA T0312 76 :SGN 1wn2A 103 :VGP Number of specific fragments extracted= 5 number of extra gaps= 0 total=297 Number of alignments=61 # 1wn2A read from 1wn2A/merged-good-all-a2m # found chain 1wn2A in template set T0312 8 :VGKGFLLRLDYGKDLVR 1wn2A 54 :GQKKVVVKVESEEELFK T0312 26 :IEEFLEEKGIHAAHI 1wn2A 71 :LKAEAEKLGLPNALI T0312 52 :GYYDQEK 1wn2A 86 :RDAGLTE T0312 61 :YV 1wn2A 93 :IP T0312 67 :MEPLEILSL 1wn2A 95 :PGTVTVLAV T0312 77 :G 1wn2A 104 :G Number of specific fragments extracted= 6 number of extra gaps= 0 total=303 Number of alignments=62 # 1wn2A read from 1wn2A/merged-good-all-a2m # found chain 1wn2A in template set T0312 8 :VGKGFLLRLDYGKDLVR 1wn2A 54 :GQKKVVVKVESEEELFK T0312 26 :IEEFLEEKGIHAAHIS 1wn2A 71 :LKAEAEKLGLPNALIR T0312 54 :YDQEK 1wn2A 88 :AGLTE T0312 81 :MKDSKPFCHIHV 1wn2A 93 :IPPGTVTVLAVG Number of specific fragments extracted= 4 number of extra gaps= 0 total=307 Number of alignments=63 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0312//projects/compbio/experiments/protein-predict/casp7/T0312/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0312//projects/compbio/experiments/protein-predict/casp7/T0312/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0312/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0312/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)I40.CB) [> 3.6929 = 6.1548 < 8.0013] w=1.0000 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)S76.CB) [> 3.4573 = 5.7621 < 7.4908] w=0.7386 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)S76.CB) [> 4.3100 = 7.1833 < 9.3383] w=0.7386 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)L75.CB) [> 4.3320 = 7.2200 < 9.3860] w=0.7192 to align # Constraint # added constraint: constraint((T0312)L14.CB, (T0312)Q25.CB) [> 3.3847 = 5.6412 < 7.3336] w=0.6684 to align # Constraint # added constraint: constraint((T0312)V79.CB, (T0312)H89.CB) [> 3.9910 = 6.6517 < 8.6472] w=0.6556 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)S74.CB) [> 3.9877 = 6.6462 < 8.6401] w=0.6249 to align # Constraint # added constraint: constraint((T0312)L93.CB, (T0312)G102.CA) [> 3.6476 = 6.0793 < 7.9031] w=0.5761 to align # Constraint # added constraint: constraint((T0312)L16.CB, (T0312)Q25.CB) [> 2.9906 = 4.9844 < 6.4798] w=0.5727 to align # Constraint # added constraint: constraint((T0312)L14.CB, (T0312)F29.CB) [> 3.6660 = 6.1100 < 7.9429] w=0.5727 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)L75.CB) [> 3.7293 = 6.2155 < 8.0801] w=0.5536 to align # Constraint # added constraint: constraint((T0312)Y53.CB, (T0312)L70.CB) [> 3.9773 = 6.6289 < 8.6175] w=0.5471 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)S74.CB) [> 4.0182 = 6.6970 < 8.7061] w=0.5437 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)L73.CB) [> 4.2820 = 7.1366 < 9.2776] w=0.5361 to align # Constraint # added constraint: constraint((T0312)L30.CB, (T0312)I40.CB) [> 3.9797 = 6.6328 < 8.6227] w=0.5218 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)S74.CB) [> 3.8604 = 6.4339 < 8.3641] w=0.5190 to align # Constraint # added constraint: constraint((T0312)S76.CB, (T0312)V92.CB) [> 4.0491 = 6.7485 < 8.7731] w=0.5078 to align # Constraint # added constraint: constraint((T0312)V92.CB, (T0312)G102.CA) [> 3.7226 = 6.2043 < 8.0657] w=0.5063 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)V92.CB) [> 3.5673 = 5.9455 < 7.7291] w=0.5042 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)G77.CA) [> 3.7941 = 6.3234 < 8.2205] w=0.5021 to align # Constraint # added constraint: constraint((T0312)N78.CB, (T0312)I90.CB) [> 4.3482 = 7.2470 < 9.4211] w=0.5021 to align # Constraint # added constraint: constraint((T0312)G77.CA, (T0312)H91.CB) [> 3.4518 = 5.7530 < 7.4789] w=0.4982 to align # Constraint # added constraint: constraint((T0312)Y53.CB, (T0312)E71.CB) [> 4.2237 = 7.0395 < 9.1514] w=0.4976 to align # Constraint # added constraint: constraint((T0312)L13.CB, (T0312)A38.CB) [> 3.8401 = 6.4001 < 8.3202] w=0.4921 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)A38.CB) [> 4.5318 = 7.5530 < 9.8189] w=0.4906 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)V62.CB) [> 3.7248 = 6.2080 < 8.0704] w=0.4901 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)K63.CB) [> 4.1538 = 6.9229 < 8.9998] w=0.4901 to align # Constraint # added constraint: constraint((T0312)N78.CB, (T0312)H89.CB) [> 3.6601 = 6.1002 < 7.9302] w=0.4821 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)G102.CA) [> 4.0423 = 6.7371 < 8.7583] w=0.4802 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)K63.CB) [> 3.7248 = 6.2081 < 8.0705] w=0.4760 to align # Constraint # added constraint: constraint((T0312)L73.CB, (T0312)G95.CA) [> 3.1163 = 5.1938 < 6.7520] w=0.4747 to align # Constraint # added constraint: constraint((T0312)Y53.CB, (T0312)K64.CB) [> 3.7553 = 6.2588 < 8.1364] w=0.4686 to align # Constraint # added constraint: constraint((T0312)Y53.CB, (T0312)V62.CB) [> 3.0939 = 5.1565 < 6.7034] w=0.4680 to align # Constraint # added constraint: constraint((T0312)S80.CB, (T0312)H89.CB) [> 3.7262 = 6.2103 < 8.0734] w=0.4617 to align # Constraint # added constraint: constraint((T0312)S74.CB, (T0312)G95.CA) [> 3.8732 = 6.4553 < 8.3919] w=0.4601 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)E71.CB) [> 3.4196 = 5.6993 < 7.4091] w=0.4559 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)L70.CB) [> 2.9883 = 4.9806 < 6.4747] w=0.4559 to align # Constraint # added constraint: constraint((T0312)S76.CB, (T0312)L93.CB) [> 3.5635 = 5.9391 < 7.7208] w=0.4548 to align # Constraint # added constraint: constraint((T0312)G77.CA, (T0312)I90.CB) [> 3.8128 = 6.3546 < 8.2610] w=0.4546 to align # Constraint # added constraint: constraint((T0312)Y54.CB, (T0312)L70.CB) [> 3.9062 = 6.5104 < 8.4635] w=0.4514 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)S76.CB) [> 3.3024 = 5.5041 < 7.1553] w=0.4514 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)L73.CB) [> 4.2111 = 7.0185 < 9.1241] w=0.4485 to align # Constraint # added constraint: constraint((T0312)L73.CB, (T0312)L94.CB) [> 3.2758 = 5.4596 < 7.0975] w=0.4475 to align # Constraint # added constraint: constraint((T0312)R15.CB, (T0312)A38.CB) [> 4.4187 = 7.3645 < 9.5739] w=0.4451 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)L75.CB) [> 2.9730 = 4.9549 < 6.4414] w=0.4384 to align # Constraint # added constraint: constraint((T0312)E27.CB, (T0312)A37.CB) [> 3.2246 = 5.3743 < 6.9866] w=0.4373 to align # Constraint # added constraint: constraint((T0312)V23.CB, (T0312)H39.CB) [> 3.9567 = 6.5945 < 8.5729] w=0.4373 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)L66.CB) [> 4.2762 = 7.1269 < 9.2650] w=0.4371 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)E65.CB) [> 3.4110 = 5.6850 < 7.3905] w=0.4371 to align # Constraint # added constraint: constraint((T0312)L93.CB, (T0312)G103.CA) [> 3.4666 = 5.7777 < 7.5110] w=0.4361 to align # Constraint # added constraint: constraint((T0312)V92.CB, (T0312)H104.CB) [> 4.2180 = 7.0299 < 9.1389] w=0.4320 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)L70.CB) [> 3.5282 = 5.8803 < 7.6444] w=0.4290 to align # Constraint # added constraint: constraint((T0312)I35.CB, (T0312)S48.CB) [> 4.4069 = 7.3449 < 9.5484] w=0.4208 to align # Constraint # added constraint: constraint((T0312)L30.CB, (T0312)A49.CB) [> 4.5178 = 7.5297 < 9.7887] w=0.4208 to align # Constraint # added constraint: constraint((T0312)V92.CB, (T0312)L105.CB) [> 3.4242 = 5.7069 < 7.4190] w=0.4207 to align # Constraint # added constraint: constraint((T0312)G44.CA, (T0312)L73.CB) [> 4.1580 = 6.9300 < 9.0090] w=0.4202 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)V115.CB) [> 4.4960 = 7.4933 < 9.7412] w=0.4202 to align # Constraint # added constraint: constraint((T0312)G77.CA, (T0312)H89.CB) [> 3.9879 = 6.6465 < 8.6405] w=0.4179 to align # Constraint # added constraint: constraint((T0312)V79.CB, (T0312)C88.CB) [> 3.5084 = 5.8473 < 7.6015] w=0.4171 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)S76.CB) [> 3.6638 = 6.1063 < 7.9382] w=0.4166 to align # Constraint # added constraint: constraint((T0312)S48.CB, (T0312)L66.CB) [> 4.1668 = 6.9447 < 9.0281] w=0.4021 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)I72.CB) [> 4.5331 = 7.5552 < 9.8218] w=0.4019 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)A49.CB) [> 3.8093 = 6.3488 < 8.2534] w=0.4009 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)S48.CB) [> 2.4579 = 4.0965 < 5.3255] w=0.4009 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)L73.CB) [> 4.1149 = 6.8582 < 8.9156] w=0.3997 to align # Constraint # added constraint: constraint((T0312)L14.CB, (T0312)I26.CB) [> 4.1961 = 6.9935 < 9.0916] w=0.3989 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)L66.CB) [> 2.8142 = 4.6904 < 6.0975] w=0.3971 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)E65.CB) [> 4.2661 = 7.1102 < 9.2432] w=0.3971 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)I51.CB) [> 4.3156 = 7.1926 < 9.3504] w=0.3966 to align # Constraint # added constraint: constraint((T0312)F12.CB, (T0312)A38.CB) [> 3.7351 = 6.2251 < 8.0927] w=0.3827 to align # Constraint # added constraint: constraint((T0312)L13.CB, (T0312)A37.CB) [> 3.2168 = 5.3614 < 6.9698] w=0.3827 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)S74.CB) [> 2.8818 = 4.8029 < 6.2438] w=0.3820 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)G103.CA) [> 3.6386 = 6.0642 < 7.8835] w=0.3792 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)L93.CB) [> 4.0653 = 6.7755 < 8.8082] w=0.3789 to align # Constraint # added constraint: constraint((T0312)V79.CB, (T0312)I90.CB) [> 3.5527 = 5.9212 < 7.6976] w=0.3763 to align # Constraint # added constraint: constraint((T0312)N78.CB, (T0312)H91.CB) [> 3.0988 = 5.1646 < 6.7140] w=0.3720 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)G77.CA) [> 3.7581 = 6.2635 < 8.1426] w=0.3692 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)I90.CB) [> 4.2610 = 7.1017 < 9.2323] w=0.3631 to align # Constraint # added constraint: constraint((T0312)N78.CB, (T0312)C88.CB) [> 4.3368 = 7.2280 < 9.3964] w=0.3625 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)V115.CB) [> 4.0005 = 6.6675 < 8.6677] w=0.3611 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)V115.CB) [> 4.4823 = 7.4705 < 9.7117] w=0.3611 to align # Constraint # added constraint: constraint((T0312)G77.CA, (T0312)V92.CB) [> 3.1143 = 5.1904 < 6.7476] w=0.3602 to align # Constraint # added constraint: constraint((T0312)S74.CB, (T0312)L94.CB) [> 4.0770 = 6.7949 < 8.8334] w=0.3602 to align # Constraint # added constraint: constraint((T0312)L30.CB, (T0312)S76.CB) [> 3.3015 = 5.5026 < 7.1534] w=0.3602 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)I72.CB) [> 4.1617 = 6.9362 < 9.0171] w=0.3602 to align # Constraint # added constraint: constraint((T0312)R15.CB, (T0312)H39.CB) [> 3.4790 = 5.7984 < 7.5379] w=0.3592 to align # Constraint # added constraint: constraint((T0312)R15.CB, (T0312)A37.CB) [> 3.6602 = 6.1004 < 7.9305] w=0.3592 to align # Constraint # added constraint: constraint((T0312)L14.CB, (T0312)H39.CB) [> 4.2873 = 7.1455 < 9.2892] w=0.3592 to align # Constraint # added constraint: constraint((T0312)L14.CB, (T0312)A38.CB) [> 2.9906 = 4.9842 < 6.4795] w=0.3592 to align # Constraint # added constraint: constraint((T0312)L14.CB, (T0312)A37.CB) [> 4.5462 = 7.5770 < 9.8501] w=0.3592 to align # Constraint # added constraint: constraint((T0312)L13.CB, (T0312)H36.CB) [> 4.1112 = 6.8520 < 8.9076] w=0.3592 to align # Constraint # added constraint: constraint((T0312)E71.CB, (T0312)K96.CB) [> 3.8561 = 6.4268 < 8.3548] w=0.3579 to align # Constraint # added constraint: constraint((T0312)G77.CA, (T0312)C88.CB) [> 4.1073 = 6.8456 < 8.8993] w=0.3574 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)N78.CB) [> 3.6869 = 6.1448 < 7.9883] w=0.3569 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)N78.CB) [> 3.9397 = 6.5662 < 8.5361] w=0.3569 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)N78.CB) [> 3.8952 = 6.4920 < 8.4396] w=0.3569 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)A42.CB) [> 4.3316 = 7.2193 < 9.3851] w=0.3569 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)L105.CB) [> 2.9353 = 4.8922 < 6.3598] w=0.3547 to align # Constraint # added constraint: constraint((T0312)G44.CA, (T0312)S74.CB) [> 4.1635 = 6.9391 < 9.0209] w=0.3537 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)S76.CB) [> 4.5314 = 7.5523 < 9.8180] w=0.3485 to align # Constraint # added constraint: constraint((T0312)E27.CB, (T0312)H39.CB) [> 3.1752 = 5.2920 < 6.8796] w=0.3467 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)S74.CB) [> 4.3633 = 7.2722 < 9.4539] w=0.3467 to align # Constraint # added constraint: constraint((T0312)L73.CB, (T0312)V92.CB) [> 3.8553 = 6.4255 < 8.3532] w=0.3463 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)E71.CB) [> 4.0611 = 6.7685 < 8.7991] w=0.3446 to align # Constraint # added constraint: constraint((T0312)L70.CB, (T0312)K96.CB) [> 2.7696 = 4.6161 < 6.0009] w=0.3433 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)A37.CB) [> 4.4663 = 7.4439 < 9.6771] w=0.3409 to align # Constraint # added constraint: constraint((T0312)L93.CB, (T0312)H104.CB) [> 3.8899 = 6.4832 < 8.4282] w=0.3403 to align # Constraint # added constraint: constraint((T0312)Y54.CB, (T0312)E68.CB) [> 3.9449 = 6.5749 < 8.5473] w=0.3390 to align # Constraint # added constraint: constraint((T0312)V92.CB, (T0312)G103.CA) [> 3.4776 = 5.7959 < 7.5347] w=0.3386 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)L94.CB) [> 3.4751 = 5.7919 < 7.5294] w=0.3367 to align # Constraint # added constraint: constraint((T0312)G11.CA, (T0312)H36.CB) [> 3.5271 = 5.8784 < 7.6420] w=0.3357 to align # Constraint # added constraint: constraint((T0312)F12.CB, (T0312)A37.CB) [> 4.6416 = 7.7360 < 10.0568] w=0.3357 to align # Constraint # added constraint: constraint((T0312)R15.CB, (T0312)I26.CB) [> 3.2090 = 5.3483 < 6.9527] w=0.3357 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)G77.CA) [> 4.4681 = 7.4468 < 9.6808] w=0.3343 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)A108.CB) [> 4.1853 = 6.9755 < 9.0681] w=0.3295 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)L105.CB) [> 3.7799 = 6.2998 < 8.1898] w=0.3295 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)R47.CB) [> 3.1006 = 5.1677 < 6.7180] w=0.3270 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)I51.CB) [> 4.2742 = 7.1237 < 9.2607] w=0.3270 to align # Constraint # added constraint: constraint((T0312)V92.CB, (T0312)V115.CB) [> 3.7767 = 6.2945 < 8.1829] w=0.3259 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)L75.CB) [> 4.3672 = 7.2787 < 9.4623] w=0.3249 to align # Constraint # added constraint: constraint((T0312)G44.CA, (T0312)I72.CB) [> 3.5884 = 5.9807 < 7.7749] w=0.3245 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)H104.CB) [> 3.3401 = 5.5668 < 7.2368] w=0.3240 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)V46.CB) [> 3.8650 = 6.4417 < 8.3743] w=0.3237 to align # Constraint # added constraint: constraint((T0312)R47.CB, (T0312)M67.CB) [> 3.9771 = 6.6284 < 8.6169] w=0.3193 to align # Constraint # added constraint: constraint((T0312)Y54.CB, (T0312)E71.CB) [> 3.3050 = 5.5083 < 7.1608] w=0.3184 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)I72.CB) [> 3.4200 = 5.6999 < 7.4099] w=0.3184 to align # Constraint # added constraint: constraint((T0312)K33.CB, (T0312)S76.CB) [> 3.5237 = 5.8728 < 7.6347] w=0.3184 to align # Constraint # added constraint: constraint((T0312)F29.CB, (T0312)S74.CB) [> 3.2225 = 5.3708 < 6.9820] w=0.3184 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)S74.CB) [> 3.4223 = 5.7038 < 7.4149] w=0.3184 to align # Constraint # added constraint: constraint((T0312)Q25.CB, (T0312)S74.CB) [> 3.2508 = 5.4181 < 7.0435] w=0.3184 to align # Constraint # added constraint: constraint((T0312)G11.CA, (T0312)F29.CB) [> 4.7483 = 7.9139 < 10.2881] w=0.3173 to align # Constraint # added constraint: constraint((T0312)F12.CB, (T0312)F29.CB) [> 2.9188 = 4.8647 < 6.3241] w=0.3173 to align # Constraint # added constraint: constraint((T0312)S48.CB, (T0312)E109.CB) [> 2.3871 = 3.9786 < 5.1721] w=0.3134 to align # Constraint # added constraint: constraint((T0312)R47.CB, (T0312)V110.CB) [> 4.1796 = 6.9660 < 9.0557] w=0.3134 to align # Constraint # added constraint: constraint((T0312)R47.CB, (T0312)E109.CB) [> 2.6430 = 4.4050 < 5.7266] w=0.3134 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)V110.CB) [> 3.1762 = 5.2937 < 6.8818] w=0.3134 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)E109.CB) [> 3.6821 = 6.1368 < 7.9778] w=0.3134 to align # Constraint # added constraint: constraint((T0312)A45.CB, (T0312)V110.CB) [> 4.5543 = 7.5906 < 9.8678] w=0.3134 to align # Constraint # added constraint: constraint((T0312)G11.CA, (T0312)I35.CB) [> 3.5283 = 5.8804 < 7.6446] w=0.3122 to align # Constraint # added constraint: constraint((T0312)F12.CB, (T0312)I35.CB) [> 4.4281 = 7.3802 < 9.5942] w=0.3122 to align # Constraint # added constraint: constraint((T0312)F12.CB, (T0312)H36.CB) [> 2.9004 = 4.8341 < 6.2843] w=0.3122 to align # Constraint # added constraint: constraint((T0312)L13.CB, (T0312)L30.CB) [> 3.4192 = 5.6987 < 7.4083] w=0.3122 to align # Constraint # added constraint: constraint((T0312)L13.CB, (T0312)I35.CB) [> 3.0785 = 5.1308 < 6.6701] w=0.3122 to align # Constraint # added constraint: constraint((T0312)L16.CB, (T0312)H39.CB) [> 4.4481 = 7.4135 < 9.6376] w=0.3122 to align # Constraint # added constraint: constraint((T0312)Y53.CB, (T0312)G103.CA) [> 3.3713 = 5.6189 < 7.3046] w=0.3108 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)V117.CB) [> 4.1474 = 6.9123 < 8.9860] w=0.3072 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)V117.CB) [> 3.6271 = 6.0452 < 7.8588] w=0.3072 to align # Constraint # added constraint: constraint((T0312)L73.CB, (T0312)Y101.CB) [> 4.6519 = 7.7532 < 10.0792] w=0.3064 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)G102.CA) [> 3.2201 = 5.3669 < 6.9770] w=0.3014 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)Y101.CB) [> 4.5358 = 7.5597 < 9.8276] w=0.3014 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)A49.CB) [> 3.9404 = 6.5674 < 8.5376] w=0.3010 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)F116.CB) [> 3.7467 = 6.2446 < 8.1179] w=0.2995 to align # Constraint # added constraint: constraint((T0312)C88.CB, (T0312)V117.CB) [> 3.6906 = 6.1510 < 7.9963] w=0.2995 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)V117.CB) [> 4.0812 = 6.8021 < 8.8427] w=0.2983 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)V92.CB) [> 3.8209 = 6.3682 < 8.2787] w=0.2922 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)S76.CB) [> 4.5528 = 7.5881 < 9.8645] w=0.2906 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)F116.CB) [> 4.7712 = 7.9520 < 10.3376] w=0.2873 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)L118.CB) [> 2.5356 = 4.2260 < 5.4938] w=0.2873 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)L120.CB) [> 4.2500 = 7.0834 < 9.2084] w=0.2873 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)V79.CB) [> 4.0999 = 6.8333 < 8.8832] w=0.2873 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)V115.CB) [> 4.0942 = 6.8237 < 8.8708] w=0.2873 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)F116.CB) [> 4.1615 = 6.9358 < 9.0166] w=0.2873 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)V117.CB) [> 3.5405 = 5.9008 < 7.6710] w=0.2873 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)E114.CB) [> 4.7698 = 7.9497 < 10.3346] w=0.2873 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)F116.CB) [> 2.4978 = 4.1631 < 5.4120] w=0.2873 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)V117.CB) [> 4.7976 = 7.9961 < 10.3949] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)V110.CB) [> 4.2320 = 7.0533 < 9.1693] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)C113.CB) [> 3.1237 = 5.2062 < 6.7681] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)E114.CB) [> 4.2617 = 7.1027 < 9.2336] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)V115.CB) [> 3.2193 = 5.3656 < 6.9752] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)F116.CB) [> 4.6406 = 7.7343 < 10.0546] w=0.2873 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)C113.CB) [> 3.6877 = 6.1461 < 7.9900] w=0.2873 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)A108.CB) [> 4.5539 = 7.5899 < 9.8668] w=0.2873 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)V110.CB) [> 3.4794 = 5.7991 < 7.5388] w=0.2873 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)V79.CB) [> 4.4384 = 7.3974 < 9.6166] w=0.2873 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)V117.CB) [> 3.8769 = 6.4615 < 8.3999] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)V79.CB) [> 3.8486 = 6.4143 < 8.3386] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)S80.CB) [> 3.5851 = 5.9752 < 7.7678] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)L120.CB) [> 2.5097 = 4.1828 < 5.4377] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)V79.CB) [> 2.5708 = 4.2846 < 5.5700] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)L118.CB) [> 3.8154 = 6.3591 < 8.2668] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)P119.CB) [> 2.9971 = 4.9951 < 6.4936] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)L120.CB) [> 3.7388 = 6.2313 < 8.1006] w=0.2873 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)V79.CB) [> 4.5981 = 7.6635 < 9.9626] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)A108.CB) [> 3.0234 = 5.0389 < 6.5506] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)E109.CB) [> 4.7061 = 7.8434 < 10.1965] w=0.2873 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)L105.CB) [> 4.4237 = 7.3728 < 9.5846] w=0.2873 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)S107.CB) [> 2.7590 = 4.5983 < 5.9778] w=0.2873 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)A108.CB) [> 3.9171 = 6.5286 < 8.4871] w=0.2873 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)G103.CA) [> 2.4418 = 4.0697 < 5.2906] w=0.2873 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)H104.CB) [> 3.6134 = 6.0224 < 7.8291] w=0.2873 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)L105.CB) [> 3.6050 = 6.0083 < 7.8108] w=0.2873 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)F106.CB) [> 3.9817 = 6.6361 < 8.6270] w=0.2873 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)G103.CA) [> 3.3468 = 5.5780 < 7.2513] w=0.2873 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)H104.CB) [> 3.0657 = 5.1095 < 6.6424] w=0.2873 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)F106.CB) [> 3.7667 = 6.2779 < 8.1612] w=0.2873 to align # Constraint # added constraint: constraint((T0312)Y53.CB, (T0312)G102.CA) [> 4.4658 = 7.4429 < 9.6758] w=0.2873 to align # Constraint # added constraint: constraint((T0312)Y53.CB, (T0312)H104.CB) [> 4.2913 = 7.1521 < 9.2978] w=0.2873 to align # Constraint # added constraint: constraint((T0312)L73.CB, (T0312)G102.CA) [> 4.5306 = 7.5509 < 9.8162] w=0.2873 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)E114.CB) [> 3.1457 = 5.2428 < 6.8157] w=0.2873 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)F116.CB) [> 4.7213 = 7.8688 < 10.2295] w=0.2873 to align # Constraint # added constraint: constraint((T0312)G44.CA, (T0312)V110.CB) [> 4.6107 = 7.6844 < 9.9897] w=0.2873 to align # Constraint # added constraint: constraint((T0312)G44.CA, (T0312)F111.CB) [> 4.7299 = 7.8832 < 10.2481] w=0.2873 to align # Constraint # added constraint: constraint((T0312)G44.CA, (T0312)A112.CB) [> 3.7071 = 6.1785 < 8.0321] w=0.2873 to align # Constraint # added constraint: constraint((T0312)G44.CA, (T0312)C113.CB) [> 2.5774 = 4.2956 < 5.5843] w=0.2873 to align # Constraint # added constraint: constraint((T0312)G44.CA, (T0312)E114.CB) [> 3.8201 = 6.3668 < 8.2768] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A45.CB, (T0312)F111.CB) [> 2.6748 = 4.4579 < 5.7953] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A45.CB, (T0312)A112.CB) [> 3.0370 = 5.0617 < 6.5802] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A45.CB, (T0312)C113.CB) [> 4.1139 = 6.8566 < 8.9135] w=0.2873 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)L73.CB) [> 4.0166 = 6.6943 < 8.7025] w=0.2873 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)A108.CB) [> 3.2299 = 5.3831 < 6.9980] w=0.2873 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)F111.CB) [> 3.6372 = 6.0619 < 7.8805] w=0.2873 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)C113.CB) [> 4.1961 = 6.9934 < 9.0915] w=0.2873 to align # Constraint # added constraint: constraint((T0312)R47.CB, (T0312)F111.CB) [> 2.6996 = 4.4994 < 5.8492] w=0.2873 to align # Constraint # added constraint: constraint((T0312)S48.CB, (T0312)S107.CB) [> 4.3245 = 7.2075 < 9.3697] w=0.2873 to align # Constraint # added constraint: constraint((T0312)S48.CB, (T0312)A108.CB) [> 3.4388 = 5.7314 < 7.4508] w=0.2873 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)L105.CB) [> 4.4699 = 7.4497 < 9.6847] w=0.2873 to align # Constraint # added constraint: constraint((T0312)I72.CB, (T0312)G95.CA) [> 3.6542 = 6.0903 < 7.9174] w=0.2867 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)I90.CB) [> 3.8587 = 6.4311 < 8.3605] w=0.2857 to align # Constraint # added constraint: constraint((T0312)G77.CA, (T0312)L93.CB) [> 3.5901 = 5.9835 < 7.7786] w=0.2839 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)L105.CB) [> 3.4489 = 5.7482 < 7.4726] w=0.2827 to align # Constraint # added constraint: constraint((T0312)L73.CB, (T0312)L93.CB) [> 3.6420 = 6.0700 < 7.8909] w=0.2759 to align # Constraint # added constraint: constraint((T0312)V100.CB, (T0312)V115.CB) [> 3.3754 = 5.6256 < 7.3133] w=0.2748 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)G95.CA) [> 4.5365 = 7.5608 < 9.8290] w=0.2698 to align # Constraint # added constraint: constraint((T0312)S48.CB, (T0312)M67.CB) [> 3.7887 = 6.3146 < 8.2089] w=0.2698 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)A49.CB) [> 3.9949 = 6.6582 < 8.6556] w=0.2687 to align # Constraint # added constraint: constraint((T0312)I72.CB, (T0312)L94.CB) [> 3.8386 = 6.3976 < 8.3169] w=0.2673 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)L66.CB) [> 4.6140 = 7.6900 < 9.9970] w=0.2648 to align # Constraint # added constraint: constraint((T0312)I72.CB, (T0312)K96.CB) [> 3.8666 = 6.4444 < 8.3777] w=0.2632 to align # Constraint # added constraint: constraint((T0312)L70.CB, (T0312)D97.CB) [> 3.8356 = 6.3926 < 8.3104] w=0.2630 to align # Constraint # added constraint: constraint((T0312)S76.CB, (T0312)I90.CB) [> 3.9939 = 6.6565 < 8.6534] w=0.2606 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)I72.CB) [> 4.4083 = 7.3471 < 9.5512] w=0.2580 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)E71.CB) [> 3.9474 = 6.5791 < 8.5528] w=0.2580 to align # Constraint # added constraint: constraint((T0312)A45.CB, (T0312)I72.CB) [> 3.3459 = 5.5765 < 7.2495] w=0.2580 to align # Constraint # added constraint: constraint((T0312)A45.CB, (T0312)E71.CB) [> 3.7752 = 6.2920 < 8.1797] w=0.2580 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)V92.CB) [> 4.4240 = 7.3734 < 9.5854] w=0.2578 to align # Constraint # added constraint: constraint((T0312)S74.CB, (T0312)L93.CB) [> 3.9386 = 6.5644 < 8.5337] w=0.2560 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)V46.CB) [> 3.3536 = 5.5893 < 7.2661] w=0.2532 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)A49.CB) [> 4.0646 = 6.7743 < 8.8066] w=0.2488 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)I72.CB) [> 4.4866 = 7.4776 < 9.7209] w=0.2488 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)S74.CB) [> 2.7848 = 4.6414 < 6.0338] w=0.2488 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)I72.CB) [> 4.2307 = 7.0512 < 9.1666] w=0.2488 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)L73.CB) [> 2.6862 = 4.4771 < 5.8202] w=0.2488 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)S74.CB) [> 4.3472 = 7.2453 < 9.4189] w=0.2488 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)L75.CB) [> 4.5541 = 7.5902 < 9.8673] w=0.2488 to align # Constraint # added constraint: constraint((T0312)S74.CB, (T0312)I90.CB) [> 3.9688 = 6.6146 < 8.5990] w=0.2400 to align # Constraint # added constraint: constraint((T0312)I72.CB, (T0312)V92.CB) [> 4.5017 = 7.5029 < 9.7538] w=0.2400 to align # Constraint # added constraint: constraint((T0312)S76.CB, (T0312)L94.CB) [> 4.5226 = 7.5377 < 9.7990] w=0.2386 to align # Constraint # added constraint: constraint((T0312)S76.CB, (T0312)H91.CB) [> 3.4234 = 5.7056 < 7.4173] w=0.2380 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)H91.CB) [> 4.0440 = 6.7399 < 8.7619] w=0.2380 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)C113.CB) [> 3.8844 = 6.4739 < 8.4161] w=0.2369 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)H104.CB) [> 4.3107 = 7.1845 < 9.3399] w=0.2361 to align # Constraint # added constraint: constraint((T0312)L14.CB, (T0312)I40.CB) [> 3.8340 = 6.3899 < 8.3069] w=0.2350 to align # Constraint # added constraint: constraint((T0312)V79.CB, (T0312)H91.CB) [> 4.6726 = 7.7876 < 10.1239] w=0.2337 to align # Constraint # added constraint: constraint((T0312)S80.CB, (T0312)H91.CB) [> 4.0897 = 6.8163 < 8.8611] w=0.2337 to align # Constraint # added constraint: constraint((T0312)L94.CB, (T0312)A108.CB) [> 4.3402 = 7.2337 < 9.4039] w=0.2337 to align # Constraint # added constraint: constraint((T0312)Y54.CB, (T0312)P69.CB) [> 4.1241 = 6.8736 < 8.9357] w=0.2334 to align # Constraint # added constraint: constraint((T0312)H89.CB, (T0312)V117.CB) [> 3.5885 = 5.9808 < 7.7750] w=0.2330 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)L73.CB) [> 3.9635 = 6.6058 < 8.5875] w=0.2322 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)L118.CB) [> 3.9972 = 6.6620 < 8.6607] w=0.2319 to align # Constraint # added constraint: constraint((T0312)I72.CB, (T0312)I90.CB) [> 4.2968 = 7.1613 < 9.3097] w=0.2314 to align # Constraint # added constraint: constraint((T0312)S74.CB, (T0312)V92.CB) [> 3.9093 = 6.5154 < 8.4701] w=0.2262 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)V115.CB) [> 3.3463 = 5.5772 < 7.2504] w=0.2257 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)V115.CB) [> 3.4190 = 5.6984 < 7.4079] w=0.2217 to align # Constraint # added constraint: constraint((T0312)F6.CB, (T0312)K33.CB) [> 3.8749 = 6.4581 < 8.3955] w=0.2216 to align # Constraint # added constraint: constraint((T0312)V8.CB, (T0312)K33.CB) [> 4.6450 = 7.7417 < 10.0641] w=0.2216 to align # Constraint # added constraint: constraint((T0312)D17.CB, (T0312)I26.CB) [> 4.0520 = 6.7533 < 8.7793] w=0.2215 to align # Constraint # added constraint: constraint((T0312)V92.CB, (T0312)Y101.CB) [> 3.8795 = 6.4658 < 8.4056] w=0.2214 to align # Constraint # added constraint: constraint((T0312)H89.CB, (T0312)F116.CB) [> 3.8330 = 6.3883 < 8.3047] w=0.2205 to align # Constraint # added constraint: constraint((T0312)F87.CB, (T0312)L118.CB) [> 4.1601 = 6.9335 < 9.0136] w=0.2205 to align # Constraint # added constraint: constraint((T0312)F87.CB, (T0312)V117.CB) [> 3.7559 = 6.2598 < 8.1378] w=0.2205 to align # Constraint # added constraint: constraint((T0312)F116.CB, (T0312)A128.CB) [> 3.4538 = 5.7563 < 7.4832] w=0.2157 to align # Constraint # added constraint: constraint((T0312)V115.CB, (T0312)A128.CB) [> 4.0337 = 6.7228 < 8.7396] w=0.2157 to align # Constraint # added constraint: constraint((T0312)V100.CB, (T0312)E114.CB) [> 4.1212 = 6.8687 < 8.9293] w=0.2157 to align # Constraint # added constraint: constraint((T0312)Y101.CB, (T0312)E114.CB) [> 4.2895 = 7.1492 < 9.2940] w=0.2157 to align # Constraint # added constraint: constraint((T0312)Y101.CB, (T0312)V115.CB) [> 3.3921 = 5.6535 < 7.3495] w=0.2157 to align # Constraint # added constraint: constraint((T0312)C88.CB, (T0312)L120.CB) [> 3.9031 = 6.5052 < 8.4567] w=0.2131 to align # Constraint # added constraint: constraint((T0312)F87.CB, (T0312)L120.CB) [> 4.4705 = 7.4508 < 9.6861] w=0.2131 to align # Constraint # added constraint: constraint((T0312)F87.CB, (T0312)P119.CB) [> 3.2685 = 5.4476 < 7.0819] w=0.2131 to align # Constraint # added constraint: constraint((T0312)L94.CB, (T0312)V115.CB) [> 3.2249 = 5.3748 < 6.9873] w=0.2120 to align # Constraint # added constraint: constraint((T0312)L16.CB, (T0312)I40.CB) [> 3.3599 = 5.5998 < 7.2798] w=0.2115 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)P119.CB) [> 3.2910 = 5.4850 < 7.1305] w=0.2114 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)Y61.CB) [> 2.9568 = 4.9280 < 6.4064] w=0.2112 to align # Constraint # added constraint: constraint((T0312)G102.CA, (T0312)V115.CB) [> 3.9752 = 6.6254 < 8.6130] w=0.2083 to align # Constraint # added constraint: constraint((T0312)G102.CA, (T0312)A112.CB) [> 3.8291 = 6.3819 < 8.2965] w=0.2083 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)G77.CA) [> 3.7218 = 6.2030 < 8.0639] w=0.2082 to align # Constraint # added constraint: constraint((T0312)F129.CB, (T0312)W138.CB) [> 4.5374 = 7.5623 < 9.8310] w=0.2068 to align # Constraint # added constraint: constraint((T0312)L73.CB, (T0312)H91.CB) [> 4.4151 = 7.3585 < 9.5660] w=0.2067 to align # Constraint # added constraint: constraint((T0312)V23.CB, (T0312)H89.CB) [> 4.6520 = 7.7533 < 10.0793] w=0.2057 to align # Constraint # added constraint: constraint((T0312)V23.CB, (T0312)I90.CB) [> 3.4706 = 5.7843 < 7.5195] w=0.2057 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)L94.CB) [> 3.5482 = 5.9136 < 7.6877] w=0.2057 to align # Constraint # added constraint: constraint((T0312)L93.CB, (T0312)L105.CB) [> 3.9193 = 6.5322 < 8.4918] w=0.2045 to align # Constraint # added constraint: constraint((T0312)Y53.CB, (T0312)P69.CB) [> 3.3754 = 5.6257 < 7.3134] w=0.2040 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)A42.CB) [> 3.8077 = 6.3462 < 8.2500] w=0.2034 to align # Constraint # added constraint: constraint((T0312)P86.CB, (T0312)P119.CB) [> 4.5864 = 7.6441 < 9.9373] w=0.1994 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)L75.CB) [> 3.9594 = 6.5990 < 8.5787] w=0.1974 to align # Constraint # added constraint: constraint((T0312)M67.CB, (T0312)G98.CA) [> 4.0057 = 6.6762 < 8.6791] w=0.1965 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)I90.CB) [> 3.6736 = 6.1226 < 7.9594] w=0.1946 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)I90.CB) [> 4.1214 = 6.8690 < 8.9297] w=0.1946 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)H91.CB) [> 4.0737 = 6.7896 < 8.8265] w=0.1946 to align # Constraint # added constraint: constraint((T0312)K85.CB, (T0312)S121.CB) [> 3.1170 = 5.1950 < 6.7535] w=0.1920 to align # Constraint # added constraint: constraint((T0312)G34.CA, (T0312)D83.CB) [> 4.4647 = 7.4412 < 9.6735] w=0.1915 to align # Constraint # added constraint: constraint((T0312)E32.CB, (T0312)P119.CB) [> 4.2537 = 7.0895 < 9.2164] w=0.1915 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)I90.CB) [> 4.6279 = 7.7132 < 10.0271] w=0.1915 to align # Constraint # added constraint: constraint((T0312)L94.CB, (T0312)L105.CB) [> 3.0617 = 5.1028 < 6.6337] w=0.1915 to align # Constraint # added constraint: constraint((T0312)L94.CB, (T0312)G103.CA) [> 3.3391 = 5.5651 < 7.2347] w=0.1915 to align # Constraint # added constraint: constraint((T0312)L66.CB, (T0312)Y101.CB) [> 3.7740 = 6.2900 < 8.1770] w=0.1915 to align # Constraint # added constraint: constraint((T0312)K64.CB, (T0312)G102.CA) [> 4.5990 = 7.6649 < 9.9644] w=0.1915 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)L94.CB) [> 3.6838 = 6.1397 < 7.9816] w=0.1915 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)V92.CB) [> 4.0172 = 6.6953 < 8.7039] w=0.1915 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)L120.CB) [> 3.6609 = 6.1014 < 7.9318] w=0.1915 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)M81.CB) [> 3.6114 = 6.0189 < 7.8246] w=0.1915 to align # Constraint # added constraint: constraint((T0312)S74.CB, (T0312)H91.CB) [> 4.1381 = 6.8968 < 8.9659] w=0.1876 to align # Constraint # added constraint: constraint((T0312)S74.CB, (T0312)H89.CB) [> 3.1653 = 5.2755 < 6.8582] w=0.1849 to align # Constraint # added constraint: constraint((T0312)L73.CB, (T0312)I90.CB) [> 3.1417 = 5.2361 < 6.8069] w=0.1849 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)L73.CB) [> 3.8827 = 6.4712 < 8.4125] w=0.1847 to align # Constraint # added constraint: constraint((T0312)I72.CB, (T0312)H91.CB) [> 3.5286 = 5.8810 < 7.6452] w=0.1832 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)L73.CB) [> 4.4623 = 7.4372 < 9.6683] w=0.1823 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)I72.CB) [> 2.8267 = 4.7111 < 6.1245] w=0.1823 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)I72.CB) [> 4.2840 = 7.1400 < 9.2820] w=0.1823 to align # Constraint # added constraint: constraint((T0312)S74.CB, (T0312)C88.CB) [> 4.0874 = 6.8123 < 8.8560] w=0.1779 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)V117.CB) [> 4.3952 = 7.3253 < 9.5229] w=0.1776 to align # Constraint # added constraint: constraint((T0312)I72.CB, (T0312)H89.CB) [> 3.6486 = 6.0810 < 7.9053] w=0.1773 to align # Constraint # added constraint: constraint((T0312)Y61.CB, (T0312)L75.CB) [> 3.1916 = 5.3194 < 6.9152] w=0.1773 to align # Constraint # added constraint: constraint((T0312)Y53.CB, (T0312)L75.CB) [> 2.9176 = 4.8626 < 6.3214] w=0.1773 to align # Constraint # added constraint: constraint((T0312)A128.CB, (T0312)L139.CB) [> 3.8186 = 6.3643 < 8.2736] w=0.1751 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)I90.CB) [> 3.3953 = 5.6589 < 7.3565] w=0.1747 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)H89.CB) [> 4.1597 = 6.9329 < 9.0127] w=0.1747 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)H91.CB) [> 4.3335 = 7.2224 < 9.3892] w=0.1747 to align # Constraint # added constraint: constraint((T0312)L70.CB, (T0312)V92.CB) [> 4.0772 = 6.7954 < 8.8340] w=0.1734 to align # Constraint # added constraint: constraint((T0312)V92.CB, (T0312)F116.CB) [> 3.9113 = 6.5188 < 8.4744] w=0.1728 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)C88.CB) [> 3.8036 = 6.3392 < 8.2410] w=0.1715 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)G102.CA) [> 3.7956 = 6.3260 < 8.2238] w=0.1706 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)F116.CB) [> 3.6546 = 6.0909 < 7.9182] w=0.1666 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)V115.CB) [> 3.6930 = 6.1550 < 8.0015] w=0.1642 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)Y101.CB) [> 3.9989 = 6.6648 < 8.6643] w=0.1617 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)I72.CB) [> 4.1319 = 6.8865 < 8.9524] w=0.1588 to align # Constraint # added constraint: constraint((T0312)V117.CB, (T0312)R127.CB) [> 3.2591 = 5.4319 < 7.0615] w=0.1566 to align # Constraint # added constraint: constraint((T0312)F116.CB, (T0312)R127.CB) [> 3.8522 = 6.4203 < 8.3464] w=0.1566 to align # Constraint # added constraint: constraint((T0312)V115.CB, (T0312)F129.CB) [> 3.1284 = 5.2140 < 6.7782] w=0.1566 to align # Constraint # added constraint: constraint((T0312)L13.CB, (T0312)I40.CB) [> 3.5742 = 5.9571 < 7.7442] w=0.1564 to align # Constraint # added constraint: constraint((T0312)F12.CB, (T0312)I40.CB) [> 4.5582 = 7.5970 < 9.8761] w=0.1564 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)L73.CB) [> 3.2137 = 5.3562 < 6.9630] w=0.1540 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)G103.CA) [> 3.5561 = 5.9269 < 7.7049] w=0.1533 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)C88.CB) [> 4.2068 = 7.0113 < 9.1147] w=0.1528 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)H91.CB) [> 2.9963 = 4.9939 < 6.4920] w=0.1528 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)L93.CB) [> 4.1615 = 6.9359 < 9.0166] w=0.1528 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)H91.CB) [> 3.9180 = 6.5300 < 8.4889] w=0.1528 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)L93.CB) [> 4.2154 = 7.0258 < 9.1335] w=0.1528 to align # Constraint # added constraint: constraint((T0312)C88.CB, (T0312)F111.CB) [> 3.9901 = 6.6502 < 8.6453] w=0.1517 to align # Constraint # added constraint: constraint((T0312)F87.CB, (T0312)F111.CB) [> 3.6673 = 6.1121 < 7.9457] w=0.1517 to align # Constraint # added constraint: constraint((T0312)P86.CB, (T0312)F111.CB) [> 4.0242 = 6.7070 < 8.7191] w=0.1517 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)C88.CB) [> 3.4299 = 5.7165 < 7.4314] w=0.1515 to align # Constraint # added constraint: constraint((T0312)G103.CA, (T0312)C113.CB) [> 4.1156 = 6.8594 < 8.9172] w=0.1492 to align # Constraint # added constraint: constraint((T0312)G102.CA, (T0312)E114.CB) [> 4.7816 = 7.9694 < 10.3602] w=0.1492 to align # Constraint # added constraint: constraint((T0312)A45.CB, (T0312)H89.CB) [> 3.7362 = 6.2270 < 8.0950] w=0.1488 to align # Constraint # added constraint: constraint((T0312)E7.CB, (T0312)A49.CB) [> 4.5799 = 7.6331 < 9.9230] w=0.1477 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)I90.CB) [> 3.7529 = 6.2549 < 8.1313] w=0.1469 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)Y101.CB) [> 3.6613 = 6.1021 < 7.9327] w=0.1430 to align # Constraint # added constraint: constraint((T0312)E99.CB, (T0312)F116.CB) [> 3.9886 = 6.6476 < 8.6419] w=0.1419 to align # Constraint # added constraint: constraint((T0312)V100.CB, (T0312)V117.CB) [> 3.5280 = 5.8800 < 7.6440] w=0.1419 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)V115.CB) [> 4.2095 = 7.0158 < 9.1205] w=0.1381 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)V117.CB) [> 4.4915 = 7.4858 < 9.7316] w=0.1381 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)V117.CB) [> 3.7524 = 6.2540 < 8.1301] w=0.1381 to align # Constraint # added constraint: constraint((T0312)H89.CB, (T0312)V110.CB) [> 3.9783 = 6.6304 < 8.6196] w=0.1347 to align # Constraint # added constraint: constraint((T0312)V92.CB, (T0312)C113.CB) [> 4.0467 = 6.7445 < 8.7678] w=0.1336 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)V92.CB) [> 3.0443 = 5.0739 < 6.5961] w=0.1329 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)L93.CB) [> 2.8996 = 4.8326 < 6.2824] w=0.1329 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)V92.CB) [> 4.3268 = 7.2114 < 9.3748] w=0.1329 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)L93.CB) [> 4.2514 = 7.0856 < 9.2113] w=0.1329 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)L137.CB) [> 3.7320 = 6.2199 < 8.0859] w=0.1329 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)G95.CA) [> 3.2317 = 5.3862 < 7.0021] w=0.1329 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)C88.CB) [> 3.7864 = 6.3107 < 8.2039] w=0.1329 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)I90.CB) [> 4.5732 = 7.6220 < 9.9085] w=0.1329 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)H89.CB) [> 2.2951 = 3.8251 < 4.9727] w=0.1329 to align # Constraint # added constraint: constraint((T0312)L13.CB, (T0312)L93.CB) [> 3.9134 = 6.5223 < 8.4789] w=0.1329 to align # Constraint # added constraint: constraint((T0312)L13.CB, (T0312)H91.CB) [> 4.0766 = 6.7944 < 8.8327] w=0.1329 to align # Constraint # added constraint: constraint((T0312)G11.CA, (T0312)G95.CA) [> 4.2202 = 7.0336 < 9.1437] w=0.1329 to align # Constraint # added constraint: constraint((T0312)G11.CA, (T0312)I40.CB) [> 4.3075 = 7.1792 < 9.3329] w=0.1329 to align # Constraint # added constraint: constraint((T0312)A124.CB, (T0312)L139.CB) [> 3.4137 = 5.6894 < 7.3962] w=0.1329 to align # Constraint # added constraint: constraint((T0312)Y101.CB, (T0312)L137.CB) [> 4.2197 = 7.0328 < 9.1426] w=0.1329 to align # Constraint # added constraint: constraint((T0312)S84.CB, (T0312)L120.CB) [> 4.1298 = 6.8829 < 8.9478] w=0.1329 to align # Constraint # added constraint: constraint((T0312)M81.CB, (T0312)W138.CB) [> 3.2058 = 5.3430 < 6.9460] w=0.1329 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)I72.CB) [> 3.7324 = 6.2206 < 8.0868] w=0.1329 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)E99.CB) [> 2.7701 = 4.6169 < 6.0020] w=0.1329 to align # Constraint # added constraint: constraint((T0312)S80.CB, (T0312)F136.CB) [> 3.3664 = 5.6106 < 7.2938] w=0.1329 to align # Constraint # added constraint: constraint((T0312)S80.CB, (T0312)L137.CB) [> 4.5114 = 7.5191 < 9.7748] w=0.1329 to align # Constraint # added constraint: constraint((T0312)S80.CB, (T0312)W138.CB) [> 4.0451 = 6.7419 < 8.7645] w=0.1329 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)L73.CB) [> 4.1389 = 6.8982 < 8.9676] w=0.1305 to align # Constraint # added constraint: constraint((T0312)P86.CB, (T0312)E109.CB) [> 4.7448 = 7.9081 < 10.2805] w=0.1291 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)L75.CB) [> 3.8521 = 6.4202 < 8.3463] w=0.1278 to align # Constraint # added constraint: constraint((T0312)C88.CB, (T0312)A112.CB) [> 3.7346 = 6.2244 < 8.0917] w=0.1274 to align # Constraint # added constraint: constraint((T0312)C88.CB, (T0312)L105.CB) [> 3.3275 = 5.5458 < 7.2095] w=0.1257 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)H39.CB) [> 3.8193 = 6.3655 < 8.2752] w=0.1252 to align # Constraint # added constraint: constraint((T0312)L16.CB, (T0312)I26.CB) [> 4.4555 = 7.4258 < 9.6535] w=0.1252 to align # Constraint # added constraint: constraint((T0312)C113.CB, (T0312)F129.CB) [> 3.7095 = 6.1824 < 8.0372] w=0.1249 to align # Constraint # added constraint: constraint((T0312)C113.CB, (T0312)F136.CB) [> 3.9107 = 6.5179 < 8.4732] w=0.1249 to align # Constraint # added constraint: constraint((T0312)G9.CA, (T0312)F116.CB) [> 4.1680 = 6.9467 < 9.0307] w=0.1218 to align # Constraint # added constraint: constraint((T0312)G11.CA, (T0312)E114.CB) [> 4.2184 = 7.0307 < 9.1399] w=0.1218 to align # Constraint # added constraint: constraint((T0312)G11.CA, (T0312)V115.CB) [> 3.6753 = 6.1254 < 7.9631] w=0.1218 to align # Constraint # added constraint: constraint((T0312)G11.CA, (T0312)F116.CB) [> 3.0916 = 5.1527 < 6.6986] w=0.1218 to align # Constraint # added constraint: constraint((T0312)F12.CB, (T0312)E114.CB) [> 4.4581 = 7.4302 < 9.6593] w=0.1218 to align # Constraint # added constraint: constraint((T0312)F12.CB, (T0312)V115.CB) [> 3.2817 = 5.4694 < 7.1102] w=0.1218 to align # Constraint # added constraint: constraint((T0312)L13.CB, (T0312)A112.CB) [> 4.5378 = 7.5630 < 9.8318] w=0.1218 to align # Constraint # added constraint: constraint((T0312)L13.CB, (T0312)C113.CB) [> 4.4536 = 7.4227 < 9.6495] w=0.1218 to align # Constraint # added constraint: constraint((T0312)L13.CB, (T0312)E114.CB) [> 3.5246 = 5.8744 < 7.6367] w=0.1218 to align # Constraint # added constraint: constraint((T0312)L13.CB, (T0312)V115.CB) [> 4.4998 = 7.4997 < 9.7496] w=0.1218 to align # Constraint # added constraint: constraint((T0312)L14.CB, (T0312)A112.CB) [> 4.4624 = 7.4373 < 9.6685] w=0.1218 to align # Constraint # added constraint: constraint((T0312)L14.CB, (T0312)C113.CB) [> 3.3745 = 5.6241 < 7.3114] w=0.1218 to align # Constraint # added constraint: constraint((T0312)L14.CB, (T0312)E114.CB) [> 4.6627 = 7.7712 < 10.1026] w=0.1218 to align # Constraint # added constraint: constraint((T0312)R15.CB, (T0312)F111.CB) [> 3.7972 = 6.3287 < 8.2273] w=0.1218 to align # Constraint # added constraint: constraint((T0312)R15.CB, (T0312)A112.CB) [> 2.9227 = 4.8713 < 6.3326] w=0.1218 to align # Constraint # added constraint: constraint((T0312)L16.CB, (T0312)F111.CB) [> 3.6264 = 6.0440 < 7.8572] w=0.1218 to align # Constraint # added constraint: constraint((T0312)L16.CB, (T0312)A112.CB) [> 4.4262 = 7.3770 < 9.5901] w=0.1218 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)I51.CB) [> 4.0865 = 6.8108 < 8.8541] w=0.1218 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)I72.CB) [> 4.1582 = 6.9304 < 9.0095] w=0.1183 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)F116.CB) [> 3.8944 = 6.4907 < 8.4379] w=0.1182 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)F116.CB) [> 4.3964 = 7.3273 < 9.5255] w=0.1182 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)V115.CB) [> 3.2902 = 5.4836 < 7.1287] w=0.1182 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)I90.CB) [> 4.4865 = 7.4775 < 9.7208] w=0.1182 to align # Constraint # added constraint: constraint((T0312)L73.CB, (T0312)H89.CB) [> 4.1167 = 6.8611 < 8.9195] w=0.1182 to align # Constraint # added constraint: constraint((T0312)G77.CA, (T0312)C113.CB) [> 3.2484 = 5.4140 < 7.0382] w=0.1182 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)V100.CB) [> 3.5533 = 5.9221 < 7.6987] w=0.1143 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)L75.CB) [> 3.6837 = 6.1394 < 7.9812] w=0.1135 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)S74.CB) [> 3.8033 = 6.3389 < 8.2405] w=0.1135 to align # Constraint # added constraint: constraint((T0312)S76.CB, (T0312)H89.CB) [> 3.2006 = 5.3344 < 6.9347] w=0.1130 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)V50.CB) [> 3.2544 = 5.4239 < 7.0511] w=0.1119 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)M81.CB) [> 3.6620 = 6.1034 < 7.9344] w=0.1109 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)I90.CB) [> 4.3715 = 7.2858 < 9.4716] w=0.1099 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)C88.CB) [> 4.4337 = 7.3895 < 9.6063] w=0.1099 to align # Constraint # added constraint: constraint((T0312)G77.CA, (T0312)P125.CB) [> 4.6434 = 7.7391 < 10.0608] w=0.1087 to align # Constraint # added constraint: constraint((T0312)S76.CB, (T0312)P125.CB) [> 3.7938 = 6.3230 < 8.2199] w=0.1087 to align # Constraint # added constraint: constraint((T0312)V92.CB, (T0312)E114.CB) [> 4.3168 = 7.1946 < 9.3530] w=0.1075 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)C113.CB) [> 4.4762 = 7.4603 < 9.6985] w=0.1051 to align # Constraint # added constraint: constraint((T0312)V92.CB, (T0312)A112.CB) [> 4.1166 = 6.8610 < 8.9193] w=0.1038 to align # Constraint # added constraint: constraint((T0312)L118.CB, (T0312)R127.CB) [> 3.8227 = 6.3711 < 8.2824] w=0.1027 to align # Constraint # added constraint: constraint((T0312)V62.CB, (T0312)N78.CB) [> 4.3279 = 7.2132 < 9.3772] w=0.1027 to align # Constraint # added constraint: constraint((T0312)C88.CB, (T0312)C113.CB) [> 2.5677 = 4.2794 < 5.5633] w=0.1013 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)H91.CB) [> 4.3418 = 7.2364 < 9.4073] w=0.0994 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)I72.CB) [> 3.7883 = 6.3138 < 8.2079] w=0.0992 to align # Constraint # added constraint: constraint((T0312)L93.CB, (T0312)V117.CB) [> 3.8916 = 6.4860 < 8.4318] w=0.0986 to align # Constraint # added constraint: constraint((T0312)V92.CB, (T0312)V110.CB) [> 3.9493 = 6.5822 < 8.5568] w=0.0973 to align # Constraint # added constraint: constraint((T0312)H89.CB, (T0312)L105.CB) [> 4.1766 = 6.9610 < 9.0493] w=0.0966 to align # Constraint # added constraint: constraint((T0312)Y18.CB, (T0312)E109.CB) [> 3.6946 = 6.1577 < 8.0050] w=0.0958 to align # Constraint # added constraint: constraint((T0312)D17.CB, (T0312)V110.CB) [> 3.0814 = 5.1357 < 6.6764] w=0.0958 to align # Constraint # added constraint: constraint((T0312)D17.CB, (T0312)E109.CB) [> 4.2616 = 7.1026 < 9.2334] w=0.0958 to align # Constraint # added constraint: constraint((T0312)L16.CB, (T0312)V110.CB) [> 4.3055 = 7.1759 < 9.3286] w=0.0958 to align # Constraint # added constraint: constraint((T0312)L16.CB, (T0312)R47.CB) [> 4.5346 = 7.5576 < 9.8249] w=0.0958 to align # Constraint # added constraint: constraint((T0312)R15.CB, (T0312)C113.CB) [> 4.5424 = 7.5707 < 9.8419] w=0.0958 to align # Constraint # added constraint: constraint((T0312)R15.CB, (T0312)V110.CB) [> 4.0601 = 6.7669 < 8.7969] w=0.0958 to align # Constraint # added constraint: constraint((T0312)L14.CB, (T0312)V115.CB) [> 3.4721 = 5.7868 < 7.5228] w=0.0958 to align # Constraint # added constraint: constraint((T0312)L14.CB, (T0312)V110.CB) [> 3.2384 = 5.3974 < 7.0166] w=0.0958 to align # Constraint # added constraint: constraint((T0312)G11.CA, (T0312)V117.CB) [> 3.9951 = 6.6585 < 8.6561] w=0.0958 to align # Constraint # added constraint: constraint((T0312)K10.CB, (T0312)L118.CB) [> 4.7278 = 7.8797 < 10.2436] w=0.0958 to align # Constraint # added constraint: constraint((T0312)K10.CB, (T0312)V117.CB) [> 2.7897 = 4.6495 < 6.0444] w=0.0958 to align # Constraint # added constraint: constraint((T0312)G9.CA, (T0312)P119.CB) [> 4.2674 = 7.1124 < 9.2461] w=0.0958 to align # Constraint # added constraint: constraint((T0312)G9.CA, (T0312)L118.CB) [> 3.3276 = 5.5461 < 7.2099] w=0.0958 to align # Constraint # added constraint: constraint((T0312)G9.CA, (T0312)V117.CB) [> 3.8153 = 6.3588 < 8.2664] w=0.0958 to align # Constraint # added constraint: constraint((T0312)D55.CB, (T0312)P69.CB) [> 3.8828 = 6.4713 < 8.4127] w=0.0958 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)V92.CB) [> 3.4267 = 5.7112 < 7.4245] w=0.0958 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)P125.CB) [> 3.1923 = 5.3205 < 6.9166] w=0.0958 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)G52.CA) [> 3.5244 = 5.8740 < 7.6362] w=0.0939 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)G52.CA) [> 3.7423 = 6.2372 < 8.1083] w=0.0939 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)F106.CB) [> 3.6380 = 6.0634 < 7.8824] w=0.0926 to align # Constraint # added constraint: constraint((T0312)H89.CB, (T0312)F111.CB) [> 3.6047 = 6.0078 < 7.8101] w=0.0926 to align # Constraint # added constraint: constraint((T0312)H89.CB, (T0312)F106.CB) [> 3.6734 = 6.1223 < 7.9590] w=0.0926 to align # Constraint # added constraint: constraint((T0312)C88.CB, (T0312)V110.CB) [> 3.5929 = 5.9881 < 7.7846] w=0.0926 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)V115.CB) [> 4.3301 = 7.2168 < 9.3819] w=0.0926 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)I72.CB) [> 4.5619 = 7.6031 < 9.8840] w=0.0900 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)S74.CB) [> 4.1582 = 6.9303 < 9.0094] w=0.0887 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)Y101.CB) [> 4.3041 = 7.1734 < 9.3254] w=0.0878 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)E114.CB) [> 3.8543 = 6.4239 < 8.3510] w=0.0876 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)C113.CB) [> 4.4655 = 7.4425 < 9.6752] w=0.0876 to align # Constraint # added constraint: constraint((T0312)H89.CB, (T0312)V115.CB) [> 4.1579 = 6.9299 < 9.0089] w=0.0876 to align # Constraint # added constraint: constraint((T0312)G44.CA, (T0312)G77.CA) [> 3.3839 = 5.6398 < 7.3317] w=0.0847 to align # Constraint # added constraint: constraint((T0312)I72.CB, (T0312)L93.CB) [> 3.8051 = 6.3418 < 8.2444] w=0.0840 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)L73.CB) [> 2.8112 = 4.6854 < 6.0910] w=0.0835 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)L73.CB) [> 3.2584 = 5.4306 < 7.0598] w=0.0835 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)G77.CA) [> 2.7185 = 4.5308 < 5.8901] w=0.0835 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)L73.CB) [> 3.9194 = 6.5324 < 8.4921] w=0.0835 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)S74.CB) [> 3.8083 = 6.3472 < 8.2514] w=0.0835 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)G77.CA) [> 3.8829 = 6.4715 < 8.4130] w=0.0835 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)S74.CB) [> 2.8705 = 4.7842 < 6.2195] w=0.0835 to align # Constraint # added constraint: constraint((T0312)P86.CB, (T0312)S107.CB) [> 3.6054 = 6.0090 < 7.8116] w=0.0828 to align # Constraint # added constraint: constraint((T0312)F87.CB, (T0312)S107.CB) [> 3.4537 = 5.7562 < 7.4830] w=0.0828 to align # Constraint # added constraint: constraint((T0312)C88.CB, (T0312)G103.CA) [> 4.3685 = 7.2809 < 9.4652] w=0.0828 to align # Constraint # added constraint: constraint((T0312)C88.CB, (T0312)H104.CB) [> 4.0961 = 6.8269 < 8.8750] w=0.0828 to align # Constraint # added constraint: constraint((T0312)H89.CB, (T0312)G103.CA) [> 3.8052 = 6.3420 < 8.2446] w=0.0828 to align # Constraint # added constraint: constraint((T0312)V100.CB, (T0312)F116.CB) [> 4.0631 = 6.7718 < 8.8033] w=0.0828 to align # Constraint # added constraint: constraint((T0312)Y61.CB, (T0312)P125.CB) [> 4.3305 = 7.2175 < 9.3828] w=0.0828 to align # Constraint # added constraint: constraint((T0312)E114.CB, (T0312)F136.CB) [> 4.5536 = 7.5894 < 9.8662] w=0.0828 to align # Constraint # added constraint: constraint((T0312)C113.CB, (T0312)L135.CB) [> 3.5609 = 5.9349 < 7.7154] w=0.0828 to align # Constraint # added constraint: constraint((T0312)A112.CB, (T0312)L137.CB) [> 4.1092 = 6.8486 < 8.9032] w=0.0828 to align # Constraint # added constraint: constraint((T0312)A112.CB, (T0312)F136.CB) [> 2.7415 = 4.5691 < 5.9398] w=0.0828 to align # Constraint # added constraint: constraint((T0312)V110.CB, (T0312)L137.CB) [> 3.3190 = 5.5316 < 7.1911] w=0.0828 to align # Constraint # added constraint: constraint((T0312)F111.CB, (T0312)W138.CB) [> 4.3073 = 7.1788 < 9.3324] w=0.0828 to align # Constraint # added constraint: constraint((T0312)A112.CB, (T0312)L135.CB) [> 4.1790 = 6.9650 < 9.0545] w=0.0828 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)G77.CA) [> 2.7915 = 4.6526 < 6.0483] w=0.0819 to align # Constraint # added constraint: constraint((T0312)V115.CB, (T0312)A124.CB) [> 3.6854 = 6.1424 < 7.9851] w=0.0802 to align # Constraint # added constraint: constraint((T0312)C88.CB, (T0312)V115.CB) [> 4.6410 = 7.7350 < 10.0555] w=0.0802 to align # Constraint # added constraint: constraint((T0312)S48.CB, (T0312)V117.CB) [> 3.8879 = 6.4798 < 8.4237] w=0.0790 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)F116.CB) [> 3.9861 = 6.6435 < 8.6365] w=0.0790 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)V115.CB) [> 4.0486 = 6.7477 < 8.7720] w=0.0790 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)E114.CB) [> 4.1716 = 6.9526 < 9.0384] w=0.0790 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)C113.CB) [> 3.4783 = 5.7972 < 7.5363] w=0.0790 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)E114.CB) [> 3.6416 = 6.0693 < 7.8900] w=0.0790 to align # Constraint # added constraint: constraint((T0312)A45.CB, (T0312)C88.CB) [> 3.2417 = 5.4028 < 7.0237] w=0.0783 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)C88.CB) [> 3.7252 = 6.2087 < 8.0713] w=0.0783 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)H89.CB) [> 3.1868 = 5.3113 < 6.9047] w=0.0783 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)V92.CB) [> 3.5287 = 5.8811 < 7.6455] w=0.0783 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)H104.CB) [> 3.8335 = 6.3891 < 8.3059] w=0.0783 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)H89.CB) [> 4.4055 = 7.3425 < 9.5452] w=0.0758 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)G77.CA) [> 3.4506 = 5.7510 < 7.4763] w=0.0753 to align # Constraint # added constraint: constraint((T0312)D21.CB, (T0312)G134.CA) [> 2.8970 = 4.8284 < 6.2769] w=0.0739 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)V50.CB) [> 3.8306 = 6.3843 < 8.2995] w=0.0739 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)L135.CB) [> 3.2373 = 5.3955 < 7.0142] w=0.0739 to align # Constraint # added constraint: constraint((T0312)K20.CB, (T0312)F136.CB) [> 4.4219 = 7.3699 < 9.5808] w=0.0739 to align # Constraint # added constraint: constraint((T0312)G19.CA, (T0312)L135.CB) [> 4.1208 = 6.8679 < 8.9283] w=0.0739 to align # Constraint # added constraint: constraint((T0312)Y18.CB, (T0312)F136.CB) [> 3.1333 = 5.2222 < 6.7888] w=0.0739 to align # Constraint # added constraint: constraint((T0312)D17.CB, (T0312)L135.CB) [> 4.6858 = 7.8097 < 10.1526] w=0.0739 to align # Constraint # added constraint: constraint((T0312)L16.CB, (T0312)W138.CB) [> 4.3430 = 7.2383 < 9.4097] w=0.0739 to align # Constraint # added constraint: constraint((T0312)L16.CB, (T0312)F136.CB) [> 3.6035 = 6.0059 < 7.8076] w=0.0739 to align # Constraint # added constraint: constraint((T0312)E7.CB, (T0312)C113.CB) [> 4.5799 = 7.6331 < 9.9230] w=0.0739 to align # Constraint # added constraint: constraint((T0312)V117.CB, (T0312)W138.CB) [> 4.4576 = 7.4293 < 9.6580] w=0.0739 to align # Constraint # added constraint: constraint((T0312)Q56.CB, (T0312)V115.CB) [> 4.5928 = 7.6547 < 9.9511] w=0.0739 to align # Constraint # added constraint: constraint((T0312)Q56.CB, (T0312)C113.CB) [> 3.3581 = 5.5968 < 7.2758] w=0.0739 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)C113.CB) [> 4.1178 = 6.8631 < 8.9220] w=0.0739 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)Q56.CB) [> 3.5093 = 5.8488 < 7.6034] w=0.0739 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)W138.CB) [> 3.9617 = 6.6028 < 8.5837] w=0.0739 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)V50.CB) [> 4.4285 = 7.3808 < 9.5951] w=0.0739 to align # Constraint # added constraint: constraint((T0312)F12.CB, (T0312)H39.CB) [> 3.6000 = 6.0000 < 7.8000] w=0.0705 to align # Constraint # added constraint: constraint((T0312)R15.CB, (T0312)S41.CB) [> 4.3628 = 7.2713 < 9.4527] w=0.0705 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)V46.CB) [> 3.8749 = 6.4581 < 8.3956] w=0.0705 to align # Constraint # added constraint: constraint((T0312)G44.CA, (T0312)H91.CB) [> 4.4717 = 7.4528 < 9.6886] w=0.0705 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)G77.CA) [> 3.8579 = 6.4297 < 8.3587] w=0.0705 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)I51.CB) [> 4.4360 = 7.3933 < 9.6112] w=0.0696 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)G52.CA) [> 4.0437 = 6.7396 < 8.7614] w=0.0696 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)G52.CA) [> 3.2276 = 5.3793 < 6.9930] w=0.0696 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)L73.CB) [> 3.9752 = 6.6253 < 8.6129] w=0.0696 to align # Constraint # added constraint: constraint((T0312)D55.CB, (T0312)L75.CB) [> 2.7736 = 4.6227 < 6.0096] w=0.0687 to align # Constraint # added constraint: constraint((T0312)H89.CB, (T0312)A112.CB) [> 3.5539 = 5.9231 < 7.7001] w=0.0683 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)G77.CA) [> 3.5019 = 5.8365 < 7.5875] w=0.0671 to align # Constraint # added constraint: constraint((T0312)I72.CB, (T0312)V115.CB) [> 4.3690 = 7.2816 < 9.4661] w=0.0665 to align # Constraint # added constraint: constraint((T0312)I72.CB, (T0312)F116.CB) [> 4.4233 = 7.3721 < 9.5838] w=0.0665 to align # Constraint # added constraint: constraint((T0312)I72.CB, (T0312)V117.CB) [> 3.4099 = 5.6832 < 7.3882] w=0.0665 to align # Constraint # added constraint: constraint((T0312)I72.CB, (T0312)L137.CB) [> 3.2034 = 5.3391 < 6.9408] w=0.0665 to align # Constraint # added constraint: constraint((T0312)L73.CB, (T0312)V115.CB) [> 4.6891 = 7.8152 < 10.1597] w=0.0665 to align # Constraint # added constraint: constraint((T0312)L73.CB, (T0312)F116.CB) [> 3.2311 = 5.3851 < 7.0006] w=0.0665 to align # Constraint # added constraint: constraint((T0312)L73.CB, (T0312)V117.CB) [> 4.6175 = 7.6959 < 10.0047] w=0.0665 to align # Constraint # added constraint: constraint((T0312)L73.CB, (T0312)L137.CB) [> 3.2471 = 5.4119 < 7.0354] w=0.0665 to align # Constraint # added constraint: constraint((T0312)S74.CB, (T0312)C113.CB) [> 3.9483 = 6.5805 < 8.5546] w=0.0665 to align # Constraint # added constraint: constraint((T0312)C88.CB, (T0312)F116.CB) [> 3.6324 = 6.0540 < 7.8702] w=0.0665 to align # Constraint # added constraint: constraint((T0312)H89.CB, (T0312)E114.CB) [> 3.4987 = 5.8311 < 7.5804] w=0.0665 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)F106.CB) [> 3.5951 = 5.9918 < 7.7894] w=0.0665 to align # Constraint # added constraint: constraint((T0312)V92.CB, (T0312)F106.CB) [> 3.8622 = 6.4370 < 8.3681] w=0.0665 to align # Constraint # added constraint: constraint((T0312)P125.CB, (T0312)L139.CB) [> 3.7887 = 6.3145 < 8.2088] w=0.0665 to align # Constraint # added constraint: constraint((T0312)S74.CB, (T0312)E114.CB) [> 4.7233 = 7.8722 < 10.2339] w=0.0665 to align # Constraint # added constraint: constraint((T0312)S74.CB, (T0312)V115.CB) [> 3.3815 = 5.6358 < 7.3265] w=0.0665 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)E114.CB) [> 2.8969 = 4.8282 < 6.2767] w=0.0665 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)F116.CB) [> 3.8128 = 6.3546 < 8.2610] w=0.0665 to align # Constraint # added constraint: constraint((T0312)V92.CB, (T0312)F111.CB) [> 3.0890 = 5.1484 < 6.6929] w=0.0633 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)C113.CB) [> 3.8076 = 6.3460 < 8.2498] w=0.0633 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)V92.CB) [> 4.5368 = 7.5613 < 9.8297] w=0.0616 to align # Constraint # added constraint: constraint((T0312)D55.CB, (T0312)A112.CB) [> 4.1786 = 6.9643 < 9.0536] w=0.0591 to align # Constraint # added constraint: constraint((T0312)Y53.CB, (T0312)L135.CB) [> 2.7999 = 4.6665 < 6.0665] w=0.0591 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)L135.CB) [> 3.5931 = 5.9884 < 7.7850] w=0.0591 to align # Constraint # added constraint: constraint((T0312)R47.CB, (T0312)G122.CA) [> 4.2851 = 7.1418 < 9.2844] w=0.0591 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)S107.CB) [> 4.6765 = 7.7942 < 10.1325] w=0.0591 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)I43.CB) [> 4.6958 = 7.8263 < 10.1742] w=0.0591 to align # Constraint # added constraint: constraint((T0312)Y18.CB, (T0312)S121.CB) [> 4.4350 = 7.3916 < 9.6091] w=0.0591 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)V117.CB) [> 4.5452 = 7.5754 < 9.8480] w=0.0591 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)V117.CB) [> 3.2751 = 5.4585 < 7.0961] w=0.0591 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)F116.CB) [> 2.7348 = 4.5580 < 5.9254] w=0.0591 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)V100.CB) [> 3.2891 = 5.4818 < 7.1263] w=0.0591 to align # Constraint # added constraint: constraint((T0312)H89.CB, (T0312)L120.CB) [> 4.6862 = 7.8104 < 10.1535] w=0.0591 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)G77.CA) [> 3.3142 = 5.5237 < 7.1808] w=0.0578 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)C88.CB) [> 4.4491 = 7.4151 < 9.6397] w=0.0559 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)C88.CB) [> 4.3502 = 7.2502 < 9.4253] w=0.0559 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)A112.CB) [> 4.5735 = 7.6226 < 9.9093] w=0.0552 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)I51.CB) [> 3.4768 = 5.7947 < 7.5331] w=0.0522 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)G52.CA) [> 4.0006 = 6.6677 < 8.6681] w=0.0522 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)G52.CA) [> 3.3108 = 5.5180 < 7.1734] w=0.0522 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)C113.CB) [> 4.5688 = 7.6147 < 9.8992] w=0.0522 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)I90.CB) [> 3.9985 = 6.6642 < 8.6634] w=0.0522 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)H104.CB) [> 2.9993 = 4.9988 < 6.4985] w=0.0522 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)I51.CB) [> 4.2785 = 7.1309 < 9.2702] w=0.0522 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)V50.CB) [> 4.5345 = 7.5575 < 9.8248] w=0.0522 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)I51.CB) [> 3.8214 = 6.3691 < 8.2798] w=0.0522 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)G52.CA) [> 4.5756 = 7.6259 < 9.9137] w=0.0522 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)Y61.CB) [> 3.3714 = 5.6189 < 7.3046] w=0.0522 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)V117.CB) [> 4.2670 = 7.1117 < 9.2452] w=0.0496 to align # Constraint # added constraint: constraint((T0312)L93.CB, (T0312)A112.CB) [> 3.1809 = 5.3014 < 6.8918] w=0.0487 to align # Constraint # added constraint: constraint((T0312)V92.CB, (T0312)V117.CB) [> 4.2243 = 7.0404 < 9.1525] w=0.0475 to align # Constraint # added constraint: constraint((T0312)L93.CB, (T0312)F111.CB) [> 3.4730 = 5.7883 < 7.5248] w=0.0446 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)K82.CB) [> 3.8983 = 6.4972 < 8.4463] w=0.0429 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)V110.CB) [> 2.8061 = 4.6769 < 6.0799] w=0.0422 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)A112.CB) [> 4.2098 = 7.0163 < 9.1212] w=0.0422 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)F111.CB) [> 3.2809 = 5.4682 < 7.1086] w=0.0422 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)V110.CB) [> 4.1657 = 6.9428 < 9.0257] w=0.0422 to align # Constraint # added constraint: constraint((T0312)H91.CB, (T0312)F111.CB) [> 4.3192 = 7.1986 < 9.3582] w=0.0422 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)L75.CB) [> 4.4315 = 7.3858 < 9.6015] w=0.0417 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)S76.CB) [> 4.4284 = 7.3807 < 9.5949] w=0.0417 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)V92.CB) [> 2.9664 = 4.9441 < 6.4273] w=0.0417 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)H91.CB) [> 4.4619 = 7.4365 < 9.6675] w=0.0417 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)H89.CB) [> 3.3188 = 5.5313 < 7.1907] w=0.0417 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)L75.CB) [> 4.4440 = 7.4067 < 9.6286] w=0.0417 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)H89.CB) [> 2.8033 = 4.6721 < 6.0738] w=0.0417 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)C88.CB) [> 4.5049 = 7.5082 < 9.7606] w=0.0417 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)L75.CB) [> 3.0257 = 5.0428 < 6.5556] w=0.0417 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)S76.CB) [> 3.0154 = 5.0257 < 6.5334] w=0.0417 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)H89.CB) [> 4.2332 = 7.0553 < 9.1719] w=0.0417 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)H89.CB) [> 2.9735 = 4.9558 < 6.4425] w=0.0417 to align # Constraint # added constraint: constraint((T0312)L93.CB, (T0312)E114.CB) [> 3.3798 = 5.6330 < 7.3229] w=0.0410 to align # Constraint # added constraint: constraint((T0312)L93.CB, (T0312)C113.CB) [> 4.5268 = 7.5447 < 9.8081] w=0.0410 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)S76.CB) [> 4.4198 = 7.3663 < 9.5762] w=0.0377 to align # Constraint # added constraint: constraint((T0312)S76.CB, (T0312)C88.CB) [> 4.1192 = 6.8654 < 8.9250] w=0.0340 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)I90.CB) [> 4.3522 = 7.2537 < 9.4298] w=0.0340 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)H89.CB) [> 2.6621 = 4.4369 < 5.7680] w=0.0340 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)C88.CB) [> 4.1643 = 6.9406 < 9.0227] w=0.0340 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)H89.CB) [> 4.1628 = 6.9380 < 9.0194] w=0.0295 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)H39.CB) [> 4.5265 = 7.5443 < 9.8075] w=0.0287 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)H89.CB) [> 3.2357 = 5.3928 < 7.0107] w=0.0287 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)H89.CB) [> 4.7453 = 7.9088 < 10.2814] w=0.0287 to align # Constraint # added constraint: constraint((T0312)I26.CB, (T0312)I72.CB) [> 3.0875 = 5.1459 < 6.6896] w=0.0283 to align # Constraint # added constraint: constraint((T0312)S48.CB, (T0312)L73.CB) [> 4.2286 = 7.0477 < 9.1620] w=0.0283 to align # Constraint # added constraint: constraint((T0312)L93.CB, (T0312)V110.CB) [> 3.7625 = 6.2709 < 8.1521] w=0.0276 to align # Constraint # added constraint: constraint((T0312)F12.CB, (T0312)F116.CB) [> 4.3131 = 7.1885 < 9.3450] w=0.0261 to align # Constraint # added constraint: constraint((T0312)F12.CB, (T0312)F106.CB) [> 3.5770 = 5.9616 < 7.7501] w=0.0261 to align # Constraint # added constraint: constraint((T0312)F12.CB, (T0312)Y54.CB) [> 3.3686 = 5.6143 < 7.2986] w=0.0261 to align # Constraint # added constraint: constraint((T0312)G11.CA, (T0312)F106.CB) [> 4.3427 = 7.2378 < 9.4092] w=0.0261 to align # Constraint # added constraint: constraint((T0312)F6.CB, (T0312)A112.CB) [> 3.3395 = 5.5659 < 7.2356] w=0.0261 to align # Constraint # added constraint: constraint((T0312)F6.CB, (T0312)F111.CB) [> 2.3695 = 3.9492 < 5.1339] w=0.0261 to align # Constraint # added constraint: constraint((T0312)F6.CB, (T0312)H89.CB) [> 4.7670 = 7.9450 < 10.3285] w=0.0261 to align # Constraint # added constraint: constraint((T0312)F6.CB, (T0312)C88.CB) [> 3.2296 = 5.3827 < 6.9975] w=0.0261 to align # Constraint # added constraint: constraint((T0312)E5.CB, (T0312)E126.CB) [> 2.9632 = 4.9386 < 6.4202] w=0.0261 to align # Constraint # added constraint: constraint((T0312)F4.CB, (T0312)I51.CB) [> 3.1790 = 5.2984 < 6.8879] w=0.0261 to align # Constraint # added constraint: constraint((T0312)K10.CB, (T0312)S107.CB) [> 3.8752 = 6.4586 < 8.3962] w=0.0261 to align # Constraint # added constraint: constraint((T0312)K10.CB, (T0312)Y54.CB) [> 3.2442 = 5.4070 < 7.0291] w=0.0261 to align # Constraint # added constraint: constraint((T0312)G9.CA, (T0312)F111.CB) [> 3.0521 = 5.0868 < 6.6129] w=0.0261 to align # Constraint # added constraint: constraint((T0312)G9.CA, (T0312)Y54.CB) [> 3.4083 = 5.6805 < 7.3846] w=0.0261 to align # Constraint # added constraint: constraint((T0312)V8.CB, (T0312)F116.CB) [> 3.9233 = 6.5388 < 8.5004] w=0.0261 to align # Constraint # added constraint: constraint((T0312)V8.CB, (T0312)F111.CB) [> 3.2234 = 5.3723 < 6.9840] w=0.0261 to align # Constraint # added constraint: constraint((T0312)V8.CB, (T0312)S107.CB) [> 3.6521 = 6.0869 < 7.9130] w=0.0261 to align # Constraint # added constraint: constraint((T0312)G77.CA, (T0312)V117.CB) [> 4.4054 = 7.3423 < 9.5449] w=0.0261 to align # Constraint # added constraint: constraint((T0312)G77.CA, (T0312)F116.CB) [> 3.4446 = 5.7410 < 7.4632] w=0.0261 to align # Constraint # added constraint: constraint((T0312)G77.CA, (T0312)F111.CB) [> 3.7840 = 6.3066 < 8.1986] w=0.0261 to align # Constraint # added constraint: constraint((T0312)S76.CB, (T0312)V117.CB) [> 2.5154 = 4.1923 < 5.4500] w=0.0261 to align # Constraint # added constraint: constraint((T0312)S76.CB, (T0312)F116.CB) [> 3.8564 = 6.4274 < 8.3556] w=0.0261 to align # Constraint # added constraint: constraint((T0312)S76.CB, (T0312)F111.CB) [> 4.2113 = 7.0189 < 9.1245] w=0.0261 to align # Constraint # added constraint: constraint((T0312)L75.CB, (T0312)V110.CB) [> 4.4426 = 7.4043 < 9.6256] w=0.0261 to align # Constraint # added constraint: constraint((T0312)S74.CB, (T0312)V117.CB) [> 4.0942 = 6.8237 < 8.8708] w=0.0261 to align # Constraint # added constraint: constraint((T0312)I72.CB, (T0312)V110.CB) [> 2.7997 = 4.6662 < 6.0661] w=0.0261 to align # Constraint # added constraint: constraint((T0312)H89.CB, (T0312)C113.CB) [> 3.4187 = 5.6978 < 7.4072] w=0.0261 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)V110.CB) [> 3.3881 = 5.6468 < 7.3409] w=0.0261 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)A112.CB) [> 4.4473 = 7.4121 < 9.6357] w=0.0261 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)V110.CB) [> 4.0823 = 6.8039 < 8.8450] w=0.0261 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)G52.CA) [> 3.4169 = 5.6948 < 7.4033] w=0.0235 to align # Constraint # added constraint: constraint((T0312)K10.CB, (T0312)H39.CB) [> 3.7946 = 6.3243 < 8.2216] w=0.0235 to align # Constraint # added constraint: constraint((T0312)K10.CB, (T0312)A38.CB) [> 2.4879 = 4.1466 < 5.3905] w=0.0235 to align # Constraint # added constraint: constraint((T0312)V8.CB, (T0312)C113.CB) [> 2.6384 = 4.3973 < 5.7165] w=0.0235 to align # Constraint # added constraint: constraint((T0312)H104.CB, (T0312)V117.CB) [> 2.7914 = 4.6524 < 6.0481] w=0.0235 to align # Constraint # added constraint: constraint((T0312)L73.CB, (T0312)A112.CB) [> 3.6477 = 6.0795 < 7.9034] w=0.0235 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)L75.CB) [> 3.1635 = 5.2724 < 6.8541] w=0.0235 to align # Constraint # added constraint: constraint((T0312)V46.CB, (T0312)S76.CB) [> 4.3774 = 7.2958 < 9.4845] w=0.0235 to align # Constraint # added constraint: constraint((T0312)I90.CB, (T0312)E114.CB) [> 4.3909 = 7.3181 < 9.5136] w=0.0211 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)V117.CB) [> 2.7911 = 4.6518 < 6.0474] w=0.0199 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)L93.CB) [> 2.8268 = 4.7114 < 6.1248] w=0.0199 to align # Constraint # added constraint: constraint((T0312)H36.CB, (T0312)L73.CB) [> 4.4883 = 7.4804 < 9.7246] w=0.0199 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)L93.CB) [> 2.6354 = 4.3924 < 5.7101] w=0.0199 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)V115.CB) [> 4.5752 = 7.6254 < 9.9130] w=0.0199 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)F116.CB) [> 4.5737 = 7.6229 < 9.9097] w=0.0199 to align # Constraint # added constraint: constraint((T0312)A37.CB, (T0312)V117.CB) [> 2.6217 = 4.3695 < 5.6803] w=0.0199 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)V92.CB) [> 3.1957 = 5.3261 < 6.9239] w=0.0199 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)E114.CB) [> 4.3003 = 7.1671 < 9.3172] w=0.0199 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)V115.CB) [> 4.2172 = 7.0287 < 9.1373] w=0.0199 to align # Constraint # added constraint: constraint((T0312)A38.CB, (T0312)F116.CB) [> 3.2096 = 5.3493 < 6.9541] w=0.0199 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)E114.CB) [> 4.2241 = 7.0402 < 9.1522] w=0.0199 to align # Constraint # added constraint: constraint((T0312)L93.CB, (T0312)V115.CB) [> 4.0928 = 6.8213 < 8.8676] w=0.0199 to align # Constraint # added constraint: constraint((T0312)L93.CB, (T0312)F116.CB) [> 2.4332 = 4.0553 < 5.2719] w=0.0199 to align # Constraint # added constraint: constraint((T0312)H39.CB, (T0312)V115.CB) [> 2.9086 = 4.8476 < 6.3019] w=0.0199 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)A112.CB) [> 3.7175 = 6.1959 < 8.0546] w=0.0199 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)C113.CB) [> 4.3994 = 7.3324 < 9.5321] w=0.0199 to align # Constraint # added constraint: constraint((T0312)I40.CB, (T0312)E114.CB) [> 3.3813 = 5.6354 < 7.3261] w=0.0199 to align # Constraint # added constraint: constraint((T0312)S41.CB, (T0312)H91.CB) [> 3.8798 = 6.4663 < 8.4061] w=0.0199 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)A112.CB) [> 3.6667 = 6.1112 < 7.9446] w=0.0199 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)A112.CB) [> 3.7175 = 6.1959 < 8.0546] w=0.0199 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)E114.CB) [> 4.4231 = 7.3718 < 9.5834] w=0.0199 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)G77.CA) [> 3.1481 = 5.2468 < 6.8208] w=0.0199 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)E114.CB) [> 4.3003 = 7.1671 < 9.3172] w=0.0199 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)S74.CB) [> 3.2409 = 5.4016 < 7.0220] w=0.0192 to align # Constraint # added constraint: constraint((T0312)I72.CB, (T0312)C88.CB) [> 3.0575 = 5.0958 < 6.6245] w=0.0192 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)H89.CB) [> 4.0578 = 6.7629 < 8.7918] w=0.0141 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)H91.CB) [> 4.6801 = 7.8002 < 10.1403] w=0.0141 to align # Constraint # added constraint: constraint((T0312)A42.CB, (T0312)L93.CB) [> 4.1186 = 6.8644 < 8.9237] w=0.0141 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)H89.CB) [> 4.1244 = 6.8741 < 8.9363] w=0.0141 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)I90.CB) [> 4.1838 = 6.9731 < 9.0650] w=0.0141 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)H91.CB) [> 3.9622 = 6.6036 < 8.5847] w=0.0141 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)V92.CB) [> 3.7395 = 6.2325 < 8.1022] w=0.0141 to align # Constraint # added constraint: constraint((T0312)I43.CB, (T0312)L93.CB) [> 2.2492 = 3.7487 < 4.8733] w=0.0141 to align # Constraint # added constraint: constraint((T0312)L22.CB, (T0312)I90.CB) [> 4.2302 = 7.0503 < 9.1654] w=0.0141 to align # Constraint # added constraint: constraint((T0312)G52.CA, (T0312)L93.CB) [> 4.4333 = 7.3889 < 9.6056] w=0.0141 to align # Constraint # added constraint: constraint((T0312)I51.CB, (T0312)L93.CB) [> 1.9242 = 3.2069 < 4.1690] w=0.0141 to align # Constraint # added constraint: constraint((T0312)V50.CB, (T0312)L93.CB) [> 4.7771 = 7.9618 < 10.3503] w=0.0141 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)L93.CB) [> 3.7493 = 6.2489 < 8.1236] w=0.0141 to align # Constraint # added constraint: constraint((T0312)A49.CB, (T0312)G77.CA) [> 4.2261 = 7.0435 < 9.1565] w=0.0141 to align # Constraint # added constraint: constraint((T0312)H89.CB, (T0312)H104.CB) [> 3.2034 = 5.3391 < 6.9408] w=0.0130 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0312/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0312/decoys/ # ReadConformPDB reading from PDB file scrambled-loop.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 10 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 Skipped atom 207, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 28 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0312)L66.O and (T0312)M67.N only 0.000 apart, marking (T0312)M67.N as missing # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0312)E131.O and (T0312)Q132.N only 0.000 apart, marking (T0312)Q132.N as missing # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 138 in servers/nFOLD_TS2.pdb.gz # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0312 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 0.9541 model score 1.7908 model score 1.7992 model score 1.7637 model score 1.7741 model score 1.7526 model score 1.2545 model score 1.4211 model score 1.6820 model score 1.6671 model score 1.9234 model score 1.3391 model score 2.4066 model score 1.9169 model score 2.2849 model score 2.3772 model score 1.5601 model score 1.9004 model score 1.3861 model score 1.1338 model score 1.7967 model score 1.3861 model score 1.1338 model score 1.0644 model score 1.3464 model score 1.4357 model score 2.2865 model score 1.6716 model score 1.5536 model score 1.5916 model score 1.6667 model score 1.5652 model score 1.7036 model score 0.9308 model score 0.6926 model score 0.8859 model score 1.6835 model score 0.9815 model score 1.9148 model score 1.7897 model score 1.6061 model score 1.4720 model score 1.2743 model score 1.2715 model score 1.2729 model score 1.2761 model score 1.2747 model score 0.7011 model score 0.8859 model score 1.2379 model score 1.5880 model score 1.1696 model score 0.8859 model score 2.0982 model score 0.8859 model score 1.6245 model score 0.6926 model score 1.3320 model score 2.1828 model score 1.5601 model score 1.7356 model score 1.7866 model score 1.2806 model score 1.2704 model score 1.2805 model score 1.2808 model score 1.2831 model score 1.2704 model score 1.2808 model score 1.2817 model score 1.2808 model score 1.2805 model score 2.1573 model score 2.2545 model score 2.1702 model score 2.0948 model score 2.1658 model score 1.8198 model score 2.0795 model score 1.1554 model score 1.9703 model score 2.2178 model score 1.2791 model score 1.2797 model score 1.2771 model score 1.2818 model score 1.2777 model score 1.6245 model score 1.7402 model score 1.9725 model score 1.7847 model score 1.4738 model score 1.7882 model score 1.6227 model score 1.8454 model score 1.6655 model score 1.0720 model score 1.6929 model score 1.5198 model score 1.6340 model score 1.6031 model score 1.2505 model score 1.2771 model score 1.7806 model score 1.9957 model score 1.5999 model score 1.7826 model score 1.6144 model score 1.4184 model score 1.5008 model score 0.9081 model score 1.4831 model score 1.6474 model score 1.2133 model score 1.1651 model score 1.2658 model score 1.1482 model score 1.1763 model score 1.7806 model score 2.2450 model score 1.8338 model score 2.1121 model score 1.7814 model score 2.0840 model score 1.3582 model score 1.3564 model score 1.3406 model score 1.3492 model score 1.3457 model score 1.3534 model score 1.3564 model score 1.2856 model score 1.3413 model score 1.6054 model score 0.9226 model score 0.9155 model score 0.5810 model score 1.2066 model score 0.9513 model score 0.8160 model score 0.5810 model score 1.0508 model score 0.9513 model score 0.7747 model score 0.9226 model score 1.7361 model score 1.8301 model score 1.6758 model score 1.8335 model score 2.1437 model score 1.3765 model score 1.5557 model score 1.7490 model score 1.8131 model score 1.4042 model score 1.3421 model score 1.5731 model score 1.7468 model score 1.8023 model score 1.3869 model score 0.5810 model score 1.3408 model score 0.6173 model score 1.3007 model score 1.0508 model score 1.2812 model score 1.2841 model score 1.2815 model score 1.2836 model score 1.2840 model score 1.2736 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.5181 model score 0.5536 model score 1.1710 model score 1.1722 model score 1.4084 model score 1.4749 model score 1.8671 model score 2.2411 model score 1.5598 model score 1.5324 model score 1.7075 model score 1.6451 model score 0.7058 model score 1.7845 model score 1.5723 model score 1.7446 model score 1.5589 model score 1.8648 model score 1.9004 model score 1.4147 model score 1.2729 model score 0.9855 model score 1.2712 model score 0.9430 model score 1.1383 model score 1.0445 model score 1.0250 model score 0.6049 model score 1.5906 model score 1.5339 model score 1.2854 model score 1.2807 model score 1.2807 model score 1.2771 model score 1.2836 model score 1.6614 model score 1.6193 model score 1.6713 model score 1.9430 model score 1.4036 model score 1.9850 model score 2.1356 model score 1.9452 model score 2.2303 model score 2.1375 model score 1.6001 model score 1.5841 model score 1.8586 model score 1.8844 model score 1.6782 model score 0.8609 model score 1.2587 model score 2.1186 model score 1.0376 model score 1.7666 model score 1.2521 model score 1.7972 model score 1.4155 model score 1.7975 model score 1.7972 model score 1.7972 model score 1.3286 model score 1.5207 USE_META, weight: 0.7922 cost: 0.9541 min: 0.5181 max: 2.4066 USE_META, weight: 0.3934 cost: 1.7908 min: 0.5181 max: 2.4066 USE_META, weight: 0.3895 cost: 1.7992 min: 0.5181 max: 2.4066 USE_META, weight: 0.4064 cost: 1.7637 min: 0.5181 max: 2.4066 USE_META, weight: 0.4014 cost: 1.7741 min: 0.5181 max: 2.4066 USE_META, weight: 0.4117 cost: 1.7526 min: 0.5181 max: 2.4066 USE_META, weight: 0.6490 cost: 1.2545 min: 0.5181 max: 2.4066 USE_META, weight: 0.5697 cost: 1.4211 min: 0.5181 max: 2.4066 USE_META, weight: 0.4453 cost: 1.6820 min: 0.5181 max: 2.4066 USE_META, weight: 0.4524 cost: 1.6671 min: 0.5181 max: 2.4066 USE_META, weight: 0.3303 cost: 1.9234 min: 0.5181 max: 2.4066 USE_META, weight: 0.6087 cost: 1.3391 min: 0.5181 max: 2.4066 USE_META, weight: 0.1000 cost: 2.4066 min: 0.5181 max: 2.4066 USE_META, weight: 0.3334 cost: 1.9169 min: 0.5181 max: 2.4066 USE_META, weight: 0.1580 cost: 2.2849 min: 0.5181 max: 2.4066 USE_META, weight: 0.1140 cost: 2.3772 min: 0.5181 max: 2.4066 USE_META, weight: 0.5034 cost: 1.5601 min: 0.5181 max: 2.4066 USE_META, weight: 0.3412 cost: 1.9004 min: 0.5181 max: 2.4066 USE_META, weight: 0.5863 cost: 1.3861 min: 0.5181 max: 2.4066 USE_META, weight: 0.7065 cost: 1.1338 min: 0.5181 max: 2.4066 USE_META, weight: 0.3906 cost: 1.7967 min: 0.5181 max: 2.4066 USE_META, weight: 0.5863 cost: 1.3861 min: 0.5181 max: 2.4066 USE_META, weight: 0.7065 cost: 1.1338 min: 0.5181 max: 2.4066 USE_META, weight: 0.7396 cost: 1.0644 min: 0.5181 max: 2.4066 USE_META, weight: 0.6052 cost: 1.3464 min: 0.5181 max: 2.4066 USE_META, weight: 0.5627 cost: 1.4357 min: 0.5181 max: 2.4066 USE_META, weight: 0.1572 cost: 2.2865 min: 0.5181 max: 2.4066 USE_META, weight: 0.4503 cost: 1.6716 min: 0.5181 max: 2.4066 USE_META, weight: 0.5065 cost: 1.5536 min: 0.5181 max: 2.4066 USE_META, weight: 0.4884 cost: 1.5916 min: 0.5181 max: 2.4066 USE_META, weight: 0.4526 cost: 1.6667 min: 0.5181 max: 2.4066 USE_META, weight: 0.5010 cost: 1.5652 min: 0.5181 max: 2.4066 USE_META, weight: 0.4350 cost: 1.7036 min: 0.5181 max: 2.4066 USE_META, weight: 0.8033 cost: 0.9308 min: 0.5181 max: 2.4066 USE_META, weight: 0.9168 cost: 0.6926 min: 0.5181 max: 2.4066 USE_META, weight: 0.8247 cost: 0.8859 min: 0.5181 max: 2.4066 USE_META, weight: 0.4446 cost: 1.6835 min: 0.5181 max: 2.4066 USE_META, weight: 0.7791 cost: 0.9815 min: 0.5181 max: 2.4066 USE_META, weight: 0.3343 cost: 1.9148 min: 0.5181 max: 2.4066 USE_META, weight: 0.3940 cost: 1.7897 min: 0.5181 max: 2.4066 USE_META, weight: 0.4815 cost: 1.6061 min: 0.5181 max: 2.4066 USE_META, weight: 0.5454 cost: 1.4720 min: 0.5181 max: 2.4066 USE_META, weight: 0.6396 cost: 1.2743 min: 0.5181 max: 2.4066 USE_META, weight: 0.6410 cost: 1.2715 min: 0.5181 max: 2.4066 USE_META, weight: 0.6403 cost: 1.2729 min: 0.5181 max: 2.4066 USE_META, weight: 0.6388 cost: 1.2761 min: 0.5181 max: 2.4066 USE_META, weight: 0.6394 cost: 1.2747 min: 0.5181 max: 2.4066 USE_META, weight: 0.9128 cost: 0.7011 min: 0.5181 max: 2.4066 USE_META, weight: 0.8247 cost: 0.8859 min: 0.5181 max: 2.4066 USE_META, weight: 0.6569 cost: 1.2379 min: 0.5181 max: 2.4066 USE_META, weight: 0.4901 cost: 1.5880 min: 0.5181 max: 2.4066 USE_META, weight: 0.6895 cost: 1.1696 min: 0.5181 max: 2.4066 USE_META, weight: 0.8247 cost: 0.8859 min: 0.5181 max: 2.4066 USE_META, weight: 0.2470 cost: 2.0982 min: 0.5181 max: 2.4066 USE_META, weight: 0.8247 cost: 0.8859 min: 0.5181 max: 2.4066 USE_META, weight: 0.4727 cost: 1.6245 min: 0.5181 max: 2.4066 USE_META, weight: 0.9168 cost: 0.6926 min: 0.5181 max: 2.4066 USE_META, weight: 0.6121 cost: 1.3320 min: 0.5181 max: 2.4066 USE_META, weight: 0.2067 cost: 2.1828 min: 0.5181 max: 2.4066 USE_META, weight: 0.5034 cost: 1.5601 min: 0.5181 max: 2.4066 USE_META, weight: 0.4197 cost: 1.7356 min: 0.5181 max: 2.4066 USE_META, weight: 0.3955 cost: 1.7866 min: 0.5181 max: 2.4066 USE_META, weight: 0.6366 cost: 1.2806 min: 0.5181 max: 2.4066 USE_META, weight: 0.6415 cost: 1.2704 min: 0.5181 max: 2.4066 USE_META, weight: 0.6366 cost: 1.2805 min: 0.5181 max: 2.4066 USE_META, weight: 0.6365 cost: 1.2808 min: 0.5181 max: 2.4066 USE_META, weight: 0.6354 cost: 1.2831 min: 0.5181 max: 2.4066 USE_META, weight: 0.6415 cost: 1.2704 min: 0.5181 max: 2.4066 USE_META, weight: 0.6365 cost: 1.2808 min: 0.5181 max: 2.4066 USE_META, weight: 0.6361 cost: 1.2817 min: 0.5181 max: 2.4066 USE_META, weight: 0.6365 cost: 1.2808 min: 0.5181 max: 2.4066 USE_META, weight: 0.6366 cost: 1.2805 min: 0.5181 max: 2.4066 USE_META, weight: 0.2188 cost: 2.1573 min: 0.5181 max: 2.4066 USE_META, weight: 0.1724 cost: 2.2545 min: 0.5181 max: 2.4066 USE_META, weight: 0.2127 cost: 2.1702 min: 0.5181 max: 2.4066 USE_META, weight: 0.2486 cost: 2.0948 min: 0.5181 max: 2.4066 USE_META, weight: 0.2147 cost: 2.1658 min: 0.5181 max: 2.4066 USE_META, weight: 0.3797 cost: 1.8198 min: 0.5181 max: 2.4066 USE_META, weight: 0.2559 cost: 2.0795 min: 0.5181 max: 2.4066 USE_META, weight: 0.6963 cost: 1.1554 min: 0.5181 max: 2.4066 USE_META, weight: 0.3079 cost: 1.9703 min: 0.5181 max: 2.4066 USE_META, weight: 0.1900 cost: 2.2178 min: 0.5181 max: 2.4066 USE_META, weight: 0.6373 cost: 1.2791 min: 0.5181 max: 2.4066 USE_META, weight: 0.6370 cost: 1.2797 min: 0.5181 max: 2.4066 USE_META, weight: 0.6383 cost: 1.2771 min: 0.5181 max: 2.4066 USE_META, weight: 0.6360 cost: 1.2818 min: 0.5181 max: 2.4066 USE_META, weight: 0.6380 cost: 1.2777 min: 0.5181 max: 2.4066 USE_META, weight: 0.4727 cost: 1.6245 min: 0.5181 max: 2.4066 USE_META, weight: 0.4176 cost: 1.7402 min: 0.5181 max: 2.4066 USE_META, weight: 0.3069 cost: 1.9725 min: 0.5181 max: 2.4066 USE_META, weight: 0.3964 cost: 1.7847 min: 0.5181 max: 2.4066 USE_META, weight: 0.5445 cost: 1.4738 min: 0.5181 max: 2.4066 USE_META, weight: 0.3947 cost: 1.7882 min: 0.5181 max: 2.4066 USE_META, weight: 0.4735 cost: 1.6227 min: 0.5181 max: 2.4066 USE_META, weight: 0.3674 cost: 1.8454 min: 0.5181 max: 2.4066 USE_META, weight: 0.4532 cost: 1.6655 min: 0.5181 max: 2.4066 USE_META, weight: 0.7360 cost: 1.0720 min: 0.5181 max: 2.4066 USE_META, weight: 0.4401 cost: 1.6929 min: 0.5181 max: 2.4066 USE_META, weight: 0.5226 cost: 1.5198 min: 0.5181 max: 2.4066 USE_META, weight: 0.4682 cost: 1.6340 min: 0.5181 max: 2.4066 USE_META, weight: 0.4829 cost: 1.6031 min: 0.5181 max: 2.4066 USE_META, weight: 0.6509 cost: 1.2505 min: 0.5181 max: 2.4066 USE_META, weight: 0.6383 cost: 1.2771 min: 0.5181 max: 2.4066 USE_META, weight: 0.3983 cost: 1.7806 min: 0.5181 max: 2.4066 USE_META, weight: 0.2958 cost: 1.9957 min: 0.5181 max: 2.4066 USE_META, weight: 0.4844 cost: 1.5999 min: 0.5181 max: 2.4066 USE_META, weight: 0.3974 cost: 1.7826 min: 0.5181 max: 2.4066 USE_META, weight: 0.4775 cost: 1.6144 min: 0.5181 max: 2.4066 USE_META, weight: 0.5709 cost: 1.4184 min: 0.5181 max: 2.4066 USE_META, weight: 0.5317 cost: 1.5008 min: 0.5181 max: 2.4066 USE_META, weight: 0.8141 cost: 0.9081 min: 0.5181 max: 2.4066 USE_META, weight: 0.5401 cost: 1.4831 min: 0.5181 max: 2.4066 USE_META, weight: 0.4618 cost: 1.6474 min: 0.5181 max: 2.4066 USE_META, weight: 0.6686 cost: 1.2133 min: 0.5181 max: 2.4066 USE_META, weight: 0.6916 cost: 1.1651 min: 0.5181 max: 2.4066 USE_META, weight: 0.6436 cost: 1.2658 min: 0.5181 max: 2.4066 USE_META, weight: 0.6997 cost: 1.1482 min: 0.5181 max: 2.4066 USE_META, weight: 0.6863 cost: 1.1763 min: 0.5181 max: 2.4066 USE_META, weight: 0.3983 cost: 1.7806 min: 0.5181 max: 2.4066 USE_META, weight: 0.1770 cost: 2.2450 min: 0.5181 max: 2.4066 USE_META, weight: 0.3729 cost: 1.8338 min: 0.5181 max: 2.4066 USE_META, weight: 0.2403 cost: 2.1121 min: 0.5181 max: 2.4066 USE_META, weight: 0.3979 cost: 1.7814 min: 0.5181 max: 2.4066 USE_META, weight: 0.2537 cost: 2.0840 min: 0.5181 max: 2.4066 USE_META, weight: 0.5996 cost: 1.3582 min: 0.5181 max: 2.4066 USE_META, weight: 0.6005 cost: 1.3564 min: 0.5181 max: 2.4066 USE_META, weight: 0.6080 cost: 1.3406 min: 0.5181 max: 2.4066 USE_META, weight: 0.6039 cost: 1.3492 min: 0.5181 max: 2.4066 USE_META, weight: 0.6056 cost: 1.3457 min: 0.5181 max: 2.4066 USE_META, weight: 0.6019 cost: 1.3534 min: 0.5181 max: 2.4066 USE_META, weight: 0.6005 cost: 1.3564 min: 0.5181 max: 2.4066 USE_META, weight: 0.6342 cost: 1.2856 min: 0.5181 max: 2.4066 USE_META, weight: 0.6077 cost: 1.3413 min: 0.5181 max: 2.4066 USE_META, weight: 0.4818 cost: 1.6054 min: 0.5181 max: 2.4066 USE_META, weight: 0.8072 cost: 0.9226 min: 0.5181 max: 2.4066 USE_META, weight: 0.8106 cost: 0.9155 min: 0.5181 max: 2.4066 USE_META, weight: 0.9700 cost: 0.5810 min: 0.5181 max: 2.4066 USE_META, weight: 0.6719 cost: 1.2066 min: 0.5181 max: 2.4066 USE_META, weight: 0.7935 cost: 0.9513 min: 0.5181 max: 2.4066 USE_META, weight: 0.8580 cost: 0.8160 min: 0.5181 max: 2.4066 USE_META, weight: 0.9700 cost: 0.5810 min: 0.5181 max: 2.4066 USE_META, weight: 0.7461 cost: 1.0508 min: 0.5181 max: 2.4066 USE_META, weight: 0.7935 cost: 0.9513 min: 0.5181 max: 2.4066 USE_META, weight: 0.8777 cost: 0.7747 min: 0.5181 max: 2.4066 USE_META, weight: 0.8072 cost: 0.9226 min: 0.5181 max: 2.4066 USE_META, weight: 0.4195 cost: 1.7361 min: 0.5181 max: 2.4066 USE_META, weight: 0.3747 cost: 1.8301 min: 0.5181 max: 2.4066 USE_META, weight: 0.4483 cost: 1.6758 min: 0.5181 max: 2.4066 USE_META, weight: 0.3731 cost: 1.8335 min: 0.5181 max: 2.4066 USE_META, weight: 0.2253 cost: 2.1437 min: 0.5181 max: 2.4066 USE_META, weight: 0.5909 cost: 1.3765 min: 0.5181 max: 2.4066 USE_META, weight: 0.5055 cost: 1.5557 min: 0.5181 max: 2.4066 USE_META, weight: 0.4134 cost: 1.7490 min: 0.5181 max: 2.4066 USE_META, weight: 0.3828 cost: 1.8131 min: 0.5181 max: 2.4066 USE_META, weight: 0.5777 cost: 1.4042 min: 0.5181 max: 2.4066 USE_META, weight: 0.6073 cost: 1.3421 min: 0.5181 max: 2.4066 USE_META, weight: 0.4972 cost: 1.5731 min: 0.5181 max: 2.4066 USE_META, weight: 0.4144 cost: 1.7468 min: 0.5181 max: 2.4066 USE_META, weight: 0.3880 cost: 1.8023 min: 0.5181 max: 2.4066 USE_META, weight: 0.5859 cost: 1.3869 min: 0.5181 max: 2.4066 USE_META, weight: 0.9700 cost: 0.5810 min: 0.5181 max: 2.4066 USE_META, weight: 0.6079 cost: 1.3408 min: 0.5181 max: 2.4066 USE_META, weight: 0.9527 cost: 0.6173 min: 0.5181 max: 2.4066 USE_META, weight: 0.6270 cost: 1.3007 min: 0.5181 max: 2.4066 USE_META, weight: 0.7461 cost: 1.0508 min: 0.5181 max: 2.4066 USE_META, weight: 0.6363 cost: 1.2812 min: 0.5181 max: 2.4066 USE_META, weight: 0.6349 cost: 1.2841 min: 0.5181 max: 2.4066 USE_META, weight: 0.6362 cost: 1.2815 min: 0.5181 max: 2.4066 USE_META, weight: 0.6352 cost: 1.2836 min: 0.5181 max: 2.4066 USE_META, weight: 0.6350 cost: 1.2840 min: 0.5181 max: 2.4066 USE_META, weight: 0.6399 cost: 1.2736 min: 0.5181 max: 2.4066 USE_META, weight: 0.6383 cost: 1.2771 min: 0.5181 max: 2.4066 USE_META, weight: 0.6383 cost: 1.2771 min: 0.5181 max: 2.4066 USE_META, weight: 0.6383 cost: 1.2771 min: 0.5181 max: 2.4066 USE_META, weight: 1.0000 cost: 0.5181 min: 0.5181 max: 2.4066 USE_META, weight: 0.9831 cost: 0.5536 min: 0.5181 max: 2.4066 USE_META, weight: 0.6888 cost: 1.1710 min: 0.5181 max: 2.4066 USE_META, weight: 0.6883 cost: 1.1722 min: 0.5181 max: 2.4066 USE_META, weight: 0.5757 cost: 1.4084 min: 0.5181 max: 2.4066 USE_META, weight: 0.5440 cost: 1.4749 min: 0.5181 max: 2.4066 USE_META, weight: 0.3571 cost: 1.8671 min: 0.5181 max: 2.4066 USE_META, weight: 0.1789 cost: 2.2411 min: 0.5181 max: 2.4066 USE_META, weight: 0.5035 cost: 1.5598 min: 0.5181 max: 2.4066 USE_META, weight: 0.5166 cost: 1.5324 min: 0.5181 max: 2.4066 USE_META, weight: 0.4332 cost: 1.7075 min: 0.5181 max: 2.4066 USE_META, weight: 0.4629 cost: 1.6451 min: 0.5181 max: 2.4066 USE_META, weight: 0.9105 cost: 0.7058 min: 0.5181 max: 2.4066 USE_META, weight: 0.3965 cost: 1.7845 min: 0.5181 max: 2.4066 USE_META, weight: 0.4976 cost: 1.5723 min: 0.5181 max: 2.4066 USE_META, weight: 0.4155 cost: 1.7446 min: 0.5181 max: 2.4066 USE_META, weight: 0.5040 cost: 1.5589 min: 0.5181 max: 2.4066 USE_META, weight: 0.3582 cost: 1.8648 min: 0.5181 max: 2.4066 USE_META, weight: 0.3412 cost: 1.9004 min: 0.5181 max: 2.4066 USE_META, weight: 0.5727 cost: 1.4147 min: 0.5181 max: 2.4066 USE_META, weight: 0.6403 cost: 1.2729 min: 0.5181 max: 2.4066 USE_META, weight: 0.7772 cost: 0.9855 min: 0.5181 max: 2.4066 USE_META, weight: 0.6411 cost: 1.2712 min: 0.5181 max: 2.4066 USE_META, weight: 0.7975 cost: 0.9430 min: 0.5181 max: 2.4066 USE_META, weight: 0.7044 cost: 1.1383 min: 0.5181 max: 2.4066 USE_META, weight: 0.7491 cost: 1.0445 min: 0.5181 max: 2.4066 USE_META, weight: 0.7584 cost: 1.0250 min: 0.5181 max: 2.4066 USE_META, weight: 0.9586 cost: 0.6049 min: 0.5181 max: 2.4066 USE_META, weight: 0.4888 cost: 1.5906 min: 0.5181 max: 2.4066 USE_META, weight: 0.5159 cost: 1.5339 min: 0.5181 max: 2.4066 USE_META, weight: 0.6343 cost: 1.2854 min: 0.5181 max: 2.4066 USE_META, weight: 0.6365 cost: 1.2807 min: 0.5181 max: 2.4066 USE_META, weight: 0.6365 cost: 1.2807 min: 0.5181 max: 2.4066 USE_META, weight: 0.6383 cost: 1.2771 min: 0.5181 max: 2.4066 USE_META, weight: 0.6352 cost: 1.2836 min: 0.5181 max: 2.4066 USE_META, weight: 0.4551 cost: 1.6614 min: 0.5181 max: 2.4066 USE_META, weight: 0.4752 cost: 1.6193 min: 0.5181 max: 2.4066 USE_META, weight: 0.4504 cost: 1.6713 min: 0.5181 max: 2.4066 USE_META, weight: 0.3209 cost: 1.9430 min: 0.5181 max: 2.4066 USE_META, weight: 0.5780 cost: 1.4036 min: 0.5181 max: 2.4066 USE_META, weight: 0.3009 cost: 1.9850 min: 0.5181 max: 2.4066 USE_META, weight: 0.2291 cost: 2.1356 min: 0.5181 max: 2.4066 USE_META, weight: 0.3199 cost: 1.9452 min: 0.5181 max: 2.4066 USE_META, weight: 0.1840 cost: 2.2303 min: 0.5181 max: 2.4066 USE_META, weight: 0.2283 cost: 2.1375 min: 0.5181 max: 2.4066 USE_META, weight: 0.4843 cost: 1.6001 min: 0.5181 max: 2.4066 USE_META, weight: 0.4920 cost: 1.5841 min: 0.5181 max: 2.4066 USE_META, weight: 0.3612 cost: 1.8586 min: 0.5181 max: 2.4066 USE_META, weight: 0.3488 cost: 1.8844 min: 0.5181 max: 2.4066 USE_META, weight: 0.4471 cost: 1.6782 min: 0.5181 max: 2.4066 USE_META, weight: 0.8366 cost: 0.8609 min: 0.5181 max: 2.4066 USE_META, weight: 0.6470 cost: 1.2587 min: 0.5181 max: 2.4066 USE_META, weight: 0.2372 cost: 2.1186 min: 0.5181 max: 2.4066 USE_META, weight: 0.7524 cost: 1.0376 min: 0.5181 max: 2.4066 USE_META, weight: 0.4050 cost: 1.7666 min: 0.5181 max: 2.4066 USE_META, weight: 0.6502 cost: 1.2521 min: 0.5181 max: 2.4066 USE_META, weight: 0.3904 cost: 1.7972 min: 0.5181 max: 2.4066 USE_META, weight: 0.5723 cost: 1.4155 min: 0.5181 max: 2.4066 USE_META, weight: 0.3903 cost: 1.7975 min: 0.5181 max: 2.4066 USE_META, weight: 0.3904 cost: 1.7972 min: 0.5181 max: 2.4066 USE_META, weight: 0.3904 cost: 1.7972 min: 0.5181 max: 2.4066 USE_META, weight: 0.6137 cost: 1.3286 min: 0.5181 max: 2.4066 USE_META, weight: 0.5222 cost: 1.5207 min: 0.5181 max: 2.4066 USE_EVALUE, weight: 0.8812 eval: 4.0810 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.8812 eval: 4.0810 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.8812 eval: 4.0810 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.2456 eval: 25.8840 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.2456 eval: 25.8840 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.2456 eval: 25.8840 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.7712 eval: 7.8539 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.7712 eval: 7.8539 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.7712 eval: 7.8539 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1476 eval: 29.2430 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1476 eval: 29.2430 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1476 eval: 29.2430 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.3155 eval: 23.4860 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.3155 eval: 23.4860 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.3155 eval: 23.4860 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.2724 eval: 24.9620 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.2724 eval: 24.9620 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.2724 eval: 24.9620 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.7267 eval: 9.3804 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.7267 eval: 9.3804 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.7267 eval: 9.3804 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.6941 eval: 10.5000 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.6941 eval: 10.5000 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.6941 eval: 10.5000 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1527 eval: 29.0690 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1527 eval: 29.0690 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1527 eval: 29.0690 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1285 eval: 29.9000 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1285 eval: 29.9000 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1285 eval: 29.9000 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.3409 eval: 22.6130 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.3409 eval: 22.6130 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.3409 eval: 22.6130 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 1.0000 eval: 0.0069 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 1.0000 eval: 0.0069 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 1.0000 eval: 0.0069 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1000 eval: 30.8770 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1000 eval: 30.8770 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1000 eval: 30.8770 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.6173 eval: 13.1350 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.6173 eval: 13.1350 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.6173 eval: 13.1350 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.4955 eval: 17.3130 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.4955 eval: 17.3130 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.4955 eval: 17.3130 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.2202 eval: 26.7540 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.2202 eval: 26.7540 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.2202 eval: 26.7540 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1354 eval: 29.6640 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1354 eval: 29.6640 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.1354 eval: 29.6640 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.4215 eval: 19.8500 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.4215 eval: 19.8500 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.4215 eval: 19.8500 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.7711 eval: 7.8579 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.7711 eval: 7.8579 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.7711 eval: 7.8579 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.2079 eval: 27.1750 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.2079 eval: 27.1750 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.2079 eval: 27.1750 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.4357 eval: 19.3610 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.4357 eval: 19.3610 min: 0.0069 max: 30.8770 USE_EVALUE, weight: 0.4357 eval: 19.3610 min: 0.0069 max: 30.8770 Number of contacts in models: 237 Number of contacts in alignments: 63 NUMB_ALIGNS: 63 Adding 8066 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -247.7089, CN propb: -247.7089 weights: 0.2338 constraints: 963 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 963 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 963 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 7103 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 7103 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 8066 # command: