# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0310/ # command:# Making conformation for sequence T0310 numbered 1 through 425 Created new target T0310 from T0310.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0310/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0310//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0310/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0310//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0310/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0310/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0310/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qi1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0310/1qi1A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0310/1qi1A/merged-good-all-a2m.gz for input Trying 1qi1A/merged-good-all-a2m Error: Couldn't open file 1qi1A/merged-good-all-a2m or 1qi1A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1k75A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1k75A expands to /projects/compbio/data/pdb/1k75.pdb.gz 1k75A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1791, because occupancy 0.5 <= existing 0.500 in 1k75A Skipped atom 2010, because occupancy 0.500 <= existing 0.500 in 1k75A Skipped atom 2012, because occupancy 0.500 <= existing 0.500 in 1k75A Skipped atom 2014, because occupancy 0.500 <= existing 0.500 in 1k75A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2034, because occupancy 0.500 <= existing 0.500 in 1k75A Skipped atom 2036, because occupancy 0.500 <= existing 0.500 in 1k75A Skipped atom 2038, because occupancy 0.500 <= existing 0.500 in 1k75A Skipped atom 2040, because occupancy 0.500 <= existing 0.500 in 1k75A Skipped atom 2042, because occupancy 0.500 <= existing 0.500 in 1k75A Skipped atom 2044, because occupancy 0.500 <= existing 0.500 in 1k75A Skipped atom 2532, because occupancy 0.500 <= existing 0.500 in 1k75A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0310 read from 1k75A/merged-good-all-a2m # 1k75A read from 1k75A/merged-good-all-a2m # adding 1k75A to template set # found chain 1k75A in template set T0310 16 :LATLEPEQRAEI 1k75A 9 :WNSCTAEQQRQL # choosing archetypes in rotamer library T0310 28 :IHHLADLLTDQRDEILLAN 1k75A 36 :VNDILDNVKARGDEALREY T0310 47 :KKDLEEAEGRLAAPLLKR 1k75A 70 :AEEIAAASERLSDELKQA T0310 72 :LNSLAIGLRQIAAS 1k75A 88 :MAVAVKNIETFHTA T0310 87 :QDSVGRVLRR 1k75A 102 :QKLPPVDVET T0310 100 :AKNLELEQVTVPIGVLLVIFE 1k75A 112 :QPGVRCQQVTRPVASVGLYIP T0310 121 :SRPDCL 1k75A 135 :SAPLFS T0310 127 :PQVAALAIASGN 1k75A 143 :LMLATPASIAGC T0310 139 :GLLLKGGKEAAHSNRILH 1k75A 157 :VVLCSPPPIADEILYAAQ T0310 161 :EA 1k75A 175 :LC T0310 167 :GVKEAVQL 1k75A 177 :GVQDVFNV T0310 177 :TR 1k75A 185 :GG T0310 182 :ELDKMIDLIIPRGS 1k75A 198 :ESVPKVDKIFGPGN T0310 196 :SQLVRDIQKAAKGIPVMGHSEGIC 1k75A 215 :TEAKRQVSQRLDGAAIDMPAGPSE T0310 221 :MYVDSEASVDKVTRLVRDS 1k75A 241 :VIADSGATPDFVASDLLSQ T0310 240 :KCEYPAA 1k75A 262 :HGPDSQV T0310 252 :TLLIHRD 1k75A 269 :ILLTPAA T0310 263 :PLFDQIIDMLRVEQVKIHA 1k75A 276 :DMARRVAEAVERQLAELPR T0310 292 :VKSLRTEYGDLELC 1k75A 295 :AETARQALNASRLI T0310 308 :VVDNVQDAIDHIHKYGSSH 1k75A 309 :VTKDLAQCVEISNQYGPEH T0310 328 :DVIVTEDENTA 1k75A 328 :LIIQTRNAREL T0310 346 :DSACVFW 1k75A 344 :SAGSVFL Number of specific fragments extracted= 22 number of extra gaps= 0 total=22 Number of alignments=1 # 1k75A read from 1k75A/merged-good-all-a2m # found chain 1k75A in template set Warning: unaligning (T0310)L50 because of BadResidue code BAD_PEPTIDE in next template residue (1k75A)D59 Warning: unaligning (T0310)E51 because of BadResidue code BAD_PEPTIDE at template residue (1k75A)D59 Warning: unaligning (T0310)E52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1k75A)K60 T0310 16 :LATLEPEQRAEI 1k75A 9 :WNSCTAEQQRQL T0310 28 :IHHLADLLTDQRDEILLANKKD 1k75A 36 :VNDILDNVKARGDEALREYSAK T0310 53 :AE 1k75A 61 :TT T0310 55 :G 1k75A 64 :T T0310 56 :RLAAPLLKRLSL 1k75A 67 :KVSAEEIAAASE T0310 68 :STSKLNSLAIGLRQIAAS 1k75A 84 :LKQAMAVAVKNIETFHTA T0310 90 :VGRVLRRTRIAKNLELEQVTVPIGVLLVIFE 1k75A 102 :QKLPPVDVETQPGVRCQQVTRPVASVGLYIP T0310 121 :SRPDCLPQVAAL 1k75A 134 :GSAPLFSTVLML T0310 133 :AIASGN 1k75A 149 :ASIAGC T0310 139 :GLLLKGGKEAAHSNRILH 1k75A 157 :VVLCSPPPIADEILYAAQ T0310 165 :IHGVKEAVQL 1k75A 175 :LCGVQDVFNV T0310 177 :TR 1k75A 185 :GG T0310 179 :EE 1k75A 188 :QA T0310 184 :DKMIDLIIPRGS 1k75A 200 :VPKVDKIFGPGN T0310 196 :SQLVRDIQKAAKGIPV 1k75A 215 :TEAKRQVSQRLDGAAI T0310 212 :MGHSEGICHMYVDSEASVDKVT 1k75A 232 :MPAGPSEVLVIADSGATPDFVA T0310 234 :RLVRDSKCEYPAAC 1k75A 255 :DLLSQAEHGPDSQV T0310 252 :TLLIHRD 1k75A 269 :ILLTPAA T0310 263 :PLFDQIIDMLRVEQVKIHA 1k75A 276 :DMARRVAEAVERQLAELPR T0310 292 :VKSLRTEYGDLE 1k75A 295 :AETARQALNASR T0310 306 :IEVVDNVQDAIDHIHKYGSSH 1k75A 307 :LIVTKDLAQCVEISNQYGPEH T0310 328 :DVIVTEDENTA 1k75A 328 :LIIQTRNAREL T0310 344 :HV 1k75A 341 :SI T0310 346 :DSACVFWN 1k75A 344 :SAGSVFLG T0310 354 :ASTRFSDG 1k75A 367 :HVLPTYGY Number of specific fragments extracted= 25 number of extra gaps= 1 total=47 Number of alignments=2 # 1k75A read from 1k75A/merged-good-all-a2m # found chain 1k75A in template set Warning: unaligning (T0310)L57 because of BadResidue code BAD_PEPTIDE in next template residue (1k75A)D59 T0310 16 :LATLEPEQRAEI 1k75A 9 :WNSCTAEQQRQL T0310 33 :DLLTDQRDEILLANKKDLEEAEGR 1k75A 34 :RTVNDILDNVKARGDEALREYSAK T0310 58 :AAPLLKRLS 1k75A 69 :SAEEIAAAS T0310 67 :LSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQV 1k75A 79 :RLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVASVGLYIPGGSAPLFST T0310 130 :AALAIASGN 1k75A 146 :ATPASIAGC T0310 139 :GLLLKGGKEAAHSNRILH 1k75A 157 :VVLCSPPPIADEILYAAQ T0310 165 :IHGVKEAVQLVN 1k75A 175 :LCGVQDVFNVGG T0310 177 :TREEVELDKMIDLIIPRGSS 1k75A 193 :LAFGTESVPKVDKIFGPGNA T0310 197 :QLVRDIQK 1k75A 216 :EAKRQVSQ T0310 206 :AKGIPVMGHSEGICH 1k75A 224 :RLDGAAIDMPAGPSE T0310 221 :MYVDSEASVDKVTRLVRD 1k75A 241 :VIADSGATPDFVASDLLS T0310 239 :SKCEYPAAC 1k75A 261 :EHGPDSQVI T0310 253 :LLIH 1k75A 270 :LLTP T0310 260 :LRTPLFDQIIDMLRVEQV 1k75A 274 :AADMARRVAEAVERQLAE T0310 289 :LTFVKSLRTEYGDLELC 1k75A 292 :LPRAETARQALNASRLI T0310 308 :VVDNVQDAIDHIHKYGSSH 1k75A 309 :VTKDLAQCVEISNQYGPEH T0310 328 :DVIVTEDENTA 1k75A 328 :LIIQTRNAREL T0310 346 :DSACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWL 1k75A 344 :SAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV Number of specific fragments extracted= 18 number of extra gaps= 1 total=65 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bxsA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bxsA expands to /projects/compbio/data/pdb/1bxs.pdb.gz 1bxsA:# T0310 read from 1bxsA/merged-good-all-a2m # 1bxsA read from 1bxsA/merged-good-all-a2m # adding 1bxsA to template set # found chain 1bxsA in template set T0310 2 :VEQQGEMARSGGR 1bxsA 59 :VDKAVKAARQAFQ T0310 15 :MLATLEPEQRAEIIHHLADLLTDQRDEILL 1bxsA 75 :PWRTMDASERGRLLNKLADLIERDRLLLAT T0310 50 :LEEAEGR 1bxsA 105 :MEAMNGG T0310 59 :APLLKR 1bxsA 112 :KLFSNA T0310 68 :STSKLNSLAIGLRQIAASSQDSVGRVLRR 1bxsA 118 :YLMDLGGCIKTLRYCAGWADKIQGRTIPM T0310 100 :AKNLELEQVTVPIGVLLVIFE 1bxsA 147 :DGNFFTYTRSEPVGVCGQIIP T0310 121 :SRP 1bxsA 169 :NFP T0310 124 :DCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1bxsA 173 :LMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEA T0310 167 :GV 1bxsA 212 :GF T0310 169 :KEAVQLVNTR 1bxsA 215 :PGVVNIVPGY T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKAA 1bxsA 230 :AAISSHMDVDKVAFTGSTEVGKLIKEAA T0310 207 :KGIPVMGHSEGICHMYVDSEASVDKVTRLVRDS 1bxsA 261 :NLKRVSLELGGKSPCIVFADADLDNAVEFAHQG T0310 240 :KCEYPAACNALETLLIHRDLLRT 1bxsA 295 :FYHQGQCCIAASRLFVEESIYDE T0310 264 :LFDQIIDMLRVEQVKIHAGPK 1bxsA 318 :FVRRSVERAKKYVLGNPLTPG T0310 285 :FASYLTFV 1bxsA 341 :QGPQIDKE T0310 293 :KSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSR 1bxsA 394 :RIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGREL T0310 381 :GPVGLEGLLTTKWLLRGKDHV 1bxsA 478 :GEYGFHEYTEVKTVTIKISQK Number of specific fragments extracted= 17 number of extra gaps= 0 total=82 Number of alignments=4 # 1bxsA read from 1bxsA/merged-good-all-a2m # found chain 1bxsA in template set T0310 2 :VEQQGEMARSGGR 1bxsA 59 :VDKAVKAARQAFQ T0310 15 :MLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1bxsA 75 :PWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKL T0310 65 :LSLST 1bxsA 114 :FSNAY T0310 70 :SKLNSLAIGLRQIAASSQDSVGRVLRR 1bxsA 120 :MDLGGCIKTLRYCAGWADKIQGRTIPM T0310 100 :AKNLELEQVTVPIGVLLVIFESRPDCLPQVAAL 1bxsA 147 :DGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKI T0310 133 :AIASGNGLLLKGGKEAAHSNRILHLLTQEA 1bxsA 182 :ALSCGNTVVVKPAEQTPLTALHMGSLIKEA T0310 167 :GV 1bxsA 212 :GF T0310 169 :KEAVQLVNT 1bxsA 215 :PGVVNIVPG T0310 178 :R 1bxsA 225 :G T0310 179 :EEVEL 1bxsA 227 :TAGAA T0310 184 :DKMIDLIIPRGSSQLVRDIQKAA 1bxsA 235 :HMDVDKVAFTGSTEVGKLIKEAA T0310 207 :KGIPV 1bxsA 261 :NLKRV T0310 212 :MGHS 1bxsA 267 :LELG T0310 217 :GICHMYVDSEASVDKVT 1bxsA 271 :GKSPCIVFADADLDNAV T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLR 1bxsA 289 :FAHQGVFYHQGQCCIAASRLFVEESIYD T0310 263 :PLFDQIIDMLRVEQVKIHAGPK 1bxsA 317 :EFVRRSVERAKKYVLGNPLTPG T0310 285 :FASYLTF 1bxsA 341 :QGPQIDK T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWN 1bxsA 393 :MRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVN T0310 354 :ASTRFSDGYRFGLGAEVG 1bxsA 461 :AQCPFGGFKMSGNGRELG T0310 372 :ISTSRIHARGPVGLEGLL 1bxsA 480 :YGFHEYTEVKTVTIKISQ Number of specific fragments extracted= 20 number of extra gaps= 0 total=102 Number of alignments=5 # 1bxsA read from 1bxsA/merged-good-all-a2m # found chain 1bxsA in template set T0310 2 :VEQQGEMARSGGR 1bxsA 59 :VDKAVKAARQAFQ T0310 15 :MLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLE 1bxsA 75 :PWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGG T0310 57 :LAAPLLK 1bxsA 112 :KLFSNAY T0310 70 :SKLNSLAIGLRQIAASSQDSV 1bxsA 119 :LMDLGGCIKTLRYCAGWADKI T0310 93 :VLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQV 1bxsA 140 :QGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFL T0310 130 :AALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1bxsA 179 :IGPALSCGNTVVVKPAEQTPLTALHMGSLIKEA T0310 167 :GVKEAVQLVN 1bxsA 212 :GFPPGVVNIV T0310 177 :TREEVELDKMIDLIIPRGSSQLVRDIQK 1bxsA 228 :AGAAISSHMDVDKVAFTGSTEVGKLIKE T0310 205 :AAKGIPVMGHSEGICHMYVDSEASVDKVTRLVRDSKC 1bxsA 259 :KSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVF T0310 242 :EYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQV 1bxsA 297 :HQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLG T0310 278 :KIHAGPKFASYLTFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTR 1bxsA 379 :YFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSV T0310 360 :DGYRFGLGAEVGISTSRIH 1bxsA 459 :VSAQCPFGGFKMSGNGREL T0310 381 :GPVGLEGLLTTKWLLRG 1bxsA 478 :GEYGFHEYTEVKTVTIK Number of specific fragments extracted= 13 number of extra gaps= 0 total=115 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cw3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0310/1cw3A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0310/1cw3A/merged-good-all-a2m.gz for input Trying 1cw3A/merged-good-all-a2m Error: Couldn't open file 1cw3A/merged-good-all-a2m or 1cw3A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ag8A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ag8A expands to /projects/compbio/data/pdb/1ag8.pdb.gz 1ag8A:# T0310 read from 1ag8A/merged-good-all-a2m # 1ag8A read from 1ag8A/merged-good-all-a2m # adding 1ag8A to template set # found chain 1ag8A in template set T0310 2 :VEQQGEMARSGGR 1ag8A 59 :VDRAVKAARAAFQ T0310 15 :MLATLEPEQRAEIIHHLADLLTDQRDEILL 1ag8A 75 :PWRRMDASERGRLLNRLADLIERDRTYLAA T0310 50 :LEEAEGR 1ag8A 105 :LETLDNG T0310 59 :APLLKR 1ag8A 112 :KPYIIS T0310 68 :STSKLNSLAIGLRQIAASSQDSVGRVLRR 1ag8A 118 :YLVDLDMVLKCLRYYAGWADKYHGKTIPI T0310 100 :AKNLELEQVTVPIGVLLVIFE 1ag8A 147 :DGDYFSYTRHEPVGVCGQIIP T0310 121 :SRP 1ag8A 169 :NFP T0310 124 :DCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1ag8A 173 :LMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEA T0310 167 :GV 1ag8A 212 :GF T0310 169 :KEAVQLVNTR 1ag8A 215 :PGVVNVIPGF T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKAA 1ag8A 230 :AAIASHEDVDKVAFTGSTEVGHLIQVAA T0310 207 :KGIPVMGHSEGICHMYVDSEASVDKVTRLVRDS 1ag8A 261 :NLKRVTLEIGGKSPNIIMSDADMDWAVEQAHFA T0310 240 :KCEYPAACNALETLLIHRDLLRT 1ag8A 295 :FFNQGQCCCAGSRTFVQEDIYAE T0310 264 :LFDQIIDMLRVEQVKIHAGPK 1ag8A 318 :FVERSVARAKSRVVGNPFDSR T0310 285 :FASYLTFV 1ag8A 341 :QGPQVDET T0310 293 :KSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSR 1ag8A 394 :TIAKEEIFGPVMQILKFKSMEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKLSGSGREL T0310 381 :GPVGLEGLLTTKWLLRGKDHV 1ag8A 478 :GEYGLQAYTEVKTVTVRVPQK Number of specific fragments extracted= 17 number of extra gaps= 0 total=132 Number of alignments=7 # 1ag8A read from 1ag8A/merged-good-all-a2m # found chain 1ag8A in template set T0310 2 :VEQQGEMARSGGR 1ag8A 59 :VDRAVKAARAAFQ T0310 15 :MLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1ag8A 75 :PWRRMDASERGRLLNRLADLIERDRTYLAALETLDNGKP T0310 65 :LSLST 1ag8A 114 :YIISY T0310 70 :SKLNSLAIGLRQIAASSQDSVGRVLRR 1ag8A 120 :VDLDMVLKCLRYYAGWADKYHGKTIPI T0310 100 :AKNLELEQVTVPIGVLLVIFESRPDCLPQVAAL 1ag8A 147 :DGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKL T0310 133 :AIASGNGLLLKGGKEAAHSNRILHLLTQEA 1ag8A 182 :ALATGNVVVMKVAEQTPLTALYVANLIKEA T0310 167 :GV 1ag8A 212 :GF T0310 169 :KEAVQLVNT 1ag8A 215 :PGVVNVIPG T0310 178 :R 1ag8A 225 :G T0310 179 :EEVEL 1ag8A 227 :TAGAA T0310 184 :DKMIDLIIPRGSSQLVRDIQKAA 1ag8A 235 :HEDVDKVAFTGSTEVGHLIQVAA T0310 207 :KGIPV 1ag8A 261 :NLKRV T0310 212 :MGHS 1ag8A 267 :LEIG T0310 217 :GICHMYVDSEASVDKVT 1ag8A 271 :GKSPNIIMSDADMDWAV T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLR 1ag8A 289 :QAHFALFFNQGQCCCAGSRTFVQEDIYA T0310 263 :PLFDQIIDMLRVEQVKIHAGPK 1ag8A 317 :EFVERSVARAKSRVVGNPFDSR T0310 285 :FASYLTF 1ag8A 341 :QGPQVDE T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWN 1ag8A 393 :MTIAKEEIFGPVMQILKFKSMEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVN T0310 354 :ASTRFSDGYRFGLGAEVG 1ag8A 461 :AQSPFGGYKLSGSGRELG T0310 372 :ISTSRIHARGPVGLEGLL 1ag8A 480 :YGLQAYTEVKTVTVRVPQ Number of specific fragments extracted= 20 number of extra gaps= 0 total=152 Number of alignments=8 # 1ag8A read from 1ag8A/merged-good-all-a2m # found chain 1ag8A in template set T0310 2 :VEQQGEMARSGGR 1ag8A 59 :VDRAVKAARAAFQ T0310 15 :MLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDL 1ag8A 75 :PWRRMDASERGRLLNRLADLIERDRTYLAALETLDN T0310 57 :LAAPLLKRL 1ag8A 112 :KPYIISYLV T0310 72 :LNSLAIGLRQIAASSQDS 1ag8A 121 :DLDMVLKCLRYYAGWADK T0310 92 :RVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQV 1ag8A 139 :YHGKTIPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQA T0310 130 :AALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1ag8A 179 :LGPALATGNVVVMKVAEQTPLTALYVANLIKEA T0310 167 :GVKEAVQLVN 1ag8A 212 :GFPPGVVNVI T0310 177 :TREEVELDKMIDLIIPRGSSQLVRDIQK 1ag8A 228 :AGAAIASHEDVDKVAFTGSTEVGHLIQV T0310 205 :AAKGIPVMGHSEGICHMYVDSEASVDKVTRLVRDS 1ag8A 259 :KSNLKRVTLEIGGKSPNIIMSDADMDWAVEQAHFA T0310 240 :KCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQV 1ag8A 295 :FFNQGQCCCAGSRTFVQEDIYAEFVERSVARAKSRVVG T0310 278 :KIHAGPKFASYLTFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTR 1ag8A 379 :YFIQPTVFGDLQDGMTIAKEEIFGPVMQILKFKSMEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDV T0310 360 :DGYRFGLGAEVGISTSRIH 1ag8A 459 :FGAQSPFGGYKLSGSGREL T0310 381 :GPVGLEGLLTTKWLLRGK 1ag8A 478 :GEYGLQAYTEVKTVTVRV Number of specific fragments extracted= 13 number of extra gaps= 0 total=165 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bjkA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bjkA expands to /projects/compbio/data/pdb/2bjk.pdb.gz 2bjkA:Skipped atom 202, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 204, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 206, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 208, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 331, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 333, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 335, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 337, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 339, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 341, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 343, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 858, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 860, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 862, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 864, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 1837, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 2273, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 2275, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 2277, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 2279, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 2281, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 2283, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 2285, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 2303, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2305, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2307, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2309, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2311, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2313, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2315, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2317, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2319, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2321, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2323, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2325, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2327, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2329, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2331, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2560, because occupancy 0.300 <= existing 0.700 in 2bjkA Skipped atom 2956, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 3415, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 3417, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 3419, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 3421, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 3684, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 3686, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 3688, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 3690, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 3692, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 4000, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 4002, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 4004, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 4006, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 4008, because occupancy 0.500 <= existing 0.500 in 2bjkA Skipped atom 4010, because occupancy 0.500 <= existing 0.500 in 2bjkA # T0310 read from 2bjkA/merged-good-all-a2m # 2bjkA read from 2bjkA/merged-good-all-a2m # adding 2bjkA to template set # found chain 2bjkA in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILL 2bjkA 76 :AEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEA T0310 50 :LEEAEGR 2bjkA 119 :TLVYEVG T0310 59 :APLLK 2bjkA 126 :KNWVE T0310 68 :STSKLNSLAIGLRQIAASSQDSVGRVLRRTR 2bjkA 131 :ASADVAEAIDFIEYYARAALRYRYPAVEVVP T0310 100 :AKNLELEQVTVPIGVLLVIFE 2bjkA 162 :YPGEDNESFYVPLGAGVVIAP T0310 121 :SRPDCL 2bjkA 184 :NFPVAI T0310 127 :PQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 2bjkA 191 :TGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEA T0310 167 :GV 2bjkA 227 :GF T0310 169 :KEAVQLVNTR 2bjkA 230 :PGVVNFLPGV T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKAA 2bjkA 245 :AYLVEHPRIRFINFTGSLEVGLKIYEAA T0310 207 :KGIPVMGHSEGICHMYVDSEASVDKVT 2bjkA 281 :WFKRAYVETGGKDAIIVDETADFDLAA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRT 2bjkA 309 :GVVVSAYGFQGQKCSAASRLILTQGAYEP T0310 264 :LFDQIIDMLRVEQVKIHA 2bjkA 338 :VLERVLKRAERLSVGPAE T0310 282 :GPKFASYLTFV 2bjkA 357 :NPDLGPVVSAE T0310 293 :KSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFS 2bjkA 412 :RIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGA T0310 360 :DGYRFGLGAEVGIS 2bjkA 481 :GVQPFGGFKLSGTN T0310 381 :GPVGLEGLLTT 2bjkA 495 :AKTGALDYLRL Number of specific fragments extracted= 17 number of extra gaps= 0 total=182 Number of alignments=10 # 2bjkA read from 2bjkA/merged-good-all-a2m # found chain 2bjkA in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 2bjkA 76 :AEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKN T0310 65 :LSLSTSKLNSLAIGLRQIAASSQDSVGRVLRR 2bjkA 128 :WVEASADVAEAIDFIEYYARAALRYRYPAVEV T0310 98 :RIAKNLELEQVTVPIGVLLVIFESRPDCLPQVAAL 2bjkA 160 :VPYPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMI T0310 133 :AIASGNGLLLKGGKEAAHSNRILHLLTQEA 2bjkA 197 :PVAVGNTVIAKPAEDAVVVGAKVFEIFHEA T0310 167 :GV 2bjkA 227 :GF T0310 169 :KEAVQLVNT 2bjkA 230 :PGVVNFLPG T0310 178 :R 2bjkA 240 :G T0310 179 :EEVEL 2bjkA 242 :EVGAY T0310 184 :DKMIDLIIPRGSSQLVRDIQKAA 2bjkA 250 :HPRIRFINFTGSLEVGLKIYEAA T0310 207 :KGIPV 2bjkA 281 :WFKRA T0310 212 :MGHS 2bjkA 287 :VETG T0310 217 :GICHMYVDSEASVDKVT 2bjkA 291 :GKDAIIVDETADFDLAA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLR 2bjkA 309 :GVVVSAYGFQGQKCSAASRLILTQGAYE T0310 263 :PLFDQIIDMLRVEQVKIH 2bjkA 337 :PVLERVLKRAERLSVGPA T0310 281 :AGPKFASYLTF 2bjkA 356 :ENPDLGPVVSA T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWN 2bjkA 411 :ARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFN T0310 354 :ASTRFSDGYRFGLGAEVG 2bjkA 481 :GVQPFGGFKLSGTNAKTG T0310 372 :ISTSRIHARG 2bjkA 501 :DYLRLFLEMK Number of specific fragments extracted= 18 number of extra gaps= 0 total=200 Number of alignments=11 # 2bjkA read from 2bjkA/merged-good-all-a2m # found chain 2bjkA in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDL 2bjkA 76 :AEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEV T0310 62 :LKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVL 2bjkA 128 :WVEASADVAEAIDFIEYYARAALRYRYPAVEVV T0310 99 :IAKNLELEQVTVPIGVLLVIFESRPDCLPQV 2bjkA 161 :PYPGEDNESFYVPLGAGVVIAPWNFPVAIFT T0310 130 :AALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 2bjkA 194 :IVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEA T0310 167 :GVKEAVQLVN 2bjkA 227 :GFPPGVVNFL T0310 177 :TREEVELDKMIDLIIPRGSSQLVRDIQK 2bjkA 243 :VGAYLVEHPRIRFINFTGSLEVGLKIYE T0310 205 :AAKGIPVMGHSEGICHMYVDSEASVDKVT 2bjkA 279 :QTWFKRAYVETGGKDAIIVDETADFDLAA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQV 2bjkA 309 :GVVVSAYGFQGQKCSAASRLILTQGAYEPVLERVLKRAERLSVG T0310 278 :KIHAGPKFASYLTFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIH 2bjkA 397 :YFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNAKT T0310 380 :RGPVGLEGLLTTKW 2bjkA 498 :GALDYLRLFLEMKA Number of specific fragments extracted= 10 number of extra gaps= 0 total=210 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zumA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0310/1zumA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0310/1zumA/merged-good-all-a2m.gz for input Trying 1zumA/merged-good-all-a2m Error: Couldn't open file 1zumA/merged-good-all-a2m or 1zumA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1euhA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1euhA expands to /projects/compbio/data/pdb/1euh.pdb.gz 1euhA:# T0310 read from 1euhA/merged-good-all-a2m # 1euhA read from 1euhA/merged-good-all-a2m # adding 1euhA to template set # found chain 1euhA in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLE 1euhA 42 :VDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVA T0310 57 :LAAPLLK 1euhA 93 :GYKSAVS T0310 71 :KLNSLAIGLRQIAASSQDSVGRVLRRTRIAK 1euhA 100 :EVVRTAEIINYAAEEGLRMEGEVLEGGSFEA T0310 102 :NLELEQVTVPIGVLLVIFE 1euhA 134 :KKIAVVRREPVGLVLAISP T0310 121 :SRPDCL 1euhA 154 :NYPVNL T0310 127 :PQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1euhA 161 :GSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEA T0310 167 :GV 1euhA 197 :GL T0310 169 :KEAVQLVNTR 1euhA 200 :AGVFNTITGR T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEASVDKVT 1euhA 215 :DYIVEHQAVNFINFTGSTGIGERIGKMAGMRPIMLELGGKDSAIVLEDADLELTA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRT 1euhA 271 :NIIAGAFGYSGQRCTAVKRVLVMESVADE T0310 264 :LFDQIIDMLRVEQVKIHAGPK 1euhA 300 :LVEKIREKVLALTIGNPEDDA T0310 285 :FASYLTFV 1euhA 322 :ITPLIDTK T0310 293 :KSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFS 1euhA 372 :RLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRG T0310 360 :DGYRFGLGAEVGISTSR 1euhA 440 :DNFPFLGAKKSGAGIQG T0310 381 :GPVGLEGLLTTKWLLRGK 1euhA 457 :VKYSIEAMTTVKSVVFDI Number of specific fragments extracted= 15 number of extra gaps= 0 total=225 Number of alignments=13 # 1euhA read from 1euhA/merged-good-all-a2m # found chain 1euhA in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1euhA 42 :VDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKG T0310 65 :LSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTR 1euhA 94 :YKSAVSEVVRTAEIINYAAEEGLRMEGEVLEGGS T0310 99 :IAKNLELEQVTVPIGVLLVIFESRPDCLPQVAAL 1euhA 131 :ASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKI T0310 133 :AIASGNGLLLKGGKEAAHSNRILHLLTQEA 1euhA 167 :ALIAGNVIAFKPPTQGSISGLLLAEAFAEA T0310 167 :GV 1euhA 197 :GL T0310 169 :KEAVQLVNT 1euhA 200 :AGVFNTITG T0310 179 :EEVEL 1euhA 212 :EIGDY T0310 184 :DKMIDLIIPRGSSQLVRDIQKAAKGIPV 1euhA 220 :HQAVNFINFTGSTGIGERIGKMAGMRPI T0310 212 :MGHS 1euhA 249 :LELG T0310 217 :GICHMYVDSEASVDKVT 1euhA 253 :GKDSAIVLEDADLELTA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLR 1euhA 271 :NIIAGAFGYSGQRCTAVKRVLVMESVAD T0310 263 :PLFDQIIDMLRVEQVKIHAGPK 1euhA 299 :ELVEKIREKVLALTIGNPEDDA T0310 285 :FASYLTF 1euhA 322 :ITPLIDT T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWN 1euhA 371 :MRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHIN T0310 354 :ASTRFSDGYRFGLGAEVG 1euhA 440 :DNFPFLGAKKSGAGIQGV T0310 372 :ISTSRIHARGPVGLEG 1euhA 459 :YSIEAMTTVKSVVFDI Number of specific fragments extracted= 16 number of extra gaps= 0 total=241 Number of alignments=14 # 1euhA read from 1euhA/merged-good-all-a2m # found chain 1euhA in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAEGRL 1euhA 42 :VDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKSA T0310 59 :APLL 1euhA 98 :VSEV T0310 70 :SKLNSLAIGLRQIAASSQ 1euhA 102 :VRTAEIINYAAEEGLRME T0310 91 :GRVLRRTRI 1euhA 120 :GEVLEGGSF T0310 100 :AKNLELEQVTVPIGVLLVIFESRPDCLPQV 1euhA 132 :SKKKIAVVRREPVGLVLAISPFNYPVNLAG T0310 130 :AALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1euhA 164 :IAPALIAGNVIAFKPPTQGSISGLLLAEAFAEA T0310 167 :GVKEAVQLVN 1euhA 197 :GLPAGVFNTI T0310 177 :TREEVELDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEASVDKVT 1euhA 213 :IGDYIVEHQAVNFINFTGSTGIGERIGKMAGMRPIMLELGGKDSAIVLEDADLELTA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQV 1euhA 271 :NIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIG T0310 278 :KIHAGPKFASYLTFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTR 1euhA 357 :NLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQ T0310 359 :SDGYRFGLGAEVGISTSRIH 1euhA 437 :RGTDNFPFLGAKKSGAGIQG T0310 381 :GPVGLEGLLTTKWLLR 1euhA 457 :VKYSIEAMTTVKSVVF Number of specific fragments extracted= 12 number of extra gaps= 0 total=253 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ky8A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0310/1ky8A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0310/1ky8A/merged-good-all-a2m.gz for input Trying 1ky8A/merged-good-all-a2m Error: Couldn't open file 1ky8A/merged-good-all-a2m or 1ky8A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ez0A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ez0A expands to /projects/compbio/data/pdb/1ez0.pdb.gz 1ez0A:# T0310 read from 1ez0A/merged-good-all-a2m # 1ez0A read from 1ez0A/merged-good-all-a2m # adding 1ez0A to template set # found chain 1ez0A in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILL 1ez0A 32 :VNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIA T0310 50 :LEEAEGRLAAPLLK 1ez0A 75 :RAHLETALPEVRLT T0310 70 :SKLNSLAIGLRQIAASSQ 1ez0A 89 :GEIARTANQLRLFADVVN T0310 88 :DSVGRVLRRT 1ez0A 109 :SYHQAILDTP T0310 100 :AKNL 1ez0A 119 :NPTR T0310 104 :ELEQVTVPIGVLLVIFE 1ez0A 129 :DIRRQQIALGPVAVFGA T0310 121 :SRP 1ez0A 147 :NFP T0310 124 :DCL 1ez0A 151 :AFS T0310 127 :PQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGV 1ez0A 156 :GGDTASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQL T0310 169 :KEAVQLVNTR 1ez0A 199 :QAIFTLLQGN T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKAA 1ez0A 214 :QALVSHPEIKAVGFTGSVGGGRALFNLA T0310 207 :KGIPVMGHSEGICHMYVDSEA 1ez0A 246 :EPIPFYGELGAINPTFIFPSA T0310 230 :DKVTRLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQ 1ez0A 272 :DLADQFVASMTMGCGQFCTKPGVVFALNTPETQAFIETAQSLIRQQS T0310 286 :AS 1ez0A 320 :ST T0310 293 :KSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTE 1ez0A 372 :PAWEEEIFGPQSLIVVCENVADMLSLSEMLAGSLTATIHAT T0310 334 :DENTAEFFLQHVD 1ez0A 415 :DYPQVSQLIPRLE T0310 347 :SACVFWNASTRFS 1ez0A 430 :AGRLVFNGWPTGV T0310 360 :DGYRFGLGAEVGISTS 1ez0A 446 :YAMVHGGPYPASTHSA T0310 377 :IHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGS 1ez0A 462 :STSVGAEAIHRWLRPVAYQALPESLLPDSLKAEN Number of specific fragments extracted= 19 number of extra gaps= 0 total=272 Number of alignments=16 # 1ez0A read from 1ez0A/merged-good-all-a2m # found chain 1ez0A in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1ez0A 32 :VNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALP T0310 65 :LSLSTSKLNSLAIGLRQIAASSQD 1ez0A 84 :EVRLTGEIARTANQLRLFADVVNS T0310 89 :SVGRVLRR 1ez0A 110 :YHQAILDT T0310 99 :IAKNL 1ez0A 118 :PNPTR T0310 104 :ELEQVTVPIGVLLVIFESRPDCLP 1ez0A 129 :DIRRQQIALGPVAVFGASNFPLAF T0310 128 :QVAAL 1ez0A 156 :GGDTA T0310 133 :AIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGV 1ez0A 162 :ALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQL T0310 169 :KEAVQLVNT 1ez0A 199 :QAIFTLLQG T0310 178 :R 1ez0A 209 :Q T0310 179 :EEVEL 1ez0A 211 :ALGQA T0310 184 :DKMIDLIIPRGSSQLVRDIQKAA 1ez0A 219 :HPEIKAVGFTGSVGGGRALFNLA T0310 207 :KGIPV 1ez0A 246 :EPIPF T0310 212 :MGHS 1ez0A 252 :GELG T0310 217 :GICHMYVDSEA 1ez0A 256 :AINPTFIFPSA T0310 232 :VT 1ez0A 273 :LA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQ 1ez0A 276 :QFVASMTMGCGQFCTKPGVVFALNTPETQAFIETAQSLIRQQS T0310 285 :FASYLTF 1ez0A 319 :PSTLLTP T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTE 1ez0A 371 :HPAWEEEIFGPQSLIVVCENVADMLSLSEMLAGSLTATIHAT T0310 334 :DENTAEFFLQHVD 1ez0A 415 :DYPQVSQLIPRLE T0310 347 :SACVFWN 1ez0A 430 :AGRLVFN T0310 354 :ASTRFSDGYRFGLGAEVG 1ez0A 446 :YAMVHGGPYPASTHSAST T0310 372 :ISTSRIHA 1ez0A 465 :VGAEAIHR T0310 387 :GLLTTKWLLRGKDHVVSDFSEH 1ez0A 473 :WLRPVAYQALPESLLPDSLKAE T0310 409 :GSLKYLHENLP 1ez0A 497 :LEIARAVDGKA Number of specific fragments extracted= 24 number of extra gaps= 0 total=296 Number of alignments=17 # 1ez0A read from 1ez0A/merged-good-all-a2m # found chain 1ez0A in template set T0310 1 :TVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDL 1ez0A 31 :EVNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLET T0310 57 :LAAPLLKRLS 1ez0A 82 :LPEVRLTGEI T0310 70 :SKLNSLAIGLRQIAASSQD 1ez0A 92 :ARTANQLRLFADVVNSGSY T0310 91 :GRVLRRTRIAKNL 1ez0A 111 :HQAILDTPNPTRA T0310 104 :ELEQVTVPIGVLLVIFESRPDCLPQV 1ez0A 129 :DIRRQQIALGPVAVFGASNFPLAFSA T0310 130 :AALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVN 1ez0A 159 :TASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLL T0310 177 :TREEVELDKMIDLIIPRGSSQLVRDIQK 1ez0A 212 :LGQALVSHPEIKAVGFTGSVGGGRALFN T0310 205 :AAKGIPVMGHSEGICHMYVDSEA 1ez0A 244 :RPEPIPFYGELGAINPTFIFPSA T0310 230 :DKVTRLVRDSKCEYPAACNALETLLIHR 1ez0A 272 :DLADQFVASMTMGCGQFCTKPGVVFALN T0310 261 :RTPLFDQIIDMLRVEQV 1ez0A 300 :TPETQAFIETAQSLIRQ T0310 278 :KIHAGPKFASYL 1ez0A 347 :TFSQAESPCVAS T0310 290 :TFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTE 1ez0A 369 :RKHPAWEEEIFGPQSLIVVCENVADMLSLSEMLAGSLTATIHAT T0310 334 :DENTAEFFLQHVD 1ez0A 415 :DYPQVSQLIPRLE T0310 347 :SACVFWNASTRFSD 1ez0A 430 :AGRLVFNGWPTGVE T0310 361 :GYRFGLGAEVGIST 1ez0A 445 :GYAMVHGGPYPAST T0310 375 :SRIHARGPVGLEGLLTTKWL 1ez0A 460 :SASTSVGAEAIHRWLRPVAY T0310 403 :SDFSEHGSLKYLHENLPIPQ 1ez0A 480 :QALPESLLPDSLKAENPLEI Number of specific fragments extracted= 17 number of extra gaps= 0 total=313 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1uzbA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0310 read from 1uzbA/merged-good-all-a2m # 1uzbA read from 1uzbA/merged-good-all-a2m # found chain 1uzbA in training set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILL 1uzbA 76 :AEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEA T0310 50 :LEEAEGR 1uzbA 119 :TLVYEVG T0310 59 :APLLK 1uzbA 126 :KNWVE T0310 68 :STSKLNSLAIGLRQIAASSQDSVGRVLRRTR 1uzbA 131 :ASADVAEAIDFIEYYARAALRYRYPAVEVVP T0310 100 :AKNLELEQVTVPIGVLLVIFE 1uzbA 162 :YPGEDNESFYVPLGAGVVIAP T0310 121 :SRPDCL 1uzbA 184 :NFPVAI T0310 127 :PQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1uzbA 191 :TGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEA T0310 167 :GV 1uzbA 227 :GF T0310 169 :KEAVQLVNTR 1uzbA 230 :PGVVNFLPGV T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKAA 1uzbA 245 :AYLVEHPRIRFINFTGSLEVGLKIYEAA T0310 207 :KGIPVMGHSEGICHMYVDSEASVDKVT 1uzbA 281 :WFKRAYVETGGKNAIIVDETADFDLAA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRT 1uzbA 309 :GVVVSAYGFQGQKCSAASRLILTQGAYEP T0310 264 :LFDQIIDMLRVEQVKIHA 1uzbA 338 :VLERVLKRAERLSVGPAE T0310 282 :GPKFASYLTFV 1uzbA 357 :NPDLGPVVSAE T0310 293 :KSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFS 1uzbA 412 :RIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGA T0310 360 :DGYRFGLGAEVGIS 1uzbA 481 :GVQPFGGFKLSGTN T0310 381 :GPVGLEGLLTT 1uzbA 495 :AKTGALDYLRL Number of specific fragments extracted= 17 number of extra gaps= 0 total=330 Number of alignments=19 # 1uzbA read from 1uzbA/merged-good-all-a2m # found chain 1uzbA in training set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1uzbA 76 :AEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKN T0310 65 :LSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRT 1uzbA 128 :WVEASADVAEAIDFIEYYARAALRYRYPAVEVV T0310 99 :IAKNLELEQVTVPIGVLLVIFESRPDCLPQVAAL 1uzbA 161 :PYPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMI T0310 133 :AIASGNGLLLKGGKEAAHSNRILHLLTQEA 1uzbA 197 :PVAVGNTVIAKPAEDAVVVGAKVFEIFHEA T0310 167 :GV 1uzbA 227 :GF T0310 169 :KEAVQLVNT 1uzbA 230 :PGVVNFLPG T0310 178 :R 1uzbA 240 :G T0310 179 :EEVEL 1uzbA 242 :EVGAY T0310 184 :DKMIDLIIPRGSSQLVRDIQKAA 1uzbA 250 :HPRIRFINFTGSLEVGLKIYEAA T0310 207 :KGIPV 1uzbA 281 :WFKRA T0310 212 :MGHS 1uzbA 287 :VETG T0310 217 :GICHMYVDSEASVDKVT 1uzbA 291 :GKNAIIVDETADFDLAA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLR 1uzbA 309 :GVVVSAYGFQGQKCSAASRLILTQGAYE T0310 263 :PLFDQIIDMLRVEQVKIH 1uzbA 337 :PVLERVLKRAERLSVGPA T0310 281 :AGPKFASYLTF 1uzbA 356 :ENPDLGPVVSA T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWN 1uzbA 411 :ARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFN T0310 354 :ASTRFSDGYRFGLGAEVG 1uzbA 481 :GVQPFGGFKLSGTNAKTG T0310 372 :ISTSRIHARG 1uzbA 501 :DYLRLFLEMK Number of specific fragments extracted= 18 number of extra gaps= 0 total=348 Number of alignments=20 # 1uzbA read from 1uzbA/merged-good-all-a2m # found chain 1uzbA in training set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDL 1uzbA 76 :AEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEV T0310 62 :LKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVL 1uzbA 128 :WVEASADVAEAIDFIEYYARAALRYRYPAVEVV T0310 99 :IAKNLELEQVTVPIGVLLVIFESRPDCLPQV 1uzbA 161 :PYPGEDNESFYVPLGAGVVIAPWNFPVAIFT T0310 130 :AALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1uzbA 194 :IVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEA T0310 167 :GVKEAVQLVN 1uzbA 227 :GFPPGVVNFL T0310 177 :TREEVELDKMIDLIIPRGSSQLVRDIQK 1uzbA 243 :VGAYLVEHPRIRFINFTGSLEVGLKIYE T0310 205 :AAKGIPVMGHSEGICHMYVDSEASVDKVT 1uzbA 279 :QTWFKRAYVETGGKNAIIVDETADFDLAA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQV 1uzbA 309 :GVVVSAYGFQGQKCSAASRLILTQGAYEPVLERVLKRAERLSVG T0310 278 :KIHAGPKFASYLTFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIH 1uzbA 397 :YFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNAKT T0310 380 :RGPVGLEGLLTTKWL 1uzbA 498 :GALDYLRLFLEMKAV Number of specific fragments extracted= 10 number of extra gaps= 0 total=358 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qi6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1qi6A expands to /projects/compbio/data/pdb/1qi6.pdb.gz 1qi6A:# T0310 read from 1qi6A/merged-good-all-a2m # 1qi6A read from 1qi6A/merged-good-all-a2m # adding 1qi6A to template set # found chain 1qi6A in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILL 1qi6A 42 :VDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGA T0310 50 :LEEAEGR 1qi6A 85 :ILSKEVA T0310 57 :LAAPLLK 1qi6A 93 :GYKSAVS T0310 71 :KLNSLAIGLRQIAASSQDSVGRVLRRTRIAK 1qi6A 100 :EVVRTAEIINYAAEEGLRMEGEVLEGGSFEA T0310 102 :NLELEQVTVPIGVLLVIFE 1qi6A 134 :KKIAVVRREPVGLVLAISP T0310 121 :SRPDCL 1qi6A 154 :NYPVNL T0310 127 :PQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1qi6A 161 :GSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEA T0310 167 :GV 1qi6A 197 :GL T0310 169 :KEAVQLVNTR 1qi6A 200 :AGVFNTITGR T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEASVDKVT 1qi6A 215 :DYIVEHQAVNFINFTGSTGIGERIGKMAGMRPIMLELGGKDSAIVLEDADLELTA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRT 1qi6A 271 :NIIAGAFGYSGQRCTAVKRVLVMESVADE T0310 264 :LFDQIIDMLRVEQVKIHAGPK 1qi6A 300 :LVEKIREKVLALTIGNPEDDA T0310 285 :FASYLTFV 1qi6A 322 :ITPLIDTK T0310 293 :KSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFS 1qi6A 372 :RLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRG T0310 360 :DGYRFGLGAEVGISTSR 1qi6A 440 :DNFPFLGAKKSGAGIQG T0310 381 :GPVGLEGLLTTKWLLRGK 1qi6A 457 :VKYSIEAMTTVKSVVFDI Number of specific fragments extracted= 16 number of extra gaps= 0 total=374 Number of alignments=22 # 1qi6A read from 1qi6A/merged-good-all-a2m # found chain 1qi6A in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1qi6A 42 :VDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKG T0310 65 :LSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTR 1qi6A 94 :YKSAVSEVVRTAEIINYAAEEGLRMEGEVLEGGS T0310 99 :IAKNLELEQVTVPIGVLLVIFESRPDCLPQVAAL 1qi6A 131 :ASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKI T0310 133 :AIASGNGLLLKGGKEAAHSNRILHLLTQEA 1qi6A 167 :ALIAGNVIAFKPPTQGSISGLLLAEAFAEA T0310 167 :GV 1qi6A 197 :GL T0310 169 :KEAVQLVNT 1qi6A 200 :AGVFNTITG T0310 178 :R 1qi6A 210 :G T0310 179 :EEVEL 1qi6A 212 :EIGDY T0310 184 :DKMIDLIIPRGSSQLVRDIQKAAKGIPV 1qi6A 220 :HQAVNFINFTGSTGIGERIGKMAGMRPI T0310 212 :MGHS 1qi6A 249 :LELG T0310 217 :GICHMYVDSEASVDKVT 1qi6A 253 :GKDSAIVLEDADLELTA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLR 1qi6A 271 :NIIAGAFGYSGQRCTAVKRVLVMESVAD T0310 263 :PLFDQIIDMLRVEQVKIHAGPK 1qi6A 299 :ELVEKIREKVLALTIGNPEDDA T0310 285 :FASYLTF 1qi6A 322 :ITPLIDT T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWN 1qi6A 371 :MRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHIN T0310 354 :ASTRFSDGYRFGLGAEVG 1qi6A 440 :DNFPFLGAKKSGAGIQGV T0310 372 :ISTSRIHARGPVGLEG 1qi6A 459 :YSIEAMTTVKSVVFDI Number of specific fragments extracted= 17 number of extra gaps= 0 total=391 Number of alignments=23 # 1qi6A read from 1qi6A/merged-good-all-a2m # found chain 1qi6A in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAEG 1qi6A 42 :VDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYK T0310 61 :LLK 1qi6A 96 :SAV T0310 67 :LSTSKLNSLAIGLRQIAASSQ 1qi6A 99 :SEVVRTAEIINYAAEEGLRME T0310 91 :GRVLRRTRI 1qi6A 120 :GEVLEGGSF T0310 100 :AKNLELEQVTVPIGVLLVIFESRPDCLPQV 1qi6A 132 :SKKKIAVVRREPVGLVLAISPFNYPVNLAG T0310 130 :AALAIASGNGLLLKGGKEAAHSNRILHLLTQ 1qi6A 164 :IAPALIAGNVIAFKPPTQGSISGLLLAEAFA T0310 165 :IHGVKEAVQLVN 1qi6A 195 :EAGLPAGVFNTI T0310 177 :TREEVELDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEASVDKVT 1qi6A 213 :IGDYIVEHQAVNFINFTGSTGIGERIGKMAGMRPIMLELGGKDSAIVLEDADLELTA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQV 1qi6A 271 :NIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIG T0310 278 :KIHAGPKFASYLTFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTR 1qi6A 357 :NLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQ T0310 359 :SDGYRFGLGAEVGISTSRIH 1qi6A 437 :RGTDNFPFLGAKKSGAGIQG T0310 381 :GPVGLEGLLTTKWLLR 1qi6A 457 :VKYSIEAMTTVKSVVF Number of specific fragments extracted= 12 number of extra gaps= 0 total=403 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1t90A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0310/1t90A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0310/1t90A/merged-good-all-a2m.gz for input Trying 1t90A/merged-good-all-a2m Error: Couldn't open file 1t90A/merged-good-all-a2m or 1t90A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bi9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0310/1bi9A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0310/1bi9A/merged-good-all-a2m.gz for input Trying 1bi9A/merged-good-all-a2m Error: Couldn't open file 1bi9A/merged-good-all-a2m or 1bi9A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1o9jA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0310/1o9jA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0310/1o9jA/merged-good-all-a2m.gz for input Trying 1o9jA/merged-good-all-a2m Error: Couldn't open file 1o9jA/merged-good-all-a2m or 1o9jA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1o20A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1o20A expands to /projects/compbio/data/pdb/1o20.pdb.gz 1o20A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 979, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 981, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 983, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 985, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 987, because occupancy 0.350 <= existing 0.650 in 1o20A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2477, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 2479, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 2553, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 2555, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 2557, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 2559, because occupancy 0.350 <= existing 0.650 in 1o20A Skipped atom 2561, because occupancy 0.350 <= existing 0.650 in 1o20A # T0310 read from 1o20A/merged-good-all-a2m # 1o20A read from 1o20A/merged-good-all-a2m # adding 1o20A to template set # found chain 1o20A in template set Warning: unaligning (T0310)E120 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o20A)S123 Warning: unaligning (T0310)S121 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o20A)S123 Warning: unaligning (T0310)A206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o20A)T216 Warning: unaligning (T0310)K207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o20A)T216 Warning: unaligning (T0310)A246 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o20A)C255 Warning: unaligning (T0310)C247 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o20A)C255 T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLE 1o20A 4 :LLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVE T0310 52 :EAEGRLAAPLLKRLSLSTSKLNSLAIGLRQIAA 1o20A 55 :ARERGVKESLVDRLALNDKRIDEMIKACETVIG T0310 86 :SQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIF 1o20A 88 :LKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIY T0310 122 :RPDCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGV 1o20A 124 :RPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSAIREALKETEI T0310 169 :KEAVQLVNTR 1o20A 172 :ESSVEFIENT T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKA 1o20A 188 :EMIRLREYLSLVIPRGGYGLISFVRDN T0310 209 :IPVMGHSEGICHMYVDSEASVDKVTRLVRDSKCEYPA 1o20A 217 :VPVLETGVGNCHIFVDESADLKKAVPVIINAKTQRPG T0310 248 :NALETLLIHRDLLRT 1o20A 256 :NAAEKLLVHEKIAKE T0310 264 :LFDQIIDMLRVEQVKIHAG 1o20A 271 :FLPVIVEELRKHGVEVRGC T0310 283 :PKFASY 1o20A 297 :PDVVPA T0310 291 :FVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVV 1o20A 303 :TEDDWPTEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELTTYKFVVLGEYHVR Number of specific fragments extracted= 11 number of extra gaps= 3 total=414 Number of alignments=25 # 1o20A read from 1o20A/merged-good-all-a2m # found chain 1o20A in template set Warning: unaligning (T0310)E120 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o20A)S123 Warning: unaligning (T0310)S121 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o20A)S123 Warning: unaligning (T0310)A206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o20A)T216 Warning: unaligning (T0310)K207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o20A)T216 Warning: unaligning (T0310)A246 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o20A)C255 Warning: unaligning (T0310)C247 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o20A)C255 T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAE 1o20A 4 :LLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKAR T0310 55 :GRLAAPLLKRLSLSTSKLNSLAIGLRQIAAS 1o20A 58 :RGVKESLVDRLALNDKRIDEMIKACETVIGL T0310 87 :QDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIF 1o20A 89 :KDPVGEVIDSWVREDGLRIARVRVPIGPIGIIY T0310 122 :RPDCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGV 1o20A 124 :RPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSAIREALKETEI T0310 169 :KEAVQLVNT 1o20A 172 :ESSVEFIEN T0310 178 :R 1o20A 182 :D T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKA 1o20A 188 :EMIRLREYLSLVIPRGGYGLISFVRDN T0310 209 :IPVMGHSEGICHMYVDSEASVDKVTRLVRDSKCEYPA 1o20A 217 :VPVLETGVGNCHIFVDESADLKKAVPVIINAKTQRPG T0310 248 :NALETLLIHRDLLR 1o20A 256 :NAAEKLLVHEKIAK T0310 263 :PLFDQIIDMLRVEQVKIHAGPKFASYLTF 1o20A 270 :EFLPVIVEELRKHGVEVRGCEKTREIVPD T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVV 1o20A 304 :EDDWPTEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELTTYKFVVLGEYHVR Number of specific fragments extracted= 11 number of extra gaps= 3 total=425 Number of alignments=26 # 1o20A read from 1o20A/merged-good-all-a2m # found chain 1o20A in template set Warning: unaligning (T0310)E120 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o20A)S123 Warning: unaligning (T0310)S121 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o20A)S123 Warning: unaligning (T0310)K207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o20A)T216 Warning: unaligning (T0310)G208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o20A)T216 Warning: unaligning (T0310)A246 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o20A)C255 Warning: unaligning (T0310)C247 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o20A)C255 T0310 1 :TVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAEGRLAAPLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIF 1o20A 3 :ELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIKACETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIY T0310 122 :RPDCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVN 1o20A 124 :RPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSAIREALKETEIPESSVEFI T0310 177 :TREEVELDKMIDLIIPRGSSQLVRDIQK 1o20A 186 :VLEMIRLREYLSLVIPRGGYGLISFVRD T0310 206 :A 1o20A 214 :N T0310 209 :IPVMGHSEGICHMYVDSEASVDKVTRLVRDSKCEYPA 1o20A 217 :VPVLETGVGNCHIFVDESADLKKAVPVIINAKTQRPG T0310 248 :NALETLLIHRDLLRTPLFDQIIDMLRVEQV 1o20A 256 :NAAEKLLVHEKIAKEFLPVIVEELRKHGVE T0310 286 :ASYLTFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDH 1o20A 298 :DVVPATEDDWPTEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELTTYKFVVLGEYH Number of specific fragments extracted= 7 number of extra gaps= 3 total=432 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1o02A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0310/1o02A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0310/1o02A/merged-good-all-a2m.gz for input Trying 1o02A/merged-good-all-a2m Error: Couldn't open file 1o02A/merged-good-all-a2m or 1o02A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ad3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ad3A expands to /projects/compbio/data/pdb/1ad3.pdb.gz 1ad3A:# T0310 read from 1ad3A/merged-good-all-a2m # 1ad3A read from 1ad3A/merged-good-all-a2m # adding 1ad3A to template set # found chain 1ad3A in template set Warning: unaligning (T0310)K412 because last residue in template chain is (1ad3A)A447 T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDL 1ad3A 3 :ISDTVKRAREAFNSGKTRSLQFRIQQLEALQRMINENLKSISGALASDL T0310 56 :RLAAPLLK 1ad3A 52 :GKNEWTSY T0310 69 :TSKLNSLAIGLRQIAASSQDSVG 1ad3A 60 :YEEVAHVLEELDTTIKELPDWAE T0310 92 :RVLRRTRIAKNLELEQVTVPIGVLLVIFE 1ad3A 84 :EPVAKTRQTQQDDLYIHSEPLGVVLVIGA T0310 121 :SRPDCL 1ad3A 114 :NYPFNL T0310 127 :PQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1ad3A 121 :IQPMVGAVAAGNAVILKPSEVSGHMADLLATLIPQY T0310 168 :V 1ad3A 157 :M T0310 169 :KEAVQLVNTR 1ad3A 159 :QNLYLVVKGG T0310 179 :EEVELD 1ad3A 173 :TELLKE T0310 186 :MIDLIIPRGSSQLVRDIQKAA 1ad3A 179 :RFDHIMYTGSTAVGKIVMAAA T0310 207 :KGIPVMGHSEGICHMYVDSEASVDKVT 1ad3A 202 :HLTPVTLELGGKSPCYVDKDCDLDVAC T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRT 1ad3A 230 :RIAWGKFMNSGQTCVAPDYILCDPSIQNQ T0310 264 :LFDQIIDMLRVEQVKIHA 1ad3A 259 :IVEKLKKSLKDFYGEDAK T0310 282 :GPKFASYLTFV 1ad3A 278 :SRDYGRIINDR T0310 293 :KSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFS 1ad3A 328 :PVMQEEIFGPVMPIVCVRSLEEAIQFINQREKPLALYVFSNNEKVIKKMIAETSSGGVTANDVIVHI T0310 360 :DGYRFGLGAEVGISTSR 1ad3A 397 :PTLPFGGVGNSGMGAYH T0310 381 :GPVGLEGLLTTKWLLRGKDHVVS 1ad3A 414 :GKKSFETFSHRRSCLVKSLLNEE T0310 404 :DFSEHGSL 1ad3A 439 :KARYPPSP Number of specific fragments extracted= 18 number of extra gaps= 0 total=450 Number of alignments=28 # 1ad3A read from 1ad3A/merged-good-all-a2m # found chain 1ad3A in template set T0310 1 :TVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1ad3A 2 :SISDTVKRAREAFNSGKTRSLQFRIQQLEALQRMINENLKSISGALASDLGKN T0310 65 :LSLSTSK 1ad3A 55 :EWTSYYE T0310 72 :LNSLAIGLRQIAASSQDSVGRVLRRTR 1ad3A 63 :VAHVLEELDTTIKELPDWAEDEPVAKT T0310 99 :IAKNLELEQVTVPIGVLLVIFESRPDCLPQVAAL 1ad3A 91 :QTQQDDLYIHSEPLGVVLVIGAWNYPFNLTIQPM T0310 133 :AIASGNGLLLKGGKEAAHSNRILHLLTQEA 1ad3A 127 :AVAAGNAVILKPSEVSGHMADLLATLIPQY T0310 168 :V 1ad3A 157 :M T0310 169 :KEAVQLVNTR 1ad3A 159 :QNLYLVVKGG T0310 179 :EEVEL 1ad3A 171 :ETTEL T0310 184 :DKMIDLIIPRGSSQLVRDIQKAA 1ad3A 177 :KERFDHIMYTGSTAVGKIVMAAA T0310 207 :KGIPV 1ad3A 202 :HLTPV T0310 212 :MGHS 1ad3A 208 :LELG T0310 217 :GICHMYVDSEASVDKVT 1ad3A 212 :GKSPCYVDKDCDLDVAC T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLR 1ad3A 230 :RIAWGKFMNSGQTCVAPDYILCDPSIQN T0310 263 :PLFDQIIDMLRVEQVKIH 1ad3A 258 :QIVEKLKKSLKDFYGEDA T0310 281 :AGPKFASYLTF 1ad3A 277 :QSRDYGRIIND T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWN 1ad3A 327 :SPVMQEEIFGPVMPIVCVRSLEEAIQFINQREKPLALYVFSNNEKVIKKMIAETSSGGVTAN T0310 354 :ASTRFSDGYRFGLGAEVG 1ad3A 397 :PTLPFGGVGNSGMGAYHG T0310 372 :ISTSRIHARGPVGLEGLLTTK 1ad3A 416 :KSFETFSHRRSCLVKSLLNEE T0310 403 :SDFSEHGSL 1ad3A 437 :AHKARYPPS Number of specific fragments extracted= 19 number of extra gaps= 0 total=469 Number of alignments=29 # 1ad3A read from 1ad3A/merged-good-all-a2m # found chain 1ad3A in template set Warning: unaligning (T0310)Q422 because last residue in template chain is (1ad3A)A447 T0310 1 :TVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAEGRLAAPLLKRLSLSTSKLNSLAIGLRQ 1ad3A 2 :SISDTVKRAREAFNSGKTRSLQFRIQQLEALQRMINENLKSISGALASDLGKNEWTSYYEEVAHVLEELDTTIKELPDWAE T0310 91 :GRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQV 1ad3A 83 :DEPVAKTRQTQQDDLYIHSEPLGVVLVIGAWNYPFNLTI T0310 130 :AALAIASGNGLLLKGGKEAAHSNRILHLLTQEAL 1ad3A 124 :MVGAVAAGNAVILKPSEVSGHMADLLATLIPQYM T0310 165 :IHGVKEAVQLVN 1ad3A 158 :DQNLYLVVKGGV T0310 177 :TREE 1ad3A 172 :TTEL T0310 183 :LDKMIDLIIPRGSSQLVRDIQK 1ad3A 176 :LKERFDHIMYTGSTAVGKIVMA T0310 205 :AAKGIPVMGHSEGICHMYVDSEASVDKVT 1ad3A 200 :AKHLTPVTLELGGKSPCYVDKDCDLDVAC T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQV 1ad3A 230 :RIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKDFYGE T0310 278 :KIHAGPKFASYLTFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIH 1ad3A 313 :RYIAPTILVDVDPQSPVMQEEIFGPVMPIVCVRSLEEAIQFINQREKPLALYVFSNNEKVIKKMIAETSSGGVTANDVIVHITVPTLPFGGVGNSGMGAYH T0310 381 :GPVGLEGLLTTKWLLRG 1ad3A 414 :GKKSFETFSHRRSCLVK T0310 406 :SEHGSLKYLHENLPIP 1ad3A 431 :SLLNEEAHKARYPPSP Number of specific fragments extracted= 11 number of extra gaps= 0 total=480 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2esdA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0310/2esdA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0310/2esdA/merged-good-all-a2m.gz for input Trying 2esdA/merged-good-all-a2m Error: Couldn't open file 2esdA/merged-good-all-a2m or 2esdA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1uxtA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1uxtA expands to /projects/compbio/data/pdb/1uxt.pdb.gz 1uxtA:# T0310 read from 1uxtA/merged-good-all-a2m # 1uxtA read from 1uxtA/merged-good-all-a2m # adding 1uxtA to template set # found chain 1uxtA in template set Warning: unaligning (T0310)G217 because of BadResidue code BAD_PEPTIDE in next template residue (1uxtA)G267 Warning: unaligning (T0310)I218 because of BadResidue code BAD_PEPTIDE at template residue (1uxtA)G267 T0310 2 :VEQQGEMARS 1uxtA 56 :VERTLDVLFK T0310 12 :GGRMLATLEPEQRAEIIHHLADLLTDQRDEILL 1uxtA 67 :GRWSARDMPGTERLAVLRKAADIIERNLDVFAE T0310 50 :LEEAEGRLAAPLLK 1uxtA 100 :VLVMNAGKPKSAAV T0310 74 :SLAIGLRQIAASSQ 1uxtA 114 :GEVKAAVDRLRLAE T0310 88 :DSVGRVLRRTRIAK 1uxtA 132 :KIGGDYIPGDWTYD T0310 102 :NLELEQVTVPIGVLLVIFE 1uxtA 148 :ETEGLVRREPLGVVAAITP T0310 121 :SRPDCL 1uxtA 168 :NYPLFD T0310 127 :PQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1uxtA 175 :VNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDA T0310 167 :GV 1uxtA 211 :GF T0310 169 :KEAVQLVNTR 1uxtA 214 :PDAIALLNLP T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSE 1uxtA 228 :EKIVADDRVAAVSFTGSTEVGERVVKVGGVKQYVMELG T0310 219 :CHMYVDSEASVDKVT 1uxtA 268 :DPAIVLEDADLDLAA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRT 1uxtA 284 :KIARGIYSYAGQRCDAIKLVLAERPVYGK T0310 264 :LFDQIIDMLRVEQVKIHAGPK 1uxtA 313 :LVEEVAKRLSSLRVGDPRDPT T0310 285 :FASYLTFV 1uxtA 336 :VGPLISPS T0310 293 :KSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSD 1uxtA 390 :VLYKREVFAPVALAVEVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGI T0310 361 :GYRFGLGAEVGISTSRI 1uxtA 459 :YYPFGGRKKSGVFREGI T0310 382 :PVGLEGLLTTKWLLRGKDHVV 1uxtA 476 :GYAVEAVTAYKTIVFNYKGKG Number of specific fragments extracted= 18 number of extra gaps= 1 total=498 Number of alignments=31 # 1uxtA read from 1uxtA/merged-good-all-a2m # found chain 1uxtA in template set Warning: unaligning (T0310)G217 because of BadResidue code BAD_PEPTIDE in next template residue (1uxtA)G267 Warning: unaligning (T0310)I218 because of BadResidue code BAD_PEPTIDE at template residue (1uxtA)G267 T0310 2 :VEQQGEMARS 1uxtA 56 :VERTLDVLFK T0310 12 :GGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1uxtA 67 :GRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKP T0310 65 :LSLSTSKLNSLAIGLRQ 1uxtA 109 :KSAAVGEVKAAVDRLRL T0310 86 :SQD 1uxtA 126 :AEL T0310 89 :SVGRVLRRTRIAK 1uxtA 133 :IGGDYIPGDWTYD T0310 102 :NLELEQVTVPIGVLLVIFESRPDCLPQVAAL 1uxtA 148 :ETEGLVRREPLGVVAAITPFNYPLFDAVNKI T0310 133 :AIASGNGLLLKGGKEAAHSNRILHLLTQEA 1uxtA 181 :SFIYGNAVVVKPSISDPLPAAMAVKALLDA T0310 167 :GV 1uxtA 211 :GF T0310 169 :KEAVQLVNTR 1uxtA 214 :PDAIALLNLP T0310 179 :EEVEL 1uxtA 225 :KEAEK T0310 184 :DKMIDLIIPRGSSQLVRDIQKAAKGIPV 1uxtA 233 :DDRVAAVSFTGSTEVGERVVKVGGVKQY T0310 212 :MGHS 1uxtA 262 :MELG T0310 219 :CHMYVDSEASVDKVT 1uxtA 268 :DPAIVLEDADLDLAA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLR 1uxtA 284 :KIARGIYSYAGQRCDAIKLVLAERPVYG T0310 263 :PLFDQIIDMLRVEQVKIHAGPK 1uxtA 312 :KLVEEVAKRLSSLRVGDPRDPT T0310 285 :FASYLTF 1uxtA 336 :VGPLISP T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWN 1uxtA 389 :MVLYKREVFAPVALAVEVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYIN T0310 354 :ASTRFSDGYRFGLGAEVG 1uxtA 458 :GYYPFGGRKKSGVFREGI T0310 372 :ISTSRIHARGPVGLEGL 1uxtA 477 :YAVEAVTAYKTIVFNYK T0310 397 :GKD 1uxtA 494 :GKG Number of specific fragments extracted= 20 number of extra gaps= 1 total=518 Number of alignments=32 # 1uxtA read from 1uxtA/merged-good-all-a2m # found chain 1uxtA in template set Warning: unaligning (T0310)G217 because of BadResidue code BAD_PEPTIDE in next template residue (1uxtA)G267 Warning: unaligning (T0310)I218 because of BadResidue code BAD_PEPTIDE at template residue (1uxtA)G267 T0310 2 :VEQQGEMARS 1uxtA 56 :VERTLDVLFK T0310 12 :GGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1uxtA 67 :GRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKP T0310 69 :TSKLNSLAIGLRQIAASSQ 1uxtA 109 :KSAAVGEVKAAVDRLRLAE T0310 88 :DSVGR 1uxtA 131 :KKIGG T0310 95 :RRTRIAKN 1uxtA 136 :DYIPGDWT T0310 103 :LELEQVTVPIGVLLVIFESRPDCLPQV 1uxtA 149 :TEGLVRREPLGVVAAITPFNYPLFDAV T0310 130 :AALAIASGNGLLLKGGKEAAHSNRILHLLTQ 1uxtA 178 :ITYSFIYGNAVVVKPSISDPLPAAMAVKALL T0310 165 :IHGVKEAVQLVN 1uxtA 209 :DAGFPPDAIALL T0310 177 :TREEVELDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSE 1uxtA 226 :EAEKIVADDRVAAVSFTGSTEVGERVVKVGGVKQYVMELG T0310 219 :CHMYVDSEASVDKVT 1uxtA 268 :DPAIVLEDADLDLAA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQV 1uxtA 284 :KIARGIYSYAGQRCDAIKLVLAERPVYGKLVEEVAKRLSSLRVG T0310 278 :KIHAGPKFASYL 1uxtA 367 :RRLGPTYVQPTF T0310 290 :TFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTR 1uxtA 387 :KDMVLYKREVFAPVALAVEVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPR T0310 359 :SDGYRFGLGAEVGISTSRIH 1uxtA 455 :HGIGYYPFGGRKKSGVFREG T0310 381 :GPVGLEGLLTTKWLLR 1uxtA 475 :IGYAVEAVTAYKTIVF T0310 404 :DFSEHGS 1uxtA 491 :NYKGKGV Number of specific fragments extracted= 16 number of extra gaps= 1 total=534 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1o04A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0310 read from 1o04A/merged-good-all-a2m # 1o04A read from 1o04A/merged-good-all-a2m # found chain 1o04A in training set Warning: unaligning (T0310)R92 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o04A)T143 Warning: unaligning (T0310)V93 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o04A)T143 Warning: unaligning (T0310)L94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o04A)I144 Warning: unaligning (T0310)L366 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o04A)Y468 Warning: unaligning (T0310)G367 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o04A)Y468 T0310 2 :VEQQGEMARSGGR 1o04A 59 :VDKAVKAARAAFQ T0310 15 :MLATLEPEQRAEIIHHLADLLTDQRDEILL 1o04A 75 :PWRRMDASHRGRLLNRLADLIERDRTYLAA T0310 50 :LEEAEGR 1o04A 105 :LETLDNG T0310 59 :APLLKR 1o04A 112 :KPYVIS T0310 68 :STSKLNSLAIGLRQIAASSQDSVG 1o04A 118 :YLVDLDMVLKCLRYYAGWADKYHG T0310 95 :RR 1o04A 145 :PI T0310 100 :AKNLELEQVTVPIGVLLVIFE 1o04A 147 :DGDFFSYTRHEPVGVCGQIIP T0310 121 :SRP 1o04A 169 :NFP T0310 124 :DCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1o04A 173 :LMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEA T0310 167 :GV 1o04A 212 :GF T0310 169 :KEAVQLVNTR 1o04A 215 :PGVVNIVPGF T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKAA 1o04A 230 :AAIASHEDVDKVAFTGSTEIGRVIQVAA T0310 207 :KGIPVMGHSEGICHMYVDSEASVDKVT 1o04A 261 :NLKRVTLELGGKSPNIIMSDADMDWAV T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRT 1o04A 289 :QAHFALFFNQGQCSCAGSRTFVQEDIYDE T0310 264 :LFDQIIDMLRVEQVKIHAGPK 1o04A 318 :FVERSVARAKSRVVGNPFDSK T0310 285 :FASYLTFV 1o04A 341 :QGPQVDET T0310 293 :KSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFG 1o04A 394 :TIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFG T0310 368 :AEVGISTSR 1o04A 469 :KMSGSGREL T0310 381 :GPVGLEGLLTTKWLLRGKDHV 1o04A 478 :GEYGLQAYTEVKTVTVKVPQK Number of specific fragments extracted= 19 number of extra gaps= 2 total=553 Number of alignments=34 # 1o04A read from 1o04A/merged-good-all-a2m # found chain 1o04A in training set Warning: unaligning (T0310)R92 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o04A)T143 Warning: unaligning (T0310)V93 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o04A)T143 Warning: unaligning (T0310)L94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o04A)I144 Warning: unaligning (T0310)D360 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o04A)Y468 Warning: unaligning (T0310)G361 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o04A)Y468 T0310 2 :VEQQGEMARSGGR 1o04A 59 :VDKAVKAARAAFQ T0310 15 :MLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1o04A 75 :PWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKP T0310 65 :LSLST 1o04A 114 :YVISY T0310 70 :SKLNSLAIGLRQIAASSQDSVG 1o04A 120 :VDLDMVLKCLRYYAGWADKYHG T0310 95 :RR 1o04A 145 :PI T0310 100 :AKNLELEQVTVPIGVLLVIFESRPDCLPQVAAL 1o04A 147 :DGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKL T0310 133 :AIASGNGLLLKGGKEAAHSNRILHLLTQEA 1o04A 182 :ALATGNVVVMKVAEQTPLTALYVANLIKEA T0310 167 :GV 1o04A 212 :GF T0310 169 :KEAVQLVNT 1o04A 215 :PGVVNIVPG T0310 178 :R 1o04A 225 :G T0310 179 :EEVEL 1o04A 227 :TAGAA T0310 184 :DKMIDLIIPRGSSQLVRDIQKAA 1o04A 235 :HEDVDKVAFTGSTEIGRVIQVAA T0310 207 :KGIPV 1o04A 261 :NLKRV T0310 212 :MGHS 1o04A 267 :LELG T0310 217 :GICHMYVDSEASVDKVT 1o04A 271 :GKSPNIIMSDADMDWAV T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLR 1o04A 289 :QAHFALFFNQGQCSCAGSRTFVQEDIYD T0310 263 :PLFDQIIDMLRVEQVKIHAGPK 1o04A 317 :EFVERSVARAKSRVVGNPFDSK T0310 285 :FASYLTF 1o04A 341 :QGPQVDE T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWN 1o04A 393 :MTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVN T0310 354 :ASTRFS 1o04A 461 :AQSPFG T0310 362 :YRFGLGAEVG 1o04A 469 :KMSGSGRELG T0310 372 :ISTSRIHARGPVGLEGLLT 1o04A 480 :YGLQAYTEVKTVTVKVPQK Number of specific fragments extracted= 22 number of extra gaps= 2 total=575 Number of alignments=35 # 1o04A read from 1o04A/merged-good-all-a2m # found chain 1o04A in training set Warning: unaligning (T0310)R95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o04A)T143 Warning: unaligning (T0310)R96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o04A)T143 Warning: unaligning (T0310)T97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o04A)I144 Warning: unaligning (T0310)A368 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o04A)Y468 Warning: unaligning (T0310)E369 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o04A)Y468 T0310 2 :VEQQGEMARSGGR 1o04A 59 :VDKAVKAARAAFQ T0310 15 :MLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1o04A 75 :PWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKP T0310 59 :APL 1o04A 114 :YVI T0310 68 :STSKLNSLAIGLRQIAASSQD 1o04A 117 :SYLVDLDMVLKCLRYYAGWAD T0310 91 :GRVL 1o04A 138 :KYHG T0310 98 :RIAKNLELEQVTVPIGVLLVIFESRPDCLPQV 1o04A 145 :PIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQA T0310 130 :AALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1o04A 179 :LGPALATGNVVVMKVAEQTPLTALYVANLIKEA T0310 167 :GVKEAVQLVN 1o04A 212 :GFPPGVVNIV T0310 177 :TREEVELDKMIDLIIPRGSSQLVRDIQK 1o04A 228 :AGAAIASHEDVDKVAFTGSTEIGRVIQV T0310 205 :AAKGIPVMGHSEGICHMYVDSEASVDKVTRLVRDSKC 1o04A 259 :SSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALF T0310 242 :EYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQV 1o04A 297 :NQGQCSCAGSRTFVQEDIYDEFVERSVARAKSRVVG T0310 278 :KIHAGPKFASYLTFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTR 1o04A 379 :YFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDV T0310 360 :DGYRFGLG 1o04A 459 :FGAQSPFG T0310 370 :VGISTSRIH 1o04A 469 :KMSGSGREL T0310 381 :GPVGLEGLLTTKWLLRGK 1o04A 478 :GEYGLQAYTEVKTVTVKV Number of specific fragments extracted= 15 number of extra gaps= 2 total=590 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2d4eA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0310/2d4eA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0310/2d4eA/merged-good-all-a2m.gz for input Trying 2d4eA/merged-good-all-a2m Error: Couldn't open file 2d4eA/merged-good-all-a2m or 2d4eA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wndA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wndA expands to /projects/compbio/data/pdb/1wnd.pdb.gz 1wndA:# T0310 read from 1wndA/merged-good-all-a2m # 1wndA read from 1wndA/merged-good-all-a2m # adding 1wndA to template set # found chain 1wndA in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILL 1wndA 41 :VDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAE T0310 50 :LEEAEGR 1wndA 84 :LESRNCG T0310 59 :APLLKR 1wndA 91 :KPLHSA T0310 68 :STSKLNSLAIGLRQIAASSQDSVGRVLRRT 1wndA 97 :FNDEIPAIVDVFRFFAGAARCLNGLAAGEY T0310 100 :AKNLELEQVTVPIGVLLVIFE 1wndA 127 :LEGHTSMIRRDPLGVVASIAP T0310 121 :SRP 1wndA 149 :NYP T0310 124 :DCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLT 1wndA 153 :MMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELA T0310 166 :HGV 1wndA 190 :DIF T0310 169 :KEAVQLVNTR 1wndA 194 :AGVVNILFGR T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKAA 1wndA 209 :DPLTGHPKVRMVSLTGSIATGEHIISHT T0310 207 :KGIPVMGHSEGICHMYVDSEASVDKVTRLVRDS 1wndA 239 :SIKRTHMELGGKAPVIVFDDADIEAVVEGVRTF T0310 240 :KCEYPAACNALETLLIHRDLLRT 1wndA 273 :YYNAGQDCTAACRIYAQKGIYDT T0310 264 :LFDQIIDMLRVEQVKIHAGPK 1wndA 296 :LVEKLGAAVATLKSGAPDDES T0310 285 :FASYLTFV 1wndA 319 :LGPLSSLA T0310 293 :KSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSR 1wndA 373 :AIVQKEVFGPVVSVTPFDNEEQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDM T0310 381 :GPVGLEGLLTTKWLLRG 1wndA 457 :SLYGLEDYTVVRHVMVK Number of specific fragments extracted= 16 number of extra gaps= 0 total=606 Number of alignments=37 # 1wndA read from 1wndA/merged-good-all-a2m # found chain 1wndA in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1wndA 41 :VDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKP T0310 65 :LSLSTSK 1wndA 93 :LHSAFND T0310 72 :LNSLAIGLRQIAASSQDSVGRVLRR 1wndA 101 :IPAIVDVFRFFAGAARCLNGLAAGE T0310 99 :IAKNLELEQVTVPIGVLLVIFESRPDCLPQVAAL 1wndA 126 :YLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKL T0310 133 :AIASGNGLLLKGGKEAAHSNRILHLLT 1wndA 162 :ALAAGNCVVLKPSEITPLTALKLAELA T0310 167 :GV 1wndA 190 :DI T0310 169 :KEAVQLVNT 1wndA 194 :AGVVNILFG T0310 178 :R 1wndA 204 :G T0310 179 :EEVEL 1wndA 206 :TVGDP T0310 184 :DKMIDLIIPRGSSQLVRDIQKAA 1wndA 214 :HPKVRMVSLTGSIATGEHIISHT T0310 207 :KGIPV 1wndA 239 :SIKRT T0310 212 :MGHS 1wndA 245 :MELG T0310 217 :GICHMYVDSEASVDKVT 1wndA 249 :GKAPVIVFDDADIEAVV T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLR 1wndA 267 :GVRTFGYYNAGQDCTAACRIYAQKGIYD T0310 263 :PLFDQIIDMLRVEQVKIHAGPK 1wndA 295 :TLVEKLGAAVATLKSGAPDDES T0310 285 :FASYLTF 1wndA 319 :LGPLSSL T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWN 1wndA 372 :DAIVQKEVFGPVVSVTPFDNEEQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVN T0310 354 :ASTRFSDGYRFGLGAEVG 1wndA 440 :SEMPHGGQKLSGYGKDMS T0310 372 :ISTSRIHARGPVGLE 1wndA 459 :YGLEDYTVVRHVMVK Number of specific fragments extracted= 19 number of extra gaps= 0 total=625 Number of alignments=38 # 1wndA read from 1wndA/merged-good-all-a2m # found chain 1wndA in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAEGRLAAP 1wndA 41 :VDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFND T0310 72 :LNSLAIGLRQIAASSQDSVG 1wndA 100 :EIPAIVDVFRFFAGAARCLN T0310 93 :VLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQV 1wndA 120 :GLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAA T0310 130 :AALAIASGNGLLLKGGKEAAHSNRILHLLT 1wndA 159 :LAPALAAGNCVVLKPSEITPLTALKLAELA T0310 165 :IHGVKEAVQLVN 1wndA 189 :KDIFPAGVVNIL T0310 177 :TREEVELDKMIDLIIPRGSSQLVRDIQK 1wndA 207 :VGDPLTGHPKVRMVSLTGSIATGEHIIS T0310 205 :AAKGIPVMGHSEGICHMYVDSEASVDKVTRLVRD 1wndA 237 :ASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRT T0310 239 :SKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQV 1wndA 272 :GYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSG T0310 278 :KIHAGPKFASYLTFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTR 1wndA 358 :YYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFM T0310 360 :DGYRFGLGAEVGISTSRIH 1wndA 438 :LVSEMPHGGQKLSGYGKDM T0310 381 :GPVGLEGLLTTKWLLR 1wndA 457 :SLYGLEDYTVVRHVMV Number of specific fragments extracted= 11 number of extra gaps= 0 total=636 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1uxvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0310/1uxvA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0310/1uxvA/merged-good-all-a2m.gz for input Trying 1uxvA/merged-good-all-a2m Error: Couldn't open file 1uxvA/merged-good-all-a2m or 1uxvA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bpwA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bpwA expands to /projects/compbio/data/pdb/1bpw.pdb.gz 1bpwA:# T0310 read from 1bpwA/merged-good-all-a2m # 1bpwA read from 1bpwA/merged-good-all-a2m # adding 1bpwA to template set # found chain 1bpwA in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILL 1bpwA 60 :VDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAK T0310 50 :LEEAEGR 1bpwA 103 :LEVINNG T0310 59 :APLLK 1bpwA 110 :KTITE T0310 68 :STSKLNSLAIGLRQIAASSQDSVGRVLRR 1bpwA 115 :AEYDIDAAWQCIEYYAGLAPTLSGQHIQL T0310 100 :AKNLELEQVTVPIGVLLVIFE 1bpwA 144 :PGGAFAYTRREPLGVCAGILA T0310 121 :SRPDCL 1bpwA 166 :NYPFMI T0310 127 :PQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1bpwA 173 :AWKCAPALACGNAVVFKPSPMTPVTGVILAEIFHEA T0310 167 :GV 1bpwA 209 :GV T0310 169 :KEAVQLVNTR 1bpwA 212 :VGLVNVVQGG T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKAA 1bpwA 226 :SLLCHHPNVAKVSFTGSVPTGKKVMEMS T0310 207 :KGIPVMGHSEGICHMYVDSEASVDKVTRLVRDS 1bpwA 256 :TVKHVTLELGGKSPLLIFKDCELENAVRGALMA T0310 240 :KCEYPAACNALETLLIHRDLLRT 1bpwA 290 :FLTQGQVCTNGTRVFVQREIMPQ T0310 264 :LFDQIIDMLRVEQVKIHAGPK 1bpwA 313 :FLEEVVKRTKAIVVGDPLLTE T0310 285 :FASYLTFV 1bpwA 336 :MGGLISKP T0310 293 :KSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSR 1bpwA 395 :TCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFGREN T0310 381 :GPVGLEGLLTTKWLLRGKDHVVS 1bpwA 479 :GQATVDYYSQLKTVIVEMGDVDS Number of specific fragments extracted= 16 number of extra gaps= 0 total=652 Number of alignments=40 # 1bpwA read from 1bpwA/merged-good-all-a2m # found chain 1bpwA in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1bpwA 60 :VDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKT T0310 65 :LSLSTSKLNSLAIGLRQIAASSQDSVGRVLRR 1bpwA 112 :ITEAEYDIDAAWQCIEYYAGLAPTLSGQHIQL T0310 100 :AKNLELEQVTVPIGVLLVIFESRPDCLPQVAAL 1bpwA 144 :PGGAFAYTRREPLGVCAGILAWNYPFMIAAWKC T0310 133 :AIASGNGLLLKGGKEAAHSNRILHLLTQEA 1bpwA 179 :ALACGNAVVFKPSPMTPVTGVILAEIFHEA T0310 167 :GV 1bpwA 209 :GV T0310 169 :KEAVQLVNTR 1bpwA 212 :VGLVNVVQGG T0310 179 :EEVEL 1bpwA 223 :ETGSL T0310 184 :DKMIDLIIPRGSSQLVRDIQKAA 1bpwA 231 :HPNVAKVSFTGSVPTGKKVMEMS T0310 207 :KGIPV 1bpwA 256 :TVKHV T0310 212 :MGHS 1bpwA 262 :LELG T0310 217 :GICHMYVDSEASVDKVT 1bpwA 266 :GKSPLLIFKDCELENAV T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLR 1bpwA 284 :GALMANFLTQGQVCTNGTRVFVQREIMP T0310 263 :PLFDQIIDMLRVEQVKIHAGPK 1bpwA 312 :QFLEEVVKRTKAIVVGDPLLTE T0310 285 :FASYLTF 1bpwA 336 :MGGLISK T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWN 1bpwA 394 :MTCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYIN T0310 354 :ASTRFSDGYRFGLGAEVG 1bpwA 462 :VEVPFGGYKMSGFGRENG T0310 372 :ISTSRI 1bpwA 481 :ATVDYY T0310 389 :LTTKWLLRGKDHVV 1bpwA 487 :SQLKTVIVEMGDVD Number of specific fragments extracted= 18 number of extra gaps= 0 total=670 Number of alignments=41 # 1bpwA read from 1bpwA/merged-good-all-a2m # found chain 1bpwA in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDL 1bpwA 60 :VDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINN T0310 65 :LSLSTSKLNSLAIGLRQIAASSQDS 1bpwA 111 :TITEAEYDIDAAWQCIEYYAGLAPT T0310 92 :RVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQV 1bpwA 136 :LSGQHIQLPGGAFAYTRREPLGVCAGILAWNYPFMIAA T0310 130 :AALAIASGNGLLLKGGKEAAHSNRILHLLTQEA 1bpwA 176 :CAPALACGNAVVFKPSPMTPVTGVILAEIFHEA T0310 167 :GVKEAVQLVN 1bpwA 209 :GVPVGLVNVV T0310 177 :TREEVELDKMIDLIIPRGSSQLVRDIQK 1bpwA 224 :TGSLLCHHPNVAKVSFTGSVPTGKKVME T0310 205 :AAKGIPVMGHSEGICHMYVDSEASVDKVTRLVRDSKC 1bpwA 254 :AKTVKHVTLELGGKSPLLIFKDCELENAVRGALMANF T0310 242 :EYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQV 1bpwA 292 :TQGQVCTNGTRVFVQREIMPQFLEEVVKRTKAIVVG T0310 278 :KIHAGPKFASYLTFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTR 1bpwA 380 :YFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSI T0310 360 :DGYRFGLGAEVGISTSRIH 1bpwA 460 :SPVEVPFGGYKMSGFGREN T0310 381 :GPVGLEGLLTTKWLLRGKD 1bpwA 479 :GQATVDYYSQLKTVIVEMG Number of specific fragments extracted= 11 number of extra gaps= 0 total=681 Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a4sA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1a4sA expands to /projects/compbio/data/pdb/1a4s.pdb.gz 1a4sA:# T0310 read from 1a4sA/merged-good-all-a2m # 1a4sA read from 1a4sA/merged-good-all-a2m # adding 1a4sA to template set # found chain 1a4sA in template set Warning: unaligning (T0310)G144 because of BadResidue code BAD_PEPTIDE in next template residue (1a4sA)S191 Warning: unaligning (T0310)G145 because of BadResidue code BAD_PEPTIDE at template residue (1a4sA)S191 Warning: unaligning (T0310)A149 because of BadResidue code BAD_PEPTIDE in next template residue (1a4sA)V196 Warning: unaligning (T0310)H150 because of BadResidue code BAD_PEPTIDE at template residue (1a4sA)V196 Warning: unaligning (T0310)L366 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1a4sA)Y469 Warning: unaligning (T0310)G367 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a4sA)Y469 T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILL 1a4sA 60 :VDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAK T0310 50 :LEEAEGR 1a4sA 103 :LEVINNG T0310 59 :APLLK 1a4sA 110 :KTITE T0310 68 :STSKLNSLAIGLRQIAASSQDSVGRVLRR 1a4sA 115 :AEYDIDAAWQCIEYYAGLAPTLSGQHIQL T0310 100 :AKNLELEQVTVPIGVLLVIFE 1a4sA 144 :PGGAFAYTRREPLGVCAGILA T0310 121 :SRPDCL 1a4sA 166 :NYPFMI T0310 127 :PQVAALAIASGNGLLLK 1a4sA 173 :AWKCAPALACGNAVVFK T0310 146 :KEA 1a4sA 192 :PMT T0310 151 :SNRILHLLTQEA 1a4sA 197 :TGVILAEIFHEA T0310 167 :GV 1a4sA 209 :GV T0310 169 :KEAVQLVNTR 1a4sA 212 :VGLVNVVQGG T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKAA 1a4sA 226 :SLLCHHPNVAKVSFTGSVPTGKKVMEMS T0310 207 :KGIPVMGHSEGICHMYVDSEASVDKVTRLVRDS 1a4sA 256 :TVKHVTLELGGKSPLLIFKDCELENAVRGALMA T0310 240 :KCEYPAACNALETLLIHRDLLRT 1a4sA 290 :FLTQGQVCTNGTRVFVQREIMPQ T0310 264 :LFDQIIDMLRVEQVKIHAGPK 1a4sA 313 :FLEEVVKRTKAIVVGDPLLTE T0310 285 :FASYLTFV 1a4sA 336 :MGGLISKP T0310 293 :KSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFG 1a4sA 395 :TCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFG T0310 368 :AEVGISTSR 1a4sA 470 :KMSGFGREN T0310 381 :GPVGLEGLLTTKWLLRGKDHVVS 1a4sA 479 :GQATVDYYSQLKTVIVEMGDVDS Number of specific fragments extracted= 19 number of extra gaps= 3 total=700 Number of alignments=43 # 1a4sA read from 1a4sA/merged-good-all-a2m # found chain 1a4sA in template set Warning: unaligning (T0310)G144 because of BadResidue code BAD_PEPTIDE in next template residue (1a4sA)S191 Warning: unaligning (T0310)G145 because of BadResidue code BAD_PEPTIDE at template residue (1a4sA)S191 Warning: unaligning (T0310)A149 because of BadResidue code BAD_PEPTIDE in next template residue (1a4sA)V196 Warning: unaligning (T0310)H150 because of BadResidue code BAD_PEPTIDE at template residue (1a4sA)V196 Warning: unaligning (T0310)D360 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1a4sA)Y469 Warning: unaligning (T0310)G361 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a4sA)Y469 T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1a4sA 60 :VDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKT T0310 65 :LSLSTSKLNSLAIGLRQIAASSQDSVGRVLRR 1a4sA 112 :ITEAEYDIDAAWQCIEYYAGLAPTLSGQHIQL T0310 100 :AKNLELEQVTVPIGVLLVIFESRPDCLPQVAAL 1a4sA 144 :PGGAFAYTRREPLGVCAGILAWNYPFMIAAWKC T0310 133 :AIASGNGLLLK 1a4sA 179 :ALACGNAVVFK T0310 146 :KEA 1a4sA 192 :PMT T0310 151 :SNRILHLLTQEA 1a4sA 197 :TGVILAEIFHEA T0310 167 :GV 1a4sA 209 :GV T0310 169 :KEAVQLVNTR 1a4sA 212 :VGLVNVVQGG T0310 179 :EEVEL 1a4sA 223 :ETGSL T0310 184 :DKMIDLIIPRGSSQLVRDIQKAA 1a4sA 231 :HPNVAKVSFTGSVPTGKKVMEMS T0310 207 :KGIPV 1a4sA 256 :TVKHV T0310 212 :MGHS 1a4sA 262 :LELG T0310 217 :GICHMYVDSEASVDKVT 1a4sA 266 :GKSPLLIFKDCELENAV T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLR 1a4sA 284 :GALMANFLTQGQVCTNGTRVFVQREIMP T0310 263 :PLFDQIIDMLRVEQVKIHAGPK 1a4sA 312 :QFLEEVVKRTKAIVVGDPLLTE T0310 285 :FASYLTF 1a4sA 336 :MGGLISK T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWN 1a4sA 394 :MTCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYIN T0310 354 :ASTRFS 1a4sA 462 :VEVPFG T0310 362 :YRFGLGAEVG 1a4sA 470 :KMSGFGRENG T0310 372 :ISTSRIHARGPVGLEGLLT 1a4sA 481 :ATVDYYSQLKTVIVEMGDV Number of specific fragments extracted= 20 number of extra gaps= 3 total=720 Number of alignments=44 # 1a4sA read from 1a4sA/merged-good-all-a2m # found chain 1a4sA in template set Warning: unaligning (T0310)G144 because of BadResidue code BAD_PEPTIDE in next template residue (1a4sA)S191 Warning: unaligning (T0310)G145 because of BadResidue code BAD_PEPTIDE at template residue (1a4sA)S191 Warning: unaligning (T0310)A149 because of BadResidue code BAD_PEPTIDE in next template residue (1a4sA)V196 Warning: unaligning (T0310)H150 because of BadResidue code BAD_PEPTIDE at template residue (1a4sA)V196 Warning: unaligning (T0310)A368 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1a4sA)Y469 Warning: unaligning (T0310)E369 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a4sA)Y469 T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1a4sA 60 :VDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKT T0310 66 :SLSTSKLNSLAIGLRQIAASSQDS 1a4sA 112 :ITEAEYDIDAAWQCIEYYAGLAPT T0310 92 :RVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQV 1a4sA 136 :LSGQHIQLPGGAFAYTRREPLGVCAGILAWNYPFMIAA T0310 130 :AALAIASGNGLLLK 1a4sA 176 :CAPALACGNAVVFK T0310 146 :KEA 1a4sA 192 :PMT T0310 151 :SNRILHLLTQ 1a4sA 197 :TGVILAEIFH T0310 165 :IHGVKEAVQLVN 1a4sA 207 :EAGVPVGLVNVV T0310 177 :TREEVELDKMIDLIIPRGSSQLVRDIQK 1a4sA 224 :TGSLLCHHPNVAKVSFTGSVPTGKKVME T0310 205 :AAKGIPVMGHSEGICHMYVDSEASVDKVTRLVRDSKC 1a4sA 254 :AKTVKHVTLELGGKSPLLIFKDCELENAVRGALMANF T0310 242 :EYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQV 1a4sA 292 :TQGQVCTNGTRVFVQREIMPQFLEEVVKRTKAIVVG T0310 278 :KIHAGPKFASYLTFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTR 1a4sA 380 :YFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSI T0310 360 :DGYRFGLG 1a4sA 460 :SPVEVPFG T0310 370 :VGISTSRIH 1a4sA 470 :KMSGFGREN T0310 381 :GPVGLEGLLTTKWLLRGKD 1a4sA 479 :GQATVDYYSQLKTVIVEMG Number of specific fragments extracted= 14 number of extra gaps= 3 total=734 Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vluA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0310/1vluA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0310/1vluA/merged-good-all-a2m.gz for input Trying 1vluA/merged-good-all-a2m Error: Couldn't open file 1vluA/merged-good-all-a2m or 1vluA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1eyyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1eyyA expands to /projects/compbio/data/pdb/1eyy.pdb.gz 1eyyA:# T0310 read from 1eyyA/merged-good-all-a2m # 1eyyA read from 1eyyA/merged-good-all-a2m # adding 1eyyA to template set # found chain 1eyyA in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILL 1eyyA 32 :VNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIA T0310 50 :LEEAEGRLAAPLLK 1eyyA 75 :RAHLETALPEVRLT T0310 70 :SKLNSLAIGLRQIAASSQ 1eyyA 89 :GEIARTANQLRLFADVVN T0310 88 :DSVGRVLRRT 1eyyA 109 :SYHQAILDTP T0310 100 :AKNL 1eyyA 119 :NPTR T0310 104 :ELEQVTVPIGVLLVIFE 1eyyA 129 :DIRRQQIALGPVAVFGA T0310 121 :SRP 1eyyA 147 :NFP T0310 124 :DCL 1eyyA 151 :AFS T0310 127 :PQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGV 1eyyA 156 :GGDTASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQL T0310 169 :KEAVQLVNTR 1eyyA 199 :QAIFTLLQGN T0310 179 :EEVELDKMIDLIIPRGSSQLVRDIQKAA 1eyyA 214 :QALVSHPEIKAVGFTGSVGGGRALFNLA T0310 207 :KGIPVMGHSEGICHMYVDSEA 1eyyA 246 :EPIPFYGELGAINPTFIFPSA T0310 230 :DKVTRLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQ 1eyyA 272 :DLADQFVASMTMGCGQFCTKPGVVFALNTPETQAFIETAQSLIRQQS T0310 277 :VK 1eyyA 320 :ST T0310 293 :KSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTE 1eyyA 372 :PAWEEEIFGPQSLIVVCENVADMLSLSEMLAGSLTATIHAT T0310 334 :DENTAEFFLQHVD 1eyyA 415 :DYPQVSQLIPRLE T0310 347 :SACVFWNASTRFS 1eyyA 430 :AGRLVFNGWPTGV T0310 360 :DGYRFGLGAEVGISTS 1eyyA 446 :YAMVHGGPYPASTHSA T0310 377 :IHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGS 1eyyA 462 :STSVGAEAIHRWLRPVAYQALPESLLPDSLKAEN Number of specific fragments extracted= 19 number of extra gaps= 0 total=753 Number of alignments=46 # 1eyyA read from 1eyyA/merged-good-all-a2m # found chain 1eyyA in template set T0310 2 :VEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA 1eyyA 32 :VNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALP T0310 65 :LSLSTSKLNSLAIGLRQIAASSQD 1eyyA 84 :EVRLTGEIARTANQLRLFADVVNS T0310 89 :SVGRVLRR 1eyyA 110 :YHQAILDT T0310 99 :IAKNL 1eyyA 118 :PNPTR T0310 104 :ELEQVTVPIGVLLVIFESRPDCLP 1eyyA 129 :DIRRQQIALGPVAVFGASNFPLAF T0310 128 :QVAA 1eyyA 157 :GDTA T0310 133 :AIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGV 1eyyA 162 :ALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQL T0310 169 :KEAVQLVNT 1eyyA 199 :QAIFTLLQG T0310 178 :R 1eyyA 209 :Q T0310 179 :EEVEL 1eyyA 211 :ALGQA T0310 184 :DKMIDLIIPRGSSQLVRDIQKAA 1eyyA 219 :HPEIKAVGFTGSVGGGRALFNLA T0310 207 :KGIPV 1eyyA 246 :EPIPF T0310 212 :MGHS 1eyyA 252 :GELG T0310 217 :GICHMYVDSEA 1eyyA 256 :AINPTFIFPSA T0310 232 :VT 1eyyA 273 :LA T0310 234 :RLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQ 1eyyA 276 :QFVASMTMGCGQFCTKPGVVFALNTPETQAFIETAQSLIRQQS T0310 285 :FASYLTF 1eyyA 319 :PSTLLTP T0310 292 :VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTE 1eyyA 371 :HPAWEEEIFGPQSLIVVCENVADMLSLSEMLAGSLTATIHAT T0310 334 :DENTAEFFLQHVD 1eyyA 415 :DYPQVSQLIPRLE T0310 347 :SACVFWN 1eyyA 430 :AGRLVFN T0310 354 :ASTRFSDGYRFGLGAEVG 1eyyA 446 :YAMVHGGPYPASTHSAST T0310 372 :ISTSRIHA 1eyyA 465 :VGAEAIHR T0310 387 :GLLTTKWLLRGKDHVVSDFSEH 1eyyA 473 :WLRPVAYQALPESLLPDSLKAE T0310 409 :GSLKYLHENLP 1eyyA 497 :LEIARAVDGKA Number of specific fragments extracted= 24 number of extra gaps= 0 total=777 Number of alignments=47 # 1eyyA read from 1eyyA/merged-good-all-a2m # found chain 1eyyA in template set T0310 1 :TVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDL 1eyyA 31 :EVNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLET T0310 57 :LAAPLLKRLSLS 1eyyA 82 :LPEVRLTGEIAR T0310 72 :LNSLAIGLRQIAASSQDS 1eyyA 94 :TANQLRLFADVVNSGSYH T0310 92 :RVLRRTRIAKN 1eyyA 112 :QAILDTPNPTR T0310 103 :LELEQVTVPIGVLLVIFESRPDCLPQV 1eyyA 128 :PDIRRQQIALGPVAVFGASNFPLAFSA T0310 130 :AALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVN 1eyyA 159 :TASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLL T0310 177 :TREEVELDKMIDLIIPRGSSQLVRDIQK 1eyyA 212 :LGQALVSHPEIKAVGFTGSVGGGRALFN T0310 205 :AAKGIPVMGHSEGICHMYVDSEA 1eyyA 244 :RPEPIPFYGELGAINPTFIFPSA T0310 228 :S 1eyyA 272 :D T0310 231 :K 1eyyA 273 :L T0310 233 :T 1eyyA 274 :A T0310 234 :RLVRDSKCEYPAACNALETLLIHR 1eyyA 276 :QFVASMTMGCGQFCTKPGVVFALN T0310 261 :RTPLFDQIIDMLRVEQV 1eyyA 300 :TPETQAFIETAQSLIRQ T0310 278 :KIHAGPKFASYL 1eyyA 347 :TFSQAESPCVAS T0310 290 :TFVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTE 1eyyA 369 :RKHPAWEEEIFGPQSLIVVCENVADMLSLSEMLAGSLTATIHAT T0310 334 :DENTAEFFLQHVD 1eyyA 415 :DYPQVSQLIPRLE T0310 347 :SACVFWNASTRFSD 1eyyA 430 :AGRLVFNGWPTGVE T0310 361 :GYRFGLGAEVGIST 1eyyA 445 :GYAMVHGGPYPAST T0310 375 :SRIHARGPVGLEGLLTTKWL 1eyyA 460 :SASTSVGAEAIHRWLRPVAY T0310 403 :SDFSEHGSLKYLHENLPIPQ 1eyyA 480 :QALPESLLPDSLKAENPLEI Number of specific fragments extracted= 20 number of extra gaps= 0 total=797 Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kaeA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0310 read from 1kaeA/merged-good-all-a2m # 1kaeA read from 1kaeA/merged-good-all-a2m # found chain 1kaeA in training set T0310 16 :LATLEPEQRAEI 1kaeA 9 :WNSCTAEQQRQL T0310 28 :IHHLADLLTDQRDEILLAN 1kaeA 36 :VNDILDNVKARGDEALREY T0310 47 :KKDLEEAEGRLAAPLLKR 1kaeA 70 :AEEIAAASERLSDELKQA T0310 72 :LNSLAIGLRQIAAS 1kaeA 88 :MAVAVKNIETFHTA T0310 87 :QDSVGRVLRR 1kaeA 102 :QKLPPVDVET T0310 100 :AKNLELEQVTVPIGVLLVIFE 1kaeA 112 :QPGVRCQQVTRPVASVGLYIP T0310 121 :SRPDCL 1kaeA 135 :SAPLFS T0310 127 :PQVAALAIASGN 1kaeA 143 :LMLATPASIAGC T0310 139 :GLLLKGGKEAAHSNRIL 1kaeA 157 :VVLCSPPPIADEILYAA T0310 160 :QEA 1kaeA 174 :QLC T0310 167 :GVKEAVQL 1kaeA 177 :GVQDVFNV T0310 177 :TR 1kaeA 185 :GG T0310 182 :ELDKMIDLIIPRGS 1kaeA 198 :ESVPKVDKIFGPGN T0310 196 :SQLVRDIQKAAKGIPVMGHSEGICH 1kaeA 215 :TEAKRQVSQRLDGAAIDMPAGPSEV T0310 221 :MYVDSEASVDKVTRLVRDS 1kaeA 241 :VIADSGATPDFVASDLLSQ T0310 240 :KCEYPAA 1kaeA 262 :HGPDSQV T0310 252 :TLLIHRD 1kaeA 269 :ILLTPAA T0310 263 :PLFDQIIDMLRVEQVKIHA 1kaeA 276 :DMARRVAEAVERQLAELPR T0310 292 :VKSLRTEYGDLELC 1kaeA 295 :AETARQALNASRLI T0310 308 :VVDNVQDAIDHIHKYGSSH 1kaeA 309 :VTKDLAQCVEISNQYGPEH T0310 328 :DVIVTEDENTA 1kaeA 328 :LIIQTRNAREL T0310 346 :DSACVFW 1kaeA 344 :SAGSVFL Number of specific fragments extracted= 22 number of extra gaps= 0 total=819 Number of alignments=49 # 1kaeA read from 1kaeA/merged-good-all-a2m # found chain 1kaeA in training set Warning: unaligning (T0310)E52 because of BadResidue code BAD_PEPTIDE in next template residue (1kaeA)T61 Warning: unaligning (T0310)A53 because of BadResidue code BAD_PEPTIDE at template residue (1kaeA)T61 T0310 16 :LATLEPEQRAEI 1kaeA 9 :WNSCTAEQQRQL T0310 28 :IHHLADLLTDQRDEILLANKKDLE 1kaeA 36 :VNDILDNVKARGDEALREYSAKFD T0310 54 :E 1kaeA 62 :T T0310 55 :G 1kaeA 64 :T T0310 56 :RLAAPLLKRLSL 1kaeA 67 :KVSAEEIAAASE T0310 68 :STSKLNSLAIGLRQIAAS 1kaeA 84 :LKQAMAVAVKNIETFHTA T0310 87 :QD 1kaeA 102 :QK T0310 92 :RVLRRTRIAKNLELEQVTVPIGVLLVIFE 1kaeA 104 :LPPVDVETQPGVRCQQVTRPVASVGLYIP T0310 121 :SRPDCLPQVAAL 1kaeA 135 :SAPLFSTVLMLA T0310 133 :AIASGN 1kaeA 149 :ASIAGC T0310 139 :GLLLKGGKEAAHSNRILH 1kaeA 157 :VVLCSPPPIADEILYAAQ T0310 165 :IHGVKEAVQL 1kaeA 175 :LCGVQDVFNV T0310 177 :TR 1kaeA 185 :GG T0310 179 :EE 1kaeA 188 :QA T0310 184 :DKMIDLIIPRGS 1kaeA 200 :VPKVDKIFGPGN T0310 196 :SQLVRDIQKAAKGIPV 1kaeA 215 :TEAKRQVSQRLDGAAI T0310 212 :MGHSEGICHMYVDSEASVDKVT 1kaeA 232 :MPAGPSEVLVIADSGATPDFVA T0310 234 :RLVRDSKCEYPAAC 1kaeA 255 :DLLSQAEHGPDSQV T0310 252 :TLLIHRD 1kaeA 269 :ILLTPAA T0310 263 :PLFDQIIDMLRVEQVKIHA 1kaeA 276 :DMARRVAEAVERQLAELPR T0310 292 :VKSLRTEYGDL 1kaeA 295 :AETARQALNAS T0310 305 :CIEVVDNVQDAIDHIHKYGSSH 1kaeA 306 :RLIVTKDLAQCVEISNQYGPEH T0310 328 :DVIVTEDENTA 1kaeA 328 :LIIQTRNAREL T0310 344 :HV 1kaeA 341 :SI T0310 346 :DSACVFWN 1kaeA 344 :SAGSVFLG T0310 354 :ASTRFS 1kaeA 367 :HVLPTY Number of specific fragments extracted= 26 number of extra gaps= 1 total=845 Number of alignments=50 # 1kaeA read from 1kaeA/merged-good-all-a2m # found chain 1kaeA in training set T0310 16 :LATLEPEQRAEI 1kaeA 9 :WNSCTAEQQRQL T0310 32 :ADLLTDQRDEILLANKKDLEEAEGRL 1kaeA 33 :TRTVNDILDNVKARGDEALREYSAKF T0310 58 :AAPLLKRLS 1kaeA 69 :SAEEIAAAS T0310 67 :LSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQV 1kaeA 79 :RLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVASVGLYIPGGSAPLFST T0310 130 :AALAIASGN 1kaeA 146 :ATPASIAGC T0310 139 :GLLLKGGKEAAHSNRILH 1kaeA 157 :VVLCSPPPIADEILYAAQ T0310 165 :IHGVKEAVQLVN 1kaeA 175 :LCGVQDVFNVGG T0310 177 :TREEVELDKMIDLIIPRGSS 1kaeA 193 :LAFGTESVPKVDKIFGPGNA T0310 197 :QLVRDIQKAAKGIPVMGHS 1kaeA 216 :EAKRQVSQRLDGAAIDMPA T0310 217 :GICH 1kaeA 235 :GPSE T0310 221 :MYVDSEASVDKVTRLVRD 1kaeA 241 :VIADSGATPDFVASDLLS T0310 239 :SKCEYPAAC 1kaeA 261 :EHGPDSQVI T0310 253 :LLIH 1kaeA 270 :LLTP T0310 260 :LRTPLFDQIIDMLRVEQ 1kaeA 274 :AADMARRVAEAVERQLA T0310 288 :YLTFVKSLRTEYGDLELC 1kaeA 291 :ELPRAETARQALNASRLI T0310 308 :VVDNVQDAIDHIHKYGSSH 1kaeA 309 :VTKDLAQCVEISNQYGPEH T0310 328 :DVIVTEDENTA 1kaeA 328 :LIIQTRNAREL T0310 346 :DSACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWL 1kaeA 344 :SAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV Number of specific fragments extracted= 18 number of extra gaps= 0 total=863 Number of alignments=51 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0310//projects/compbio/experiments/protein-predict/casp7/T0310/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0310//projects/compbio/experiments/protein-predict/casp7/T0310/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0310/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0310/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0310)L115.CB, (T0310)I191.CB) [> 3.7774 = 6.2956 < 8.1843] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L116.CB, (T0310)L141.CB) [> 3.1758 = 5.2931 < 6.8810] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L116.CB, (T0310)I187.CB) [> 2.8063 = 4.6772 < 6.0804] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L116.CB, (T0310)L189.CB) [> 4.2474 = 7.0790 < 9.2028] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L116.CB, (T0310)I190.CB) [> 2.7805 = 4.6342 < 6.0245] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L116.CB, (T0310)I191.CB) [> 4.2083 = 7.0138 < 9.1179] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V117.CB, (T0310)L140.CB) [> 3.5999 = 5.9999 < 7.7998] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V117.CB, (T0310)L141.CB) [> 4.1572 = 6.9287 < 9.0073] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V117.CB, (T0310)L142.CB) [> 2.9150 = 4.8584 < 6.3159] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V117.CB, (T0310)I191.CB) [> 2.8565 = 4.7608 < 6.1891] w=1.0000 to align # Constraint # added constraint: constraint((T0310)I118.CB, (T0310)K143.CB) [> 3.0691 = 5.1151 < 6.6497] w=1.0000 to align # Constraint # added constraint: constraint((T0310)I118.CB, (T0310)I190.CB) [> 4.1668 = 6.9447 < 9.0281] w=1.0000 to align # Constraint # added constraint: constraint((T0310)I118.CB, (T0310)I191.CB) [> 4.1952 = 6.9920 < 9.0896] w=1.0000 to align # Constraint # added constraint: constraint((T0310)I118.CB, (T0310)P192.CB) [> 2.6261 = 4.3769 < 5.6899] w=1.0000 to align # Constraint # added constraint: constraint((T0310)I118.CB, (T0310)R193.CB) [> 4.2217 = 7.0362 < 9.1471] w=1.0000 to align # Constraint # added constraint: constraint((T0310)F119.CB, (T0310)L142.CB) [> 4.1652 = 6.9420 < 9.0246] w=1.0000 to align # Constraint # added constraint: constraint((T0310)F119.CB, (T0310)K143.CB) [> 4.1640 = 6.9400 < 9.0220] w=1.0000 to align # Constraint # added constraint: constraint((T0310)D188.CB, (T0310)P210.CB) [> 4.1839 = 6.9733 < 9.0652] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L189.CB, (T0310)P210.CB) [> 2.6870 = 4.4784 < 5.8219] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L189.CB, (T0310)V211.CB) [> 4.3404 = 7.2340 < 9.4042] w=1.0000 to align # Constraint # added constraint: constraint((T0310)I190.CB, (T0310)I202.CB) [> 3.7561 = 6.2602 < 8.1383] w=1.0000 to align # Constraint # added constraint: constraint((T0310)P111.CB, (T0310)S136.CB) [> 3.2131 = 5.3552 < 6.9618] w=1.0000 to align # Constraint # added constraint: constraint((T0310)P111.CB, (T0310)G137.CA) [> 2.4587 = 4.0978 < 5.3271] w=1.0000 to align # Constraint # added constraint: constraint((T0310)P111.CB, (T0310)N138.CB) [> 2.8489 = 4.7481 < 6.1726] w=1.0000 to align # Constraint # added constraint: constraint((T0310)I112.CB, (T0310)N138.CB) [> 3.5741 = 5.9568 < 7.7438] w=1.0000 to align # Constraint # added constraint: constraint((T0310)I112.CB, (T0310)D188.CB) [> 2.7289 = 4.5481 < 5.9125] w=1.0000 to align # Constraint # added constraint: constraint((T0310)I112.CB, (T0310)L189.CB) [> 3.0541 = 5.0902 < 6.6173] w=1.0000 to align # Constraint # added constraint: constraint((T0310)G113.CA, (T0310)N138.CB) [> 3.0201 = 5.0334 < 6.5435] w=1.0000 to align # Constraint # added constraint: constraint((T0310)G113.CA, (T0310)D188.CB) [> 2.6825 = 4.4708 < 5.8121] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V114.CB, (T0310)N138.CB) [> 4.1609 = 6.9349 < 9.0154] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V114.CB, (T0310)G139.CA) [> 3.3581 = 5.5968 < 7.2758] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V114.CB, (T0310)M186.CB) [> 3.8378 = 6.3963 < 8.3152] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V114.CB, (T0310)I187.CB) [> 3.1862 = 5.3104 < 6.9035] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V114.CB, (T0310)D188.CB) [> 3.2743 = 5.4571 < 7.0943] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L115.CB, (T0310)A133.CB) [> 2.9655 = 4.9424 < 6.4252] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L115.CB, (T0310)N138.CB) [> 2.9507 = 4.9179 < 6.3932] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L115.CB, (T0310)G139.CA) [> 3.6925 = 6.1541 < 8.0003] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L115.CB, (T0310)L140.CB) [> 3.4207 = 5.7012 < 7.4116] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L115.CB, (T0310)I187.CB) [> 4.1531 = 6.9218 < 8.9983] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L115.CB, (T0310)D188.CB) [> 3.8892 = 6.4820 < 8.4266] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L115.CB, (T0310)L189.CB) [> 2.6938 = 4.4897 < 5.8366] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L115.CB, (T0310)I190.CB) [> 4.3405 = 7.2342 < 9.4045] w=1.0000 to align # Constraint # added constraint: constraint((T0310)A245.CB, (T0310)D301.CB) [> 4.1592 = 6.9321 < 9.0117] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L254.CB, (T0310)V309.CB) [> 3.2116 = 5.3527 < 6.9584] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L254.CB, (T0310)A315.CB) [> 2.9477 = 4.9128 < 6.3867] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L254.CB, (T0310)H318.CB) [> 3.7980 = 6.3299 < 8.2289] w=1.0000 to align # Constraint # added constraint: constraint((T0310)L254.CB, (T0310)I319.CB) [> 4.0424 = 6.7373 < 8.7585] w=1.0000 to align # Constraint # added constraint: constraint((T0310)I255.CB, (T0310)V308.CB) [> 3.6893 = 6.1488 < 7.9935] w=1.0000 to align # Constraint # added constraint: constraint((T0310)I255.CB, (T0310)V309.CB) [> 4.1848 = 6.9747 < 9.0671] w=1.0000 to align # Constraint # added constraint: constraint((T0310)H256.CB, (T0310)V309.CB) [> 3.5308 = 5.8846 < 7.6500] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V309.CB, (T0310)H318.CB) [> 4.0026 = 6.6710 < 8.6723] w=1.0000 to align # Constraint # added constraint: constraint((T0310)S325.CB, (T0310)S347.CB) [> 2.9654 = 4.9423 < 6.4250] w=1.0000 to align # Constraint # added constraint: constraint((T0310)S325.CB, (T0310)A348.CB) [> 4.0043 = 6.6738 < 8.6760] w=1.0000 to align # Constraint # added constraint: constraint((T0310)H326.CB, (T0310)S347.CB) [> 3.8627 = 6.4378 < 8.3692] w=1.0000 to align # Constraint # added constraint: constraint((T0310)H326.CB, (T0310)A348.CB) [> 3.3464 = 5.5774 < 7.2506] w=1.0000 to align # Constraint # added constraint: constraint((T0310)H326.CB, (T0310)C349.CB) [> 4.0318 = 6.7197 < 8.7357] w=1.0000 to align # Constraint # added constraint: constraint((T0310)D328.CB, (T0310)S347.CB) [> 2.4534 = 4.0890 < 5.3156] w=1.0000 to align # Constraint # added constraint: constraint((T0310)D328.CB, (T0310)C349.CB) [> 4.2681 = 7.1135 < 9.2476] w=1.0000 to align # Constraint # added constraint: constraint((T0310)D328.CB, (T0310)V350.CB) [> 2.9280 = 4.8800 < 6.3440] w=1.0000 to align # Constraint # added constraint: constraint((T0310)D328.CB, (T0310)F351.CB) [> 4.3243 = 7.2071 < 9.3692] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V329.CB, (T0310)V350.CB) [> 4.3302 = 7.2170 < 9.3821] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V329.CB, (T0310)F351.CB) [> 2.6609 = 4.4349 < 5.7653] w=1.0000 to align # Constraint # added constraint: constraint((T0310)I330.CB, (T0310)W352.CB) [> 3.0456 = 5.0760 < 6.5987] w=1.0000 to align # Constraint # added constraint: constraint((T0310)I190.CB, (T0310)V211.CB) [> 3.1146 = 5.1911 < 6.7484] w=1.0000 to align # Constraint # added constraint: constraint((T0310)M221.CB, (T0310)L253.CB) [> 3.0104 = 5.0173 < 6.5224] w=1.0000 to align # Constraint # added constraint: constraint((T0310)M221.CB, (T0310)L254.CB) [> 4.1554 = 6.9257 < 9.0034] w=1.0000 to align # Constraint # added constraint: constraint((T0310)M221.CB, (T0310)V329.CB) [> 2.5600 = 4.2666 < 5.5466] w=1.0000 to align # Constraint # added constraint: constraint((T0310)M221.CB, (T0310)V331.CB) [> 4.2257 = 7.0429 < 9.1557] w=1.0000 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)L254.CB) [> 2.9879 = 4.9799 < 6.4739] w=1.0000 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)A315.CB) [> 3.2059 = 5.3432 < 6.9462] w=1.0000 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)I319.CB) [> 4.0060 = 6.6767 < 8.6797] w=1.0000 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)V329.CB) [> 4.0649 = 6.7749 < 8.8073] w=1.0000 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)I330.CB) [> 2.7941 = 4.6568 < 6.0539] w=1.0000 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)V331.CB) [> 4.0227 = 6.7045 < 8.7158] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V223.CB, (T0310)L253.CB) [> 4.0225 = 6.7042 < 8.7155] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V223.CB, (T0310)L254.CB) [> 4.1775 = 6.9624 < 9.0512] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V223.CB, (T0310)I255.CB) [> 2.7693 = 4.6156 < 6.0002] w=1.0000 to align # Constraint # added constraint: constraint((T0310)V223.CB, (T0310)V331.CB) [> 2.6867 = 4.4779 < 5.8213] w=1.0000 to align # Constraint # added constraint: constraint((T0310)D224.CB, (T0310)V331.CB) [> 3.7973 = 6.3288 < 8.2274] w=1.0000 to align # Constraint # added constraint: constraint((T0310)D224.CB, (T0310)T332.CB) [> 2.3935 = 3.9892 < 5.1859] w=1.0000 to align # Constraint # added constraint: constraint((T0310)S225.CB, (T0310)H256.CB) [> 3.0442 = 5.0737 < 6.5958] w=1.0000 to align # Constraint # added constraint: constraint((T0310)E226.CB, (T0310)T332.CB) [> 3.5218 = 5.8697 < 7.6306] w=1.0000 to align # Constraint # added constraint: constraint((T0310)E226.CB, (T0310)E333.CB) [> 2.7147 = 4.5244 < 5.8818] w=1.0000 to align # Constraint # added constraint: constraint((T0310)A227.CB, (T0310)V331.CB) [> 2.3799 = 3.9664 < 5.1564] w=1.0000 to align # Constraint # added constraint: constraint((T0310)A227.CB, (T0310)T332.CB) [> 3.2838 = 5.4729 < 7.1148] w=1.0000 to align # Constraint # added constraint: constraint((T0310)I187.CB, (T0310)I209.CB) [> 3.8644 = 6.4407 < 8.3729] w=0.9979 to align # Constraint # added constraint: constraint((T0310)D188.CB, (T0310)I209.CB) [> 3.9178 = 6.5297 < 8.4886] w=0.9979 to align # Constraint # added constraint: constraint((T0310)L189.CB, (T0310)I209.CB) [> 3.6937 = 6.1561 < 8.0030] w=0.9979 to align # Constraint # added constraint: constraint((T0310)I190.CB, (T0310)I209.CB) [> 3.6210 = 6.0350 < 7.8455] w=0.9979 to align # Constraint # added constraint: constraint((T0310)V199.CB, (T0310)G213.CA) [> 3.6221 = 6.0368 < 7.8479] w=0.9979 to align # Constraint # added constraint: constraint((T0310)I202.CB, (T0310)V211.CB) [> 4.0037 = 6.6729 < 8.6747] w=0.9979 to align # Constraint # added constraint: constraint((T0310)C219.CB, (T0310)H326.CB) [> 3.5625 = 5.9375 < 7.7188] w=0.9979 to align # Constraint # added constraint: constraint((T0310)L253.CB, (T0310)C305.CB) [> 4.0470 = 6.7451 < 8.7686] w=0.9979 to align # Constraint # added constraint: constraint((T0310)I255.CB, (T0310)L264.CB) [> 3.5004 = 5.8340 < 7.5842] w=0.9793 to align # Constraint # added constraint: constraint((T0310)L142.CB, (T0310)L174.CB) [> 3.3815 = 5.6359 < 7.3266] w=0.9793 to align # Constraint # added constraint: constraint((T0310)L140.CB, (T0310)V172.CB) [> 3.4593 = 5.7655 < 7.4951] w=0.9793 to align # Constraint # added constraint: constraint((T0310)M221.CB, (T0310)T252.CB) [> 4.1968 = 6.9946 < 9.0930] w=0.9772 to align # Constraint # added constraint: constraint((T0310)L253.CB, (T0310)L304.CB) [> 3.8101 = 6.3502 < 8.2553] w=0.9772 to align # Constraint # added constraint: constraint((T0310)R257.CB, (T0310)V308.CB) [> 3.2609 = 5.4348 < 7.0653] w=0.9772 to align # Constraint # added constraint: constraint((T0310)I330.CB, (T0310)N353.CB) [> 4.5439 = 7.5731 < 9.8451] w=0.9772 to align # Constraint # added constraint: constraint((T0310)V331.CB, (T0310)N353.CB) [> 3.5162 = 5.8604 < 7.6185] w=0.9772 to align # Constraint # added constraint: constraint((T0310)T332.CB, (T0310)N353.CB) [> 4.3826 = 7.3044 < 9.4957] w=0.9772 to align # Constraint # added constraint: constraint((T0310)T252.CB, (T0310)C305.CB) [> 3.1049 = 5.1749 < 6.7274] w=0.9752 to align # Constraint # added constraint: constraint((T0310)H220.CB, (T0310)V329.CB) [> 4.4228 = 7.3714 < 9.5828] w=0.9752 to align # Constraint # added constraint: constraint((T0310)H220.CB, (T0310)D328.CB) [> 3.3366 = 5.5610 < 7.2292] w=0.9752 to align # Constraint # added constraint: constraint((T0310)H220.CB, (T0310)T252.CB) [> 2.8984 = 4.8307 < 6.2800] w=0.9752 to align # Constraint # added constraint: constraint((T0310)C219.CB, (T0310)V329.CB) [> 4.3207 = 7.2012 < 9.3615] w=0.9545 to align # Constraint # added constraint: constraint((T0310)H220.CB, (T0310)L254.CB) [> 3.5069 = 5.8447 < 7.5982] w=0.9545 to align # Constraint # added constraint: constraint((T0310)H220.CB, (T0310)I319.CB) [> 2.8443 = 4.7406 < 6.1627] w=0.9545 to align # Constraint # added constraint: constraint((T0310)T252.CB, (T0310)E307.CB) [> 3.8481 = 6.4135 < 8.3375] w=0.9545 to align # Constraint # added constraint: constraint((T0310)L253.CB, (T0310)I306.CB) [> 2.8042 = 4.6736 < 6.0757] w=0.9545 to align # Constraint # added constraint: constraint((T0310)L253.CB, (T0310)E307.CB) [> 4.1210 = 6.8684 < 8.9289] w=0.9545 to align # Constraint # added constraint: constraint((T0310)L254.CB, (T0310)E307.CB) [> 3.1156 = 5.1927 < 6.7505] w=0.9545 to align # Constraint # added constraint: constraint((T0310)I255.CB, (T0310)E307.CB) [> 4.3819 = 7.3032 < 9.4942] w=0.9545 to align # Constraint # added constraint: constraint((T0310)I316.CB, (T0310)H344.CB) [> 3.2394 = 5.3991 < 7.0188] w=0.9545 to align # Constraint # added constraint: constraint((T0310)I319.CB, (T0310)V345.CB) [> 3.6784 = 6.1306 < 7.9698] w=0.9545 to align # Constraint # added constraint: constraint((T0310)H320.CB, (T0310)H344.CB) [> 4.3761 = 7.2935 < 9.4816] w=0.9545 to align # Constraint # added constraint: constraint((T0310)D328.CB, (T0310)V345.CB) [> 2.8501 = 4.7501 < 6.1752] w=0.9545 to align # Constraint # added constraint: constraint((T0310)C219.CB, (T0310)D328.CB) [> 3.6171 = 6.0285 < 7.8370] w=0.9524 to align # Constraint # added constraint: constraint((T0310)D224.CB, (T0310)D334.CB) [> 4.0407 = 6.7345 < 8.7549] w=0.9379 to align # Constraint # added constraint: constraint((T0310)V117.CB, (T0310)A133.CB) [> 4.2478 = 7.0796 < 9.2035] w=0.9379 to align # Constraint # added constraint: constraint((T0310)E120.CB, (T0310)R193.CB) [> 2.9562 = 4.9271 < 6.4052] w=0.9379 to align # Constraint # added constraint: constraint((T0310)E120.CB, (T0310)G194.CA) [> 2.9879 = 4.9798 < 6.4737] w=0.9379 to align # Constraint # added constraint: constraint((T0310)I190.CB, (T0310)P210.CB) [> 4.4669 = 7.4448 < 9.6783] w=0.9379 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)D328.CB) [> 4.4305 = 7.3842 < 9.5995] w=0.9379 to align # Constraint # added constraint: constraint((T0310)D224.CB, (T0310)H256.CB) [> 3.4801 = 5.8002 < 7.5402] w=0.9379 to align # Constraint # added constraint: constraint((T0310)I330.CB, (T0310)V350.CB) [> 4.1216 = 6.8693 < 8.9302] w=0.9379 to align # Constraint # added constraint: constraint((T0310)I330.CB, (T0310)F351.CB) [> 4.4201 = 7.3668 < 9.5768] w=0.9379 to align # Constraint # added constraint: constraint((T0310)I112.CB, (T0310)P210.CB) [> 4.0167 = 6.6946 < 8.7029] w=0.9358 to align # Constraint # added constraint: constraint((T0310)I255.CB, (T0310)I306.CB) [> 3.7900 = 6.3166 < 8.2116] w=0.9337 to align # Constraint # added constraint: constraint((T0310)L142.CB, (T0310)V175.CB) [> 3.8927 = 6.4878 < 8.4342] w=0.9337 to align # Constraint # added constraint: constraint((T0310)T233.CB, (T0310)Q267.CB) [> 2.8495 = 4.7491 < 6.1739] w=0.9337 to align # Constraint # added constraint: constraint((T0310)I28.CB, (T0310)A135.CB) [> 3.7608 = 6.2679 < 8.1483] w=0.9317 to align # Constraint # added constraint: constraint((T0310)L34.CB, (T0310)L158.CB) [> 2.7472 = 4.5787 < 5.9523] w=0.9317 to align # Constraint # added constraint: constraint((T0310)I42.CB, (T0310)S151.CB) [> 3.9101 = 6.5168 < 8.4719] w=0.9317 to align # Constraint # added constraint: constraint((T0310)I42.CB, (T0310)I154.CB) [> 3.5621 = 5.9369 < 7.7179] w=0.9317 to align # Constraint # added constraint: constraint((T0310)G113.CA, (T0310)G139.CA) [> 3.8000 = 6.3334 < 8.2334] w=0.9317 to align # Constraint # added constraint: constraint((T0310)G113.CA, (T0310)L189.CB) [> 4.3472 = 7.2453 < 9.4188] w=0.9317 to align # Constraint # added constraint: constraint((T0310)V114.CB, (T0310)L141.CB) [> 3.9135 = 6.5225 < 8.4792] w=0.9317 to align # Constraint # added constraint: constraint((T0310)L115.CB, (T0310)L141.CB) [> 4.3722 = 7.2870 < 9.4732] w=0.9317 to align # Constraint # added constraint: constraint((T0310)L116.CB, (T0310)K143.CB) [> 4.1869 = 6.9782 < 9.0717] w=0.9317 to align # Constraint # added constraint: constraint((T0310)V117.CB, (T0310)K143.CB) [> 4.1701 = 6.9502 < 9.0352] w=0.9317 to align # Constraint # added constraint: constraint((T0310)F119.CB, (T0310)R193.CB) [> 3.6639 = 6.1065 < 7.9384] w=0.9317 to align # Constraint # added constraint: constraint((T0310)N138.CB, (T0310)L189.CB) [> 4.4983 = 7.4971 < 9.7462] w=0.9317 to align # Constraint # added constraint: constraint((T0310)P192.CB, (T0310)I202.CB) [> 3.1232 = 5.2054 < 6.7670] w=0.9317 to align # Constraint # added constraint: constraint((T0310)P192.CB, (T0310)V211.CB) [> 4.2769 = 7.1282 < 9.2667] w=0.9317 to align # Constraint # added constraint: constraint((T0310)P192.CB, (T0310)G213.CA) [> 3.4199 = 5.6999 < 7.4098] w=0.9317 to align # Constraint # added constraint: constraint((T0310)C219.CB, (T0310)N248.CB) [> 3.5508 = 5.9180 < 7.6934] w=0.9317 to align # Constraint # added constraint: constraint((T0310)I28.CB, (T0310)I134.CB) [> 3.9260 = 6.5434 < 8.5064] w=0.9317 to align # Constraint # added constraint: constraint((T0310)I27.CB, (T0310)V168.CB) [> 3.5151 = 5.8585 < 7.6160] w=0.9317 to align # Constraint # added constraint: constraint((T0310)R24.CB, (T0310)G137.CA) [> 3.7639 = 6.2731 < 8.1550] w=0.9317 to align # Constraint # added constraint: constraint((T0310)R24.CB, (T0310)A135.CB) [> 3.6708 = 6.1181 < 7.9535] w=0.9317 to align # Constraint # added constraint: constraint((T0310)R24.CB, (T0310)I134.CB) [> 4.0077 = 6.6795 < 8.6833] w=0.9317 to align # Constraint # added constraint: constraint((T0310)G13.CA, (T0310)G139.CA) [> 3.4859 = 5.8099 < 7.5529] w=0.9317 to align # Constraint # added constraint: constraint((T0310)G13.CA, (T0310)V114.CB) [> 4.3360 = 7.2267 < 9.3947] w=0.9317 to align # Constraint # added constraint: constraint((T0310)G13.CA, (T0310)G113.CA) [> 3.8770 = 6.4617 < 8.4002] w=0.9317 to align # Constraint # added constraint: constraint((T0310)G12.CA, (T0310)G139.CA) [> 4.2817 = 7.1362 < 9.2771] w=0.9317 to align # Constraint # added constraint: constraint((T0310)R10.CB, (T0310)V114.CB) [> 3.3307 = 5.5513 < 7.2166] w=0.9317 to align # Constraint # added constraint: constraint((T0310)A9.CB, (T0310)L141.CB) [> 3.3207 = 5.5345 < 7.1949] w=0.9317 to align # Constraint # added constraint: constraint((T0310)A9.CB, (T0310)G139.CA) [> 3.1614 = 5.2690 < 6.8497] w=0.9317 to align # Constraint # added constraint: constraint((T0310)A9.CB, (T0310)V114.CB) [> 2.7204 = 4.5339 < 5.8941] w=0.9317 to align # Constraint # added constraint: constraint((T0310)G6.CA, (T0310)L141.CB) [> 3.4998 = 5.8330 < 7.5829] w=0.9317 to align # Constraint # added constraint: constraint((T0310)G6.CA, (T0310)V114.CB) [> 3.7164 = 6.1939 < 8.0521] w=0.9317 to align # Constraint # added constraint: constraint((T0310)Q5.CB, (T0310)L141.CB) [> 3.2147 = 5.3578 < 6.9652] w=0.9317 to align # Constraint # added constraint: constraint((T0310)I330.CB, (T0310)F341.CB) [> 3.1040 = 5.1734 < 6.7254] w=0.9317 to align # Constraint # added constraint: constraint((T0310)V329.CB, (T0310)W352.CB) [> 4.2969 = 7.1614 < 9.3098] w=0.9317 to align # Constraint # added constraint: constraint((T0310)T327.CB, (T0310)F351.CB) [> 4.2380 = 7.0634 < 9.1824] w=0.9317 to align # Constraint # added constraint: constraint((T0310)T327.CB, (T0310)V350.CB) [> 4.4827 = 7.4711 < 9.7124] w=0.9317 to align # Constraint # added constraint: constraint((T0310)T327.CB, (T0310)C349.CB) [> 2.8519 = 4.7531 < 6.1791] w=0.9317 to align # Constraint # added constraint: constraint((T0310)T327.CB, (T0310)A348.CB) [> 4.1288 = 6.8813 < 8.9457] w=0.9317 to align # Constraint # added constraint: constraint((T0310)T327.CB, (T0310)S347.CB) [> 3.4125 = 5.6874 < 7.3936] w=0.9317 to align # Constraint # added constraint: constraint((T0310)I316.CB, (T0310)F341.CB) [> 3.9179 = 6.5299 < 8.4889] w=0.9317 to align # Constraint # added constraint: constraint((T0310)L295.CB, (T0310)C305.CB) [> 3.4996 = 5.8327 < 7.5825] w=0.9317 to align # Constraint # added constraint: constraint((T0310)R257.CB, (T0310)D310.CB) [> 3.5160 = 5.8601 < 7.6181] w=0.9317 to align # Constraint # added constraint: constraint((T0310)E251.CB, (T0310)C305.CB) [> 3.9865 = 6.6442 < 8.6375] w=0.9317 to align # Constraint # added constraint: constraint((T0310)E251.CB, (T0310)Y299.CB) [> 4.1016 = 6.8360 < 8.8868] w=0.9317 to align # Constraint # added constraint: constraint((T0310)E251.CB, (T0310)E298.CB) [> 4.0268 = 6.7114 < 8.7248] w=0.9317 to align # Constraint # added constraint: constraint((T0310)L250.CB, (T0310)V329.CB) [> 3.6919 = 6.1531 < 7.9991] w=0.9317 to align # Constraint # added constraint: constraint((T0310)N248.CB, (T0310)T327.CB) [> 2.7439 = 4.5732 < 5.9452] w=0.9317 to align # Constraint # added constraint: constraint((T0310)N248.CB, (T0310)H326.CB) [> 3.5315 = 5.8859 < 7.6517] w=0.9317 to align # Constraint # added constraint: constraint((T0310)C219.CB, (T0310)A249.CB) [> 3.8661 = 6.4434 < 8.3764] w=0.9317 to align # Constraint # added constraint: constraint((T0310)C219.CB, (T0310)L250.CB) [> 3.1893 = 5.3156 < 6.9102] w=0.9317 to align # Constraint # added constraint: constraint((T0310)C219.CB, (T0310)E251.CB) [> 3.5923 = 5.9872 < 7.7834] w=0.9317 to align # Constraint # added constraint: constraint((T0310)C219.CB, (T0310)T327.CB) [> 2.4039 = 4.0066 < 5.2085] w=0.9317 to align # Constraint # added constraint: constraint((T0310)M221.CB, (T0310)L250.CB) [> 2.5123 = 4.1872 < 5.4434] w=0.9317 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)F341.CB) [> 4.0013 = 6.6688 < 8.6694] w=0.9317 to align # Constraint # added constraint: constraint((T0310)D224.CB, (T0310)I330.CB) [> 4.3945 = 7.3242 < 9.5215] w=0.9317 to align # Constraint # added constraint: constraint((T0310)E226.CB, (T0310)D334.CB) [> 3.3698 = 5.6163 < 7.3012] w=0.9317 to align # Constraint # added constraint: constraint((T0310)A227.CB, (T0310)E333.CB) [> 3.8384 = 6.3973 < 8.3165] w=0.9317 to align # Constraint # added constraint: constraint((T0310)A227.CB, (T0310)N353.CB) [> 4.5534 = 7.5890 < 9.8658] w=0.9317 to align # Constraint # added constraint: constraint((T0310)S239.CB, (T0310)A249.CB) [> 3.6191 = 6.0318 < 7.8413] w=0.9317 to align # Constraint # added constraint: constraint((T0310)P244.CB, (T0310)G300.CA) [> 3.3988 = 5.6647 < 7.3641] w=0.9317 to align # Constraint # added constraint: constraint((T0310)P244.CB, (T0310)L302.CB) [> 2.1054 = 3.5090 < 4.5617] w=0.9317 to align # Constraint # added constraint: constraint((T0310)A245.CB, (T0310)G300.CA) [> 3.3874 = 5.6456 < 7.3393] w=0.9317 to align # Constraint # added constraint: constraint((T0310)V232.CB, (T0310)V331.CB) [> 2.7480 = 4.5800 < 5.9541] w=0.9172 to align # Constraint # added constraint: constraint((T0310)V223.CB, (T0310)V232.CB) [> 3.1861 = 5.3102 < 6.9033] w=0.9172 to align # Constraint # added constraint: constraint((T0310)Y243.CB, (T0310)D301.CB) [> 4.0497 = 6.7495 < 8.7743] w=0.9151 to align # Constraint # added constraint: constraint((T0310)P192.CB, (T0310)M212.CB) [> 3.8430 = 6.4050 < 8.3265] w=0.9130 to align # Constraint # added constraint: constraint((T0310)A9.CB, (T0310)A171.CB) [> 4.0983 = 6.8305 < 8.8796] w=0.9110 to align # Constraint # added constraint: constraint((T0310)G12.CA, (T0310)A171.CB) [> 3.3562 = 5.5937 < 7.2718] w=0.9110 to align # Constraint # added constraint: constraint((T0310)L35.CB, (T0310)A76.CB) [> 3.4300 = 5.7167 < 7.4317] w=0.9110 to align # Constraint # added constraint: constraint((T0310)I134.CB, (T0310)V172.CB) [> 4.2578 = 7.0963 < 9.2252] w=0.9110 to align # Constraint # added constraint: constraint((T0310)G139.CA, (T0310)V172.CB) [> 3.8195 = 6.3658 < 8.2755] w=0.9110 to align # Constraint # added constraint: constraint((T0310)L140.CB, (T0310)Q173.CB) [> 3.7764 = 6.2939 < 8.1821] w=0.9110 to align # Constraint # added constraint: constraint((T0310)E307.CB, (T0310)H318.CB) [> 4.2453 = 7.0755 < 9.1982] w=0.8923 to align # Constraint # added constraint: constraint((T0310)H220.CB, (T0310)L253.CB) [> 4.5625 = 7.6041 < 9.8853] w=0.8923 to align # Constraint # added constraint: constraint((T0310)I218.CB, (T0310)T252.CB) [> 3.6783 = 6.1304 < 7.9696] w=0.8923 to align # Constraint # added constraint: constraint((T0310)G194.CA, (T0310)H214.CB) [> 3.9934 = 6.6557 < 8.6524] w=0.8923 to align # Constraint # added constraint: constraint((T0310)S225.CB, (T0310)D258.CB) [> 2.7950 = 4.6584 < 6.0559] w=0.8903 to align # Constraint # added constraint: constraint((T0310)I319.CB, (T0310)D328.CB) [> 3.9700 = 6.6167 < 8.6017] w=0.8758 to align # Constraint # added constraint: constraint((T0310)H256.CB, (T0310)D310.CB) [> 4.2899 = 7.1498 < 9.2947] w=0.8758 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)T332.CB) [> 4.5794 = 7.6324 < 9.9221] w=0.8758 to align # Constraint # added constraint: constraint((T0310)M221.CB, (T0310)I330.CB) [> 4.5888 = 7.6481 < 9.9425] w=0.8758 to align # Constraint # added constraint: constraint((T0310)I118.CB, (T0310)G194.CA) [> 4.5761 = 7.6269 < 9.9149] w=0.8758 to align # Constraint # added constraint: constraint((T0310)G194.CA, (T0310)S215.CB) [> 3.9742 = 6.6237 < 8.6108] w=0.8716 to align # Constraint # added constraint: constraint((T0310)G6.CA, (T0310)M186.CB) [> 3.4499 = 5.7499 < 7.4749] w=0.8696 to align # Constraint # added constraint: constraint((T0310)A9.CB, (T0310)L140.CB) [> 4.2287 = 7.0478 < 9.1622] w=0.8696 to align # Constraint # added constraint: constraint((T0310)R10.CB, (T0310)M186.CB) [> 3.3190 = 5.5316 < 7.1911] w=0.8696 to align # Constraint # added constraint: constraint((T0310)L16.CB, (T0310)G137.CA) [> 3.4571 = 5.7618 < 7.4903] w=0.8696 to align # Constraint # added constraint: constraint((T0310)L31.CB, (T0310)T159.CB) [> 3.4049 = 5.6747 < 7.3772] w=0.8696 to align # Constraint # added constraint: constraint((T0310)L35.CB, (T0310)L155.CB) [> 4.4113 = 7.3521 < 9.5578] w=0.8696 to align # Constraint # added constraint: constraint((T0310)L35.CB, (T0310)L158.CB) [> 3.4492 = 5.7488 < 7.4734] w=0.8696 to align # Constraint # added constraint: constraint((T0310)Q38.CB, (T0310)L158.CB) [> 3.8355 = 6.3925 < 8.3103] w=0.8696 to align # Constraint # added constraint: constraint((T0310)P111.CB, (T0310)G139.CA) [> 4.6654 = 7.7757 < 10.1084] w=0.8696 to align # Constraint # added constraint: constraint((T0310)I118.CB, (T0310)G144.CA) [> 4.2311 = 7.0519 < 9.1674] w=0.8696 to align # Constraint # added constraint: constraint((T0310)F119.CB, (T0310)G144.CA) [> 2.8571 = 4.7619 < 6.1905] w=0.8696 to align # Constraint # added constraint: constraint((T0310)F119.CB, (T0310)G145.CA) [> 3.5614 = 5.9357 < 7.7164] w=0.8696 to align # Constraint # added constraint: constraint((T0310)T332.CB, (T0310)W352.CB) [> 4.3585 = 7.2642 < 9.4435] w=0.8696 to align # Constraint # added constraint: constraint((T0310)V312.CB, (T0310)T337.CB) [> 3.6114 = 6.0191 < 7.8248] w=0.8696 to align # Constraint # added constraint: constraint((T0310)R296.CB, (T0310)Y322.CB) [> 4.1729 = 6.9549 < 9.0414] w=0.8696 to align # Constraint # added constraint: constraint((T0310)R257.CB, (T0310)V309.CB) [> 4.1411 = 6.9018 < 8.9723] w=0.8696 to align # Constraint # added constraint: constraint((T0310)T252.CB, (T0310)L295.CB) [> 3.9130 = 6.5216 < 8.4781] w=0.8696 to align # Constraint # added constraint: constraint((T0310)C247.CB, (T0310)H326.CB) [> 3.6177 = 6.0296 < 7.8385] w=0.8696 to align # Constraint # added constraint: constraint((T0310)P244.CB, (T0310)E303.CB) [> 3.9318 = 6.5529 < 8.5188] w=0.8696 to align # Constraint # added constraint: constraint((T0310)M221.CB, (T0310)D328.CB) [> 4.4368 = 7.3947 < 9.6131] w=0.8696 to align # Constraint # added constraint: constraint((T0310)H220.CB, (T0310)L250.CB) [> 4.3039 = 7.1731 < 9.3251] w=0.8696 to align # Constraint # added constraint: constraint((T0310)I218.CB, (T0310)E251.CB) [> 2.9888 = 4.9813 < 6.4757] w=0.8696 to align # Constraint # added constraint: constraint((T0310)G217.CA, (T0310)E298.CB) [> 3.1721 = 5.2869 < 6.8730] w=0.8696 to align # Constraint # added constraint: constraint((T0310)S195.CB, (T0310)S215.CB) [> 4.1072 = 6.8454 < 8.8990] w=0.8696 to align # Constraint # added constraint: constraint((T0310)R193.CB, (T0310)G213.CA) [> 3.6759 = 6.1264 < 7.9644] w=0.8696 to align # Constraint # added constraint: constraint((T0310)L142.CB, (T0310)N152.CB) [> 4.1193 = 6.8655 < 8.9252] w=0.8696 to align # Constraint # added constraint: constraint((T0310)V114.CB, (T0310)L140.CB) [> 4.5562 = 7.5936 < 9.8717] w=0.8696 to align # Constraint # added constraint: constraint((T0310)M221.CB, (T0310)L235.CB) [> 3.7905 = 6.3175 < 8.2127] w=0.8551 to align # Constraint # added constraint: constraint((T0310)R96.CB, (T0310)L105.CB) [> 3.7422 = 6.2370 < 8.1081] w=0.8551 to align # Constraint # added constraint: constraint((T0310)I28.CB, (T0310)A83.CB) [> 2.8460 = 4.7433 < 6.1663] w=0.8489 to align # Constraint # added constraint: constraint((T0310)K231.CB, (T0310)V331.CB) [> 4.2917 = 7.1528 < 9.2986] w=0.8344 to align # Constraint # added constraint: constraint((T0310)K143.CB, (T0310)V175.CB) [> 3.4792 = 5.7986 < 7.5381] w=0.8302 to align # Constraint # added constraint: constraint((T0310)L260.CB, (T0310)V308.CB) [> 3.0928 = 5.1546 < 6.7010] w=0.8302 to align # Constraint # added constraint: constraint((T0310)I316.CB, (T0310)V345.CB) [> 3.9838 = 6.6396 < 8.6315] w=0.8302 to align # Constraint # added constraint: constraint((T0310)H320.CB, (T0310)V345.CB) [> 4.0989 = 6.8315 < 8.8809] w=0.8302 to align # Constraint # added constraint: constraint((T0310)G12.CA, (T0310)E170.CB) [> 3.3310 = 5.5517 < 7.2172] w=0.8282 to align # Constraint # added constraint: constraint((T0310)M8.CB, (T0310)E170.CB) [> 2.8028 = 4.6713 < 6.0727] w=0.8282 to align # Constraint # added constraint: constraint((T0310)A133.CB, (T0310)I191.CB) [> 4.2935 = 7.1558 < 9.3026] w=0.8137 to align # Constraint # added constraint: constraint((T0310)V117.CB, (T0310)P192.CB) [> 4.4697 = 7.4495 < 9.6844] w=0.8137 to align # Constraint # added constraint: constraint((T0310)H256.CB, (T0310)V308.CB) [> 4.5677 = 7.6129 < 9.8967] w=0.8137 to align # Constraint # added constraint: constraint((T0310)S228.CB, (T0310)V331.CB) [> 4.5125 = 7.5208 < 9.7771] w=0.8137 to align # Constraint # added constraint: constraint((T0310)H320.CB, (T0310)D346.CB) [> 3.1425 = 5.2375 < 6.8087] w=0.8137 to align # Constraint # added constraint: constraint((T0310)A25.CB, (T0310)A135.CB) [> 4.2756 = 7.1260 < 9.2638] w=0.8075 to align # Constraint # added constraint: constraint((T0310)H30.CB, (T0310)A162.CB) [> 2.5483 = 4.2472 < 5.5214] w=0.8075 to align # Constraint # added constraint: constraint((T0310)L31.CB, (T0310)L158.CB) [> 3.4871 = 5.8117 < 7.5553] w=0.8075 to align # Constraint # added constraint: constraint((T0310)L31.CB, (T0310)A162.CB) [> 2.6295 = 4.3826 < 5.6974] w=0.8075 to align # Constraint # added constraint: constraint((T0310)L34.CB, (T0310)A162.CB) [> 3.3305 = 5.5509 < 7.2161] w=0.8075 to align # Constraint # added constraint: constraint((T0310)G113.CA, (T0310)G137.CA) [> 4.6625 = 7.7708 < 10.1020] w=0.8075 to align # Constraint # added constraint: constraint((T0310)I118.CB, (T0310)I202.CB) [> 4.3282 = 7.2137 < 9.3778] w=0.8075 to align # Constraint # added constraint: constraint((T0310)F119.CB, (T0310)N152.CB) [> 4.2502 = 7.0837 < 9.2088] w=0.8075 to align # Constraint # added constraint: constraint((T0310)G217.CA, (T0310)S324.CB) [> 2.7783 = 4.6305 < 6.0197] w=0.8075 to align # Constraint # added constraint: constraint((T0310)A338.CB, (T0310)W352.CB) [> 2.9957 = 4.9928 < 6.4907] w=0.8075 to align # Constraint # added constraint: constraint((T0310)S294.CB, (T0310)C305.CB) [> 3.2000 = 5.3334 < 6.9334] w=0.8075 to align # Constraint # added constraint: constraint((T0310)V229.CB, (T0310)L259.CB) [> 4.0206 = 6.7009 < 8.7112] w=0.8075 to align # Constraint # added constraint: constraint((T0310)S228.CB, (T0310)E333.CB) [> 4.1950 = 6.9917 < 9.0892] w=0.8075 to align # Constraint # added constraint: constraint((T0310)S225.CB, (T0310)L259.CB) [> 3.1014 = 5.1691 < 6.7198] w=0.8075 to align # Constraint # added constraint: constraint((T0310)V223.CB, (T0310)L259.CB) [> 3.7950 = 6.3249 < 8.2224] w=0.8075 to align # Constraint # added constraint: constraint((T0310)C219.CB, (T0310)S347.CB) [> 4.2937 = 7.1562 < 9.3030] w=0.8075 to align # Constraint # added constraint: constraint((T0310)E251.CB, (T0310)L304.CB) [> 3.9572 = 6.5953 < 8.5739] w=0.8075 to align # Constraint # added constraint: constraint((T0310)A249.CB, (T0310)G300.CA) [> 4.1833 = 6.9722 < 9.0639] w=0.8075 to align # Constraint # added constraint: constraint((T0310)D224.CB, (T0310)T337.CB) [> 3.8057 = 6.3429 < 8.2457] w=0.8075 to align # Constraint # added constraint: constraint((T0310)I218.CB, (T0310)T297.CB) [> 4.4886 = 7.4810 < 9.7253] w=0.8075 to align # Constraint # added constraint: constraint((T0310)L141.CB, (T0310)V175.CB) [> 4.0314 = 6.7190 < 8.7348] w=0.7868 to align # Constraint # added constraint: constraint((T0310)G139.CA, (T0310)A171.CB) [> 3.4088 = 5.6814 < 7.3858] w=0.7868 to align # Constraint # added constraint: constraint((T0310)I28.CB, (T0310)R80.CB) [> 3.9266 = 6.5443 < 8.5076] w=0.7868 to align # Constraint # added constraint: constraint((T0310)I190.CB, (T0310)M212.CB) [> 4.4219 = 7.3699 < 9.5809] w=0.7702 to align # Constraint # added constraint: constraint((T0310)H220.CB, (T0310)Y322.CB) [> 4.3626 = 7.2710 < 9.4523] w=0.7681 to align # Constraint # added constraint: constraint((T0310)V236.CB, (T0310)M271.CB) [> 3.2123 = 5.3538 < 6.9600] w=0.7681 to align # Constraint # added constraint: constraint((T0310)G144.CA, (T0310)N176.CB) [> 4.1130 = 6.8551 < 8.9116] w=0.7681 to align # Constraint # added constraint: constraint((T0310)S86.CB, (T0310)A135.CB) [> 2.7831 = 4.6385 < 6.0300] w=0.7660 to align # Constraint # added constraint: constraint((T0310)Q5.CB, (T0310)V175.CB) [> 3.7390 = 6.2317 < 8.1012] w=0.7660 to align # Constraint # added constraint: constraint((T0310)L235.CB, (T0310)L250.CB) [> 3.8327 = 6.3878 < 8.3042] w=0.7660 to align # Constraint # added constraint: constraint((T0310)A25.CB, (T0310)A84.CB) [> 3.6941 = 6.1569 < 8.0040] w=0.7660 to align # Constraint # added constraint: constraint((T0310)D124.CB, (T0310)S151.CB) [> 2.9597 = 4.9328 < 6.4126] w=0.7495 to align # Constraint # added constraint: constraint((T0310)G6.CA, (T0310)I187.CB) [> 4.2733 = 7.1221 < 9.2587] w=0.7453 to align # Constraint # added constraint: constraint((T0310)I27.CB, (T0310)A162.CB) [> 3.4597 = 5.7663 < 7.4961] w=0.7453 to align # Constraint # added constraint: constraint((T0310)G217.CA, (T0310)C247.CB) [> 3.5875 = 5.9791 < 7.7729] w=0.7453 to align # Constraint # added constraint: constraint((T0310)I330.CB, (T0310)L342.CB) [> 4.1179 = 6.8631 < 8.9221] w=0.7453 to align # Constraint # added constraint: constraint((T0310)H29.CB, (T0310)R80.CB) [> 3.7750 = 6.2917 < 8.1793] w=0.7453 to align # Constraint # added constraint: constraint((T0310)G217.CA, (T0310)E251.CB) [> 4.2996 = 7.1660 < 9.3158] w=0.7453 to align # Constraint # added constraint: constraint((T0310)L342.CB, (T0310)W352.CB) [> 4.0356 = 6.7260 < 8.7438] w=0.7453 to align # Constraint # added constraint: constraint((T0310)S325.CB, (T0310)D346.CB) [> 3.0620 = 5.1033 < 6.6343] w=0.7453 to align # Constraint # added constraint: constraint((T0310)E298.CB, (T0310)S324.CB) [> 4.4024 = 7.3373 < 9.5385] w=0.7453 to align # Constraint # added constraint: constraint((T0310)L295.CB, (T0310)E307.CB) [> 4.1255 = 6.8759 < 8.9386] w=0.7453 to align # Constraint # added constraint: constraint((T0310)K231.CB, (T0310)N353.CB) [> 4.0074 = 6.6790 < 8.6826] w=0.7453 to align # Constraint # added constraint: constraint((T0310)V223.CB, (T0310)H256.CB) [> 3.8863 = 6.4773 < 8.4204] w=0.7453 to align # Constraint # added constraint: constraint((T0310)I218.CB, (T0310)Y322.CB) [> 3.3806 = 5.6343 < 7.3246] w=0.7453 to align # Constraint # added constraint: constraint((T0310)T109.CB, (T0310)S136.CB) [> 4.4340 = 7.3901 < 9.6071] w=0.7453 to align # Constraint # added constraint: constraint((T0310)L43.CB, (T0310)L72.CB) [> 3.5839 = 5.9731 < 7.7650] w=0.7453 to align # Constraint # added constraint: constraint((T0310)R92.CB, (T0310)Q107.CB) [> 3.4523 = 5.7538 < 7.4800] w=0.7308 to align # Constraint # added constraint: constraint((T0310)K143.CB, (T0310)T177.CB) [> 3.7292 = 6.2154 < 8.0801] w=0.7288 to align # Constraint # added constraint: constraint((T0310)A25.CB, (T0310)A83.CB) [> 2.9030 = 4.8383 < 6.2898] w=0.7246 to align # Constraint # added constraint: constraint((T0310)I28.CB, (T0310)L79.CB) [> 3.3165 = 5.5275 < 7.1858] w=0.7246 to align # Constraint # added constraint: constraint((T0310)L35.CB, (T0310)L72.CB) [> 3.9279 = 6.5466 < 8.5105] w=0.7246 to align # Constraint # added constraint: constraint((T0310)T159.CB, (T0310)V172.CB) [> 3.3023 = 5.5038 < 7.1549] w=0.7246 to align # Constraint # added constraint: constraint((T0310)T159.CB, (T0310)V168.CB) [> 3.0241 = 5.0402 < 6.5522] w=0.7246 to align # Constraint # added constraint: constraint((T0310)T233.CB, (T0310)M271.CB) [> 3.4594 = 5.7657 < 7.4954] w=0.7101 to align # Constraint # added constraint: constraint((T0310)L94.CB, (T0310)Q107.CB) [> 3.4782 = 5.7969 < 7.5360] w=0.7081 to align # Constraint # added constraint: constraint((T0310)V223.CB, (T0310)L264.CB) [> 3.8134 = 6.3557 < 8.2624] w=0.7081 to align # Constraint # added constraint: constraint((T0310)V199.CB, (T0310)H214.CB) [> 3.8302 = 6.3837 < 8.2988] w=0.7060 to align # Constraint # added constraint: constraint((T0310)V2.CB, (T0310)D184.CB) [> 4.0482 = 6.7469 < 8.7710] w=0.7039 to align # Constraint # added constraint: constraint((T0310)I82.CB, (T0310)A135.CB) [> 2.9771 = 4.9619 < 6.4504] w=0.7039 to align # Constraint # added constraint: constraint((T0310)P21.CB, (T0310)Q87.CB) [> 2.8635 = 4.7725 < 6.2043] w=0.7039 to align # Constraint # added constraint: constraint((T0310)D124.CB, (T0310)N152.CB) [> 3.8608 = 6.4347 < 8.3651] w=0.7039 to align # Constraint # added constraint: constraint((T0310)L16.CB, (T0310)A171.CB) [> 3.3616 = 5.6027 < 7.2836] w=0.7039 to align # Constraint # added constraint: constraint((T0310)G12.CA, (T0310)K169.CB) [> 3.9167 = 6.5279 < 8.4863] w=0.7039 to align # Constraint # added constraint: constraint((T0310)I330.CB, (T0310)V345.CB) [> 4.4478 = 7.4130 < 9.6369] w=0.7039 to align # Constraint # added constraint: constraint((T0310)V114.CB, (T0310)L189.CB) [> 4.5460 = 7.5766 < 9.8496] w=0.6894 to align # Constraint # added constraint: constraint((T0310)L140.CB, (T0310)A171.CB) [> 4.2752 = 7.1253 < 9.2628] w=0.6894 to align # Constraint # added constraint: constraint((T0310)V117.CB, (T0310)I190.CB) [> 4.5540 = 7.5900 < 9.8670] w=0.6894 to align # Constraint # added constraint: constraint((T0310)I191.CB, (T0310)V211.CB) [> 4.6047 = 7.6744 < 9.9767] w=0.6874 to align # Constraint # added constraint: constraint((T0310)L105.CB, (T0310)W393.CB) [> 3.8047 = 6.3411 < 8.2435] w=0.6853 to align # Constraint # added constraint: constraint((T0310)Q107.CB, (T0310)T391.CB) [> 3.2194 = 5.3657 < 6.9754] w=0.6853 to align # Constraint # added constraint: constraint((T0310)Q107.CB, (T0310)K392.CB) [> 3.9567 = 6.5946 < 8.5729] w=0.6853 to align # Constraint # added constraint: constraint((T0310)Q107.CB, (T0310)W393.CB) [> 3.2626 = 5.4377 < 7.0690] w=0.6853 to align # Constraint # added constraint: constraint((T0310)V110.CB, (T0310)L389.CB) [> 3.8703 = 6.4504 < 8.3856] w=0.6853 to align # Constraint # added constraint: constraint((T0310)I112.CB, (T0310)L389.CB) [> 3.9199 = 6.5332 < 8.4931] w=0.6853 to align # Constraint # added constraint: constraint((T0310)S136.CB, (T0310)L389.CB) [> 3.0895 = 5.1491 < 6.6939] w=0.6853 to align # Constraint # added constraint: constraint((T0310)L75.CB, (T0310)L126.CB) [> 3.5273 = 5.8789 < 7.6426] w=0.6853 to align # Constraint # added constraint: constraint((T0310)G13.CA, (T0310)P111.CB) [> 4.6177 = 7.6962 < 10.0050] w=0.6832 to align # Constraint # added constraint: constraint((T0310)N138.CB, (T0310)D188.CB) [> 4.5524 = 7.5873 < 9.8635] w=0.6832 to align # Constraint # added constraint: constraint((T0310)I27.CB, (T0310)I134.CB) [> 4.3098 = 7.1830 < 9.3379] w=0.6832 to align # Constraint # added constraint: constraint((T0310)Q38.CB, (T0310)I154.CB) [> 4.3106 = 7.1843 < 9.3396] w=0.6832 to align # Constraint # added constraint: constraint((T0310)A45.CB, (T0310)S151.CB) [> 3.2283 = 5.3805 < 6.9946] w=0.6832 to align # Constraint # added constraint: constraint((T0310)A45.CB, (T0310)I154.CB) [> 3.6357 = 6.0595 < 7.8774] w=0.6832 to align # Constraint # added constraint: constraint((T0310)N46.CB, (T0310)S151.CB) [> 3.0675 = 5.1126 < 6.6464] w=0.6832 to align # Constraint # added constraint: constraint((T0310)P244.CB, (T0310)Y299.CB) [> 4.3162 = 7.1936 < 9.3517] w=0.6832 to align # Constraint # added constraint: constraint((T0310)V331.CB, (T0310)W352.CB) [> 4.5251 = 7.5418 < 9.8043] w=0.6832 to align # Constraint # added constraint: constraint((T0310)E120.CB, (T0310)G145.CA) [> 4.0821 = 6.8035 < 8.8446] w=0.6832 to align # Constraint # added constraint: constraint((T0310)S294.CB, (T0310)E303.CB) [> 4.2025 = 7.0042 < 9.1054] w=0.6832 to align # Constraint # added constraint: constraint((T0310)K240.CB, (T0310)L304.CB) [> 4.1933 = 6.9889 < 9.0855] w=0.6832 to align # Constraint # added constraint: constraint((T0310)A227.CB, (T0310)L259.CB) [> 4.1471 = 6.9118 < 8.9853] w=0.6832 to align # Constraint # added constraint: constraint((T0310)G217.CA, (T0310)T327.CB) [> 4.3809 = 7.3015 < 9.4920] w=0.6832 to align # Constraint # added constraint: constraint((T0310)L142.CB, (T0310)V172.CB) [> 4.1380 = 6.8967 < 8.9657] w=0.6687 to align # Constraint # added constraint: constraint((T0310)V117.CB, (T0310)A130.CB) [> 3.7620 = 6.2701 < 8.1511] w=0.6667 to align # Constraint # added constraint: constraint((T0310)L72.CB, (T0310)C125.CB) [> 3.7049 = 6.1748 < 8.0272] w=0.6646 to align # Constraint # added constraint: constraint((T0310)L105.CB, (T0310)L394.CB) [> 4.1561 = 6.9268 < 9.0049] w=0.6646 to align # Constraint # added constraint: constraint((T0310)I112.CB, (T0310)L388.CB) [> 3.6276 = 6.0460 < 7.8598] w=0.6646 to align # Constraint # added constraint: constraint((T0310)L235.CB, (T0310)L253.CB) [> 3.7397 = 6.2328 < 8.1026] w=0.6646 to align # Constraint # added constraint: constraint((T0310)I268.CB, (T0310)I306.CB) [> 4.3312 = 7.2187 < 9.3843] w=0.6646 to align # Constraint # added constraint: constraint((T0310)L132.CB, (T0310)L388.CB) [> 3.3906 = 5.6510 < 7.3463] w=0.6646 to align # Constraint # added constraint: constraint((T0310)I28.CB, (T0310)A131.CB) [> 3.8606 = 6.4344 < 8.3647] w=0.6625 to align # Constraint # added constraint: constraint((T0310)L50.CB, (T0310)A148.CB) [> 3.4553 = 5.7588 < 7.4864] w=0.6625 to align # Constraint # added constraint: constraint((T0310)A130.CB, (T0310)L140.CB) [> 3.2664 = 5.4441 < 7.0773] w=0.6625 to align # Constraint # added constraint: constraint((T0310)A130.CB, (T0310)L142.CB) [> 3.9799 = 6.6332 < 8.6232] w=0.6625 to align # Constraint # added constraint: constraint((T0310)A9.CB, (T0310)Q173.CB) [> 3.5656 = 5.9427 < 7.7255] w=0.6625 to align # Constraint # added constraint: constraint((T0310)H156.CB, (T0310)L174.CB) [> 2.8437 = 4.7395 < 6.1614] w=0.6625 to align # Constraint # added constraint: constraint((T0310)L116.CB, (T0310)V181.CB) [> 3.1233 = 5.2055 < 6.7671] w=0.6625 to align # Constraint # added constraint: constraint((T0310)L141.CB, (T0310)L174.CB) [> 3.8271 = 6.3785 < 8.2920] w=0.6625 to align # Constraint # added constraint: constraint((T0310)K143.CB, (T0310)N176.CB) [> 3.8035 = 6.3392 < 8.2410] w=0.6625 to align # Constraint # added constraint: constraint((T0310)G13.CA, (T0310)A171.CB) [> 4.1913 = 6.9855 < 9.0812] w=0.6625 to align # Constraint # added constraint: constraint((T0310)P192.CB, (T0310)H214.CB) [> 4.3713 = 7.2856 < 9.4712] w=0.6625 to align # Constraint # added constraint: constraint((T0310)S121.CB, (T0310)A148.CB) [> 3.1797 = 5.2995 < 6.8894] w=0.6625 to align # Constraint # added constraint: constraint((T0310)T233.CB, (T0310)I268.CB) [> 3.1893 = 5.3155 < 6.9102] w=0.6460 to align # Constraint # added constraint: constraint((T0310)C125.CB, (T0310)S151.CB) [> 3.1256 = 5.2094 < 6.7722] w=0.6460 to align # Constraint # added constraint: constraint((T0310)I191.CB, (T0310)G213.CA) [> 4.2835 = 7.1392 < 9.2809] w=0.6439 to align # Constraint # added constraint: constraint((T0310)T109.CB, (T0310)T391.CB) [> 3.6062 = 6.0103 < 7.8134] w=0.6439 to align # Constraint # added constraint: constraint((T0310)V110.CB, (T0310)T390.CB) [> 3.2942 = 5.4903 < 7.1374] w=0.6439 to align # Constraint # added constraint: constraint((T0310)V110.CB, (T0310)K392.CB) [> 3.3936 = 5.6561 < 7.3529] w=0.6439 to align # Constraint # added constraint: constraint((T0310)P111.CB, (T0310)L389.CB) [> 3.8282 = 6.3803 < 8.2943] w=0.6439 to align # Constraint # added constraint: constraint((T0310)V236.CB, (T0310)I268.CB) [> 3.7156 = 6.1926 < 8.0504] w=0.6439 to align # Constraint # added constraint: constraint((T0310)F265.CB, (T0310)I306.CB) [> 3.6278 = 6.0464 < 7.8603] w=0.6439 to align # Constraint # added constraint: constraint((T0310)L50.CB, (T0310)S151.CB) [> 4.0499 = 6.7498 < 8.7748] w=0.6418 to align # Constraint # added constraint: constraint((T0310)P21.CB, (T0310)S86.CB) [> 3.3195 = 5.5325 < 7.1922] w=0.6418 to align # Constraint # added constraint: constraint((T0310)A9.CB, (T0310)E170.CB) [> 3.3810 = 5.6350 < 7.3255] w=0.6418 to align # Constraint # added constraint: constraint((T0310)L35.CB, (T0310)L79.CB) [> 4.3632 = 7.2720 < 9.4537] w=0.6418 to align # Constraint # added constraint: constraint((T0310)T36.CB, (T0310)A76.CB) [> 3.4469 = 5.7449 < 7.4683] w=0.6418 to align # Constraint # added constraint: constraint((T0310)A45.CB, (T0310)H150.CB) [> 3.2133 = 5.3555 < 6.9621] w=0.6418 to align # Constraint # added constraint: constraint((T0310)E182.CB, (T0310)A205.CB) [> 3.2952 = 5.4921 < 7.1397] w=0.6418 to align # Constraint # added constraint: constraint((T0310)I190.CB, (T0310)A206.CB) [> 3.4665 = 5.7775 < 7.5107] w=0.6418 to align # Constraint # added constraint: constraint((T0310)N248.CB, (T0310)T356.CB) [> 3.3667 = 5.6112 < 7.2946] w=0.6418 to align # Constraint # added constraint: constraint((T0310)V329.CB, (T0310)A354.CB) [> 4.2225 = 7.0375 < 9.1488] w=0.6418 to align # Constraint # added constraint: constraint((T0310)V329.CB, (T0310)S355.CB) [> 3.5084 = 5.8473 < 7.6015] w=0.6418 to align # Constraint # added constraint: constraint((T0310)L264.CB, (T0310)I306.CB) [> 4.1238 = 6.8731 < 8.9350] w=0.6418 to align # Constraint # added constraint: constraint((T0310)P127.CB, (T0310)R193.CB) [> 3.5402 = 5.9003 < 7.6704] w=0.6418 to align # Constraint # added constraint: constraint((T0310)I112.CB, (T0310)S136.CB) [> 4.5705 = 7.6175 < 9.9028] w=0.6273 to align # Constraint # added constraint: constraint((T0310)H256.CB, (T0310)N311.CB) [> 3.9555 = 6.5924 < 8.5701] w=0.6273 to align # Constraint # added constraint: constraint((T0310)L79.CB, (T0310)A131.CB) [> 2.9983 = 4.9971 < 6.4962] w=0.6253 to align # Constraint # added constraint: constraint((T0310)V232.CB, (T0310)L264.CB) [> 3.9634 = 6.6056 < 8.5872] w=0.6253 to align # Constraint # added constraint: constraint((T0310)V93.CB, (T0310)Q107.CB) [> 4.1070 = 6.8451 < 8.8986] w=0.6232 to align # Constraint # added constraint: constraint((T0310)G144.CA, (T0310)V175.CB) [> 4.2845 = 7.1409 < 9.2831] w=0.6232 to align # Constraint # added constraint: constraint((T0310)Q107.CB, (T0310)L394.CB) [> 4.4568 = 7.4281 < 9.6565] w=0.6232 to align # Constraint # added constraint: constraint((T0310)V108.CB, (T0310)L394.CB) [> 4.1249 = 6.8749 < 8.9373] w=0.6232 to align # Constraint # added constraint: constraint((T0310)L115.CB, (T0310)L388.CB) [> 3.8794 = 6.4657 < 8.4054] w=0.6232 to align # Constraint # added constraint: constraint((T0310)L132.CB, (T0310)G384.CA) [> 3.0986 = 5.1644 < 6.7137] w=0.6232 to align # Constraint # added constraint: constraint((T0310)L132.CB, (T0310)L385.CB) [> 3.2821 = 5.4701 < 7.1112] w=0.6232 to align # Constraint # added constraint: constraint((T0310)A133.CB, (T0310)L388.CB) [> 3.0620 = 5.1034 < 6.6344] w=0.6232 to align # Constraint # added constraint: constraint((T0310)S136.CB, (T0310)L385.CB) [> 3.3498 = 5.5830 < 7.2579] w=0.6232 to align # Constraint # added constraint: constraint((T0310)N138.CB, (T0310)L388.CB) [> 3.3565 = 5.5941 < 7.2723] w=0.6232 to align # Constraint # added constraint: constraint((T0310)F119.CB, (T0310)Q128.CB) [> 3.0440 = 5.0734 < 6.5954] w=0.6232 to align # Constraint # added constraint: constraint((T0310)G6.CA, (T0310)Q173.CB) [> 4.2392 = 7.0653 < 9.1849] w=0.6211 to align # Constraint # added constraint: constraint((T0310)Q5.CB, (T0310)Q173.CB) [> 2.6294 = 4.3823 < 5.6970] w=0.6211 to align # Constraint # added constraint: constraint((T0310)V2.CB, (T0310)V175.CB) [> 3.7421 = 6.2368 < 8.1078] w=0.6211 to align # Constraint # added constraint: constraint((T0310)L250.CB, (T0310)L304.CB) [> 4.1373 = 6.8955 < 8.9642] w=0.6211 to align # Constraint # added constraint: constraint((T0310)H220.CB, (T0310)E251.CB) [> 4.5159 = 7.5265 < 9.7844] w=0.6211 to align # Constraint # added constraint: constraint((T0310)R193.CB, (T0310)C247.CB) [> 4.6329 = 7.7215 < 10.0380] w=0.6211 to align # Constraint # added constraint: constraint((T0310)S239.CB, (T0310)E251.CB) [> 4.1993 = 6.9989 < 9.0985] w=0.6211 to align # Constraint # added constraint: constraint((T0310)H220.CB, (T0310)V345.CB) [> 4.6205 = 7.7009 < 10.0111] w=0.6211 to align # Constraint # added constraint: constraint((T0310)L19.CB, (T0310)G137.CA) [> 4.4213 = 7.3688 < 9.5794] w=0.6211 to align # Constraint # added constraint: constraint((T0310)G13.CA, (T0310)G137.CA) [> 4.4854 = 7.4756 < 9.7183] w=0.6211 to align # Constraint # added constraint: constraint((T0310)F341.CB, (T0310)V350.CB) [> 4.4247 = 7.3745 < 9.5869] w=0.6211 to align # Constraint # added constraint: constraint((T0310)L260.CB, (T0310)I306.CB) [> 4.4717 = 7.4528 < 9.6886] w=0.6211 to align # Constraint # added constraint: constraint((T0310)L254.CB, (T0310)V308.CB) [> 4.6745 = 7.7908 < 10.1281] w=0.6211 to align # Constraint # added constraint: constraint((T0310)T252.CB, (T0310)I319.CB) [> 4.5823 = 7.6372 < 9.9283] w=0.6211 to align # Constraint # added constraint: constraint((T0310)E251.CB, (T0310)G300.CA) [> 4.5090 = 7.5149 < 9.7694] w=0.6211 to align # Constraint # added constraint: constraint((T0310)N248.CB, (T0310)C349.CB) [> 4.1549 = 6.9248 < 9.0022] w=0.6211 to align # Constraint # added constraint: constraint((T0310)A246.CB, (T0310)G300.CA) [> 4.6170 = 7.6950 < 10.0035] w=0.6211 to align # Constraint # added constraint: constraint((T0310)R122.CB, (T0310)A246.CB) [> 3.9321 = 6.5534 < 8.5195] w=0.6211 to align # Constraint # added constraint: constraint((T0310)N46.CB, (T0310)D124.CB) [> 3.9184 = 6.5306 < 8.4898] w=0.6211 to align # Constraint # added constraint: constraint((T0310)M8.CB, (T0310)Q173.CB) [> 3.7963 = 6.3272 < 8.2253] w=0.6211 to align # Constraint # added constraint: constraint((T0310)V229.CB, (T0310)Q267.CB) [> 3.7517 = 6.2529 < 8.1288] w=0.6066 to align # Constraint # added constraint: constraint((T0310)D124.CB, (T0310)A148.CB) [> 2.4257 = 4.0428 < 5.2556] w=0.6025 to align # Constraint # added constraint: constraint((T0310)R24.CB, (T0310)S86.CB) [> 3.4994 = 5.8324 < 7.5821] w=0.6004 to align # Constraint # added constraint: constraint((T0310)L31.CB, (T0310)L79.CB) [> 3.4412 = 5.7354 < 7.4559] w=0.6004 to align # Constraint # added constraint: constraint((T0310)L35.CB, (T0310)L75.CB) [> 3.7038 = 6.1729 < 8.0248] w=0.6004 to align # Constraint # added constraint: constraint((T0310)R39.CB, (T0310)L72.CB) [> 3.0874 = 5.1457 < 6.6894] w=0.6004 to align # Constraint # added constraint: constraint((T0310)G213.CA, (T0310)S373.CB) [> 3.1779 = 5.2965 < 6.8855] w=0.6004 to align # Constraint # added constraint: constraint((T0310)D238.CB, (T0310)S355.CB) [> 2.7283 = 4.5472 < 5.9114] w=0.6004 to align # Constraint # added constraint: constraint((T0310)A348.CB, (T0310)G367.CA) [> 2.9725 = 4.9542 < 6.4404] w=0.6004 to align # Constraint # added constraint: constraint((T0310)L43.CB, (T0310)S68.CB) [> 2.8321 = 4.7202 < 6.1363] w=0.6004 to align # Constraint # added constraint: constraint((T0310)S121.CB, (T0310)E147.CB) [> 2.7616 = 4.6027 < 5.9835] w=0.6004 to align # Constraint # added constraint: constraint((T0310)L235.CB, (T0310)V331.CB) [> 4.4014 = 7.3356 < 9.5363] w=0.5839 to align # Constraint # added constraint: constraint((T0310)V229.CB, (T0310)L264.CB) [> 3.5805 = 5.9674 < 7.7576] w=0.5839 to align # Constraint # added constraint: constraint((T0310)V236.CB, (T0310)L272.CB) [> 3.8708 = 6.4514 < 8.3868] w=0.5839 to align # Constraint # added constraint: constraint((T0310)L94.CB, (T0310)E106.CB) [> 3.7070 = 6.1784 < 8.0319] w=0.5839 to align # Constraint # added constraint: constraint((T0310)T252.CB, (T0310)L304.CB) [> 4.4048 = 7.3414 < 9.5438] w=0.5818 to align # Constraint # added constraint: constraint((T0310)L94.CB, (T0310)L105.CB) [> 3.2657 = 5.4428 < 7.0756] w=0.5818 to align # Constraint # added constraint: constraint((T0310)E3.CB, (T0310)D184.CB) [> 4.3850 = 7.3083 < 9.5008] w=0.5797 to align # Constraint # added constraint: constraint((T0310)G194.CA, (T0310)G213.CA) [> 4.2999 = 7.1665 < 9.3164] w=0.5797 to align # Constraint # added constraint: constraint((T0310)E104.CB, (T0310)L395.CB) [> 4.3323 = 7.2204 < 9.3866] w=0.5797 to align # Constraint # added constraint: constraint((T0310)L105.CB, (T0310)L395.CB) [> 3.0592 = 5.0986 < 6.6282] w=0.5797 to align # Constraint # added constraint: constraint((T0310)I28.CB, (T0310)I82.CB) [> 3.7475 = 6.2458 < 8.1196] w=0.5797 to align # Constraint # added constraint: constraint((T0310)A32.CB, (T0310)A83.CB) [> 4.1660 = 6.9433 < 9.0263] w=0.5797 to align # Constraint # added constraint: constraint((T0310)I42.CB, (T0310)C125.CB) [> 3.8965 = 6.4942 < 8.4424] w=0.5797 to align # Constraint # added constraint: constraint((T0310)N46.CB, (T0310)C125.CB) [> 3.6962 = 6.1604 < 8.0085] w=0.5797 to align # Constraint # added constraint: constraint((T0310)L50.CB, (T0310)S121.CB) [> 4.0879 = 6.8132 < 8.8572] w=0.5797 to align # Constraint # added constraint: constraint((T0310)R122.CB, (T0310)A245.CB) [> 2.7561 = 4.5935 < 5.9715] w=0.5797 to align # Constraint # added constraint: constraint((T0310)C125.CB, (T0310)L155.CB) [> 3.9043 = 6.5072 < 8.4593] w=0.5797 to align # Constraint # added constraint: constraint((T0310)I134.CB, (T0310)A171.CB) [> 4.1772 = 6.9621 < 9.0507] w=0.5797 to align # Constraint # added constraint: constraint((T0310)K146.CB, (T0310)T177.CB) [> 4.2093 = 7.0156 < 9.1202] w=0.5797 to align # Constraint # added constraint: constraint((T0310)N152.CB, (T0310)L174.CB) [> 3.6883 = 6.1472 < 7.9913] w=0.5797 to align # Constraint # added constraint: constraint((T0310)S195.CB, (T0310)E216.CB) [> 3.8909 = 6.4849 < 8.4303] w=0.5797 to align # Constraint # added constraint: constraint((T0310)H214.CB, (T0310)G365.CA) [> 3.2174 = 5.3624 < 6.9711] w=0.5797 to align # Constraint # added constraint: constraint((T0310)S215.CB, (T0310)G371.CA) [> 2.9902 = 4.9836 < 6.4787] w=0.5797 to align # Constraint # added constraint: constraint((T0310)E216.CB, (T0310)C247.CB) [> 3.6511 = 6.0852 < 7.9107] w=0.5797 to align # Constraint # added constraint: constraint((T0310)A348.CB, (T0310)F364.CB) [> 4.0187 = 6.6978 < 8.7071] w=0.5797 to align # Constraint # added constraint: constraint((T0310)Q5.CB, (T0310)L174.CB) [> 3.6222 = 6.0369 < 7.8480] w=0.5797 to align # Constraint # added constraint: constraint((T0310)L43.CB, (T0310)T69.CB) [> 3.0940 = 5.1566 < 6.7036] w=0.5797 to align # Constraint # added constraint: constraint((T0310)H256.CB, (T0310)V312.CB) [> 4.2073 = 7.0121 < 9.1158] w=0.5652 to align # Constraint # added constraint: constraint((T0310)V223.CB, (T0310)T332.CB) [> 4.5624 = 7.6041 < 9.8853] w=0.5652 to align # Constraint # added constraint: constraint((T0310)S121.CB, (T0310)G145.CA) [> 3.3875 = 5.6459 < 7.3397] w=0.5611 to align # Constraint # added constraint: constraint((T0310)A17.CB, (T0310)G113.CA) [> 4.2933 = 7.1554 < 9.3020] w=0.5590 to align # Constraint # added constraint: constraint((T0310)E251.CB, (T0310)E303.CB) [> 4.4493 = 7.4155 < 9.6401] w=0.5590 to align # Constraint # added constraint: constraint((T0310)R122.CB, (T0310)C247.CB) [> 4.4959 = 7.4932 < 9.7412] w=0.5590 to align # Constraint # added constraint: constraint((T0310)S324.CB, (T0310)A368.CB) [> 3.8878 = 6.4796 < 8.4235] w=0.5590 to align # Constraint # added constraint: constraint((T0310)I118.CB, (T0310)G145.CA) [> 4.5510 = 7.5850 < 9.8605] w=0.5590 to align # Constraint # added constraint: constraint((T0310)V2.CB, (T0310)V181.CB) [> 3.4456 = 5.7426 < 7.4654] w=0.5590 to align # Constraint # added constraint: constraint((T0310)S89.CB, (T0310)S136.CB) [> 3.9639 = 6.6066 < 8.5885] w=0.5590 to align # Constraint # added constraint: constraint((T0310)Q276.CB, (T0310)F285.CB) [> 4.0215 = 6.7025 < 8.7132] w=0.5590 to align # Constraint # added constraint: constraint((T0310)L31.CB, (T0310)V168.CB) [> 4.4960 = 7.4934 < 9.7414] w=0.5590 to align # Constraint # added constraint: constraint((T0310)R39.CB, (T0310)N73.CB) [> 3.9190 = 6.5316 < 8.4911] w=0.5590 to align # Constraint # added constraint: constraint((T0310)G194.CA, (T0310)C247.CB) [> 4.6132 = 7.6886 < 9.9952] w=0.5590 to align # Constraint # added constraint: constraint((T0310)T332.CB, (T0310)F341.CB) [> 4.5460 = 7.5767 < 9.8497] w=0.5590 to align # Constraint # added constraint: constraint((T0310)I218.CB, (T0310)G323.CA) [> 4.4128 = 7.3547 < 9.5611] w=0.5590 to align # Constraint # added constraint: constraint((T0310)Q128.CB, (T0310)L155.CB) [> 3.7037 = 6.1729 < 8.0248] w=0.5590 to align # Constraint # added constraint: constraint((T0310)E106.CB, (T0310)W393.CB) [> 4.2864 = 7.1440 < 9.2872] w=0.5404 to align # Constraint # added constraint: constraint((T0310)A32.CB, (T0310)G78.CA) [> 4.4817 = 7.4695 < 9.7103] w=0.5383 to align # Constraint # added constraint: constraint((T0310)A149.CB, (T0310)N176.CB) [> 3.0294 = 5.0491 < 6.5638] w=0.5383 to align # Constraint # added constraint: constraint((T0310)H156.CB, (T0310)V172.CB) [> 3.9958 = 6.6597 < 8.6576] w=0.5383 to align # Constraint # added constraint: constraint((T0310)A348.CB, (T0310)L366.CB) [> 3.4344 = 5.7241 < 7.4413] w=0.5383 to align # Constraint # added constraint: constraint((T0310)R153.CB, (T0310)N176.CB) [> 4.3491 = 7.2485 < 9.4230] w=0.5383 to align # Constraint # added constraint: constraint((T0310)E104.CB, (T0310)R396.CB) [> 3.2507 = 5.4178 < 7.0431] w=0.5383 to align # Constraint # added constraint: constraint((T0310)I118.CB, (T0310)V181.CB) [> 3.7885 = 6.3141 < 8.2084] w=0.5383 to align # Constraint # added constraint: constraint((T0310)S121.CB, (T0310)L289.CB) [> 3.7741 = 6.2902 < 8.1772] w=0.5383 to align # Constraint # added constraint: constraint((T0310)Q128.CB, (T0310)L142.CB) [> 3.8025 = 6.3375 < 8.2388] w=0.5383 to align # Constraint # added constraint: constraint((T0310)E147.CB, (T0310)L289.CB) [> 3.5468 = 5.9113 < 7.6847] w=0.5383 to align # Constraint # added constraint: constraint((T0310)Y243.CB, (T0310)Y288.CB) [> 3.6522 = 6.0871 < 7.9132] w=0.5383 to align # Constraint # added constraint: constraint((T0310)A245.CB, (T0310)Y288.CB) [> 4.3982 = 7.3303 < 9.5294] w=0.5383 to align # Constraint # added constraint: constraint((T0310)A245.CB, (T0310)L289.CB) [> 3.8802 = 6.4669 < 8.4070] w=0.5383 to align # Constraint # added constraint: constraint((T0310)E275.CB, (T0310)F285.CB) [> 3.5509 = 5.9182 < 7.6937] w=0.5383 to align # Constraint # added constraint: constraint((T0310)Y288.CB, (T0310)D301.CB) [> 3.9316 = 6.5526 < 8.5184] w=0.5383 to align # Constraint # added constraint: constraint((T0310)S86.CB, (T0310)S136.CB) [> 4.0893 = 6.8154 < 8.8600] w=0.5383 to align # Constraint # added constraint: constraint((T0310)V229.CB, (T0310)T262.CB) [> 3.6080 = 6.0133 < 7.8173] w=0.5383 to align # Constraint # added constraint: constraint((T0310)K240.CB, (T0310)L272.CB) [> 4.1761 = 6.9601 < 9.0481] w=0.5383 to align # Constraint # added constraint: constraint((T0310)H214.CB, (T0310)S373.CB) [> 3.5157 = 5.8595 < 7.6173] w=0.5383 to align # Constraint # added constraint: constraint((T0310)G144.CA, (T0310)L174.CB) [> 4.2836 = 7.1393 < 9.2810] w=0.5238 to align # Constraint # added constraint: constraint((T0310)Y243.CB, (T0310)F285.CB) [> 3.4436 = 5.7393 < 7.4612] w=0.5176 to align # Constraint # added constraint: constraint((T0310)V2.CB, (T0310)T177.CB) [> 4.1354 = 6.8923 < 8.9600] w=0.5176 to align # Constraint # added constraint: constraint((T0310)S325.CB, (T0310)V370.CB) [> 3.0678 = 5.1130 < 6.6469] w=0.5176 to align # Constraint # added constraint: constraint((T0310)H214.CB, (T0310)F364.CB) [> 3.7196 = 6.1994 < 8.0592] w=0.5176 to align # Constraint # added constraint: constraint((T0310)S85.CB, (T0310)A135.CB) [> 3.7545 = 6.2575 < 8.1347] w=0.5176 to align # Constraint # added constraint: constraint((T0310)I28.CB, (T0310)S86.CB) [> 4.0329 = 6.7216 < 8.7381] w=0.5176 to align # Constraint # added constraint: constraint((T0310)I118.CB, (T0310)L142.CB) [> 4.3574 = 7.2623 < 9.4410] w=0.5031 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)I255.CB) [> 4.6007 = 7.6678 < 9.9681] w=0.5031 to align # Constraint # added constraint: constraint((T0310)L116.CB, (T0310)L142.CB) [> 4.4445 = 7.4075 < 9.6297] w=0.5031 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)V312.CB) [> 4.3822 = 7.3036 < 9.4947] w=0.5031 to align # Constraint # added constraint: constraint((T0310)G194.CA, (T0310)E216.CB) [> 4.3274 = 7.2123 < 9.3760] w=0.4990 to align # Constraint # added constraint: constraint((T0310)L235.CB, (T0310)I268.CB) [> 3.6680 = 6.1133 < 7.9473] w=0.4990 to align # Constraint # added constraint: constraint((T0310)F119.CB, (T0310)A148.CB) [> 4.5874 = 7.6457 < 9.9394] w=0.4969 to align # Constraint # added constraint: constraint((T0310)P210.CB, (T0310)G387.CA) [> 4.1371 = 6.8951 < 8.9637] w=0.4969 to align # Constraint # added constraint: constraint((T0310)C349.CB, (T0310)F364.CB) [> 4.1045 = 6.8408 < 8.8930] w=0.4969 to align # Constraint # added constraint: constraint((T0310)C349.CB, (T0310)G365.CA) [> 4.2324 = 7.0540 < 9.1702] w=0.4969 to align # Constraint # added constraint: constraint((T0310)V110.CB, (T0310)T391.CB) [> 4.3521 = 7.2535 < 9.4296] w=0.4969 to align # Constraint # added constraint: constraint((T0310)R39.CB, (T0310)T69.CB) [> 3.9363 = 6.5606 < 8.5287] w=0.4969 to align # Constraint # added constraint: constraint((T0310)Q128.CB, (T0310)G144.CA) [> 4.0510 = 6.7516 < 8.7771] w=0.4969 to align # Constraint # added constraint: constraint((T0310)C247.CB, (T0310)T327.CB) [> 4.6626 = 7.7711 < 10.1024] w=0.4969 to align # Constraint # added constraint: constraint((T0310)S228.CB, (T0310)N353.CB) [> 4.3911 = 7.3185 < 9.5141] w=0.4969 to align # Constraint # added constraint: constraint((T0310)K146.CB, (T0310)N176.CB) [> 4.2613 = 7.1022 < 9.2329] w=0.4969 to align # Constraint # added constraint: constraint((T0310)A338.CB, (T0310)N353.CB) [> 4.6595 = 7.7659 < 10.0956] w=0.4969 to align # Constraint # added constraint: constraint((T0310)E226.CB, (T0310)T337.CB) [> 4.6249 = 7.7081 < 10.0206] w=0.4969 to align # Constraint # added constraint: constraint((T0310)H220.CB, (T0310)A315.CB) [> 4.6051 = 7.6751 < 9.9777] w=0.4969 to align # Constraint # added constraint: constraint((T0310)L103.CB, (T0310)R396.CB) [> 4.1214 = 6.8691 < 8.9298] w=0.4969 to align # Constraint # added constraint: constraint((T0310)L103.CB, (T0310)L395.CB) [> 3.6653 = 6.1089 < 7.9416] w=0.4969 to align # Constraint # added constraint: constraint((T0310)H326.CB, (T0310)G367.CA) [> 3.9676 = 6.6127 < 8.5964] w=0.4969 to align # Constraint # added constraint: constraint((T0310)P111.CB, (T0310)T390.CB) [> 4.4454 = 7.4091 < 9.6318] w=0.4783 to align # Constraint # added constraint: constraint((T0310)A348.CB, (T0310)G365.CA) [> 3.1071 = 5.1785 < 6.7321] w=0.4762 to align # Constraint # added constraint: constraint((T0310)H214.CB, (T0310)L366.CB) [> 4.2943 = 7.1571 < 9.3042] w=0.4762 to align # Constraint # added constraint: constraint((T0310)A249.CB, (T0310)T356.CB) [> 4.4033 = 7.3388 < 9.5405] w=0.4762 to align # Constraint # added constraint: constraint((T0310)H326.CB, (T0310)G365.CA) [> 4.0877 = 6.8128 < 8.8567] w=0.4762 to align # Constraint # added constraint: constraint((T0310)L75.CB, (T0310)C125.CB) [> 3.0759 = 5.1265 < 6.6645] w=0.4762 to align # Constraint # added constraint: constraint((T0310)R39.CB, (T0310)A76.CB) [> 4.4348 = 7.3913 < 9.6087] w=0.4762 to align # Constraint # added constraint: constraint((T0310)F285.CB, (T0310)L302.CB) [> 3.8013 = 6.3356 < 8.2362] w=0.4762 to align # Constraint # added constraint: constraint((T0310)K143.CB, (T0310)L174.CB) [> 4.5880 = 7.6466 < 9.9406] w=0.4596 to align # Constraint # added constraint: constraint((T0310)L183.CB, (T0310)A205.CB) [> 3.4003 = 5.6671 < 7.3672] w=0.4555 to align # Constraint # added constraint: constraint((T0310)K71.CB, (T0310)C125.CB) [> 3.3452 = 5.5753 < 7.2479] w=0.4555 to align # Constraint # added constraint: constraint((T0310)S325.CB, (T0310)A368.CB) [> 3.1051 = 5.1751 < 6.7276] w=0.4555 to align # Constraint # added constraint: constraint((T0310)D124.CB, (T0310)G145.CA) [> 4.1313 = 6.8855 < 8.9511] w=0.4555 to align # Constraint # added constraint: constraint((T0310)G367.CA, (T0310)R376.CB) [> 3.4584 = 5.7640 < 7.4932] w=0.4555 to align # Constraint # added constraint: constraint((T0310)V117.CB, (T0310)Q128.CB) [> 4.1520 = 6.9200 < 8.9960] w=0.4555 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)I316.CB) [> 4.5667 = 7.6111 < 9.8944] w=0.4410 to align # Constraint # added constraint: constraint((T0310)M221.CB, (T0310)V232.CB) [> 4.3764 = 7.2940 < 9.4822] w=0.4410 to align # Constraint # added constraint: constraint((T0310)L116.CB, (T0310)L140.CB) [> 4.3170 = 7.1950 < 9.3535] w=0.4410 to align # Constraint # added constraint: constraint((T0310)G139.CA, (T0310)E170.CB) [> 4.5521 = 7.5869 < 9.8630] w=0.4410 to align # Constraint # added constraint: constraint((T0310)A83.CB, (T0310)A131.CB) [> 3.5749 = 5.9582 < 7.7457] w=0.4389 to align # Constraint # added constraint: constraint((T0310)R234.CB, (T0310)V331.CB) [> 4.3337 = 7.2229 < 9.3898] w=0.4369 to align # Constraint # added constraint: constraint((T0310)A9.CB, (T0310)M186.CB) [> 4.2932 = 7.1553 < 9.3019] w=0.4348 to align # Constraint # added constraint: constraint((T0310)A133.CB, (T0310)L189.CB) [> 4.5687 = 7.6145 < 9.8989] w=0.4348 to align # Constraint # added constraint: constraint((T0310)L142.CB, (T0310)H156.CB) [> 4.2951 = 7.1586 < 9.3061] w=0.4348 to align # Constraint # added constraint: constraint((T0310)I316.CB, (T0310)F340.CB) [> 4.2132 = 7.0220 < 9.1286] w=0.4348 to align # Constraint # added constraint: constraint((T0310)A348.CB, (T0310)A368.CB) [> 3.4467 = 5.7444 < 7.4678] w=0.4348 to align # Constraint # added constraint: constraint((T0310)C349.CB, (T0310)F358.CB) [> 3.9090 = 6.5149 < 8.4694] w=0.4348 to align # Constraint # added constraint: constraint((T0310)E52.CB, (T0310)S68.CB) [> 3.1251 = 5.2084 < 6.7710] w=0.4348 to align # Constraint # added constraint: constraint((T0310)E52.CB, (T0310)H280.CB) [> 3.2715 = 5.4525 < 7.0883] w=0.4348 to align # Constraint # added constraint: constraint((T0310)V292.CB, (T0310)C305.CB) [> 4.5408 = 7.5680 < 9.8384] w=0.4348 to align # Constraint # added constraint: constraint((T0310)N248.CB, (T0310)F358.CB) [> 4.4556 = 7.4260 < 9.6538] w=0.4348 to align # Constraint # added constraint: constraint((T0310)G217.CA, (T0310)A249.CB) [> 4.6879 = 7.8131 < 10.1571] w=0.4348 to align # Constraint # added constraint: constraint((T0310)V232.CB, (T0310)N353.CB) [> 4.6220 = 7.7033 < 10.0143] w=0.4348 to align # Constraint # added constraint: constraint((T0310)F341.CB, (T0310)W352.CB) [> 4.3689 = 7.2815 < 9.4659] w=0.4348 to align # Constraint # added constraint: constraint((T0310)L75.CB, (T0310)V129.CB) [> 3.0995 = 5.1658 < 6.7155] w=0.4348 to align # Constraint # added constraint: constraint((T0310)V117.CB, (T0310)V129.CB) [> 2.7357 = 4.5594 < 5.9273] w=0.4182 to align # Constraint # added constraint: constraint((T0310)V129.CB, (T0310)L155.CB) [> 3.7889 = 6.3148 < 8.2092] w=0.4161 to align # Constraint # added constraint: constraint((T0310)G361.CA, (T0310)G381.CA) [> 3.6204 = 6.0340 < 7.8442] w=0.4141 to align # Constraint # added constraint: constraint((T0310)A9.CB, (T0310)V172.CB) [> 4.4986 = 7.4976 < 9.7469] w=0.4141 to align # Constraint # added constraint: constraint((T0310)R24.CB, (T0310)A83.CB) [> 4.4395 = 7.3992 < 9.6189] w=0.4141 to align # Constraint # added constraint: constraint((T0310)M8.CB, (T0310)K169.CB) [> 4.3989 = 7.3316 < 9.5310] w=0.4141 to align # Constraint # added constraint: constraint((T0310)L103.CB, (T0310)G397.CA) [> 2.9573 = 4.9288 < 6.4074] w=0.4141 to align # Constraint # added constraint: constraint((T0310)C125.CB, (T0310)N152.CB) [> 4.2690 = 7.1150 < 9.2494] w=0.4141 to align # Constraint # added constraint: constraint((T0310)I202.CB, (T0310)G213.CA) [> 4.4625 = 7.4375 < 9.6688] w=0.4141 to align # Constraint # added constraint: constraint((T0310)M221.CB, (T0310)S355.CB) [> 4.1613 = 6.9354 < 9.0160] w=0.4141 to align # Constraint # added constraint: constraint((T0310)L272.CB, (T0310)L304.CB) [> 4.3213 = 7.2022 < 9.3629] w=0.4141 to align # Constraint # added constraint: constraint((T0310)L72.CB, (T0310)L126.CB) [> 3.4969 = 5.8282 < 7.5767] w=0.3954 to align # Constraint # added constraint: constraint((T0310)V129.CB, (T0310)I191.CB) [> 3.0925 = 5.1541 < 6.7004] w=0.3954 to align # Constraint # added constraint: constraint((T0310)T109.CB, (T0310)K392.CB) [> 4.6072 = 7.6787 < 9.9824] w=0.3954 to align # Constraint # added constraint: constraint((T0310)A348.CB, (T0310)I372.CB) [> 3.8577 = 6.4295 < 8.3584] w=0.3954 to align # Constraint # added constraint: constraint((T0310)P123.CB, (T0310)S151.CB) [> 2.9020 = 4.8367 < 6.2878] w=0.3954 to align # Constraint # added constraint: constraint((T0310)L43.CB, (T0310)K71.CB) [> 4.3340 = 7.2234 < 9.3904] w=0.3934 to align # Constraint # added constraint: constraint((T0310)R363.CB, (T0310)G381.CA) [> 3.6421 = 6.0701 < 7.8912] w=0.3934 to align # Constraint # added constraint: constraint((T0310)G213.CA, (T0310)L366.CB) [> 4.3651 = 7.2751 < 9.4577] w=0.3934 to align # Constraint # added constraint: constraint((T0310)N46.CB, (T0310)S68.CB) [> 2.8704 = 4.7840 < 6.2192] w=0.3934 to align # Constraint # added constraint: constraint((T0310)L250.CB, (T0310)T356.CB) [> 3.4820 = 5.8034 < 7.5444] w=0.3934 to align # Constraint # added constraint: constraint((T0310)L79.CB, (T0310)V129.CB) [> 3.3258 = 5.5430 < 7.2058] w=0.3934 to align # Constraint # added constraint: constraint((T0310)S324.CB, (T0310)S347.CB) [> 4.2377 = 7.0628 < 9.1816] w=0.3789 to align # Constraint # added constraint: constraint((T0310)F119.CB, (T0310)V129.CB) [> 4.0619 = 6.7699 < 8.8008] w=0.3768 to align # Constraint # added constraint: constraint((T0310)L253.CB, (T0310)I268.CB) [> 4.3299 = 7.2165 < 9.3815] w=0.3768 to align # Constraint # added constraint: constraint((T0310)V329.CB, (T0310)T356.CB) [> 3.1005 = 5.1674 < 6.7177] w=0.3747 to align # Constraint # added constraint: constraint((T0310)I82.CB, (T0310)L132.CB) [> 3.4578 = 5.7630 < 7.4919] w=0.3727 to align # Constraint # added constraint: constraint((T0310)M212.CB, (T0310)T374.CB) [> 4.0552 = 6.7587 < 8.7863] w=0.3727 to align # Constraint # added constraint: constraint((T0310)S86.CB, (T0310)L385.CB) [> 3.7844 = 6.3073 < 8.1995] w=0.3727 to align # Constraint # added constraint: constraint((T0310)H156.CB, (T0310)Q173.CB) [> 4.0044 = 6.6739 < 8.6761] w=0.3727 to align # Constraint # added constraint: constraint((T0310)C349.CB, (T0310)L366.CB) [> 3.9869 = 6.6448 < 8.6382] w=0.3727 to align # Constraint # added constraint: constraint((T0310)H326.CB, (T0310)F364.CB) [> 2.8015 = 4.6692 < 6.0700] w=0.3727 to align # Constraint # added constraint: constraint((T0310)I82.CB, (T0310)I134.CB) [> 4.4570 = 7.4284 < 9.6569] w=0.3727 to align # Constraint # added constraint: constraint((T0310)E120.CB, (T0310)C247.CB) [> 4.6687 = 7.7811 < 10.1155] w=0.3727 to align # Constraint # added constraint: constraint((T0310)L254.CB, (T0310)I306.CB) [> 4.6240 = 7.7067 < 10.0187] w=0.3727 to align # Constraint # added constraint: constraint((T0310)S375.CB, (T0310)G384.CA) [> 4.0641 = 6.7735 < 8.8055] w=0.3727 to align # Constraint # added constraint: constraint((T0310)L75.CB, (T0310)Q128.CB) [> 4.4602 = 7.4336 < 9.6637] w=0.3727 to align # Constraint # added constraint: constraint((T0310)V2.CB, (T0310)L141.CB) [> 4.2732 = 7.1220 < 9.2586] w=0.3727 to align # Constraint # added constraint: constraint((T0310)R237.CB, (T0310)M271.CB) [> 3.7712 = 6.2853 < 8.1709] w=0.3540 to align # Constraint # added constraint: constraint((T0310)V236.CB, (T0310)E275.CB) [> 4.2860 = 7.1433 < 9.2863] w=0.3540 to align # Constraint # added constraint: constraint((T0310)D328.CB, (T0310)T356.CB) [> 4.2625 = 7.1042 < 9.2355] w=0.3520 to align # Constraint # added constraint: constraint((T0310)T327.CB, (T0310)T356.CB) [> 2.3735 = 3.9558 < 5.1425] w=0.3520 to align # Constraint # added constraint: constraint((T0310)A130.CB, (T0310)V172.CB) [> 4.0139 = 6.6899 < 8.6968] w=0.3520 to align # Constraint # added constraint: constraint((T0310)C349.CB, (T0310)S359.CB) [> 3.9313 = 6.5522 < 8.5178] w=0.3520 to align # Constraint # added constraint: constraint((T0310)V199.CB, (T0310)G371.CA) [> 4.1439 = 6.9065 < 8.9785] w=0.3520 to align # Constraint # added constraint: constraint((T0310)G6.CA, (T0310)E170.CB) [> 4.6635 = 7.7726 < 10.1044] w=0.3520 to align # Constraint # added constraint: constraint((T0310)N102.CB, (T0310)K398.CB) [> 3.2304 = 5.3841 < 6.9993] w=0.3520 to align # Constraint # added constraint: constraint((T0310)G213.CA, (T0310)T374.CB) [> 3.3441 = 5.5735 < 7.2456] w=0.3520 to align # Constraint # added constraint: constraint((T0310)L75.CB, (T0310)D124.CB) [> 3.2245 = 5.3741 < 6.9864] w=0.3520 to align # Constraint # added constraint: constraint((T0310)A245.CB, (T0310)L302.CB) [> 4.5510 = 7.5851 < 9.8606] w=0.3520 to align # Constraint # added constraint: constraint((T0310)V236.CB, (T0310)L253.CB) [> 3.5395 = 5.8991 < 7.6689] w=0.3354 to align # Constraint # added constraint: constraint((T0310)M221.CB, (T0310)V236.CB) [> 3.6496 = 6.0826 < 7.9074] w=0.3354 to align # Constraint # added constraint: constraint((T0310)L94.CB, (T0310)V108.CB) [> 3.9867 = 6.6446 < 8.6380] w=0.3354 to align # Constraint # added constraint: constraint((T0310)V129.CB, (T0310)R193.CB) [> 4.4904 = 7.4840 < 9.7291] w=0.3333 to align # Constraint # added constraint: constraint((T0310)K143.CB, (T0310)E180.CB) [> 3.6701 = 6.1168 < 7.9519] w=0.3333 to align # Constraint # added constraint: constraint((T0310)L43.CB, (T0310)L65.CB) [> 3.5515 = 5.9193 < 7.6950] w=0.3313 to align # Constraint # added constraint: constraint((T0310)S89.CB, (T0310)L389.CB) [> 3.8966 = 6.4944 < 8.4427] w=0.3313 to align # Constraint # added constraint: constraint((T0310)K47.CB, (T0310)L65.CB) [> 3.1794 = 5.2990 < 6.8887] w=0.3313 to align # Constraint # added constraint: constraint((T0310)G365.CA, (T0310)H378.CB) [> 2.9657 = 4.9429 < 6.4257] w=0.3313 to align # Constraint # added constraint: constraint((T0310)G361.CA, (T0310)P382.CB) [> 3.8385 = 6.3975 < 8.3168] w=0.3313 to align # Constraint # added constraint: constraint((T0310)H326.CB, (T0310)L366.CB) [> 3.1425 = 5.2376 < 6.8088] w=0.3313 to align # Constraint # added constraint: constraint((T0310)S239.CB, (T0310)E303.CB) [> 4.5767 = 7.6277 < 9.9161] w=0.3313 to align # Constraint # added constraint: constraint((T0310)V277.CB, (T0310)A286.CB) [> 4.7270 = 7.8783 < 10.2418] w=0.3313 to align # Constraint # added constraint: constraint((T0310)E52.CB, (T0310)A286.CB) [> 3.7523 = 6.2538 < 8.1300] w=0.3313 to align # Constraint # added constraint: constraint((T0310)L103.CB, (T0310)K398.CB) [> 3.9148 = 6.5247 < 8.4821] w=0.3313 to align # Constraint # added constraint: constraint((T0310)T159.CB, (T0310)Q173.CB) [> 3.3324 = 5.5540 < 7.2203] w=0.3313 to align # Constraint # added constraint: constraint((T0310)S121.CB, (T0310)A245.CB) [> 3.0433 = 5.0722 < 6.5938] w=0.3313 to align # Constraint # added constraint: constraint((T0310)S89.CB, (T0310)L385.CB) [> 3.3941 = 5.6568 < 7.3538] w=0.3313 to align # Constraint # added constraint: constraint((T0310)S74.CB, (T0310)L126.CB) [> 3.2578 = 5.4297 < 7.0586] w=0.3313 to align # Constraint # added constraint: constraint((T0310)A53.CB, (T0310)S68.CB) [> 4.0265 = 6.7108 < 8.7241] w=0.3313 to align # Constraint # added constraint: constraint((T0310)C349.CB, (T0310)G367.CA) [> 4.1777 = 6.9629 < 9.0517] w=0.3126 to align # Constraint # added constraint: constraint((T0310)L79.CB, (T0310)P127.CB) [> 3.6601 = 6.1002 < 7.9302] w=0.3126 to align # Constraint # added constraint: constraint((T0310)A53.CB, (T0310)L67.CB) [> 2.7695 = 4.6158 < 6.0006] w=0.3106 to align # Constraint # added constraint: constraint((T0310)A53.CB, (T0310)L65.CB) [> 3.3434 = 5.5723 < 7.2440] w=0.3106 to align # Constraint # added constraint: constraint((T0310)E179.CB, (T0310)A205.CB) [> 3.7485 = 6.2475 < 8.1218] w=0.3106 to align # Constraint # added constraint: constraint((T0310)L43.CB, (T0310)L62.CB) [> 2.9398 = 4.8997 < 6.3696] w=0.3106 to align # Constraint # added constraint: constraint((T0310)I82.CB, (T0310)L385.CB) [> 3.9525 = 6.5875 < 8.5637] w=0.3106 to align # Constraint # added constraint: constraint((T0310)Q203.CB, (T0310)G213.CA) [> 4.1892 = 6.9819 < 9.0765] w=0.3106 to align # Constraint # added constraint: constraint((T0310)L34.CB, (T0310)T159.CB) [> 4.2552 = 7.0920 < 9.2196] w=0.3106 to align # Constraint # added constraint: constraint((T0310)R237.CB, (T0310)S355.CB) [> 3.6080 = 6.0133 < 7.8172] w=0.3106 to align # Constraint # added constraint: constraint((T0310)D328.CB, (T0310)L342.CB) [> 4.5395 = 7.5658 < 9.8355] w=0.3106 to align # Constraint # added constraint: constraint((T0310)L105.CB, (T0310)R396.CB) [> 4.4692 = 7.4486 < 9.6832] w=0.3106 to align # Constraint # added constraint: constraint((T0310)H326.CB, (T0310)S359.CB) [> 4.3960 = 7.3266 < 9.5246] w=0.3106 to align # Constraint # added constraint: constraint((T0310)S85.CB, (T0310)L385.CB) [> 3.9030 = 6.5050 < 8.4565] w=0.3106 to align # Constraint # added constraint: constraint((T0310)L141.CB, (T0310)V172.CB) [> 4.5316 = 7.5526 < 9.8184] w=0.2961 to align # Constraint # added constraint: constraint((T0310)V199.CB, (T0310)M212.CB) [> 2.6231 = 4.3718 < 5.6833] w=0.2919 to align # Constraint # added constraint: constraint((T0310)I202.CB, (T0310)M212.CB) [> 4.1298 = 6.8831 < 8.9480] w=0.2919 to align # Constraint # added constraint: constraint((T0310)Q203.CB, (T0310)M212.CB) [> 3.9696 = 6.6160 < 8.6007] w=0.2919 to align # Constraint # added constraint: constraint((T0310)L79.CB, (T0310)L132.CB) [> 3.7869 = 6.3114 < 8.2049] w=0.2919 to align # Constraint # added constraint: constraint((T0310)I218.CB, (T0310)H326.CB) [> 4.5863 = 7.6438 < 9.9370] w=0.2919 to align # Constraint # added constraint: constraint((T0310)S121.CB, (T0310)A246.CB) [> 3.8850 = 6.4750 < 8.4175] w=0.2899 to align # Constraint # added constraint: constraint((T0310)R122.CB, (T0310)L289.CB) [> 4.2348 = 7.0579 < 9.1753] w=0.2899 to align # Constraint # added constraint: constraint((T0310)A130.CB, (T0310)Q173.CB) [> 3.9494 = 6.5823 < 8.5570] w=0.2899 to align # Constraint # added constraint: constraint((T0310)S136.CB, (T0310)I377.CB) [> 2.9336 = 4.8893 < 6.3561] w=0.2899 to align # Constraint # added constraint: constraint((T0310)L140.CB, (T0310)L174.CB) [> 4.0915 = 6.8192 < 8.8650] w=0.2899 to align # Constraint # added constraint: constraint((T0310)H156.CB, (T0310)V175.CB) [> 2.7474 = 4.5790 < 5.9527] w=0.2899 to align # Constraint # added constraint: constraint((T0310)S195.CB, (T0310)H214.CB) [> 4.2814 = 7.1357 < 9.2764] w=0.2899 to align # Constraint # added constraint: constraint((T0310)S196.CB, (T0310)R363.CB) [> 3.2889 = 5.4815 < 7.1259] w=0.2899 to align # Constraint # added constraint: constraint((T0310)M212.CB, (T0310)L366.CB) [> 3.0306 = 5.0510 < 6.5662] w=0.2899 to align # Constraint # added constraint: constraint((T0310)Q160.CB, (T0310)V172.CB) [> 4.3258 = 7.2096 < 9.3725] w=0.2899 to align # Constraint # added constraint: constraint((T0310)F364.CB, (T0310)H378.CB) [> 3.7256 = 6.2093 < 8.0720] w=0.2899 to align # Constraint # added constraint: constraint((T0310)Q5.CB, (T0310)N176.CB) [> 3.5486 = 5.9144 < 7.6887] w=0.2899 to align # Constraint # added constraint: constraint((T0310)A9.CB, (T0310)L174.CB) [> 3.4892 = 5.8154 < 7.5600] w=0.2899 to align # Constraint # added constraint: constraint((T0310)G12.CA, (T0310)V172.CB) [> 3.6585 = 6.0975 < 7.9268] w=0.2899 to align # Constraint # added constraint: constraint((T0310)L43.CB, (T0310)E52.CB) [> 3.8587 = 6.4312 < 8.3606] w=0.2899 to align # Constraint # added constraint: constraint((T0310)E52.CB, (T0310)L67.CB) [> 3.0145 = 5.0241 < 6.5313] w=0.2899 to align # Constraint # added constraint: constraint((T0310)S359.CB, (T0310)A368.CB) [> 2.7449 = 4.5748 < 5.9472] w=0.2899 to align # Constraint # added constraint: constraint((T0310)R363.CB, (T0310)V383.CB) [> 3.0015 = 5.0024 < 6.5032] w=0.2899 to align # Constraint # added constraint: constraint((T0310)G365.CA, (T0310)I377.CB) [> 3.6883 = 6.1472 < 7.9914] w=0.2899 to align # Constraint # added constraint: constraint((T0310)G365.CA, (T0310)V383.CB) [> 3.4231 = 5.7052 < 7.4167] w=0.2899 to align # Constraint # added constraint: constraint((T0310)L366.CB, (T0310)H378.CB) [> 3.2662 = 5.4437 < 7.0768] w=0.2899 to align # Constraint # added constraint: constraint((T0310)G367.CA, (T0310)I377.CB) [> 3.6049 = 6.0082 < 7.8106] w=0.2899 to align # Constraint # added constraint: constraint((T0310)A148.CB, (T0310)L289.CB) [> 4.4249 = 7.3749 < 9.5873] w=0.2899 to align # Constraint # added constraint: constraint((T0310)G213.CA, (T0310)F364.CB) [> 4.0046 = 6.6744 < 8.6767] w=0.2899 to align # Constraint # added constraint: constraint((T0310)H214.CB, (T0310)G367.CA) [> 3.7301 = 6.2169 < 8.0819] w=0.2899 to align # Constraint # added constraint: constraint((T0310)G144.CA, (T0310)T177.CB) [> 4.1665 = 6.9442 < 9.0275] w=0.2733 to align # Constraint # added constraint: constraint((T0310)V117.CB, (T0310)L132.CB) [> 3.8853 = 6.4755 < 8.4181] w=0.2712 to align # Constraint # added constraint: constraint((T0310)H220.CB, (T0310)S347.CB) [> 4.6804 = 7.8006 < 10.1408] w=0.2712 to align # Constraint # added constraint: constraint((T0310)S347.CB, (T0310)I372.CB) [> 4.5709 = 7.6182 < 9.9036] w=0.2692 to align # Constraint # added constraint: constraint((T0310)S347.CB, (T0310)V370.CB) [> 4.5341 = 7.5568 < 9.8239] w=0.2692 to align # Constraint # added constraint: constraint((T0310)E52.CB, (T0310)L61.CB) [> 3.2635 = 5.4391 < 7.0709] w=0.2692 to align # Constraint # added constraint: constraint((T0310)R363.CB, (T0310)P382.CB) [> 4.1743 = 6.9571 < 9.0443] w=0.2692 to align # Constraint # added constraint: constraint((T0310)A348.CB, (T0310)G361.CA) [> 3.4046 = 5.6743 < 7.3766] w=0.2484 to align # Constraint # added constraint: constraint((T0310)S347.CB, (T0310)E369.CB) [> 3.7353 = 6.2256 < 8.0932] w=0.2484 to align # Constraint # added constraint: constraint((T0310)S347.CB, (T0310)G367.CA) [> 4.2614 = 7.1023 < 9.2330] w=0.2484 to align # Constraint # added constraint: constraint((T0310)S347.CB, (T0310)G361.CA) [> 4.2614 = 7.1023 < 9.2330] w=0.2484 to align # Constraint # added constraint: constraint((T0310)H326.CB, (T0310)A368.CB) [> 2.7756 = 4.6260 < 6.0138] w=0.2484 to align # Constraint # added constraint: constraint((T0310)G365.CA, (T0310)T374.CB) [> 3.3476 = 5.5794 < 7.2532] w=0.2484 to align # Constraint # added constraint: constraint((T0310)I42.CB, (T0310)S68.CB) [> 4.5521 = 7.5868 < 9.8629] w=0.2484 to align # Constraint # added constraint: constraint((T0310)V211.CB, (T0310)L366.CB) [> 4.0089 = 6.6814 < 8.6859] w=0.2484 to align # Constraint # added constraint: constraint((T0310)V211.CB, (T0310)I372.CB) [> 3.9743 = 6.6238 < 8.6109] w=0.2484 to align # Constraint # added constraint: constraint((T0310)V211.CB, (T0310)T374.CB) [> 4.0509 = 6.7514 < 8.7769] w=0.2484 to align # Constraint # added constraint: constraint((T0310)V223.CB, (T0310)V236.CB) [> 4.3053 = 7.1755 < 9.3282] w=0.2484 to align # Constraint # added constraint: constraint((T0310)P192.CB, (T0310)Q203.CB) [> 4.5799 = 7.6332 < 9.9231] w=0.2484 to align # Constraint # added constraint: constraint((T0310)I27.CB, (T0310)H166.CB) [> 2.9235 = 4.8726 < 6.3343] w=0.2484 to align # Constraint # added constraint: constraint((T0310)Q38.CB, (T0310)L157.CB) [> 4.4672 = 7.4454 < 9.6790] w=0.2484 to align # Constraint # added constraint: constraint((T0310)S85.CB, (T0310)P382.CB) [> 3.7618 = 6.2697 < 8.1507] w=0.2484 to align # Constraint # added constraint: constraint((T0310)L183.CB, (T0310)A206.CB) [> 3.9715 = 6.6191 < 8.6048] w=0.2484 to align # Constraint # added constraint: constraint((T0310)R193.CB, (T0310)M212.CB) [> 4.4962 = 7.4937 < 9.7418] w=0.2484 to align # Constraint # added constraint: constraint((T0310)Y288.CB, (T0310)I306.CB) [> 3.8773 = 6.4621 < 8.4007] w=0.2484 to align # Constraint # added constraint: constraint((T0310)Y288.CB, (T0310)E307.CB) [> 3.1923 = 5.3205 < 6.9167] w=0.2484 to align # Constraint # added constraint: constraint((T0310)T290.CB, (T0310)E307.CB) [> 4.1879 = 6.9798 < 9.0737] w=0.2484 to align # Constraint # added constraint: constraint((T0310)V329.CB, (T0310)N353.CB) [> 4.7578 = 7.9297 < 10.3086] w=0.2484 to align # Constraint # added constraint: constraint((T0310)A354.CB, (T0310)G371.CA) [> 3.6700 = 6.1166 < 7.9516] w=0.2484 to align # Constraint # added constraint: constraint((T0310)R357.CB, (T0310)E369.CB) [> 3.7729 = 6.2882 < 8.1747] w=0.2484 to align # Constraint # added constraint: constraint((T0310)R357.CB, (T0310)I372.CB) [> 2.7847 = 4.6411 < 6.0334] w=0.2484 to align # Constraint # added constraint: constraint((T0310)F358.CB, (T0310)E369.CB) [> 3.0773 = 5.1288 < 6.6674] w=0.2484 to align # Constraint # added constraint: constraint((T0310)F358.CB, (T0310)V370.CB) [> 3.4838 = 5.8064 < 7.5483] w=0.2484 to align # Constraint # added constraint: constraint((T0310)S359.CB, (T0310)E369.CB) [> 3.4673 = 5.7788 < 7.5124] w=0.2484 to align # Constraint # added constraint: constraint((T0310)L366.CB, (T0310)I377.CB) [> 2.9158 = 4.8597 < 6.3175] w=0.2484 to align # Constraint # added constraint: constraint((T0310)A9.CB, (T0310)G113.CA) [> 4.7706 = 7.9510 < 10.3363] w=0.2484 to align # Constraint # added constraint: constraint((T0310)F119.CB, (T0310)G194.CA) [> 4.4525 = 7.4208 < 9.6471] w=0.2484 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)V309.CB) [> 4.6287 = 7.7145 < 10.0289] w=0.2484 to align # Constraint # added constraint: constraint((T0310)V223.CB, (T0310)I330.CB) [> 4.5670 = 7.6116 < 9.8951] w=0.2484 to align # Constraint # added constraint: constraint((T0310)G78.CA, (T0310)P127.CB) [> 3.8493 = 6.4155 < 8.3401] w=0.2484 to align # Constraint # added constraint: constraint((T0310)G78.CA, (T0310)A130.CB) [> 4.0871 = 6.8119 < 8.8554] w=0.2484 to align # Constraint # added constraint: constraint((T0310)Q81.CB, (T0310)G371.CA) [> 4.1420 = 6.9033 < 8.9742] w=0.2484 to align # Constraint # added constraint: constraint((T0310)I112.CB, (T0310)I377.CB) [> 3.9148 = 6.5246 < 8.4820] w=0.2484 to align # Constraint # added constraint: constraint((T0310)L116.CB, (T0310)P192.CB) [> 4.6866 = 7.8110 < 10.1543] w=0.2484 to align # Constraint # added constraint: constraint((T0310)P127.CB, (T0310)L155.CB) [> 3.9179 = 6.5298 < 8.4887] w=0.2484 to align # Constraint # added constraint: constraint((T0310)N138.CB, (T0310)I377.CB) [> 3.6560 = 6.0933 < 7.9213] w=0.2484 to align # Constraint # added constraint: constraint((T0310)V199.CB, (T0310)G365.CA) [> 3.9490 = 6.5817 < 8.5562] w=0.2484 to align # Constraint # added constraint: constraint((T0310)G213.CA, (T0310)G367.CA) [> 4.5371 = 7.5618 < 9.8303] w=0.2484 to align # Constraint # added constraint: constraint((T0310)Y288.CB, (T0310)C305.CB) [> 2.6994 = 4.4990 < 5.8487] w=0.2484 to align # Constraint # added constraint: constraint((T0310)F119.CB, (T0310)A131.CB) [> 4.1101 = 6.8501 < 8.9052] w=0.2484 to align # Constraint # added constraint: constraint((T0310)E106.CB, (T0310)L395.CB) [> 4.6998 = 7.8330 < 10.1829] w=0.2277 to align # Constraint # added constraint: constraint((T0310)T159.CB, (T0310)A171.CB) [> 4.2729 = 7.1214 < 9.2579] w=0.2277 to align # Constraint # added constraint: constraint((T0310)L43.CB, (T0310)L61.CB) [> 3.6028 = 6.0047 < 7.8061] w=0.2277 to align # Constraint # added constraint: constraint((T0310)L65.CB, (T0310)G282.CA) [> 3.8343 = 6.3904 < 8.3076] w=0.2277 to align # Constraint # added constraint: constraint((T0310)I77.CB, (T0310)A354.CB) [> 3.6539 = 6.0898 < 7.9168] w=0.2277 to align # Constraint # added constraint: constraint((T0310)Q81.CB, (T0310)A354.CB) [> 2.8677 = 4.7795 < 6.2133] w=0.2277 to align # Constraint # added constraint: constraint((T0310)L115.CB, (T0310)I377.CB) [> 4.1013 = 6.8356 < 8.8862] w=0.2277 to align # Constraint # added constraint: constraint((T0310)P123.CB, (T0310)G145.CA) [> 4.2365 = 7.0609 < 9.1791] w=0.2277 to align # Constraint # added constraint: constraint((T0310)L132.CB, (T0310)G381.CA) [> 4.0153 = 6.6921 < 8.6998] w=0.2277 to align # Constraint # added constraint: constraint((T0310)Q5.CB, (T0310)E170.CB) [> 4.5261 = 7.5434 < 9.8065] w=0.2277 to align # Constraint # added constraint: constraint((T0310)A249.CB, (T0310)R357.CB) [> 4.1281 = 6.8802 < 8.9443] w=0.2277 to align # Constraint # added constraint: constraint((T0310)G213.CA, (T0310)H326.CB) [> 4.6429 = 7.7381 < 10.0595] w=0.2277 to align # Constraint # added constraint: constraint((T0310)D346.CB, (T0310)A368.CB) [> 4.1852 = 6.9752 < 9.0678] w=0.2277 to align # Constraint # added constraint: constraint((T0310)V110.CB, (T0310)G381.CA) [> 3.8709 = 6.4515 < 8.3869] w=0.2277 to align # Constraint # added constraint: constraint((T0310)V199.CB, (T0310)S373.CB) [> 4.1692 = 6.9486 < 9.0332] w=0.2277 to align # Constraint # added constraint: constraint((T0310)H280.CB, (T0310)D301.CB) [> 3.6926 = 6.1544 < 8.0007] w=0.2277 to align # Constraint # added constraint: constraint((T0310)H280.CB, (T0310)L302.CB) [> 3.5136 = 5.8560 < 7.6128] w=0.2277 to align # Constraint # added constraint: constraint((T0310)P283.CB, (T0310)E303.CB) [> 2.4891 = 4.1485 < 5.3930] w=0.2277 to align # Constraint # added constraint: constraint((T0310)K284.CB, (T0310)L304.CB) [> 3.0457 = 5.0762 < 6.5991] w=0.2277 to align # Constraint # added constraint: constraint((T0310)F285.CB, (T0310)S294.CB) [> 3.8011 = 6.3351 < 8.2356] w=0.2277 to align # Constraint # added constraint: constraint((T0310)F285.CB, (T0310)E303.CB) [> 4.0067 = 6.6778 < 8.6812] w=0.2277 to align # Constraint # added constraint: constraint((T0310)F285.CB, (T0310)L304.CB) [> 4.0321 = 6.7201 < 8.7362] w=0.2277 to align # Constraint # added constraint: constraint((T0310)A286.CB, (T0310)I306.CB) [> 2.9114 = 4.8524 < 6.3081] w=0.2277 to align # Constraint # added constraint: constraint((T0310)S74.CB, (T0310)D360.CB) [> 4.5470 = 7.5783 < 9.8518] w=0.2070 to align # Constraint # added constraint: constraint((T0310)P210.CB, (T0310)R376.CB) [> 4.2446 = 7.0744 < 9.1967] w=0.2070 to align # Constraint # added constraint: constraint((T0310)L289.CB, (T0310)E307.CB) [> 4.4660 = 7.4433 < 9.6763] w=0.2070 to align # Constraint # added constraint: constraint((T0310)G78.CA, (T0310)A354.CB) [> 3.1344 = 5.2240 < 6.7912] w=0.2070 to align # Constraint # added constraint: constraint((T0310)P123.CB, (T0310)G144.CA) [> 4.2065 = 7.0108 < 9.1140] w=0.2070 to align # Constraint # added constraint: constraint((T0310)M212.CB, (T0310)G367.CA) [> 4.2984 = 7.1640 < 9.3132] w=0.2070 to align # Constraint # added constraint: constraint((T0310)I27.CB, (T0310)L163.CB) [> 4.0112 = 6.6854 < 8.6910] w=0.2070 to align # Constraint # added constraint: constraint((T0310)L155.CB, (T0310)L174.CB) [> 4.3032 = 7.1720 < 9.3236] w=0.2070 to align # Constraint # added constraint: constraint((T0310)L31.CB, (T0310)A76.CB) [> 3.9358 = 6.5597 < 8.5276] w=0.2070 to align # Constraint # added constraint: constraint((T0310)I28.CB, (T0310)A162.CB) [> 4.4797 = 7.4662 < 9.7061] w=0.2070 to align # Constraint # added constraint: constraint((T0310)R363.CB, (T0310)G384.CA) [> 3.7960 = 6.3267 < 8.2247] w=0.2070 to align # Constraint # added constraint: constraint((T0310)T374.CB, (T0310)V383.CB) [> 2.6597 = 4.4329 < 5.7627] w=0.2070 to align # Constraint # added constraint: constraint((T0310)T374.CB, (T0310)G384.CA) [> 3.4890 = 5.8151 < 7.5596] w=0.2070 to align # Constraint # added constraint: constraint((T0310)G145.CA, (T0310)N176.CB) [> 4.6484 = 7.7473 < 10.0715] w=0.2070 to align # Constraint # added constraint: constraint((T0310)S287.CB, (T0310)I306.CB) [> 4.5118 = 7.5196 < 9.7755] w=0.2070 to align # Constraint # added constraint: constraint((T0310)C241.CB, (T0310)L302.CB) [> 3.8978 = 6.4963 < 8.4451] w=0.2070 to align # Constraint # added constraint: constraint((T0310)M271.CB, (T0310)L304.CB) [> 4.3080 = 7.1799 < 9.3339] w=0.2070 to align # Constraint # added constraint: constraint((T0310)D346.CB, (T0310)G361.CA) [> 4.1239 = 6.8731 < 8.9351] w=0.2070 to align # Constraint # added constraint: constraint((T0310)D346.CB, (T0310)G367.CA) [> 4.1239 = 6.8731 < 8.9351] w=0.2070 to align # Constraint # added constraint: constraint((T0310)D346.CB, (T0310)E369.CB) [> 3.2327 = 5.3878 < 7.0041] w=0.2070 to align # Constraint # added constraint: constraint((T0310)A354.CB, (T0310)V370.CB) [> 2.9649 = 4.9415 < 6.4240] w=0.2070 to align # Constraint # added constraint: constraint((T0310)S355.CB, (T0310)G371.CA) [> 3.6506 = 6.0843 < 7.9096] w=0.2070 to align # Constraint # added constraint: constraint((T0310)F358.CB, (T0310)A368.CB) [> 3.8455 = 6.4092 < 8.3319] w=0.2070 to align # Constraint # added constraint: constraint((T0310)E335.CB, (T0310)W352.CB) [> 3.5307 = 5.8845 < 7.6499] w=0.1925 to align # Constraint # added constraint: constraint((T0310)V232.CB, (T0310)I268.CB) [> 3.7974 = 6.3290 < 8.2277] w=0.1905 to align # Constraint # added constraint: constraint((T0310)L62.CB, (T0310)L72.CB) [> 3.4681 = 5.7801 < 7.5142] w=0.1884 to align # Constraint # added constraint: constraint((T0310)V108.CB, (T0310)W393.CB) [> 4.6800 = 7.8001 < 10.1401] w=0.1863 to align # Constraint # added constraint: constraint((T0310)C349.CB, (T0310)Y362.CB) [> 4.4570 = 7.4283 < 9.6568] w=0.1863 to align # Constraint # added constraint: constraint((T0310)A249.CB, (T0310)T327.CB) [> 4.5305 = 7.5508 < 9.8160] w=0.1863 to align # Constraint # added constraint: constraint((T0310)V236.CB, (T0310)L304.CB) [> 4.2070 = 7.0117 < 9.1152] w=0.1863 to align # Constraint # added constraint: constraint((T0310)E52.CB, (T0310)P123.CB) [> 4.6208 = 7.7014 < 10.0118] w=0.1863 to align # Constraint # added constraint: constraint((T0310)Q23.CB, (T0310)H166.CB) [> 4.0963 = 6.8272 < 8.8754] w=0.1863 to align # Constraint # added constraint: constraint((T0310)L163.CB, (T0310)V172.CB) [> 3.8340 = 6.3899 < 8.3069] w=0.1863 to align # Constraint # added constraint: constraint((T0310)D224.CB, (T0310)A338.CB) [> 4.6541 = 7.7568 < 10.0838] w=0.1863 to align # Constraint # added constraint: constraint((T0310)V211.CB, (T0310)S373.CB) [> 4.2559 = 7.0932 < 9.2211] w=0.1863 to align # Constraint # added constraint: constraint((T0310)E104.CB, (T0310)L385.CB) [> 3.2276 = 5.3793 < 6.9931] w=0.1863 to align # Constraint # added constraint: constraint((T0310)L105.CB, (T0310)V383.CB) [> 4.1956 = 6.9927 < 9.0905] w=0.1863 to align # Constraint # added constraint: constraint((T0310)E106.CB, (T0310)G384.CA) [> 4.2406 = 7.0676 < 9.1880] w=0.1863 to align # Constraint # added constraint: constraint((T0310)V108.CB, (T0310)V383.CB) [> 4.1545 = 6.9242 < 9.0015] w=0.1863 to align # Constraint # added constraint: constraint((T0310)V110.CB, (T0310)R380.CB) [> 4.4437 = 7.4062 < 9.6281] w=0.1863 to align # Constraint # added constraint: constraint((T0310)S287.CB, (T0310)V308.CB) [> 4.2312 = 7.0521 < 9.1677] w=0.1863 to align # Constraint # added constraint: constraint((T0310)H326.CB, (T0310)E369.CB) [> 4.4474 = 7.4123 < 9.6360] w=0.1863 to align # Constraint # added constraint: constraint((T0310)E52.CB, (T0310)L65.CB) [> 4.5639 = 7.6065 < 9.8885] w=0.1863 to align # Constraint # added constraint: constraint((T0310)L103.CB, (T0310)G384.CA) [> 3.7275 = 6.2125 < 8.0762] w=0.1863 to align # Constraint # added constraint: constraint((T0310)E333.CB, (T0310)N353.CB) [> 4.7477 = 7.9128 < 10.2867] w=0.1698 to align # Constraint # added constraint: constraint((T0310)I190.CB, (T0310)G213.CA) [> 4.6769 = 7.7948 < 10.1333] w=0.1677 to align # Constraint # added constraint: constraint((T0310)R237.CB, (T0310)L272.CB) [> 4.0657 = 6.7762 < 8.8090] w=0.1677 to align # Constraint # added constraint: constraint((T0310)L43.CB, (T0310)N73.CB) [> 3.2472 = 5.4119 < 7.0355] w=0.1656 to align # Constraint # added constraint: constraint((T0310)A53.CB, (T0310)C241.CB) [> 4.5790 = 7.6317 < 9.9212] w=0.1656 to align # Constraint # added constraint: constraint((T0310)L31.CB, (T0310)G167.CA) [> 4.6095 = 7.6825 < 9.9873] w=0.1656 to align # Constraint # added constraint: constraint((T0310)S373.CB, (T0310)G384.CA) [> 4.5639 = 7.6066 < 9.8885] w=0.1656 to align # Constraint # added constraint: constraint((T0310)N102.CB, (T0310)E386.CB) [> 3.8891 = 6.4819 < 8.4265] w=0.1656 to align # Constraint # added constraint: constraint((T0310)Y288.CB, (T0310)L302.CB) [> 4.6910 = 7.8183 < 10.1638] w=0.1656 to align # Constraint # added constraint: constraint((T0310)L126.CB, (T0310)R193.CB) [> 3.2457 = 5.4095 < 7.0324] w=0.1656 to align # Constraint # added constraint: constraint((T0310)G213.CA, (T0310)E369.CB) [> 4.5581 = 7.5969 < 9.8760] w=0.1656 to align # Constraint # added constraint: constraint((T0310)R122.CB, (T0310)A148.CB) [> 4.4751 = 7.4585 < 9.6960] w=0.1656 to align # Constraint # added constraint: constraint((T0310)K231.CB, (T0310)A354.CB) [> 4.4739 = 7.4564 < 9.6934] w=0.1470 to align # Constraint # added constraint: constraint((T0310)L61.CB, (T0310)L72.CB) [> 4.0714 = 6.7856 < 8.8212] w=0.1470 to align # Constraint # added constraint: constraint((T0310)A348.CB, (T0310)R363.CB) [> 4.0767 = 6.7946 < 8.8330] w=0.1449 to align # Constraint # added constraint: constraint((T0310)F364.CB, (T0310)P382.CB) [> 3.7615 = 6.2691 < 8.1499] w=0.1449 to align # Constraint # added constraint: constraint((T0310)F364.CB, (T0310)V383.CB) [> 3.9452 = 6.5754 < 8.5480] w=0.1449 to align # Constraint # added constraint: constraint((T0310)L31.CB, (T0310)E161.CB) [> 4.5871 = 7.6451 < 9.9386] w=0.1449 to align # Constraint # added constraint: constraint((T0310)E275.CB, (T0310)L302.CB) [> 4.0381 = 6.7301 < 8.7492] w=0.1449 to align # Constraint # added constraint: constraint((T0310)I28.CB, (T0310)A76.CB) [> 3.3268 = 5.5446 < 7.2080] w=0.1449 to align # Constraint # added constraint: constraint((T0310)K185.CB, (T0310)A206.CB) [> 4.0786 = 6.7976 < 8.8369] w=0.1449 to align # Constraint # added constraint: constraint((T0310)S89.CB, (T0310)P382.CB) [> 3.9773 = 6.6289 < 8.6175] w=0.1449 to align # Constraint # added constraint: constraint((T0310)T252.CB, (T0310)Y288.CB) [> 4.5931 = 7.6551 < 9.9517] w=0.1449 to align # Constraint # added constraint: constraint((T0310)G78.CA, (T0310)V370.CB) [> 4.1127 = 6.8545 < 8.9108] w=0.1449 to align # Constraint # added constraint: constraint((T0310)G213.CA, (T0310)A368.CB) [> 4.2228 = 7.0380 < 9.1494] w=0.1449 to align # Constraint # added constraint: constraint((T0310)G365.CA, (T0310)G384.CA) [> 4.1216 = 6.8694 < 8.9302] w=0.1449 to align # Constraint # added constraint: constraint((T0310)F119.CB, (T0310)P192.CB) [> 3.9746 = 6.6243 < 8.6116] w=0.1304 to align # Constraint # added constraint: constraint((T0310)E120.CB, (T0310)S195.CB) [> 4.4297 = 7.3829 < 9.5977] w=0.1304 to align # Constraint # added constraint: constraint((T0310)I255.CB, (T0310)A315.CB) [> 4.5140 = 7.5233 < 9.7803] w=0.1304 to align # Constraint # added constraint: constraint((T0310)L235.CB, (T0310)F351.CB) [> 4.5323 = 7.5539 < 9.8200] w=0.1284 to align # Constraint # added constraint: constraint((T0310)R200.CB, (T0310)S215.CB) [> 4.1869 = 6.9782 < 9.0717] w=0.1284 to align # Constraint # added constraint: constraint((T0310)A76.CB, (T0310)P127.CB) [> 4.1058 = 6.8430 < 8.8959] w=0.1284 to align # Constraint # added constraint: constraint((T0310)F265.CB, (T0310)V308.CB) [> 4.1657 = 6.9429 < 9.0258] w=0.1284 to align # Constraint # added constraint: constraint((T0310)P123.CB, (T0310)H150.CB) [> 4.3665 = 7.2775 < 9.4607] w=0.1263 to align # Constraint # added constraint: constraint((T0310)R96.CB, (T0310)L395.CB) [> 4.2634 = 7.1057 < 9.2374] w=0.1242 to align # Constraint # added constraint: constraint((T0310)E52.CB, (T0310)L62.CB) [> 3.4387 = 5.7311 < 7.4505] w=0.1242 to align # Constraint # added constraint: constraint((T0310)E52.CB, (T0310)Y243.CB) [> 4.0999 = 6.8331 < 8.8830] w=0.1242 to align # Constraint # added constraint: constraint((T0310)A315.CB, (T0310)T337.CB) [> 4.7760 = 7.9599 < 10.3479] w=0.1242 to align # Constraint # added constraint: constraint((T0310)E120.CB, (T0310)H214.CB) [> 4.5946 = 7.6577 < 9.9550] w=0.1242 to align # Constraint # added constraint: constraint((T0310)E179.CB, (T0310)I202.CB) [> 4.4870 = 7.4784 < 9.7219] w=0.1242 to align # Constraint # added constraint: constraint((T0310)F364.CB, (T0310)R380.CB) [> 3.1890 = 5.3151 < 6.9096] w=0.1242 to align # Constraint # added constraint: constraint((T0310)F358.CB, (T0310)G371.CA) [> 3.9407 = 6.5679 < 8.5382] w=0.1242 to align # Constraint # added constraint: constraint((T0310)P21.CB, (T0310)A83.CB) [> 3.5668 = 5.9447 < 7.7281] w=0.1242 to align # Constraint # added constraint: constraint((T0310)E41.CB, (T0310)L158.CB) [> 4.4924 = 7.4874 < 9.7336] w=0.1242 to align # Constraint # added constraint: constraint((T0310)I118.CB, (T0310)L198.CB) [> 4.4181 = 7.3635 < 9.5725] w=0.1242 to align # Constraint # added constraint: constraint((T0310)L140.CB, (T0310)I191.CB) [> 4.7406 = 7.9010 < 10.2713] w=0.1242 to align # Constraint # added constraint: constraint((T0310)V229.CB, (T0310)V331.CB) [> 4.7508 = 7.9180 < 10.2934] w=0.1242 to align # Constraint # added constraint: constraint((T0310)E251.CB, (T0310)L295.CB) [> 4.7679 = 7.9464 < 10.3304] w=0.1242 to align # Constraint # added constraint: constraint((T0310)A315.CB, (T0310)I330.CB) [> 4.5871 = 7.6452 < 9.9388] w=0.1242 to align # Constraint # added constraint: constraint((T0310)I191.CB, (T0310)S373.CB) [> 4.6155 = 7.6925 < 10.0003] w=0.1242 to align # Constraint # added constraint: constraint((T0310)L31.CB, (T0310)I134.CB) [> 4.5335 = 7.5559 < 9.8226] w=0.1242 to align # Constraint # added constraint: constraint((T0310)L31.CB, (T0310)L155.CB) [> 4.7477 = 7.9128 < 10.2866] w=0.1242 to align # Constraint # added constraint: constraint((T0310)S225.CB, (T0310)L260.CB) [> 2.9148 = 4.8579 < 6.3153] w=0.1056 to align # Constraint # added constraint: constraint((T0310)H326.CB, (T0310)F358.CB) [> 3.9585 = 6.5974 < 8.5766] w=0.1056 to align # Constraint # added constraint: constraint((T0310)C349.CB, (T0310)A368.CB) [> 4.5044 = 7.5073 < 9.7594] w=0.1056 to align # Constraint # added constraint: constraint((T0310)I118.CB, (T0310)E180.CB) [> 4.0230 = 6.7050 < 8.7166] w=0.1056 to align # Constraint # added constraint: constraint((T0310)Q160.CB, (T0310)A171.CB) [> 4.6089 = 7.6815 < 9.9860] w=0.1035 to align # Constraint # added constraint: constraint((T0310)E52.CB, (T0310)R122.CB) [> 4.6942 = 7.8236 < 10.1707] w=0.1035 to align # Constraint # added constraint: constraint((T0310)L94.CB, (T0310)T391.CB) [> 3.8328 = 6.3880 < 8.3044] w=0.1035 to align # Constraint # added constraint: constraint((T0310)I99.CB, (T0310)L395.CB) [> 4.2388 = 7.0647 < 9.1841] w=0.1035 to align # Constraint # added constraint: constraint((T0310)Y362.CB, (T0310)V383.CB) [> 4.4679 = 7.4465 < 9.6804] w=0.1035 to align # Constraint # added constraint: constraint((T0310)G78.CA, (T0310)L126.CB) [> 4.4209 = 7.3682 < 9.5786] w=0.1035 to align # Constraint # added constraint: constraint((T0310)A286.CB, (T0310)C305.CB) [> 4.6600 = 7.7667 < 10.0968] w=0.1035 to align # Constraint # added constraint: constraint((T0310)A286.CB, (T0310)V308.CB) [> 4.6100 = 7.6834 < 9.9884] w=0.1035 to align # Constraint # added constraint: constraint((T0310)M15.CB, (T0310)A171.CB) [> 3.6216 = 6.0360 < 7.8468] w=0.1035 to align # Constraint # added constraint: constraint((T0310)L140.CB, (T0310)E170.CB) [> 3.1700 = 5.2834 < 6.8684] w=0.0890 to align # Constraint # added constraint: constraint((T0310)L142.CB, (T0310)A171.CB) [> 4.2387 = 7.0645 < 9.1839] w=0.0890 to align # Constraint # added constraint: constraint((T0310)K143.CB, (T0310)A171.CB) [> 4.3530 = 7.2551 < 9.4316] w=0.0890 to align # Constraint # added constraint: constraint((T0310)P123.CB, (T0310)A149.CB) [> 4.5636 = 7.6060 < 9.8878] w=0.0849 to align # Constraint # added constraint: constraint((T0310)V90.CB, (T0310)L385.CB) [> 3.5985 = 5.9975 < 7.7967] w=0.0849 to align # Constraint # added constraint: constraint((T0310)V370.CB, (T0310)V383.CB) [> 2.5515 = 4.2524 < 5.5282] w=0.0849 to align # Constraint # added constraint: constraint((T0310)L366.CB, (T0310)R380.CB) [> 2.9145 = 4.8574 < 6.3147] w=0.0828 to align # Constraint # added constraint: constraint((T0310)E52.CB, (T0310)C241.CB) [> 4.4941 = 7.4901 < 9.7372] w=0.0828 to align # Constraint # added constraint: constraint((T0310)V277.CB, (T0310)L302.CB) [> 3.0725 = 5.1209 < 6.6571] w=0.0828 to align # Constraint # added constraint: constraint((T0310)Q276.CB, (T0310)A286.CB) [> 4.1807 = 6.9679 < 9.0582] w=0.0828 to align # Constraint # added constraint: constraint((T0310)G113.CA, (T0310)L388.CB) [> 4.5539 = 7.5899 < 9.8669] w=0.0828 to align # Constraint # added constraint: constraint((T0310)V93.CB, (T0310)L414.CB) [> 3.2336 = 5.3893 < 7.0061] w=0.0828 to align # Constraint # added constraint: constraint((T0310)V93.CB, (T0310)Y413.CB) [> 3.6316 = 6.0527 < 7.8685] w=0.0828 to align # Constraint # added constraint: constraint((T0310)V211.CB, (T0310)G367.CA) [> 4.6712 = 7.7853 < 10.1209] w=0.0828 to align # Constraint # added constraint: constraint((T0310)L116.CB, (T0310)L183.CB) [> 4.5191 = 7.5318 < 9.7913] w=0.0828 to align # Constraint # added constraint: constraint((T0310)A100.CB, (T0310)L395.CB) [> 4.3570 = 7.2616 < 9.4401] w=0.0828 to align # Constraint # added constraint: constraint((T0310)I82.CB, (T0310)A354.CB) [> 4.5396 = 7.5660 < 9.8358] w=0.0828 to align # Constraint # added constraint: constraint((T0310)P210.CB, (T0310)L388.CB) [> 4.6055 = 7.6758 < 9.9785] w=0.0828 to align # Constraint # added constraint: constraint((T0310)I190.CB, (T0310)A205.CB) [> 4.7642 = 7.9403 < 10.3224] w=0.0828 to align # Constraint # added constraint: constraint((T0310)E52.CB, (T0310)R64.CB) [> 2.8621 = 4.7702 < 6.2012] w=0.0828 to align # Constraint # added constraint: constraint((T0310)L43.CB, (T0310)R64.CB) [> 2.5121 = 4.1869 < 5.4430] w=0.0828 to align # Constraint # added constraint: constraint((T0310)L31.CB, (T0310)L163.CB) [> 4.5591 = 7.5984 < 9.8780] w=0.0828 to align # Constraint # added constraint: constraint((T0310)L31.CB, (T0310)P127.CB) [> 4.3392 = 7.2320 < 9.4015] w=0.0828 to align # Constraint # added constraint: constraint((T0310)H30.CB, (T0310)L163.CB) [> 4.2181 = 7.0302 < 9.1393] w=0.0828 to align # Constraint # added constraint: constraint((T0310)L19.CB, (T0310)K169.CB) [> 4.3600 = 7.2667 < 9.4467] w=0.0828 to align # Constraint # added constraint: constraint((T0310)E7.CB, (T0310)E170.CB) [> 4.6810 = 7.8017 < 10.1422] w=0.0828 to align # Constraint # added constraint: constraint((T0310)M212.CB, (T0310)V383.CB) [> 3.6045 = 6.0075 < 7.8098] w=0.0828 to align # Constraint # added constraint: constraint((T0310)V312.CB, (T0310)D334.CB) [> 4.7927 = 7.9879 < 10.3842] w=0.0683 to align # Constraint # added constraint: constraint((T0310)E120.CB, (T0310)K143.CB) [> 4.3864 = 7.3108 < 9.5040] w=0.0683 to align # Constraint # added constraint: constraint((T0310)E120.CB, (T0310)G144.CA) [> 4.7471 = 7.9118 < 10.2854] w=0.0683 to align # Constraint # added constraint: constraint((T0310)L140.CB, (T0310)I187.CB) [> 4.1469 = 6.9116 < 8.9850] w=0.0683 to align # Constraint # added constraint: constraint((T0310)G145.CA, (T0310)L174.CB) [> 4.6917 = 7.8194 < 10.1653] w=0.0683 to align # Constraint # added constraint: constraint((T0310)F119.CB, (T0310)L141.CB) [> 3.7552 = 6.2586 < 8.1362] w=0.0683 to align # Constraint # added constraint: constraint((T0310)V117.CB, (T0310)G139.CA) [> 4.2130 = 7.0216 < 9.1281] w=0.0683 to align # Constraint # added constraint: constraint((T0310)L116.CB, (T0310)G139.CA) [> 4.3059 = 7.1765 < 9.3294] w=0.0683 to align # Constraint # added constraint: constraint((T0310)A17.CB, (T0310)D314.CB) [> 4.7814 = 7.9691 < 10.3598] w=0.0683 to align # Constraint # added constraint: constraint((T0310)A17.CB, (T0310)V309.CB) [> 4.6883 = 7.8138 < 10.1580] w=0.0683 to align # Constraint # added constraint: constraint((T0310)L16.CB, (T0310)V309.CB) [> 3.3635 = 5.6058 < 7.2875] w=0.0683 to align # Constraint # added constraint: constraint((T0310)N336.CB, (T0310)W352.CB) [> 3.4364 = 5.7274 < 7.4456] w=0.0683 to align # Constraint # added constraint: constraint((T0310)D328.CB, (T0310)A348.CB) [> 4.6106 = 7.6843 < 9.9896] w=0.0683 to align # Constraint # added constraint: constraint((T0310)H326.CB, (T0310)F351.CB) [> 4.1701 = 6.9502 < 9.0353] w=0.0683 to align # Constraint # added constraint: constraint((T0310)S325.CB, (T0310)C349.CB) [> 4.3442 = 7.2403 < 9.4124] w=0.0683 to align # Constraint # added constraint: constraint((T0310)I316.CB, (T0310)A338.CB) [> 3.6662 = 6.1104 < 7.9435] w=0.0683 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)E335.CB) [> 4.7717 = 7.9528 < 10.3387] w=0.0683 to align # Constraint # added constraint: constraint((T0310)Y222.CB, (T0310)A338.CB) [> 4.3845 = 7.3074 < 9.4997] w=0.0683 to align # Constraint # added constraint: constraint((T0310)I27.CB, (T0310)C305.CB) [> 4.0982 = 6.8303 < 8.8794] w=0.0663 to align # Constraint # added constraint: constraint((T0310)H220.CB, (T0310)H326.CB) [> 3.6000 = 6.0001 < 7.8001] w=0.0663 to align # Constraint # added constraint: constraint((T0310)I191.CB, (T0310)V383.CB) [> 4.3867 = 7.3112 < 9.5045] w=0.0642 to align # Constraint # added constraint: constraint((T0310)R234.CB, (T0310)F351.CB) [> 4.5640 = 7.6067 < 9.8887] w=0.0642 to align # Constraint # added constraint: constraint((T0310)I269.CB, (T0310)I306.CB) [> 4.0434 = 6.7390 < 8.7608] w=0.0642 to align # Constraint # added constraint: constraint((T0310)L16.CB, (T0310)G113.CA) [> 4.7778 = 7.9630 < 10.3519] w=0.0621 to align # Constraint # added constraint: constraint((T0310)L19.CB, (T0310)P111.CB) [> 4.4731 = 7.4552 < 9.6918] w=0.0621 to align # Constraint # added constraint: constraint((T0310)M15.CB, (T0310)G139.CA) [> 4.6718 = 7.7864 < 10.1223] w=0.0621 to align # Constraint # added constraint: constraint((T0310)A9.CB, (T0310)I187.CB) [> 4.7792 = 7.9653 < 10.3548] w=0.0621 to align # Constraint # added constraint: constraint((T0310)L366.CB, (T0310)V383.CB) [> 4.5864 = 7.6440 < 9.9372] w=0.0621 to align # Constraint # added constraint: constraint((T0310)I42.CB, (T0310)L158.CB) [> 4.0648 = 6.7746 < 8.8070] w=0.0621 to align # Constraint # added constraint: constraint((T0310)G361.CA, (T0310)V383.CB) [> 4.3079 = 7.1798 < 9.3337] w=0.0621 to align # Constraint # added constraint: constraint((T0310)S287.CB, (T0310)L302.CB) [> 3.4963 = 5.8271 < 7.5752] w=0.0621 to align # Constraint # added constraint: constraint((T0310)L163.CB, (T0310)Q173.CB) [> 4.1320 = 6.8866 < 8.9526] w=0.0621 to align # Constraint # added constraint: constraint((T0310)T1.CB, (T0310)N176.CB) [> 3.7370 = 6.2284 < 8.0969] w=0.0621 to align # Constraint # added constraint: constraint((T0310)L43.CB, (T0310)L67.CB) [> 4.0170 = 6.6950 < 8.7035] w=0.0621 to align # Constraint # added constraint: constraint((T0310)L31.CB, (T0310)I165.CB) [> 4.6462 = 7.7437 < 10.0669] w=0.0621 to align # Constraint # added constraint: constraint((T0310)S294.CB, (T0310)L304.CB) [> 4.7437 = 7.9062 < 10.2780] w=0.0621 to align # Constraint # added constraint: constraint((T0310)V277.CB, (T0310)L304.CB) [> 3.6559 = 6.0932 < 7.9212] w=0.0621 to align # Constraint # added constraint: constraint((T0310)V277.CB, (T0310)E303.CB) [> 3.6154 = 6.0258 < 7.8335] w=0.0621 to align # Constraint # added constraint: constraint((T0310)T233.CB, (T0310)I269.CB) [> 4.6037 = 7.6727 < 9.9746] w=0.0621 to align # Constraint # added constraint: constraint((T0310)V232.CB, (T0310)I255.CB) [> 4.7351 = 7.8918 < 10.2594] w=0.0621 to align # Constraint # added constraint: constraint((T0310)S225.CB, (T0310)D334.CB) [> 4.4306 = 7.3843 < 9.5996] w=0.0621 to align # Constraint # added constraint: constraint((T0310)S225.CB, (T0310)N311.CB) [> 4.5273 = 7.5454 < 9.8091] w=0.0621 to align # Constraint # added constraint: constraint((T0310)S373.CB, (T0310)E386.CB) [> 4.5062 = 7.5103 < 9.7634] w=0.0621 to align # Constraint # added constraint: constraint((T0310)A368.CB, (T0310)L385.CB) [> 4.6480 = 7.7467 < 10.0707] w=0.0621 to align # Constraint # added constraint: constraint((T0310)A338.CB, (T0310)V350.CB) [> 4.7533 = 7.9222 < 10.2989] w=0.0621 to align # Constraint # added constraint: constraint((T0310)P111.CB, (T0310)A133.CB) [> 4.7811 = 7.9685 < 10.3591] w=0.0621 to align # Constraint # added constraint: constraint((T0310)R96.CB, (T0310)L394.CB) [> 4.6950 = 7.8251 < 10.1726] w=0.0621 to align # Constraint # added constraint: constraint((T0310)V90.CB, (T0310)G137.CA) [> 3.5473 = 5.9123 < 7.6859] w=0.0621 to align # Constraint # added constraint: constraint((T0310)M221.CB, (T0310)E251.CB) [> 4.5081 = 7.5135 < 9.7676] w=0.0621 to align # Constraint # added constraint: constraint((T0310)I218.CB, (T0310)C305.CB) [> 4.7529 = 7.9215 < 10.2979] w=0.0621 to align # Constraint # added constraint: constraint((T0310)P192.CB, (T0310)D201.CB) [> 4.7065 = 7.8442 < 10.1975] w=0.0621 to align # Constraint # added constraint: constraint((T0310)K143.CB, (T0310)Q173.CB) [> 4.7473 = 7.9121 < 10.2857] w=0.0621 to align # Constraint # added constraint: constraint((T0310)H326.CB, (T0310)V350.CB) [> 4.7523 = 7.9205 < 10.2966] w=0.0621 to align # Constraint # added constraint: constraint((T0310)P127.CB, (T0310)I154.CB) [> 3.2072 = 5.3453 < 6.9489] w=0.0476 to align # Constraint # added constraint: constraint((T0310)I154.CB, (T0310)I165.CB) [> 3.2208 = 5.3680 < 6.9783] w=0.0455 to align # Constraint # added constraint: constraint((T0310)I154.CB, (T0310)H166.CB) [> 3.7298 = 6.2163 < 8.0812] w=0.0455 to align # Constraint # added constraint: constraint((T0310)L16.CB, (T0310)C305.CB) [> 3.1404 = 5.2340 < 6.8042] w=0.0455 to align # Constraint # added constraint: constraint((T0310)I28.CB, (T0310)Q197.CB) [> 2.7222 = 4.5371 < 5.8982] w=0.0455 to align # Constraint # added constraint: constraint((T0310)I28.CB, (T0310)L198.CB) [> 2.9396 = 4.8994 < 6.3692] w=0.0455 to align # Constraint # added constraint: constraint((T0310)I28.CB, (T0310)D201.CB) [> 3.5021 = 5.8369 < 7.5880] w=0.0455 to align # Constraint # added constraint: constraint((T0310)L31.CB, (T0310)L198.CB) [> 4.3126 = 7.1876 < 9.3439] w=0.0455 to align # Constraint # added constraint: constraint((T0310)A32.CB, (T0310)L198.CB) [> 3.8592 = 6.4320 < 8.3616] w=0.0455 to align # Constraint # added constraint: constraint((T0310)L43.CB, (T0310)L174.CB) [> 3.5382 = 5.8970 < 7.6661] w=0.0455 to align # Constraint # added constraint: constraint((T0310)A246.CB, (T0310)Y299.CB) [> 4.5089 = 7.5148 < 9.7693] w=0.0455 to align # Constraint # added constraint: constraint((T0310)L254.CB, (T0310)C305.CB) [> 3.0969 = 5.1615 < 6.7099] w=0.0455 to align # Constraint # added constraint: constraint((T0310)I255.CB, (T0310)C305.CB) [> 4.4204 = 7.3674 < 9.5776] w=0.0455 to align # Constraint # added constraint: constraint((T0310)L272.CB, (T0310)Y299.CB) [> 4.3905 = 7.3175 < 9.5127] w=0.0455 to align # Constraint # added constraint: constraint((T0310)V277.CB, (T0310)V292.CB) [> 4.0389 = 6.7316 < 8.7510] w=0.0455 to align # Constraint # added constraint: constraint((T0310)I279.CB, (T0310)V292.CB) [> 2.7859 = 4.6431 < 6.0360] w=0.0455 to align # Constraint # added constraint: constraint((T0310)R178.CB, (T0310)S195.CB) [> 3.5505 = 5.9174 < 7.6926] w=0.0455 to align # Constraint # added constraint: constraint((T0310)T233.CB, (T0310)L272.CB) [> 2.6663 = 4.4439 < 5.7770] w=0.0455 to align # Constraint # added constraint: constraint((T0310)D230.CB, (T0310)E275.CB) [> 4.3755 = 7.2925 < 9.4803] w=0.0455 to align # Constraint # added constraint: constraint((T0310)F351.CB, (T0310)D360.CB) [> 4.6097 = 7.6829 < 9.9878] w=0.0435 to align # Constraint # added constraint: constraint((T0310)S355.CB, (T0310)S373.CB) [> 4.1899 = 6.9832 < 9.0782] w=0.0414 to align # Constraint # added constraint: constraint((T0310)T233.CB, (T0310)F265.CB) [> 4.6406 = 7.7343 < 10.0545] w=0.0414 to align # Constraint # added constraint: constraint((T0310)W393.CB, (T0310)V402.CB) [> 4.6312 = 7.7186 < 10.0342] w=0.0414 to align # Constraint # added constraint: constraint((T0310)W393.CB, (T0310)F405.CB) [> 3.6958 = 6.1597 < 8.0076] w=0.0414 to align # Constraint # added constraint: constraint((T0310)L394.CB, (T0310)F405.CB) [> 2.8994 = 4.8324 < 6.2821] w=0.0414 to align # Constraint # added constraint: constraint((T0310)L394.CB, (T0310)L414.CB) [> 3.7458 = 6.2431 < 8.1160] w=0.0414 to align # Constraint # added constraint: constraint((T0310)V108.CB, (T0310)Y413.CB) [> 3.0862 = 5.1436 < 6.6867] w=0.0414 to align # Constraint # added constraint: constraint((T0310)L115.CB, (T0310)G387.CA) [> 3.9767 = 6.6279 < 8.6162] w=0.0414 to align # Constraint # added constraint: constraint((T0310)R95.CB, (T0310)L414.CB) [> 4.0837 = 6.8062 < 8.8480] w=0.0414 to align # Constraint # added constraint: constraint((T0310)I191.CB, (T0310)E369.CB) [> 4.5877 = 7.6462 < 9.9400] w=0.0414 to align # Constraint # added constraint: constraint((T0310)M212.CB, (T0310)T391.CB) [> 3.6122 = 6.0203 < 7.8264] w=0.0414 to align # Constraint # added constraint: constraint((T0310)V93.CB, (T0310)W393.CB) [> 4.5303 = 7.5504 < 9.8155] w=0.0414 to align # Constraint # added constraint: constraint((T0310)L126.CB, (T0310)L174.CB) [> 4.7319 = 7.8866 < 10.2526] w=0.0414 to align # Constraint # added constraint: constraint((T0310)A281.CB, (T0310)I306.CB) [> 2.6320 = 4.3866 < 5.7026] w=0.0414 to align # Constraint # added constraint: constraint((T0310)V292.CB, (T0310)E307.CB) [> 4.7185 = 7.8642 < 10.2235] w=0.0414 to align # Constraint # added constraint: constraint((T0310)F364.CB, (T0310)L385.CB) [> 4.6778 = 7.7964 < 10.1353] w=0.0414 to align # Constraint # added constraint: constraint((T0310)I269.CB, (T0310)I279.CB) [> 3.0449 = 5.0748 < 6.5972] w=0.0414 to align # Constraint # added constraint: constraint((T0310)K278.CB, (T0310)E303.CB) [> 2.8606 = 4.7676 < 6.1979] w=0.0414 to align # Constraint # added constraint: constraint((T0310)K278.CB, (T0310)L304.CB) [> 4.4161 = 7.3601 < 9.5681] w=0.0414 to align # Constraint # added constraint: constraint((T0310)I279.CB, (T0310)E303.CB) [> 4.6095 = 7.6825 < 9.9873] w=0.0414 to align # Constraint # added constraint: constraint((T0310)R178.CB, (T0310)A206.CB) [> 3.6969 = 6.1615 < 8.0100] w=0.0228 to align # Constraint # added constraint: constraint((T0310)P127.CB, (T0310)A354.CB) [> 4.4482 = 7.4138 < 9.6379] w=0.0228 to align # Constraint # added constraint: constraint((T0310)P127.CB, (T0310)A162.CB) [> 3.6801 = 6.1336 < 7.9736] w=0.0228 to align # Constraint # added constraint: constraint((T0310)S121.CB, (T0310)V175.CB) [> 3.7889 = 6.3147 < 8.2092] w=0.0228 to align # Constraint # added constraint: constraint((T0310)S121.CB, (T0310)K143.CB) [> 3.6156 = 6.0260 < 7.8338] w=0.0228 to align # Constraint # added constraint: constraint((T0310)L116.CB, (T0310)T177.CB) [> 2.1155 = 3.5258 < 4.5835] w=0.0228 to align # Constraint # added constraint: constraint((T0310)Q38.CB, (T0310)L198.CB) [> 4.2706 = 7.1177 < 9.2531] w=0.0228 to align # Constraint # added constraint: constraint((T0310)S239.CB, (T0310)F291.CB) [> 2.7556 = 4.5927 < 5.9706] w=0.0228 to align # Constraint # added constraint: constraint((T0310)F351.CB, (T0310)G361.CA) [> 4.3587 = 7.2645 < 9.4439] w=0.0228 to align # Constraint # added constraint: constraint((T0310)R193.CB, (T0310)S355.CB) [> 4.2603 = 7.1004 < 9.2305] w=0.0228 to align # Constraint # added constraint: constraint((T0310)I191.CB, (T0310)S355.CB) [> 4.6259 = 7.7098 < 10.0227] w=0.0228 to align # Constraint # added constraint: constraint((T0310)A9.CB, (T0310)V168.CB) [> 3.8499 = 6.4165 < 8.3415] w=0.0207 to align # Constraint # added constraint: constraint((T0310)S89.CB, (T0310)Y413.CB) [> 2.6306 = 4.3843 < 5.6996] w=0.0207 to align # Constraint # added constraint: constraint((T0310)D238.CB, (T0310)F351.CB) [> 4.7691 = 7.9485 < 10.3331] w=0.0207 to align # Constraint # added constraint: constraint((T0310)K392.CB, (T0310)F405.CB) [> 4.6664 = 7.7774 < 10.1106] w=0.0207 to align # Constraint # added constraint: constraint((T0310)V181.CB, (T0310)A206.CB) [> 3.6875 = 6.1459 < 7.9897] w=0.0207 to align # Constraint # added constraint: constraint((T0310)L183.CB, (T0310)D201.CB) [> 4.7183 = 7.8638 < 10.2229] w=0.0207 to align # Constraint # added constraint: constraint((T0310)K146.CB, (T0310)V175.CB) [> 3.2972 = 5.4953 < 7.1439] w=0.0207 to align # Constraint # added constraint: constraint((T0310)K143.CB, (T0310)L183.CB) [> 3.8579 = 6.4299 < 8.3589] w=0.0207 to align # Constraint # added constraint: constraint((T0310)L43.CB, (T0310)K207.CB) [> 4.1080 = 6.8466 < 8.9006] w=0.0207 to align # Constraint # added constraint: constraint((T0310)A32.CB, (T0310)Q197.CB) [> 3.6623 = 6.1038 < 7.9349] w=0.0207 to align # Constraint # added constraint: constraint((T0310)D188.CB, (T0310)V211.CB) [> 3.7298 = 6.2164 < 8.0813] w=0.0021 to align # Constraint # added constraint: constraint((T0310)I112.CB, (T0310)V211.CB) [> 4.7327 = 7.8879 < 10.2543] w=0.0021 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0310/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0310/decoys/ # ReadConformPDB reading from PDB file rotate180.renum.pdb.gz looking for model 1 # Found a chain break before 399 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file rotateTake2.renum.pdb.gz looking for model 1 # Found a chain break before 420 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../tetramer/decoys/tetramer3-1euhA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 420 # copying to AlignedFragments data structure # naming current conformation tetramer//tetramer3-1euhA # ReadConformPDB reading from PDB file ../tetramer/decoys/tetramer4-1euhA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 420 # copying to AlignedFragments data structure # naming current conformation tetramer//tetramer4-1euhA # ReadConformPDB reading from PDB file ../tetramer/decoys/tetramer5-1euhA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 420 # copying to AlignedFragments data structure # naming current conformation tetramer//tetramer5-1euhA # ReadConformPDB reading from PDB file ../tetramer/decoys/tetramer6-1euhA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 399 # copying to AlignedFragments data structure # naming current conformation tetramer//tetramer6-1euhA # ReadConformPDB reading from PDB file ../tetramer/decoys/tetramer7-1euhA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 399 # copying to AlignedFragments data structure # naming current conformation tetramer//tetramer7-1euhA # ReadConformPDB reading from PDB file ../tetramer/decoys/tetramer8-1euhA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 399 # copying to AlignedFragments data structure # naming current conformation tetramer//tetramer8-1euhA # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 401 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 417 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 369 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 394 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 413 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 357 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 424 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 423 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 393 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 391 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 412 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 412 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 418 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 382 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 382 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 391 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 Skipped atom 254, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 256, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 258, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 260, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 942, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 944, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 946, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 948, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 1490, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 1492, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 1494, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 1496, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 Skipped atom 254, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 256, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 258, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 260, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 942, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 944, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 946, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 948, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 1490, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 1492, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 1494, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 1496, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 406 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 424 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 423 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 411 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 424 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 378 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 403 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 421 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 420 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 391 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 391 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 391 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 404 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 419 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 376 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 420 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 407 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 419 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 421 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 412 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 424 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 421 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 424 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 424 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 424 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 424 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 370 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 374 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 378 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 423 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 421 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 422 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 420 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 420 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 377 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 388 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 372 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 379 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 378 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 417 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 372 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 387 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 383 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 369 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 383 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 Skipped atom 246, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 250, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 252, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 926, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 928, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 930, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 932, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 1474, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 1476, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 1478, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 1480, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 397 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 376 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 376 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 406 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 377 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 413 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 387 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 356 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 380 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 413 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 422 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 424 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 420 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 Skipped atom 246, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 250, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 252, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 926, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 928, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 930, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 932, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 1474, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 1476, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 1478, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 1480, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 373 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 369 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 379 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0310)M186.O and (T0310)I187.N only 0.000 apart, marking (T0310)I187.N as missing # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 422 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0310)R257.O and (T0310)D258.N only 0.000 apart, marking (T0310)D258.N as missing WARNING: atoms too close: (T0310)L411.O and (T0310)K412.N only 0.000 apart, marking (T0310)K412.N as missing # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0310)D360.O and (T0310)G361.N only 0.000 apart, marking (T0310)G361.N as missing WARNING: atoms too close: (T0310)G409.O and (T0310)S410.N only 0.000 apart, marking (T0310)S410.N as missing WARNING: atoms too close: (T0310)P421.O and (T0310)Q422.N only 0.000 apart, marking (T0310)Q422.N as missing # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0310)I191.O and (T0310)P192.N only 0.000 apart, marking (T0310)P192.N as missing # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0310 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score -0.1269 model score -0.1262 model score -0.1230 model score -0.1239 model score -0.1239 model score -0.1254 model score -0.1269 model score -0.1262 model score 0.0437 model score -0.0627 model score -0.1136 model score -0.1942 model score -0.1925 model score -0.2094 model score -0.2168 model score -0.2168 model score -0.1320 model score -0.1399 model score 0.1160 model score 0.1200 model score -0.2168 model score -0.1455 model score -0.1310 model score -0.2803 model score -0.2867 model score 0.1787 model score -0.1841 model score 0.1783 model score 1.9581 model score 1.8768 model score 1.8364 model score 1.9918 model score 2.0926 model score 0.0926 model score -0.2676 model score -0.2644 model score -0.2645 model score -0.2676 model score -0.2643 model score -0.2209 model score -0.2598 model score -0.2465 model score -0.1395 model score -0.1709 model score -0.1541 model score -0.0816 model score -0.2494 model score -0.1267 model score -0.3428 model score -0.2746 model score 1.2547 model score 1.2585 model score 1.2548 model score 1.2581 model score 1.2603 model score -0.2611 model score -0.2450 model score -0.2579 model score -0.2602 model score -0.2297 model score -0.2452 model score -0.2465 model score -0.2450 model score -0.2598 model score -0.2579 model score -0.3906 model score -0.3996 model score 0.1892 model score 0.2088 model score 0.1676 model score 1.2583 model score 1.2604 model score 1.2563 model score 1.2687 model score 1.2564 model score 1.2561 model score 1.2563 model score 1.2578 model score 1.2687 model score 1.2564 model score 2.4893 model score 2.5093 model score 2.4264 model score 2.6164 model score 2.2577 model score -0.2491 model score -0.1845 model score 0.6330 model score 1.2795 model score 1.1405 model score 1.2539 model score 1.2607 model score 1.2552 model score 1.2771 model score 1.2867 model score -0.2627 model score -0.2879 model score -0.2901 model score -0.2740 model score -0.1734 model score 0.0422 model score 0.1089 model score 0.1089 model score 0.1098 model score -0.2247 model score -0.0108 model score 0.8262 model score -0.0304 model score 0.9126 model score -0.2172 model score 0.1103 model score -0.0824 model score 0.0990 model score 0.2176 model score -0.2738 model score -0.0032 model score -0.2140 model score -0.1436 model score -0.1670 model score -0.2456 model score -0.2505 model score -0.2451 model score -0.2291 model score -0.2585 model score -0.2344 model score -0.2625 model score -0.2962 model score -0.2869 model score -0.2917 model score -0.2684 model score -0.2766 model score -0.2782 model score -0.2975 model score -0.2913 model score -0.2622 model score -0.3530 model score -0.3757 model score -0.3909 model score -0.3277 model score -0.3639 model score -0.0515 model score -0.3656 model score -0.3408 model score -0.3480 model score -0.3650 model score -0.3453 model score -0.2385 model score -0.2218 model score -0.2268 model score -0.2341 model score -0.2349 model score -0.3150 model score -0.3227 model score -0.3138 model score -0.3401 model score -0.3878 model score -0.1713 model score 0.0253 model score -0.0817 model score 0.2201 model score 0.1898 model score -0.1748 model score -0.0166 model score -0.1245 model score 0.1880 model score 0.1336 model score 0.1116 model score 0.0834 model score -0.0047 model score 0.0101 model score 0.0095 model score -0.2525 model score -0.3437 model score -0.3499 model score -0.3283 model score -0.3195 model score 1.2539 model score 1.2519 model score 1.2520 model score 1.2512 model score 1.2522 model score 1.2515 model score 1.2561 model score 1.2563 model score 1.2539 model score 1.2523 model score -0.1727 model score 0.1213 model score -0.3781 model score -0.4271 model score -0.3233 model score -0.2344 model score -0.3286 model score -0.3291 model score -0.3341 model 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0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.2293 Number of contacts in models: 259 Number of contacts in alignments: 51 NUMB_ALIGNS: 51 Adding 15773 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -740.9099, CN propb: -740.9099 weights: 0.3879 constraints: 1346 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 1346 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 1346 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 14427 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 14427 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 15773 # command: