# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0291/ # command:# Making conformation for sequence T0291 numbered 1 through 310 Created new target T0291 from T0291.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0291/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0291//projects/compbio/experiments/protein-predict/casp7/T0291/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0291//projects/compbio/experiments/protein-predict/casp7/T0291/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0291/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0291/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0291)M140.CB, (T0291)D212.CB) [> 3.4503 = 5.7505 < 7.4756] w=1.0000 to align # Constraint # added constraint: constraint((T0291)M140.CB, (T0291)H150.CB) [> 4.1571 = 6.9285 < 9.0070] w=1.0000 to align # Constraint # added constraint: constraint((T0291)G139.CA, (T0291)V168.CB) [> 3.5685 = 5.9474 < 7.7316] w=1.0000 to align # Constraint # added constraint: constraint((T0291)A137.CB, (T0291)Y216.CB) [> 4.1592 = 6.9320 < 9.0116] w=1.0000 to align # Constraint # added constraint: constraint((T0291)I136.CB, (T0291)Y216.CB) [> 3.9077 = 6.5129 < 8.4667] w=1.0000 to align # Constraint # added constraint: constraint((T0291)I136.CB, (T0291)C166.CB) [> 3.6085 = 6.0142 < 7.8185] w=1.0000 to align # Constraint # added constraint: constraint((T0291)G135.CA, (T0291)C166.CB) [> 3.3197 = 5.5328 < 7.1926] w=1.0000 to align # Constraint # added constraint: constraint((T0291)L133.CB, (T0291)L220.CB) [> 3.3605 = 5.6007 < 7.2810] w=1.0000 to align # Constraint # added constraint: constraint((T0291)M132.CB, (T0291)V223.CB) [> 3.8225 = 6.3709 < 8.2822] w=1.0000 to align # Constraint # added constraint: constraint((T0291)M132.CB, (T0291)C166.CB) [> 3.2056 = 5.3427 < 6.9455] w=1.0000 to align # Constraint # added constraint: constraint((T0291)L129.CB, (T0291)M224.CB) [> 3.5847 = 5.9745 < 7.7668] w=1.0000 to align # Constraint # added constraint: constraint((T0291)L129.CB, (T0291)V223.CB) [> 2.8788 = 4.7979 < 6.2373] w=1.0000 to align # Constraint # added constraint: constraint((T0291)L113.CB, (T0291)I160.CB) [> 3.6574 = 6.0957 < 7.9244] w=1.0000 to align # Constraint # added constraint: constraint((T0291)L113.CB, (T0291)I158.CB) [> 2.4309 = 4.0515 < 5.2670] w=1.0000 to align # Constraint # added constraint: constraint((T0291)L113.CB, (T0291)A155.CB) [> 2.6789 = 4.4649 < 5.8044] w=1.0000 to align # Constraint # added constraint: constraint((T0291)S112.CB, (T0291)L159.CB) [> 3.5203 = 5.8672 < 7.6273] w=1.0000 to align # Constraint # added constraint: constraint((T0291)G93.CA, (T0291)I103.CB) [> 4.2070 = 7.0117 < 9.1152] w=1.0000 to align # Constraint # added constraint: constraint((T0291)E92.CB, (T0291)V104.CB) [> 2.7406 = 4.5677 < 5.9380] w=1.0000 to align # Constraint # added constraint: constraint((T0291)L91.CB, (T0291)V104.CB) [> 4.4143 = 7.3572 < 9.5644] w=1.0000 to align # Constraint # added constraint: constraint((T0291)I89.CB, (T0291)S169.CB) [> 2.8183 = 4.6972 < 6.1063] w=1.0000 to align # Constraint # added constraint: constraint((T0291)I89.CB, (T0291)K167.CB) [> 2.8672 = 4.7786 < 6.2122] w=1.0000 to align # Constraint # added constraint: constraint((T0291)I88.CB, (T0291)V168.CB) [> 3.0476 = 5.0793 < 6.6031] w=1.0000 to align # Constraint # added constraint: constraint((T0291)I88.CB, (T0291)K167.CB) [> 3.6474 = 6.0791 < 7.9028] w=1.0000 to align # Constraint # added constraint: constraint((T0291)I88.CB, (T0291)G139.CA) [> 3.6330 = 6.0550 < 7.8714] w=1.0000 to align # Constraint # added constraint: constraint((T0291)N87.CB, (T0291)G139.CA) [> 2.5619 = 4.2699 < 5.5509] w=1.0000 to align # Constraint # added constraint: constraint((T0291)N87.CB, (T0291)S138.CB) [> 3.2454 = 5.4090 < 7.0317] w=1.0000 to align # Constraint # added constraint: constraint((T0291)W221.CB, (T0291)M263.CB) [> 3.5481 = 5.9135 < 7.6875] w=1.0000 to align # Constraint # added constraint: constraint((T0291)G217.CA, (T0291)C266.CB) [> 2.3531 = 3.9218 < 5.0983] w=1.0000 to align # Constraint # added constraint: constraint((T0291)G217.CA, (T0291)M263.CB) [> 3.2629 = 5.4381 < 7.0695] w=1.0000 to align # Constraint # added constraint: constraint((T0291)Y216.CB, (T0291)C266.CB) [> 3.5364 = 5.8941 < 7.6623] w=1.0000 to align # Constraint # added constraint: constraint((T0291)W214.CB, (T0291)C266.CB) [> 3.6226 = 6.0377 < 7.8489] w=1.0000 to align # Constraint # added constraint: constraint((T0291)V213.CB, (T0291)C266.CB) [> 3.1346 = 5.2243 < 6.7915] w=1.0000 to align # Constraint # added constraint: constraint((T0291)A201.CB, (T0291)S211.CB) [> 3.3100 = 5.5166 < 7.1716] w=1.0000 to align # Constraint # added constraint: constraint((T0291)E200.CB, (T0291)S211.CB) [> 4.0226 = 6.7043 < 8.7156] w=1.0000 to align # Constraint # added constraint: constraint((T0291)S198.CB, (T0291)S215.CB) [> 4.1737 = 6.9562 < 9.0430] w=1.0000 to align # Constraint # added constraint: constraint((T0291)S198.CB, (T0291)W214.CB) [> 2.2402 = 3.7337 < 4.8538] w=1.0000 to align # Constraint # added constraint: constraint((T0291)S198.CB, (T0291)S211.CB) [> 2.5449 = 4.2416 < 5.5141] w=1.0000 to align # Constraint # added constraint: constraint((T0291)W196.CB, (T0291)I218.CB) [> 3.0106 = 5.0176 < 6.5229] w=1.0000 to align # Constraint # added constraint: constraint((T0291)L159.CB, (T0291)S169.CB) [> 3.2081 = 5.3468 < 6.9508] w=1.0000 to align # Constraint # added constraint: constraint((T0291)I158.CB, (T0291)V168.CB) [> 3.6974 = 6.1624 < 8.0112] w=1.0000 to align # Constraint # added constraint: constraint((T0291)M140.CB, (T0291)Y216.CB) [> 3.9502 = 6.5836 < 8.5587] w=1.0000 to align # Constraint # added constraint: constraint((T0291)V149.CB, (T0291)D212.CB) [> 3.5744 = 5.9574 < 7.7446] w=1.0000 to align # Constraint # added constraint: constraint((T0291)H150.CB, (T0291)V168.CB) [> 4.2081 = 7.0135 < 9.1175] w=1.0000 to align # Constraint # added constraint: constraint((T0291)H150.CB, (T0291)D212.CB) [> 3.1644 = 5.2741 < 6.8563] w=1.0000 to align # Constraint # added constraint: constraint((T0291)L153.CB, (T0291)D212.CB) [> 3.3787 = 5.6311 < 7.3204] w=1.0000 to align # Constraint # added constraint: constraint((T0291)L153.CB, (T0291)S215.CB) [> 2.3360 = 3.8934 < 5.0614] w=1.0000 to align # Constraint # added constraint: constraint((T0291)L153.CB, (T0291)Y216.CB) [> 3.6040 = 6.0067 < 7.8087] w=1.0000 to align # Constraint # added constraint: constraint((T0291)L153.CB, (T0291)V219.CB) [> 3.7168 = 6.1947 < 8.0530] w=1.0000 to align # Constraint # added constraint: constraint((T0291)A154.CB, (T0291)S215.CB) [> 4.0722 = 6.7870 < 8.8231] w=1.0000 to align # Constraint # added constraint: constraint((T0291)A154.CB, (T0291)V219.CB) [> 3.8350 = 6.3917 < 8.3092] w=1.0000 to align # Constraint # added constraint: constraint((T0291)A155.CB, (T0291)V219.CB) [> 3.5440 = 5.9066 < 7.6786] w=1.0000 to align # Constraint # added constraint: constraint((T0291)A155.CB, (T0291)E222.CB) [> 3.2994 = 5.4991 < 7.1488] w=1.0000 to align # Constraint # added constraint: constraint((T0291)N157.CB, (T0291)V168.CB) [> 4.0755 = 6.7925 < 8.8302] w=1.0000 to align # Constraint # added constraint: constraint((T0291)N157.CB, (T0291)S169.CB) [> 3.1400 = 5.2333 < 6.8033] w=1.0000 to align # Constraint # added constraint: constraint((T0291)I158.CB, (T0291)K167.CB) [> 4.2985 = 7.1642 < 9.3134] w=1.0000 to align # Constraint # added constraint: constraint((T0291)G81.CA, (T0291)L91.CB) [> 3.1194 = 5.1990 < 6.7587] w=0.9936 to align # Constraint # added constraint: constraint((T0291)I29.CB, (T0291)G44.CA) [> 3.3113 = 5.5188 < 7.1745] w=0.9936 to align # Constraint # added constraint: constraint((T0291)N87.CB, (T0291)G135.CA) [> 3.0793 = 5.1322 < 6.6719] w=0.9936 to align # Constraint # added constraint: constraint((T0291)N87.CB, (T0291)C166.CB) [> 3.6444 = 6.0740 < 7.8962] w=0.9936 to align # Constraint # added constraint: constraint((T0291)N87.CB, (T0291)K167.CB) [> 3.4149 = 5.6915 < 7.3990] w=0.9936 to align # Constraint # added constraint: constraint((T0291)N87.CB, (T0291)V168.CB) [> 3.7505 = 6.2508 < 8.1260] w=0.9936 to align # Constraint # added constraint: constraint((T0291)M80.CB, (T0291)L91.CB) [> 2.5993 = 4.3322 < 5.6318] w=0.9936 to align # Constraint # added constraint: constraint((T0291)G93.CA, (T0291)V104.CB) [> 2.7018 = 4.5029 < 5.8538] w=0.9936 to align # Constraint # added constraint: constraint((T0291)G44.CA, (T0291)S55.CB) [> 3.6814 = 6.1356 < 7.9763] w=0.9872 to align # Constraint # added constraint: constraint((T0291)D114.CB, (T0291)A155.CB) [> 2.3907 = 3.9846 < 5.1800] w=0.9809 to align # Constraint # added constraint: constraint((T0291)R151.CB, (T0291)S211.CB) [> 4.1296 = 6.8827 < 8.9475] w=0.9809 to align # Constraint # added constraint: constraint((T0291)W214.CB, (T0291)W267.CB) [> 3.8466 = 6.4111 < 8.3344] w=0.9809 to align # Constraint # added constraint: constraint((T0291)V32.CB, (T0291)V41.CB) [> 4.3320 = 7.2201 < 9.3861] w=0.9808 to align # Constraint # added constraint: constraint((T0291)L91.CB, (T0291)I103.CB) [> 4.0258 = 6.7097 < 8.7226] w=0.9808 to align # Constraint # added constraint: constraint((T0291)R90.CB, (T0291)E106.CB) [> 2.7266 = 4.5444 < 5.9077] w=0.9808 to align # Constraint # added constraint: constraint((T0291)R90.CB, (T0291)T105.CB) [> 3.8484 = 6.4139 < 8.3381] w=0.9808 to align # Constraint # added constraint: constraint((T0291)I89.CB, (T0291)E106.CB) [> 3.2793 = 5.4654 < 7.1051] w=0.9808 to align # Constraint # added constraint: constraint((T0291)I89.CB, (T0291)T105.CB) [> 3.2539 = 5.4231 < 7.0501] w=0.9808 to align # Constraint # added constraint: constraint((T0291)V56.CB, (T0291)T105.CB) [> 4.0303 = 6.7172 < 8.7324] w=0.9808 to align # Constraint # added constraint: constraint((T0291)V149.CB, (T0291)S211.CB) [> 4.1532 = 6.9219 < 8.9985] w=0.9808 to align # Constraint # added constraint: constraint((T0291)N110.CB, (T0291)I160.CB) [> 2.3027 = 3.8379 < 4.9892] w=0.9808 to align # Constraint # added constraint: constraint((T0291)N110.CB, (T0291)L159.CB) [> 4.3180 = 7.1967 < 9.3557] w=0.9808 to align # Constraint # added constraint: constraint((T0291)W196.CB, (T0291)S215.CB) [> 2.7613 = 4.6022 < 5.9829] w=0.9808 to align # Constraint # added constraint: constraint((T0291)A154.CB, (T0291)W196.CB) [> 2.9772 = 4.9620 < 6.4506] w=0.9808 to align # Constraint # added constraint: constraint((T0291)L153.CB, (T0291)W196.CB) [> 3.9214 = 6.5356 < 8.4963] w=0.9808 to align # Constraint # added constraint: constraint((T0291)I136.CB, (T0291)I158.CB) [> 3.8814 = 6.4689 < 8.4096] w=0.9808 to align # Constraint # added constraint: constraint((T0291)A77.CB, (T0291)I103.CB) [> 3.7301 = 6.2169 < 8.0820] w=0.9808 to align # Constraint # added constraint: constraint((T0291)L117.CB, (T0291)V223.CB) [> 3.9306 = 6.5511 < 8.5164] w=0.9808 to align # Constraint # added constraint: constraint((T0291)D265.CB, (T0291)R274.CB) [> 4.1386 = 6.8977 < 8.9670] w=0.9808 to align # Constraint # added constraint: constraint((T0291)L220.CB, (T0291)C266.CB) [> 4.3237 = 7.2062 < 9.3680] w=0.9808 to align # Constraint # added constraint: constraint((T0291)L220.CB, (T0291)M263.CB) [> 3.3357 = 5.5595 < 7.2273] w=0.9808 to align # Constraint # added constraint: constraint((T0291)W214.CB, (T0291)R274.CB) [> 4.0150 = 6.6917 < 8.6992] w=0.9808 to align # Constraint # added constraint: constraint((T0291)V213.CB, (T0291)R274.CB) [> 3.0384 = 5.0640 < 6.5832] w=0.9808 to align # Constraint # added constraint: constraint((T0291)I89.CB, (T0291)V168.CB) [> 4.0482 = 6.7470 < 8.7711] w=0.9808 to align # Constraint # added constraint: constraint((T0291)I89.CB, (T0291)L159.CB) [> 3.7578 = 6.2630 < 8.1419] w=0.9808 to align # Constraint # added constraint: constraint((T0291)L117.CB, (T0291)A155.CB) [> 3.7557 = 6.2595 < 8.1373] w=0.9808 to align # Constraint # added constraint: constraint((T0291)S144.CB, (T0291)D212.CB) [> 4.3469 = 7.2448 < 9.4182] w=0.9808 to align # Constraint # added constraint: constraint((T0291)E92.CB, (T0291)T105.CB) [> 3.7110 = 6.1849 < 8.0404] w=0.9808 to align # Constraint # added constraint: constraint((T0291)L91.CB, (T0291)T105.CB) [> 3.2229 = 5.3716 < 6.9831] w=0.9808 to align # Constraint # added constraint: constraint((T0291)L220.CB, (T0291)L262.CB) [> 4.1690 = 6.9484 < 9.0329] w=0.9789 to align # Constraint # added constraint: constraint((T0291)D30.CB, (T0291)G44.CA) [> 2.9293 = 4.8822 < 6.3468] w=0.9744 to align # Constraint # added constraint: constraint((T0291)I27.CB, (T0291)L46.CB) [> 3.4684 = 5.7807 < 7.5149] w=0.9744 to align # Constraint # added constraint: constraint((T0291)I27.CB, (T0291)G44.CA) [> 3.6534 = 6.0890 < 7.9157] w=0.9744 to align # Constraint # added constraint: constraint((T0291)I27.CB, (T0291)R45.CB) [> 4.1919 = 6.9865 < 9.0825] w=0.9744 to align # Constraint # added constraint: constraint((T0291)S28.CB, (T0291)G44.CA) [> 3.7036 = 6.1727 < 8.0245] w=0.9744 to align # Constraint # added constraint: constraint((T0291)S28.CB, (T0291)R45.CB) [> 2.9174 = 4.8624 < 6.3211] w=0.9744 to align # Constraint # added constraint: constraint((T0291)V94.CB, (T0291)I103.CB) [> 3.2854 = 5.4757 < 7.1184] w=0.9744 to align # Constraint # added constraint: constraint((T0291)V94.CB, (T0291)V104.CB) [> 4.1285 = 6.8808 < 8.9450] w=0.9744 to align # Constraint # added constraint: constraint((T0291)G217.CA, (T0291)W267.CB) [> 3.6547 = 6.0912 < 7.9185] w=0.9617 to align # Constraint # added constraint: constraint((T0291)D114.CB, (T0291)R156.CB) [> 2.8103 = 4.6839 < 6.0890] w=0.9617 to align # Constraint # added constraint: constraint((T0291)I136.CB, (T0291)V219.CB) [> 4.1267 = 6.8779 < 8.9412] w=0.9616 to align # Constraint # added constraint: constraint((T0291)V41.CB, (T0291)A57.CB) [> 3.6831 = 6.1385 < 7.9801] w=0.9616 to align # Constraint # added constraint: constraint((T0291)S198.CB, (T0291)A210.CB) [> 4.3175 = 7.1958 < 9.3546] w=0.9616 to align # Constraint # added constraint: constraint((T0291)L113.CB, (T0291)C166.CB) [> 4.0744 = 6.7907 < 8.8279] w=0.9616 to align # Constraint # added constraint: constraint((T0291)L113.CB, (T0291)L159.CB) [> 4.2708 = 7.1179 < 9.2533] w=0.9616 to align # Constraint # added constraint: constraint((T0291)K31.CB, (T0291)C42.CB) [> 3.9998 = 6.6663 < 8.6662] w=0.9616 to align # Constraint # added constraint: constraint((T0291)V32.CB, (T0291)C42.CB) [> 3.3389 = 5.5649 < 7.2344] w=0.9616 to align # Constraint # added constraint: constraint((T0291)V33.CB, (T0291)C42.CB) [> 3.8133 = 6.3555 < 8.2621] w=0.9616 to align # Constraint # added constraint: constraint((T0291)V33.CB, (T0291)S43.CB) [> 3.3053 = 5.5089 < 7.1616] w=0.9616 to align # Constraint # added constraint: constraint((T0291)S43.CB, (T0291)Y107.CB) [> 3.9924 = 6.6540 < 8.6502] w=0.9616 to align # Constraint # added constraint: constraint((T0291)E92.CB, (T0291)E106.CB) [> 3.9899 = 6.6499 < 8.6448] w=0.9616 to align # Constraint # added constraint: constraint((T0291)M108.CB, (T0291)L159.CB) [> 2.4486 = 4.0810 < 5.3054] w=0.9597 to align # Constraint # added constraint: constraint((T0291)H85.CB, (T0291)Y142.CB) [> 2.7436 = 4.5726 < 5.9444] w=0.9552 to align # Constraint # added constraint: constraint((T0291)H85.CB, (T0291)G139.CA) [> 3.4517 = 5.7528 < 7.4787] w=0.9552 to align # Constraint # added constraint: constraint((T0291)C42.CB, (T0291)A57.CB) [> 4.3115 = 7.1858 < 9.3415] w=0.9488 to align # Constraint # added constraint: constraint((T0291)F116.CB, (T0291)I160.CB) [> 3.5235 = 5.8724 < 7.6342] w=0.9425 to align # Constraint # added constraint: constraint((T0291)A210.CB, (T0291)R274.CB) [> 3.0383 = 5.0639 < 6.5830] w=0.9424 to align # Constraint # added constraint: constraint((T0291)S144.CB, (T0291)S209.CB) [> 2.8333 = 4.7221 < 6.1387] w=0.9424 to align # Constraint # added constraint: constraint((T0291)P199.CB, (T0291)W214.CB) [> 4.5526 = 7.5877 < 9.8641] w=0.9424 to align # Constraint # added constraint: constraint((T0291)D30.CB, (T0291)C42.CB) [> 3.9042 = 6.5070 < 8.4590] w=0.9424 to align # Constraint # added constraint: constraint((T0291)M224.CB, (T0291)L259.CB) [> 3.7852 = 6.3086 < 8.2012] w=0.9424 to align # Constraint # added constraint: constraint((T0291)L113.CB, (T0291)R156.CB) [> 4.5616 = 7.6027 < 9.8835] w=0.9424 to align # Constraint # added constraint: constraint((T0291)A77.CB, (T0291)V94.CB) [> 3.2981 = 5.4969 < 7.1460] w=0.9424 to align # Constraint # added constraint: constraint((T0291)N110.CB, (T0291)N161.CB) [> 3.8123 = 6.3538 < 8.2600] w=0.9424 to align # Constraint # added constraint: constraint((T0291)I58.CB, (T0291)I103.CB) [> 4.2227 = 7.0379 < 9.1492] w=0.9418 to align # Constraint # added constraint: constraint((T0291)I58.CB, (T0291)M102.CB) [> 3.5497 = 5.9161 < 7.6910] w=0.9418 to align # Constraint # added constraint: constraint((T0291)I89.CB, (T0291)M108.CB) [> 4.0126 = 6.6876 < 8.6939] w=0.9405 to align # Constraint # added constraint: constraint((T0291)M108.CB, (T0291)I160.CB) [> 3.8591 = 6.4319 < 8.3615] w=0.9405 to align # Constraint # added constraint: constraint((T0291)V213.CB, (T0291)P275.CB) [> 3.7317 = 6.2194 < 8.0852] w=0.9361 to align # Constraint # added constraint: constraint((T0291)V149.CB, (T0291)S209.CB) [> 3.3903 = 5.6505 < 7.3456] w=0.9360 to align # Constraint # added constraint: constraint((T0291)D30.CB, (T0291)S43.CB) [> 2.8186 = 4.6976 < 6.1069] w=0.9360 to align # Constraint # added constraint: constraint((T0291)K31.CB, (T0291)S43.CB) [> 2.9683 = 4.9472 < 6.4313] w=0.9296 to align # Constraint # added constraint: constraint((T0291)I88.CB, (T0291)Y142.CB) [> 4.1399 = 6.8998 < 8.9698] w=0.9233 to align # Constraint # added constraint: constraint((T0291)R195.CB, (T0291)I218.CB) [> 4.0994 = 6.8323 < 8.8820] w=0.9233 to align # Constraint # added constraint: constraint((T0291)M224.CB, (T0291)C255.CB) [> 3.1792 = 5.2986 < 6.8882] w=0.9232 to align # Constraint # added constraint: constraint((T0291)N26.CB, (T0291)L46.CB) [> 3.6618 = 6.1030 < 7.9339] w=0.9232 to align # Constraint # added constraint: constraint((T0291)S43.CB, (T0291)S55.CB) [> 4.1759 = 6.9599 < 9.0479] w=0.9168 to align # Constraint # added constraint: constraint((T0291)I158.CB, (T0291)S169.CB) [> 4.0997 = 6.8328 < 8.8827] w=0.9040 to align # Constraint # added constraint: constraint((T0291)G44.CA, (T0291)Y107.CB) [> 4.5860 = 7.6433 < 9.9363] w=0.9040 to align # Constraint # added constraint: constraint((T0291)N157.CB, (T0291)D170.CB) [> 2.6664 = 4.4440 < 5.7772] w=0.9040 to align # Constraint # added constraint: constraint((T0291)L117.CB, (T0291)E222.CB) [> 4.0817 = 6.8029 < 8.8437] w=0.9040 to align # Constraint # added constraint: constraint((T0291)L133.CB, (T0291)V223.CB) [> 3.9834 = 6.6389 < 8.6306] w=0.9021 to align # Constraint # added constraint: constraint((T0291)A137.CB, (T0291)F277.CB) [> 3.2837 = 5.4729 < 7.1147] w=0.8913 to align # Constraint # added constraint: constraint((T0291)R195.CB, (T0291)Y231.CB) [> 3.5650 = 5.9416 < 7.7241] w=0.8913 to align # Constraint # added constraint: constraint((T0291)P199.CB, (T0291)V243.CB) [> 3.3107 = 5.5178 < 7.1732] w=0.8906 to align # Constraint # added constraint: constraint((T0291)V56.CB, (T0291)V104.CB) [> 3.2678 = 5.4464 < 7.0803] w=0.8906 to align # Constraint # added constraint: constraint((T0291)K141.CB, (T0291)F277.CB) [> 2.4866 = 4.1444 < 5.3877] w=0.8849 to align # Constraint # added constraint: constraint((T0291)A137.CB, (T0291)I280.CB) [> 2.9697 = 4.9496 < 6.4345] w=0.8849 to align # Constraint # added constraint: constraint((T0291)D152.CB, (T0291)D170.CB) [> 3.7760 = 6.2933 < 8.1813] w=0.8849 to align # Constraint # added constraint: constraint((T0291)F83.CB, (T0291)L143.CB) [> 4.2595 = 7.0991 < 9.2289] w=0.8848 to align # Constraint # added constraint: constraint((T0291)F83.CB, (T0291)M146.CB) [> 3.9865 = 6.6442 < 8.6375] w=0.8848 to align # Constraint # added constraint: constraint((T0291)T208.CB, (T0291)R271.CB) [> 3.8617 = 6.4362 < 8.3670] w=0.8830 to align # Constraint # added constraint: constraint((T0291)I79.CB, (T0291)Y148.CB) [> 3.9614 = 6.6023 < 8.5830] w=0.8829 to align # Constraint # added constraint: constraint((T0291)A137.CB, (T0291)V281.CB) [> 3.0215 = 5.0358 < 6.5465] w=0.8785 to align # Constraint # added constraint: constraint((T0291)V95.CB, (T0291)V104.CB) [> 4.4106 = 7.3510 < 9.5563] w=0.8785 to align # Constraint # added constraint: constraint((T0291)G111.CA, (T0291)I160.CB) [> 3.3108 = 5.5180 < 7.1733] w=0.8765 to align # Constraint # added constraint: constraint((T0291)I218.CB, (T0291)P230.CB) [> 3.4850 = 5.8083 < 7.5508] w=0.8720 to align # Constraint # added constraint: constraint((T0291)T60.CB, (T0291)V101.CB) [> 4.1678 = 6.9463 < 9.0302] w=0.8714 to align # Constraint # added constraint: constraint((T0291)I158.CB, (T0291)V219.CB) [> 4.4019 = 7.3364 < 9.5374] w=0.8657 to align # Constraint # added constraint: constraint((T0291)M140.CB, (T0291)F277.CB) [> 2.9256 = 4.8759 < 6.3387] w=0.8657 to align # Constraint # added constraint: constraint((T0291)V213.CB, (T0291)I280.CB) [> 4.3125 = 7.1875 < 9.3438] w=0.8657 to align # Constraint # added constraint: constraint((T0291)A154.CB, (T0291)P193.CB) [> 3.5991 = 5.9985 < 7.7980] w=0.8656 to align # Constraint # added constraint: constraint((T0291)A77.CB, (T0291)L91.CB) [> 4.1507 = 6.9178 < 8.9931] w=0.8656 to align # Constraint # added constraint: constraint((T0291)I29.CB, (T0291)C42.CB) [> 3.0495 = 5.0825 < 6.6072] w=0.8656 to align # Constraint # added constraint: constraint((T0291)V149.CB, (T0291)T208.CB) [> 4.0185 = 6.6975 < 8.7067] w=0.8637 to align # Constraint # added constraint: constraint((T0291)L220.CB, (T0291)L259.CB) [> 4.1844 = 6.9741 < 9.0663] w=0.8637 to align # Constraint # added constraint: constraint((T0291)M108.CB, (T0291)N161.CB) [> 3.0693 = 5.1154 < 6.6501] w=0.8637 to align # Constraint # added constraint: constraint((T0291)S144.CB, (T0291)F277.CB) [> 3.3967 = 5.6612 < 7.3596] w=0.8593 to align # Constraint # added constraint: constraint((T0291)F73.CB, (T0291)V101.CB) [> 3.6843 = 6.1406 < 7.9827] w=0.8573 to align # Constraint # added constraint: constraint((T0291)I88.CB, (T0291)L143.CB) [> 4.3282 = 7.2136 < 9.3777] w=0.8465 to align # Constraint # added constraint: constraint((T0291)L262.CB, (T0291)I280.CB) [> 4.1580 = 6.9300 < 9.0091] w=0.8465 to align # Constraint # added constraint: constraint((T0291)H150.CB, (T0291)S215.CB) [> 4.5798 = 7.6330 < 9.9229] w=0.8464 to align # Constraint # added constraint: constraint((T0291)E76.CB, (T0291)G172.CA) [> 2.9369 = 4.8949 < 6.3634] w=0.8464 to align # Constraint # added constraint: constraint((T0291)D30.CB, (T0291)R45.CB) [> 3.9957 = 6.6596 < 8.6574] w=0.8400 to align # Constraint # added constraint: constraint((T0291)L153.CB, (T0291)V168.CB) [> 4.5036 = 7.5059 < 9.7577] w=0.8274 to align # Constraint # added constraint: constraint((T0291)D152.CB, (T0291)W196.CB) [> 4.4785 = 7.4641 < 9.7034] w=0.8273 to align # Constraint # added constraint: constraint((T0291)W196.CB, (T0291)V219.CB) [> 4.3715 = 7.2859 < 9.4716] w=0.8272 to align # Constraint # added constraint: constraint((T0291)H150.CB, (T0291)F171.CB) [> 3.9629 = 6.6048 < 8.5863] w=0.8272 to align # Constraint # added constraint: constraint((T0291)S138.CB, (T0291)V281.CB) [> 3.6046 = 6.0077 < 7.8100] w=0.8146 to align # Constraint # added constraint: constraint((T0291)T197.CB, (T0291)S215.CB) [> 4.4139 = 7.3564 < 9.5634] w=0.8082 to align # Constraint # added constraint: constraint((T0291)T197.CB, (T0291)S211.CB) [> 4.5222 = 7.5370 < 9.7981] w=0.8082 to align # Constraint # added constraint: constraint((T0291)V213.CB, (T0291)F277.CB) [> 3.9500 = 6.5833 < 8.5583] w=0.8082 to align # Constraint # added constraint: constraint((T0291)V213.CB, (T0291)K276.CB) [> 4.3013 = 7.1688 < 9.3195] w=0.8082 to align # Constraint # added constraint: constraint((T0291)V32.CB, (T0291)S43.CB) [> 4.6316 = 7.7193 < 10.0351] w=0.8080 to align # Constraint # added constraint: constraint((T0291)V126.CB, (T0291)P256.CB) [> 3.7276 = 6.2127 < 8.0765] w=0.8061 to align # Constraint # added constraint: constraint((T0291)N87.CB, (T0291)V165.CB) [> 4.2722 = 7.1203 < 9.2564] w=0.8017 to align # Constraint # added constraint: constraint((T0291)L117.CB, (T0291)G227.CA) [> 3.3281 = 5.5469 < 7.2110] w=0.7940 to align # Constraint # added constraint: constraint((T0291)I27.CB, (T0291)V104.CB) [> 4.2373 = 7.0621 < 9.1808] w=0.7933 to align # Constraint # added constraint: constraint((T0291)I202.CB, (T0291)I240.CB) [> 3.3155 = 5.5258 < 7.1836] w=0.7882 to align # Constraint # added constraint: constraint((T0291)R134.CB, (T0291)V281.CB) [> 4.0062 = 6.6771 < 8.6802] w=0.7826 to align # Constraint # added constraint: constraint((T0291)T60.CB, (T0291)P100.CB) [> 3.4446 = 5.7410 < 7.4633] w=0.7818 to align # Constraint # added constraint: constraint((T0291)E109.CB, (T0291)N161.CB) [> 3.9258 = 6.5430 < 8.5059] w=0.7805 to align # Constraint # added constraint: constraint((T0291)F83.CB, (T0291)Y142.CB) [> 4.4516 = 7.4194 < 9.6452] w=0.7762 to align # Constraint # added constraint: constraint((T0291)G147.CA, (T0291)S209.CB) [> 4.2706 = 7.1177 < 9.2530] w=0.7760 to align # Constraint # added constraint: constraint((T0291)V41.CB, (T0291)I58.CB) [> 4.1584 = 6.9307 < 9.0100] w=0.7754 to align # Constraint # added constraint: constraint((T0291)V41.CB, (T0291)K59.CB) [> 3.0621 = 5.1034 < 6.6345] w=0.7754 to align # Constraint # added constraint: constraint((T0291)G44.CA, (T0291)V56.CB) [> 3.2969 = 5.4948 < 7.1433] w=0.7754 to align # Constraint # added constraint: constraint((T0291)G44.CA, (T0291)A57.CB) [> 4.4188 = 7.3646 < 9.5740] w=0.7754 to align # Constraint # added constraint: constraint((T0291)A57.CB, (T0291)V104.CB) [> 4.4373 = 7.3955 < 9.6142] w=0.7754 to align # Constraint # added constraint: constraint((T0291)I58.CB, (T0291)V104.CB) [> 3.2312 = 5.3853 < 7.0009] w=0.7754 to align # Constraint # added constraint: constraint((T0291)K59.CB, (T0291)M102.CB) [> 4.1711 = 6.9517 < 9.0373] w=0.7754 to align # Constraint # added constraint: constraint((T0291)V33.CB, (T0291)A57.CB) [> 3.9436 = 6.5727 < 8.5445] w=0.7690 to align # Constraint # added constraint: constraint((T0291)G44.CA, (T0291)I58.CB) [> 3.5453 = 5.9089 < 7.6815] w=0.7690 to align # Constraint # added constraint: constraint((T0291)V56.CB, (T0291)E92.CB) [> 3.7244 = 6.2074 < 8.0696] w=0.7690 to align # Constraint # added constraint: constraint((T0291)K59.CB, (T0291)I103.CB) [> 2.6147 = 4.3578 < 5.6651] w=0.7690 to align # Constraint # added constraint: constraint((T0291)K141.CB, (T0291)E278.CB) [> 3.2466 = 5.4110 < 7.0343] w=0.7634 to align # Constraint # added constraint: constraint((T0291)I29.CB, (T0291)S43.CB) [> 4.5208 = 7.5346 < 9.7950] w=0.7632 to align # Constraint # added constraint: constraint((T0291)I194.CB, (T0291)V239.CB) [> 3.3720 = 5.6200 < 7.3060] w=0.7627 to align # Constraint # added constraint: constraint((T0291)L46.CB, (T0291)V56.CB) [> 3.2932 = 5.4886 < 7.1352] w=0.7626 to align # Constraint # added constraint: constraint((T0291)R45.CB, (T0291)S55.CB) [> 3.4896 = 5.8160 < 7.5608] w=0.7626 to align # Constraint # added constraint: constraint((T0291)S55.CB, (T0291)Y107.CB) [> 2.8104 = 4.6839 < 6.0891] w=0.7626 to align # Constraint # added constraint: constraint((T0291)V56.CB, (T0291)E106.CB) [> 4.1171 = 6.8619 < 8.9205] w=0.7626 to align # Constraint # added constraint: constraint((T0291)A57.CB, (T0291)T105.CB) [> 3.0712 = 5.1186 < 6.6542] w=0.7626 to align # Constraint # added constraint: constraint((T0291)R45.CB, (T0291)I54.CB) [> 4.1961 = 6.9936 < 9.0916] w=0.7626 to align # Constraint # added constraint: constraint((T0291)T60.CB, (T0291)M102.CB) [> 3.3762 = 5.6269 < 7.3150] w=0.7626 to align # Constraint # added constraint: constraint((T0291)R195.CB, (T0291)R229.CB) [> 3.6529 = 6.0882 < 7.9147] w=0.7569 to align # Constraint # added constraint: constraint((T0291)K59.CB, (T0291)T105.CB) [> 4.1127 = 6.8544 < 8.9108] w=0.7563 to align # Constraint # added constraint: constraint((T0291)A57.CB, (T0291)E106.CB) [> 4.1471 = 6.9118 < 8.9854] w=0.7563 to align # Constraint # added constraint: constraint((T0291)S225.CB, (T0291)P252.CB) [> 3.1964 = 5.3274 < 6.9256] w=0.7549 to align # Constraint # added constraint: constraint((T0291)D212.CB, (T0291)F277.CB) [> 4.5297 = 7.5494 < 9.8142] w=0.7506 to align # Constraint # added constraint: constraint((T0291)L113.CB, (T0291)V223.CB) [> 4.4929 = 7.4881 < 9.7346] w=0.7505 to align # Constraint # added constraint: constraint((T0291)S43.CB, (T0291)A57.CB) [> 3.8925 = 6.4875 < 8.4338] w=0.7499 to align # Constraint # added constraint: constraint((T0291)W221.CB, (T0291)P230.CB) [> 3.3341 = 5.5568 < 7.2238] w=0.7499 to align # Constraint # added constraint: constraint((T0291)E109.CB, (T0291)S162.CB) [> 3.2631 = 5.4386 < 7.0701] w=0.7485 to align # Constraint # added constraint: constraint((T0291)C42.CB, (T0291)I58.CB) [> 3.0107 = 5.0179 < 6.5233] w=0.7435 to align # Constraint # added constraint: constraint((T0291)W221.CB, (T0291)L249.CB) [> 3.6795 = 6.1325 < 7.9722] w=0.7422 to align # Constraint # added constraint: constraint((T0291)L61.CB, (T0291)V101.CB) [> 2.8068 = 4.6781 < 6.0815] w=0.7422 to align # Constraint # added constraint: constraint((T0291)L143.CB, (T0291)V168.CB) [> 4.3949 = 7.3249 < 9.5224] w=0.7314 to align # Constraint # added constraint: constraint((T0291)R151.CB, (T0291)G174.CA) [> 3.2002 = 5.3336 < 6.9337] w=0.7313 to align # Constraint # added constraint: constraint((T0291)L262.CB, (T0291)I283.CB) [> 3.4613 = 5.7689 < 7.4996] w=0.7307 to align # Constraint # added constraint: constraint((T0291)R45.CB, (T0291)V56.CB) [> 4.2862 = 7.1437 < 9.2869] w=0.7307 to align # Constraint # added constraint: constraint((T0291)C42.CB, (T0291)T60.CB) [> 4.1692 = 6.9486 < 9.0332] w=0.7307 to align # Constraint # added constraint: constraint((T0291)A155.CB, (T0291)V223.CB) [> 4.2183 = 7.0305 < 9.1397] w=0.7293 to align # Constraint # added constraint: constraint((T0291)L143.CB, (T0291)D212.CB) [> 4.6164 = 7.6940 < 10.0023] w=0.7293 to align # Constraint # added constraint: constraint((T0291)P251.CB, (T0291)Y260.CB) [> 2.9325 = 4.8875 < 6.3538] w=0.7229 to align # Constraint # added constraint: constraint((T0291)E40.CB, (T0291)T60.CB) [> 3.1685 = 5.2808 < 6.8651] w=0.7179 to align # Constraint # added constraint: constraint((T0291)P86.CB, (T0291)V165.CB) [> 4.3403 = 7.2339 < 9.4041] w=0.7121 to align # Constraint # added constraint: constraint((T0291)D152.CB, (T0291)G174.CA) [> 4.2434 = 7.0724 < 9.1941] w=0.7121 to align # Constraint # added constraint: constraint((T0291)H150.CB, (T0291)G174.CA) [> 3.5125 = 5.8541 < 7.6103] w=0.7121 to align # Constraint # added constraint: constraint((T0291)R195.CB, (T0291)V239.CB) [> 3.7441 = 6.2402 < 8.1123] w=0.7115 to align # Constraint # added constraint: constraint((T0291)G39.CA, (T0291)T60.CB) [> 3.5413 = 5.9021 < 7.6727] w=0.7115 to align # Constraint # added constraint: constraint((T0291)A154.CB, (T0291)I218.CB) [> 4.4017 = 7.3362 < 9.5370] w=0.7102 to align # Constraint # added constraint: constraint((T0291)I136.CB, (T0291)L153.CB) [> 4.5242 = 7.5403 < 9.8025] w=0.7102 to align # Constraint # added constraint: constraint((T0291)R195.CB, (T0291)P230.CB) [> 3.3114 = 5.5189 < 7.1746] w=0.7058 to align # Constraint # added constraint: constraint((T0291)Y216.CB, (T0291)I280.CB) [> 4.2582 = 7.0970 < 9.2261] w=0.7038 to align # Constraint # added constraint: constraint((T0291)D152.CB, (T0291)P193.CB) [> 3.7120 = 6.1867 < 8.0427] w=0.7038 to align # Constraint # added constraint: constraint((T0291)S43.CB, (T0291)V56.CB) [> 4.6222 = 7.7036 < 10.0147] w=0.6987 to align # Constraint # added constraint: constraint((T0291)I202.CB, (T0291)V243.CB) [> 3.7931 = 6.3218 < 8.2184] w=0.6986 to align # Constraint # added constraint: constraint((T0291)M80.CB, (T0291)T105.CB) [> 4.4478 = 7.4130 < 9.6369] w=0.6974 to align # Constraint # added constraint: constraint((T0291)T197.CB, (T0291)W214.CB) [> 4.5735 = 7.6226 < 9.9093] w=0.6930 to align # Constraint # added constraint: constraint((T0291)F83.CB, (T0291)Y148.CB) [> 4.2648 = 7.1080 < 9.2403] w=0.6930 to align # Constraint # added constraint: constraint((T0291)D152.CB, (T0291)S215.CB) [> 4.5984 = 7.6639 < 9.9631] w=0.6930 to align # Constraint # added constraint: constraint((T0291)D152.CB, (T0291)L173.CB) [> 2.8772 = 4.7954 < 6.2340] w=0.6929 to align # Constraint # added constraint: constraint((T0291)Y148.CB, (T0291)R175.CB) [> 4.1786 = 6.9643 < 9.0536] w=0.6929 to align # Constraint # added constraint: constraint((T0291)A57.CB, (T0291)M108.CB) [> 4.4207 = 7.3679 < 9.5783] w=0.6910 to align # Constraint # added constraint: constraint((T0291)I27.CB, (T0291)V56.CB) [> 4.4387 = 7.3979 < 9.6172] w=0.6859 to align # Constraint # added constraint: constraint((T0291)F38.CB, (T0291)L61.CB) [> 3.4316 = 5.7194 < 7.4352] w=0.6846 to align # Constraint # added constraint: constraint((T0291)G39.CA, (T0291)L61.CB) [> 3.3048 = 5.5080 < 7.1604] w=0.6782 to align # Constraint # added constraint: constraint((T0291)V41.CB, (T0291)T60.CB) [> 4.5157 = 7.5262 < 9.7841] w=0.6731 to align # Constraint # added constraint: constraint((T0291)G217.CA, (T0291)L262.CB) [> 4.5001 = 7.5002 < 9.7503] w=0.6719 to align # Constraint # added constraint: constraint((T0291)L46.CB, (T0291)V104.CB) [> 4.1218 = 6.8697 < 8.9306] w=0.6718 to align # Constraint # added constraint: constraint((T0291)E40.CB, (T0291)K59.CB) [> 4.4334 = 7.3889 < 9.6056] w=0.6603 to align # Constraint # added constraint: constraint((T0291)G39.CA, (T0291)K62.CB) [> 3.5705 = 5.9508 < 7.7361] w=0.6590 to align # Constraint # added constraint: constraint((T0291)I79.CB, (T0291)G174.CA) [> 3.7275 = 6.2125 < 8.0763] w=0.6590 to align # Constraint # added constraint: constraint((T0291)I79.CB, (T0291)F171.CB) [> 3.0661 = 5.1101 < 6.6432] w=0.6590 to align # Constraint # added constraint: constraint((T0291)M132.CB, (T0291)I158.CB) [> 4.5152 = 7.5254 < 9.7830] w=0.6545 to align # Constraint # added constraint: constraint((T0291)I194.CB, (T0291)N236.CB) [> 2.9152 = 4.8586 < 6.3162] w=0.6539 to align # Constraint # added constraint: constraint((T0291)L22.CB, (T0291)V95.CB) [> 3.1732 = 5.2886 < 6.8752] w=0.6526 to align # Constraint # added constraint: constraint((T0291)D152.CB, (T0291)G172.CA) [> 4.1067 = 6.8446 < 8.8979] w=0.6526 to align # Constraint # added constraint: constraint((T0291)R151.CB, (T0291)L173.CB) [> 2.7493 = 4.5821 < 5.9568] w=0.6526 to align # Constraint # added constraint: constraint((T0291)V149.CB, (T0291)G174.CA) [> 3.6201 = 6.0335 < 7.8435] w=0.6526 to align # Constraint # added constraint: constraint((T0291)Y148.CB, (T0291)G174.CA) [> 3.8216 = 6.3694 < 8.2802] w=0.6526 to align # Constraint # added constraint: constraint((T0291)S198.CB, (T0291)F207.CB) [> 4.2579 = 7.0965 < 9.2255] w=0.6525 to align # Constraint # added constraint: constraint((T0291)G93.CA, (T0291)T105.CB) [> 4.6683 = 7.7805 < 10.1146] w=0.6481 to align # Constraint # added constraint: constraint((T0291)Y231.CB, (T0291)A242.CB) [> 3.5488 = 5.9147 < 7.6891] w=0.6411 to align # Constraint # added constraint: constraint((T0291)E76.CB, (T0291)I103.CB) [> 4.2389 = 7.0648 < 9.1842] w=0.6398 to align # Constraint # added constraint: constraint((T0291)P199.CB, (T0291)D244.CB) [> 3.4381 = 5.7301 < 7.4491] w=0.6398 to align # Constraint # added constraint: constraint((T0291)G139.CA, (T0291)F277.CB) [> 4.5704 = 7.6174 < 9.9026] w=0.6354 to align # Constraint # added constraint: constraint((T0291)L159.CB, (T0291)V168.CB) [> 4.6480 = 7.7467 < 10.0708] w=0.6353 to align # Constraint # added constraint: constraint((T0291)L129.CB, (T0291)L220.CB) [> 4.0747 = 6.7912 < 8.8286] w=0.6353 to align # Constraint # added constraint: constraint((T0291)M140.CB, (T0291)V213.CB) [> 4.5222 = 7.5370 < 9.7980] w=0.6353 to align # Constraint # added constraint: constraint((T0291)I29.CB, (T0291)I58.CB) [> 3.9996 = 6.6659 < 8.6657] w=0.6347 to align # Constraint # added constraint: constraint((T0291)L249.CB, (T0291)M263.CB) [> 4.4163 = 7.3606 < 9.5687] w=0.6334 to align # Constraint # added constraint: constraint((T0291)I58.CB, (T0291)T105.CB) [> 4.6013 = 7.6689 < 9.9696] w=0.6334 to align # Constraint # added constraint: constraint((T0291)L262.CB, (T0291)P275.CB) [> 4.4544 = 7.4240 < 9.6513] w=0.6289 to align # Constraint # added constraint: constraint((T0291)S43.CB, (T0291)I58.CB) [> 4.6133 = 7.6889 < 9.9956] w=0.6283 to align # Constraint # added constraint: constraint((T0291)L61.CB, (T0291)F73.CB) [> 3.4882 = 5.8137 < 7.5578] w=0.6270 to align # Constraint # added constraint: constraint((T0291)M80.CB, (T0291)I103.CB) [> 4.4167 = 7.3612 < 9.5696] w=0.6206 to align # Constraint # added constraint: constraint((T0291)I218.CB, (T0291)W267.CB) [> 4.4961 = 7.4935 < 9.7415] w=0.6161 to align # Constraint # added constraint: constraint((T0291)E106.CB, (T0291)K167.CB) [> 4.4125 = 7.3541 < 9.5603] w=0.6161 to align # Constraint # added constraint: constraint((T0291)L22.CB, (T0291)V104.CB) [> 3.8235 = 6.3725 < 8.2842] w=0.6142 to align # Constraint # added constraint: constraint((T0291)Y148.CB, (T0291)V176.CB) [> 3.4304 = 5.7174 < 7.4326] w=0.6142 to align # Constraint # added constraint: constraint((T0291)L117.CB, (T0291)Y226.CB) [> 3.1659 = 5.2765 < 6.8594] w=0.6091 to align # Constraint # added constraint: constraint((T0291)Q82.CB, (T0291)M146.CB) [> 4.1513 = 6.9188 < 8.9944] w=0.6079 to align # Constraint # added constraint: constraint((T0291)L22.CB, (T0291)G93.CA) [> 3.3053 = 5.5088 < 7.1615] w=0.6078 to align # Constraint # added constraint: constraint((T0291)Y216.CB, (T0291)F277.CB) [> 4.4239 = 7.3732 < 9.5852] w=0.5951 to align # Constraint # added constraint: constraint((T0291)V149.CB, (T0291)F207.CB) [> 3.5240 = 5.8733 < 7.6352] w=0.5951 to align # Constraint # added constraint: constraint((T0291)H150.CB, (T0291)L173.CB) [> 4.3325 = 7.2209 < 9.3871] w=0.5950 to align # Constraint # added constraint: constraint((T0291)L61.CB, (T0291)P100.CB) [> 3.8763 = 6.4604 < 8.3985] w=0.5886 to align # Constraint # added constraint: constraint((T0291)V130.CB, (T0291)L259.CB) [> 4.4542 = 7.4236 < 9.6507] w=0.5778 to align # Constraint # added constraint: constraint((T0291)W196.CB, (T0291)W214.CB) [> 4.6149 = 7.6915 < 9.9989] w=0.5778 to align # Constraint # added constraint: constraint((T0291)P86.CB, (T0291)K167.CB) [> 4.6648 = 7.7746 < 10.1070] w=0.5778 to align # Constraint # added constraint: constraint((T0291)L133.CB, (T0291)Y216.CB) [> 4.3963 = 7.3272 < 9.5254] w=0.5777 to align # Constraint # added constraint: constraint((T0291)L46.CB, (T0291)S55.CB) [> 4.6413 = 7.7356 < 10.0562] w=0.5707 to align # Constraint # added constraint: constraint((T0291)R134.CB, (T0291)L284.CB) [> 2.7762 = 4.6270 < 6.0152] w=0.5695 to align # Constraint # added constraint: constraint((T0291)V126.CB, (T0291)M224.CB) [> 4.2193 = 7.0321 < 9.1418] w=0.5585 to align # Constraint # added constraint: constraint((T0291)M108.CB, (T0291)S169.CB) [> 4.5199 = 7.5331 < 9.7931] w=0.5566 to align # Constraint # added constraint: constraint((T0291)L133.CB, (T0291)V219.CB) [> 4.4994 = 7.4990 < 9.7487] w=0.5566 to align # Constraint # added constraint: constraint((T0291)V126.CB, (T0291)L259.CB) [> 3.8767 = 6.4611 < 8.3994] w=0.5566 to align # Constraint # added constraint: constraint((T0291)N26.CB, (T0291)K47.CB) [> 3.0864 = 5.1440 < 6.6872] w=0.5509 to align # Constraint # added constraint: constraint((T0291)L133.CB, (T0291)L284.CB) [> 3.5152 = 5.8587 < 7.6164] w=0.5439 to align # Constraint # added constraint: constraint((T0291)V130.CB, (T0291)L284.CB) [> 3.6247 = 6.0411 < 7.8535] w=0.5439 to align # Constraint # added constraint: constraint((T0291)A24.CB, (T0291)M102.CB) [> 4.1085 = 6.8476 < 8.9018] w=0.5438 to align # Constraint # added constraint: constraint((T0291)M224.CB, (T0291)P252.CB) [> 3.1378 = 5.2297 < 6.7986] w=0.5438 to align # Constraint # added constraint: constraint((T0291)A154.CB, (T0291)R195.CB) [> 4.4717 = 7.4528 < 9.6887] w=0.5393 to align # Constraint # added constraint: constraint((T0291)V130.CB, (T0291)L287.CB) [> 3.4555 = 5.7592 < 7.4870] w=0.5375 to align # Constraint # added constraint: constraint((T0291)R151.CB, (T0291)F207.CB) [> 3.2570 = 5.4284 < 7.0569] w=0.5375 to align # Constraint # added constraint: constraint((T0291)A137.CB, (T0291)L284.CB) [> 3.7300 = 6.2167 < 8.0817] w=0.5311 to align # Constraint # added constraint: constraint((T0291)I218.CB, (T0291)R229.CB) [> 3.7186 = 6.1976 < 8.0569] w=0.5265 to align # Constraint # added constraint: constraint((T0291)G147.CA, (T0291)L177.CB) [> 3.2867 = 5.4779 < 7.1212] w=0.5246 to align # Constraint # added constraint: constraint((T0291)F38.CB, (T0291)K62.CB) [> 3.7667 = 6.2779 < 8.1612] w=0.5182 to align # Constraint # added constraint: constraint((T0291)S225.CB, (T0291)C255.CB) [> 4.3878 = 7.3130 < 9.5068] w=0.5182 to align # Constraint # added constraint: constraint((T0291)I79.CB, (T0291)V176.CB) [> 4.1613 = 6.9354 < 9.0160] w=0.5182 to align # Constraint # added constraint: constraint((T0291)I194.CB, (T0291)I240.CB) [> 3.9141 = 6.5235 < 8.4805] w=0.5055 to align # Constraint # added constraint: constraint((T0291)A154.CB, (T0291)E222.CB) [> 4.3881 = 7.3135 < 9.5075] w=0.4991 to align # Constraint # added constraint: constraint((T0291)L46.CB, (T0291)E92.CB) [> 4.1854 = 6.9757 < 9.0684] w=0.4991 to align # Constraint # added constraint: constraint((T0291)I27.CB, (T0291)M102.CB) [> 4.3259 = 7.2098 < 9.3727] w=0.4991 to align # Constraint # added constraint: constraint((T0291)V149.CB, (T0291)L177.CB) [> 3.6574 = 6.0956 < 7.9243] w=0.4990 to align # Constraint # added constraint: constraint((T0291)L61.CB, (T0291)M102.CB) [> 4.5361 = 7.5601 < 9.8282] w=0.4990 to align # Constraint # added constraint: constraint((T0291)V130.CB, (T0291)I288.CB) [> 3.3114 = 5.5189 < 7.1746] w=0.4927 to align # Constraint # added constraint: constraint((T0291)F73.CB, (T0291)I103.CB) [> 4.2526 = 7.0877 < 9.2140] w=0.4863 to align # Constraint # added constraint: constraint((T0291)P251.CB, (T0291)M263.CB) [> 4.3138 = 7.1897 < 9.3466] w=0.4862 to align # Constraint # added constraint: constraint((T0291)Q128.CB, (T0291)L164.CB) [> 4.1230 = 6.8717 < 8.9332] w=0.4818 to align # Constraint # added constraint: constraint((T0291)E200.CB, (T0291)A210.CB) [> 4.5530 = 7.5883 < 9.8649] w=0.4817 to align # Constraint # added constraint: constraint((T0291)F38.CB, (T0291)F73.CB) [> 4.1143 = 6.8571 < 8.9142] w=0.4798 to align # Constraint # added constraint: constraint((T0291)H85.CB, (T0291)L143.CB) [> 4.6575 = 7.7625 < 10.0913] w=0.4753 to align # Constraint # added constraint: constraint((T0291)I54.CB, (T0291)Y107.CB) [> 3.6586 = 6.0977 < 7.9271] w=0.4741 to align # Constraint # added constraint: constraint((T0291)G131.CA, (T0291)L284.CB) [> 4.3901 = 7.3169 < 9.5119] w=0.4671 to align # Constraint # added constraint: constraint((T0291)A258.CB, (T0291)L287.CB) [> 3.5338 = 5.8898 < 7.6567] w=0.4671 to align # Constraint # added constraint: constraint((T0291)T105.CB, (T0291)S169.CB) [> 4.4287 = 7.3811 < 9.5955] w=0.4626 to align # Constraint # added constraint: constraint((T0291)Y148.CB, (T0291)L177.CB) [> 4.3143 = 7.1906 < 9.3477] w=0.4607 to align # Constraint # added constraint: constraint((T0291)A203.CB, (T0291)D244.CB) [> 3.7966 = 6.3277 < 8.2260] w=0.4606 to align # Constraint # added constraint: constraint((T0291)D152.CB, (T0291)I192.CB) [> 3.3176 = 5.5294 < 7.1882] w=0.4562 to align # Constraint # added constraint: constraint((T0291)M80.CB, (T0291)R90.CB) [> 4.5450 = 7.5749 < 9.8474] w=0.4543 to align # Constraint # added constraint: constraint((T0291)I192.CB, (T0291)A201.CB) [> 4.0143 = 6.6905 < 8.6976] w=0.4543 to align # Constraint # added constraint: constraint((T0291)M80.CB, (T0291)I89.CB) [> 4.4638 = 7.4397 < 9.6716] w=0.4543 to align # Constraint # added constraint: constraint((T0291)F83.CB, (T0291)F171.CB) [> 4.5705 = 7.6175 < 9.9028] w=0.4497 to align # Constraint # added constraint: constraint((T0291)S28.CB, (T0291)K47.CB) [> 3.9653 = 6.6089 < 8.5915] w=0.4421 to align # Constraint # added constraint: constraint((T0291)R156.CB, (T0291)D170.CB) [> 4.6779 = 7.7965 < 10.1355] w=0.4415 to align # Constraint # added constraint: constraint((T0291)L129.CB, (T0291)L259.CB) [> 4.2863 = 7.1439 < 9.2871] w=0.4415 to align # Constraint # added constraint: constraint((T0291)R118.CB, (T0291)Y226.CB) [> 3.8960 = 6.4934 < 8.4414] w=0.4415 to align # Constraint # added constraint: constraint((T0291)A24.CB, (T0291)K97.CB) [> 3.6269 = 6.0449 < 7.8583] w=0.4415 to align # Constraint # added constraint: constraint((T0291)W221.CB, (T0291)P252.CB) [> 3.7413 = 6.2355 < 8.1062] w=0.4351 to align # Constraint # added constraint: constraint((T0291)R151.CB, (T0291)I192.CB) [> 3.5808 = 5.9681 < 7.7585] w=0.4351 to align # Constraint # added constraint: constraint((T0291)G131.CA, (T0291)C166.CB) [> 4.6261 = 7.7101 < 10.0232] w=0.4242 to align # Constraint # added constraint: constraint((T0291)K59.CB, (T0291)V104.CB) [> 4.6888 = 7.8146 < 10.1590] w=0.4235 to align # Constraint # added constraint: constraint((T0291)W196.CB, (T0291)P230.CB) [> 4.1912 = 6.9854 < 9.0810] w=0.4223 to align # Constraint # added constraint: constraint((T0291)R248.CB, (T0291)L264.CB) [> 4.0732 = 6.7887 < 8.8254] w=0.4223 to align # Constraint # added constraint: constraint((T0291)G131.CA, (T0291)I288.CB) [> 3.5177 = 5.8629 < 7.6217] w=0.4223 to align # Constraint # added constraint: constraint((T0291)R70.CB, (T0291)V101.CB) [> 3.7520 = 6.2533 < 8.1292] w=0.4166 to align # Constraint # added constraint: constraint((T0291)L61.CB, (T0291)I103.CB) [> 4.3569 = 7.2615 < 9.4400] w=0.4095 to align # Constraint # added constraint: constraint((T0291)F38.CB, (T0291)K59.CB) [> 4.1092 = 6.8487 < 8.9033] w=0.4044 to align # Constraint # added constraint: constraint((T0291)T197.CB, (T0291)V243.CB) [> 3.9994 = 6.6657 < 8.6655] w=0.4030 to align # Constraint # added constraint: constraint((T0291)K62.CB, (T0291)P100.CB) [> 3.6534 = 6.0891 < 7.9158] w=0.3966 to align # Constraint # added constraint: constraint((T0291)M132.CB, (T0291)I160.CB) [> 4.5571 = 7.5951 < 9.8736] w=0.3858 to align # Constraint # added constraint: constraint((T0291)L113.CB, (T0291)V219.CB) [> 4.4616 = 7.4360 < 9.6668] w=0.3858 to align # Constraint # added constraint: constraint((T0291)I218.CB, (T0291)L249.CB) [> 4.3020 = 7.1700 < 9.3209] w=0.3839 to align # Constraint # added constraint: constraint((T0291)I88.CB, (T0291)S169.CB) [> 4.4039 = 7.3397 < 9.5417] w=0.3839 to align # Constraint # added constraint: constraint((T0291)F124.CB, (T0291)Y226.CB) [> 4.3234 = 7.2056 < 9.3673] w=0.3839 to align # Constraint # added constraint: constraint((T0291)Y231.CB, (T0291)V243.CB) [> 3.6248 = 6.0414 < 7.8538] w=0.3787 to align # Constraint # added constraint: constraint((T0291)V63.CB, (T0291)P100.CB) [> 3.8202 = 6.3670 < 8.2771] w=0.3775 to align # Constraint # added constraint: constraint((T0291)A155.CB, (T0291)G227.CA) [> 3.7238 = 6.2064 < 8.0683] w=0.3711 to align # Constraint # added constraint: constraint((T0291)L173.CB, (T0291)I192.CB) [> 4.0570 = 6.7617 < 8.7902] w=0.3711 to align # Constraint # added constraint: constraint((T0291)I79.CB, (T0291)G172.CA) [> 4.1841 = 6.9735 < 9.0655] w=0.3711 to align # Constraint # added constraint: constraint((T0291)L91.CB, (T0291)E106.CB) [> 4.6549 = 7.7582 < 10.0857] w=0.3666 to align # Constraint # added constraint: constraint((T0291)I202.CB, (T0291)V239.CB) [> 3.5697 = 5.9495 < 7.7344] w=0.3666 to align # Constraint # added constraint: constraint((T0291)G135.CA, (T0291)V165.CB) [> 4.4632 = 7.4387 < 9.6703] w=0.3647 to align # Constraint # added constraint: constraint((T0291)F38.CB, (T0291)Y65.CB) [> 3.5646 = 5.9409 < 7.7232] w=0.3647 to align # Constraint # added constraint: constraint((T0291)I27.CB, (T0291)V95.CB) [> 4.0911 = 6.8185 < 8.8640] w=0.3519 to align # Constraint # added constraint: constraint((T0291)L259.CB, (T0291)L287.CB) [> 3.9908 = 6.6513 < 8.6468] w=0.3519 to align # Constraint # added constraint: constraint((T0291)L61.CB, (T0291)R70.CB) [> 3.7544 = 6.2574 < 8.1346] w=0.3519 to align # Constraint # added constraint: constraint((T0291)V63.CB, (T0291)K99.CB) [> 3.5264 = 5.8774 < 7.6406] w=0.3519 to align # Constraint # added constraint: constraint((T0291)L173.CB, (T0291)K191.CB) [> 3.2334 = 5.3891 < 7.0058] w=0.3519 to align # Constraint # added constraint: constraint((T0291)Y148.CB, (T0291)F171.CB) [> 4.4084 = 7.3474 < 9.5516] w=0.3474 to align # Constraint # added constraint: constraint((T0291)V126.CB, (T0291)C255.CB) [> 4.2901 = 7.1501 < 9.2951] w=0.3474 to align # Constraint # added constraint: constraint((T0291)W221.CB, (T0291)W267.CB) [> 4.4488 = 7.4146 < 9.6390] w=0.3455 to align # Constraint # added constraint: constraint((T0291)I127.CB, (T0291)I288.CB) [> 4.1563 = 6.9272 < 9.0054] w=0.3391 to align # Constraint # added constraint: constraint((T0291)T187.CB, (T0291)F207.CB) [> 3.6420 = 6.0699 < 7.8909] w=0.3390 to align # Constraint # added constraint: constraint((T0291)R195.CB, (T0291)W232.CB) [> 3.8398 = 6.3997 < 8.3196] w=0.3340 to align # Constraint # added constraint: constraint((T0291)R151.CB, (T0291)A201.CB) [> 4.5111 = 7.5184 < 9.7740] w=0.3283 to align # Constraint # added constraint: constraint((T0291)L177.CB, (T0291)T208.CB) [> 4.1873 = 6.9788 < 9.0724] w=0.3263 to align # Constraint # added constraint: constraint((T0291)R151.CB, (T0291)K191.CB) [> 3.3221 = 5.5369 < 7.1980] w=0.3199 to align # Constraint # added constraint: constraint((T0291)I192.CB, (T0291)S215.CB) [> 4.3859 = 7.3098 < 9.5028] w=0.3199 to align # Constraint # added constraint: constraint((T0291)W221.CB, (T0291)P251.CB) [> 4.4789 = 7.4649 < 9.7044] w=0.3198 to align # Constraint # added constraint: constraint((T0291)R195.CB, (T0291)N236.CB) [> 4.1812 = 6.9686 < 9.0592] w=0.3135 to align # Constraint # added constraint: constraint((T0291)Q82.CB, (T0291)Y148.CB) [> 4.3946 = 7.3244 < 9.5217] w=0.3135 to align # Constraint # added constraint: constraint((T0291)M108.CB, (T0291)S162.CB) [> 4.5347 = 7.5578 < 9.8251] w=0.3071 to align # Constraint # added constraint: constraint((T0291)A258.CB, (T0291)I283.CB) [> 4.0188 = 6.6980 < 8.7074] w=0.3020 to align # Constraint # added constraint: constraint((T0291)I54.CB, (T0291)E106.CB) [> 4.2195 = 7.0325 < 9.1422] w=0.3013 to align # Constraint # added constraint: constraint((T0291)D152.CB, (T0291)K191.CB) [> 4.2954 = 7.1589 < 9.3066] w=0.3007 to align # Constraint # added constraint: constraint((T0291)R156.CB, (T0291)P193.CB) [> 4.6459 = 7.7432 < 10.0661] w=0.2961 to align # Constraint # added constraint: constraint((T0291)P199.CB, (T0291)I240.CB) [> 4.2034 = 7.0057 < 9.1073] w=0.2956 to align # Constraint # added constraint: constraint((T0291)G93.CA, (T0291)M102.CB) [> 4.6325 = 7.7208 < 10.0371] w=0.2942 to align # Constraint # added constraint: constraint((T0291)G131.CA, (T0291)L164.CB) [> 4.3800 = 7.3000 < 9.4900] w=0.2898 to align # Constraint # added constraint: constraint((T0291)M132.CB, (T0291)L164.CB) [> 4.3143 = 7.1905 < 9.3476] w=0.2879 to align # Constraint # added constraint: constraint((T0291)F38.CB, (T0291)D72.CB) [> 4.1827 = 6.9712 < 9.0626] w=0.2879 to align # Constraint # added constraint: constraint((T0291)I218.CB, (T0291)C266.CB) [> 4.7319 = 7.8866 < 10.2526] w=0.2879 to align # Constraint # added constraint: constraint((T0291)T60.CB, (T0291)I103.CB) [> 4.6671 = 7.7786 < 10.1121] w=0.2879 to align # Constraint # added constraint: constraint((T0291)Q261.CB, (T0291)I283.CB) [> 4.4539 = 7.4231 < 9.6501] w=0.2764 to align # Constraint # added constraint: constraint((T0291)A203.CB, (T0291)I240.CB) [> 4.0979 = 6.8298 < 8.8787] w=0.2764 to align # Constraint # added constraint: constraint((T0291)I194.CB, (T0291)S235.CB) [> 3.6336 = 6.0560 < 7.8728] w=0.2706 to align # Constraint # added constraint: constraint((T0291)T186.CB, (T0291)T208.CB) [> 3.7724 = 6.2873 < 8.1735] w=0.2687 to align # Constraint # added constraint: constraint((T0291)P86.CB, (T0291)G139.CA) [> 4.6014 = 7.6691 < 9.9698] w=0.2643 to align # Constraint # added constraint: constraint((T0291)H120.CB, (T0291)Y226.CB) [> 4.1044 = 6.8407 < 8.8929] w=0.2636 to align # Constraint # added constraint: constraint((T0291)A57.CB, (T0291)I89.CB) [> 4.6575 = 7.7625 < 10.0913] w=0.2623 to align # Constraint # added constraint: constraint((T0291)K191.CB, (T0291)A201.CB) [> 3.9708 = 6.6181 < 8.6035] w=0.2623 to align # Constraint # added constraint: constraint((T0291)P199.CB, (T0291)G246.CA) [> 4.1765 = 6.9609 < 9.0492] w=0.2623 to align # Constraint # added constraint: constraint((T0291)E106.CB, (T0291)N161.CB) [> 4.4970 = 7.4950 < 9.7435] w=0.2560 to align # Constraint # added constraint: constraint((T0291)D265.CB, (T0291)Q279.CB) [> 4.5574 = 7.5957 < 9.8743] w=0.2559 to align # Constraint # added constraint: constraint((T0291)V149.CB, (T0291)T187.CB) [> 4.1974 = 6.9957 < 9.0944] w=0.2559 to align # Constraint # added constraint: constraint((T0291)L133.CB, (T0291)L262.CB) [> 4.5281 = 7.5468 < 9.8108] w=0.2496 to align # Constraint # added constraint: constraint((T0291)G39.CA, (T0291)Y65.CB) [> 4.3326 = 7.2210 < 9.3873] w=0.2495 to align # Constraint # added constraint: constraint((T0291)L153.CB, (T0291)I218.CB) [> 4.6452 = 7.7420 < 10.0646] w=0.2494 to align # Constraint # added constraint: constraint((T0291)G44.CA, (T0291)I54.CB) [> 4.4049 = 7.3415 < 9.5440] w=0.2438 to align # Constraint # added constraint: constraint((T0291)A24.CB, (T0291)S98.CB) [> 3.8627 = 6.4379 < 8.3692] w=0.2368 to align # Constraint # added constraint: constraint((T0291)K62.CB, (T0291)V101.CB) [> 4.5765 = 7.6276 < 9.9158] w=0.2367 to align # Constraint # added constraint: constraint((T0291)T187.CB, (T0291)T208.CB) [> 4.4852 = 7.4753 < 9.7178] w=0.2367 to align # Constraint # added constraint: constraint((T0291)H150.CB, (T0291)D170.CB) [> 4.4402 = 7.4004 < 9.6205] w=0.2323 to align # Constraint # added constraint: constraint((T0291)C42.CB, (T0291)K59.CB) [> 4.6086 = 7.6810 < 9.9853] w=0.2316 to align # Constraint # added constraint: constraint((T0291)V41.CB, (T0291)V56.CB) [> 3.0341 = 5.0568 < 6.5738] w=0.2310 to align # Constraint # added constraint: constraint((T0291)R151.CB, (T0291)S215.CB) [> 4.7046 = 7.8410 < 10.1934] w=0.2304 to align # Constraint # added constraint: constraint((T0291)V149.CB, (T0291)V176.CB) [> 4.6227 = 7.7044 < 10.0158] w=0.2304 to align # Constraint # added constraint: constraint((T0291)N110.CB, (T0291)N163.CB) [> 4.3891 = 7.3151 < 9.5097] w=0.2304 to align # Constraint # added constraint: constraint((T0291)M224.CB, (T0291)Y260.CB) [> 4.5740 = 7.6234 < 9.9104] w=0.2304 to align # Constraint # added constraint: constraint((T0291)G190.CA, (T0291)A201.CB) [> 3.7518 = 6.2530 < 8.1289] w=0.2303 to align # Constraint # added constraint: constraint((T0291)V41.CB, (T0291)I54.CB) [> 3.4488 = 5.7480 < 7.4725] w=0.2246 to align # Constraint # added constraint: constraint((T0291)V41.CB, (T0291)S55.CB) [> 4.1812 = 6.9687 < 9.0594] w=0.2246 to align # Constraint # added constraint: constraint((T0291)G44.CA, (T0291)E53.CB) [> 3.3139 = 5.5232 < 7.1801] w=0.2246 to align # Constraint # added constraint: constraint((T0291)S55.CB, (T0291)M102.CB) [> 3.4411 = 5.7351 < 7.4556] w=0.2246 to align # Constraint # added constraint: constraint((T0291)S55.CB, (T0291)I103.CB) [> 4.1965 = 6.9941 < 9.0923] w=0.2246 to align # Constraint # added constraint: constraint((T0291)V56.CB, (T0291)M102.CB) [> 4.1884 = 6.9807 < 9.0750] w=0.2246 to align # Constraint # added constraint: constraint((T0291)M224.CB, (T0291)P256.CB) [> 4.2897 = 7.1495 < 9.2944] w=0.2240 to align # Constraint # added constraint: constraint((T0291)G39.CA, (T0291)V56.CB) [> 4.0656 = 6.7760 < 8.8088] w=0.2182 to align # Constraint # added constraint: constraint((T0291)A57.CB, (T0291)M102.CB) [> 3.3700 = 5.6166 < 7.3015] w=0.2182 to align # Constraint # added constraint: constraint((T0291)E40.CB, (T0291)V56.CB) [> 4.4519 = 7.4199 < 9.6459] w=0.2182 to align # Constraint # added constraint: constraint((T0291)V33.CB, (T0291)I54.CB) [> 3.9791 = 6.6318 < 8.6214] w=0.2182 to align # Constraint # added constraint: constraint((T0291)F38.CB, (T0291)I58.CB) [> 3.5684 = 5.9474 < 7.7316] w=0.2175 to align # Constraint # added constraint: constraint((T0291)I89.CB, (T0291)F171.CB) [> 4.6684 = 7.7807 < 10.1149] w=0.2131 to align # Constraint # added constraint: constraint((T0291)I89.CB, (T0291)D170.CB) [> 4.2909 = 7.1515 < 9.2970] w=0.2131 to align # Constraint # added constraint: constraint((T0291)G39.CA, (T0291)A57.CB) [> 3.5298 = 5.8830 < 7.6479] w=0.2118 to align # Constraint # added constraint: constraint((T0291)E40.CB, (T0291)A57.CB) [> 3.1149 = 5.1915 < 6.7489] w=0.2118 to align # Constraint # added constraint: constraint((T0291)A57.CB, (T0291)V101.CB) [> 4.3642 = 7.2737 < 9.4558] w=0.2118 to align # Constraint # added constraint: constraint((T0291)C42.CB, (T0291)S55.CB) [> 3.0254 = 5.0423 < 6.5550] w=0.2118 to align # Constraint # added constraint: constraint((T0291)C42.CB, (T0291)I54.CB) [> 4.3738 = 7.2897 < 9.4766] w=0.2118 to align # Constraint # added constraint: constraint((T0291)W221.CB, (T0291)C255.CB) [> 4.5657 = 7.6095 < 9.8924] w=0.2112 to align # Constraint # added constraint: constraint((T0291)F18.CB, (T0291)V94.CB) [> 4.1772 = 6.9619 < 9.0505] w=0.1983 to align # Constraint # added constraint: constraint((T0291)M146.CB, (T0291)V176.CB) [> 4.2570 = 7.0950 < 9.2235] w=0.1982 to align # Constraint # added constraint: constraint((T0291)S198.CB, (T0291)V213.CB) [> 4.7601 = 7.9335 < 10.3135] w=0.1920 to align # Constraint # added constraint: constraint((T0291)R90.CB, (T0291)K167.CB) [> 4.6621 = 7.7701 < 10.1012] w=0.1920 to align # Constraint # added constraint: constraint((T0291)L177.CB, (T0291)T187.CB) [> 3.7214 = 6.2024 < 8.0631] w=0.1919 to align # Constraint # added constraint: constraint((T0291)Y247.CB, (T0291)W267.CB) [> 3.7489 = 6.2482 < 8.1227] w=0.1798 to align # Constraint # added constraint: constraint((T0291)A203.CB, (T0291)V243.CB) [> 3.7185 = 6.1975 < 8.0567] w=0.1798 to align # Constraint # added constraint: constraint((T0291)R195.CB, (T0291)M234.CB) [> 4.3037 = 7.1729 < 9.3248] w=0.1792 to align # Constraint # added constraint: constraint((T0291)E76.CB, (T0291)D170.CB) [> 4.5749 = 7.6248 < 9.9123] w=0.1791 to align # Constraint # added constraint: constraint((T0291)G36.CA, (T0291)K59.CB) [> 4.4131 = 7.3552 < 9.5618] w=0.1740 to align # Constraint # added constraint: constraint((T0291)R195.CB, (T0291)E228.CB) [> 2.9450 = 4.9084 < 6.3809] w=0.1734 to align # Constraint # added constraint: constraint((T0291)I194.CB, (T0291)D238.CB) [> 3.4550 = 5.7583 < 7.4858] w=0.1734 to align # Constraint # added constraint: constraint((T0291)I218.CB, (T0291)E228.CB) [> 3.7417 = 6.2361 < 8.1070] w=0.1734 to align # Constraint # added constraint: constraint((T0291)G189.CA, (T0291)A201.CB) [> 4.3466 = 7.2444 < 9.4177] w=0.1727 to align # Constraint # added constraint: constraint((T0291)R151.CB, (T0291)T187.CB) [> 4.3833 = 7.3054 < 9.4971] w=0.1664 to align # Constraint # added constraint: constraint((T0291)A154.CB, (T0291)I192.CB) [> 4.2499 = 7.0831 < 9.2081] w=0.1600 to align # Constraint # added constraint: constraint((T0291)R188.CB, (T0291)R205.CB) [> 3.7438 = 6.2396 < 8.1115] w=0.1599 to align # Constraint # added constraint: constraint((T0291)I192.CB, (T0291)S211.CB) [> 4.4529 = 7.4216 < 9.6480] w=0.1599 to align # Constraint # added constraint: constraint((T0291)F38.CB, (T0291)V63.CB) [> 3.7864 = 6.3107 < 8.2039] w=0.1599 to align # Constraint # added constraint: constraint((T0291)I88.CB, (T0291)F171.CB) [> 4.1500 = 6.9166 < 8.9916] w=0.1555 to align # Constraint # added constraint: constraint((T0291)F38.CB, (T0291)T60.CB) [> 4.4019 = 7.3364 < 9.5373] w=0.1485 to align # Constraint # added constraint: constraint((T0291)I202.CB, (T0291)A242.CB) [> 3.7105 = 6.1842 < 8.0395] w=0.1414 to align # Constraint # added constraint: constraint((T0291)I192.CB, (T0291)I202.CB) [> 4.3175 = 7.1958 < 9.3545] w=0.1408 to align # Constraint # added constraint: constraint((T0291)G217.CA, (T0291)P230.CB) [> 4.6577 = 7.7628 < 10.0917] w=0.1407 to align # Constraint # added constraint: constraint((T0291)E37.CB, (T0291)G172.CA) [> 3.3721 = 5.6202 < 7.3063] w=0.1344 to align # Constraint # added constraint: constraint((T0291)Y107.CB, (T0291)N161.CB) [> 4.6542 = 7.7569 < 10.0840] w=0.1344 to align # Constraint # added constraint: constraint((T0291)V15.CB, (T0291)T96.CB) [> 3.7585 = 6.2642 < 8.1435] w=0.1280 to align # Constraint # added constraint: constraint((T0291)I127.CB, (T0291)P291.CB) [> 3.1147 = 5.1912 < 6.7485] w=0.1280 to align # Constraint # added constraint: constraint((T0291)F73.CB, (T0291)V94.CB) [> 4.5234 = 7.5390 < 9.8007] w=0.1280 to align # Constraint # added constraint: constraint((T0291)V130.CB, (T0291)L294.CB) [> 3.8341 = 6.3902 < 8.3072] w=0.1229 to align # Constraint # added constraint: constraint((T0291)E37.CB, (T0291)L173.CB) [> 4.3580 = 7.2633 < 9.4423] w=0.1171 to align # Constraint # added constraint: constraint((T0291)E37.CB, (T0291)D170.CB) [> 4.1497 = 6.9162 < 8.9911] w=0.1171 to align # Constraint # added constraint: constraint((T0291)P193.CB, (T0291)S215.CB) [> 4.7073 = 7.8455 < 10.1992] w=0.1152 to align # Constraint # added constraint: constraint((T0291)I218.CB, (T0291)M263.CB) [> 4.7648 = 7.9412 < 10.3236] w=0.1152 to align # Constraint # added constraint: constraint((T0291)V130.CB, (T0291)P256.CB) [> 4.5919 = 7.6532 < 9.9492] w=0.1152 to align # Constraint # added constraint: constraint((T0291)L48.CB, (T0291)E92.CB) [> 4.1534 = 6.9224 < 8.9991] w=0.1152 to align # Constraint # added constraint: constraint((T0291)L153.CB, (T0291)I192.CB) [> 4.5409 = 7.5682 < 9.8386] w=0.1152 to align # Constraint # added constraint: constraint((T0291)R195.CB, (T0291)E222.CB) [> 4.6470 = 7.7451 < 10.0686] w=0.1152 to align # Constraint # added constraint: constraint((T0291)F116.CB, (T0291)A155.CB) [> 4.7180 = 7.8633 < 10.2223] w=0.1152 to align # Constraint # added constraint: constraint((T0291)N157.CB, (T0291)F171.CB) [> 4.1976 = 6.9961 < 9.0949] w=0.1152 to align # Constraint # added constraint: constraint((T0291)G189.CA, (T0291)Y204.CB) [> 4.0358 = 6.7263 < 8.7441] w=0.1152 to align # Constraint # added constraint: constraint((T0291)R188.CB, (T0291)K206.CB) [> 3.2437 = 5.4062 < 7.0281] w=0.1151 to align # Constraint # added constraint: constraint((T0291)A183.CB, (T0291)T208.CB) [> 3.9592 = 6.5988 < 8.5784] w=0.1088 to align # Constraint # added constraint: constraint((T0291)I194.CB, (T0291)V243.CB) [> 4.5034 = 7.5057 < 9.7575] w=0.1087 to align # Constraint # added constraint: constraint((T0291)I194.CB, (T0291)M234.CB) [> 3.7991 = 6.3318 < 8.2313] w=0.1030 to align # Constraint # added constraint: constraint((T0291)C42.CB, (T0291)V56.CB) [> 4.6613 = 7.7688 < 10.0995] w=0.1030 to align # Constraint # added constraint: constraint((T0291)G131.CA, (T0291)L287.CB) [> 4.2441 = 7.0736 < 9.1956] w=0.1023 to align # Constraint # added constraint: constraint((T0291)D179.CB, (T0291)T208.CB) [> 4.2050 = 7.0083 < 9.1108] w=0.1023 to align # Constraint # added constraint: constraint((T0291)H150.CB, (T0291)G172.CA) [> 3.7479 = 6.2465 < 8.1204] w=0.0979 to align # Constraint # added constraint: constraint((T0291)G36.CA, (T0291)V176.CB) [> 3.8426 = 6.4043 < 8.3256] w=0.0960 to align # Constraint # added constraint: constraint((T0291)G174.CA, (T0291)K191.CB) [> 4.1803 = 6.9672 < 9.0574] w=0.0960 to align # Constraint # added constraint: constraint((T0291)V130.CB, (T0291)D285.CB) [> 4.2374 = 7.0623 < 9.1810] w=0.0960 to align # Constraint # added constraint: constraint((T0291)L249.CB, (T0291)Y260.CB) [> 3.8939 = 6.4899 < 8.4369] w=0.0896 to align # Constraint # added constraint: constraint((T0291)E40.CB, (T0291)L61.CB) [> 4.4420 = 7.4033 < 9.6243] w=0.0896 to align # Constraint # added constraint: constraint((T0291)I127.CB, (T0291)G292.CA) [> 3.8167 = 6.3611 < 8.2695] w=0.0896 to align # Constraint # added constraint: constraint((T0291)I29.CB, (T0291)T60.CB) [> 4.6062 = 7.6770 < 9.9801] w=0.0832 to align # Constraint # added constraint: constraint((T0291)V130.CB, (T0291)K295.CB) [> 4.2091 = 7.0151 < 9.1197] w=0.0832 to align # Constraint # added constraint: constraint((T0291)F18.CB, (T0291)T96.CB) [> 3.9293 = 6.5488 < 8.5135] w=0.0832 to align # Constraint # added constraint: constraint((T0291)A14.CB, (T0291)L74.CB) [> 4.3364 = 7.2274 < 9.3956] w=0.0832 to align # Constraint # added constraint: constraint((T0291)L173.CB, (T0291)G190.CA) [> 4.1422 = 6.9036 < 8.9747] w=0.0832 to align # Constraint # added constraint: constraint((T0291)G36.CA, (T0291)R156.CB) [> 4.4000 = 7.3333 < 9.5333] w=0.0787 to align # Constraint # added constraint: constraint((T0291)F18.CB, (T0291)A77.CB) [> 4.2007 = 7.0012 < 9.1016] w=0.0768 to align # Constraint # added constraint: constraint((T0291)V41.CB, (T0291)F171.CB) [> 3.6129 = 6.0216 < 7.8280] w=0.0768 to align # Constraint # added constraint: constraint((T0291)A183.CB, (T0291)P193.CB) [> 3.7276 = 6.2126 < 8.0764] w=0.0768 to align # Constraint # added constraint: constraint((T0291)R175.CB, (T0291)K191.CB) [> 4.0196 = 6.6994 < 8.7092] w=0.0768 to align # Constraint # added constraint: constraint((T0291)V15.CB, (T0291)S78.CB) [> 4.0405 = 6.7341 < 8.7543] w=0.0768 to align # Constraint # added constraint: constraint((T0291)L91.CB, (T0291)F171.CB) [> 4.6004 = 7.6674 < 9.9676] w=0.0768 to align # Constraint # added constraint: constraint((T0291)A184.CB, (T0291)T208.CB) [> 4.3570 = 7.2617 < 9.4402] w=0.0768 to align # Constraint # added constraint: constraint((T0291)G36.CA, (T0291)D170.CB) [> 3.8275 = 6.3793 < 8.2930] w=0.0768 to align # Constraint # added constraint: constraint((T0291)L129.CB, (T0291)Y226.CB) [> 4.4292 = 7.3821 < 9.5967] w=0.0768 to align # Constraint # added constraint: constraint((T0291)G131.CA, (T0291)P291.CB) [> 4.0762 = 6.7937 < 8.8318] w=0.0768 to align # Constraint # added constraint: constraint((T0291)R188.CB, (T0291)Y204.CB) [> 3.9349 = 6.5582 < 8.5257] w=0.0767 to align # Constraint # added constraint: constraint((T0291)P199.CB, (T0291)V239.CB) [> 3.9619 = 6.6032 < 8.5841] w=0.0710 to align # Constraint # added constraint: constraint((T0291)G34.CA, (T0291)V176.CB) [> 4.5375 = 7.5626 < 9.8313] w=0.0704 to align # Constraint # added constraint: constraint((T0291)A184.CB, (T0291)P193.CB) [> 3.9215 = 6.5359 < 8.4967] w=0.0704 to align # Constraint # added constraint: constraint((T0291)I127.CB, (T0291)L294.CB) [> 4.4807 = 7.4679 < 9.7082] w=0.0704 to align # Constraint # added constraint: constraint((T0291)I194.CB, (T0291)Y231.CB) [> 4.5182 = 7.5304 < 9.7895] w=0.0704 to align # Constraint # added constraint: constraint((T0291)V15.CB, (T0291)L74.CB) [> 3.2980 = 5.4966 < 7.1456] w=0.0704 to align # Constraint # added constraint: constraint((T0291)R151.CB, (T0291)G190.CA) [> 4.1848 = 6.9747 < 9.0671] w=0.0704 to align # Constraint # added constraint: constraint((T0291)G131.CA, (T0291)L294.CB) [> 4.1483 = 6.9138 < 8.9879] w=0.0704 to align # Constraint # added constraint: constraint((T0291)I127.CB, (T0291)K295.CB) [> 3.9003 = 6.5005 < 8.4506] w=0.0704 to align # Constraint # added constraint: constraint((T0291)I127.CB, (T0291)S293.CB) [> 3.4854 = 5.8090 < 7.5517] w=0.0640 to align # Constraint # added constraint: constraint((T0291)V149.CB, (T0291)G172.CA) [> 4.0543 = 6.7572 < 8.7843] w=0.0595 to align # Constraint # added constraint: constraint((T0291)I127.CB, (T0291)T298.CB) [> 3.2170 = 5.3616 < 6.9701] w=0.0582 to align # Constraint # added constraint: constraint((T0291)A184.CB, (T0291)I194.CB) [> 3.1154 = 5.1923 < 6.7500] w=0.0576 to align # Constraint # added constraint: constraint((T0291)L133.CB, (T0291)C166.CB) [> 4.6993 = 7.8322 < 10.1818] w=0.0576 to align # Constraint # added constraint: constraint((T0291)N157.CB, (T0291)L173.CB) [> 4.3420 = 7.2367 < 9.4077] w=0.0576 to align # Constraint # added constraint: constraint((T0291)V41.CB, (T0291)T105.CB) [> 4.4885 = 7.4808 < 9.7250] w=0.0576 to align # Constraint # added constraint: constraint((T0291)M80.CB, (T0291)S169.CB) [> 4.3257 = 7.2095 < 9.3723] w=0.0576 to align # Constraint # added constraint: constraint((T0291)L46.CB, (T0291)G93.CA) [> 4.6588 = 7.7647 < 10.0941] w=0.0576 to align # Constraint # added constraint: constraint((T0291)Y107.CB, (T0291)S162.CB) [> 4.6466 = 7.7444 < 10.0677] w=0.0576 to align # Constraint # added constraint: constraint((T0291)I127.CB, (T0291)I297.CB) [> 3.5631 = 5.9384 < 7.7200] w=0.0576 to align # Constraint # added constraint: constraint((T0291)F116.CB, (T0291)V223.CB) [> 4.6598 = 7.7663 < 10.0962] w=0.0576 to align # Constraint # added constraint: constraint((T0291)I218.CB, (T0291)Y247.CB) [> 4.5068 = 7.5114 < 9.7647] w=0.0576 to align # Constraint # added constraint: constraint((T0291)I136.CB, (T0291)L220.CB) [> 4.7333 = 7.8888 < 10.2554] w=0.0576 to align # Constraint # added constraint: constraint((T0291)G190.CA, (T0291)Y204.CB) [> 4.3343 = 7.2238 < 9.3909] w=0.0576 to align # Constraint # added constraint: constraint((T0291)G131.CA, (T0291)I297.CB) [> 3.1861 = 5.3102 < 6.9033] w=0.0518 to align # Constraint # added constraint: constraint((T0291)V130.CB, (T0291)I297.CB) [> 2.7890 = 4.6484 < 6.0429] w=0.0518 to align # Constraint # added constraint: constraint((T0291)G131.CA, (T0291)A300.CB) [> 4.2500 = 7.0834 < 9.2084] w=0.0518 to align # Constraint # added constraint: constraint((T0291)P199.CB, (T0291)Y247.CB) [> 3.8606 = 6.4343 < 8.3646] w=0.0512 to align # Constraint # added constraint: constraint((T0291)P193.CB, (T0291)V239.CB) [> 3.6598 = 6.0998 < 7.9297] w=0.0512 to align # Constraint # added constraint: constraint((T0291)V130.CB, (T0291)I296.CB) [> 3.4449 = 5.7415 < 7.4640] w=0.0512 to align # Constraint # added constraint: constraint((T0291)K59.CB, (T0291)D170.CB) [> 4.5201 = 7.5335 < 9.7935] w=0.0512 to align # Constraint # added constraint: constraint((T0291)G131.CA, (T0291)T298.CB) [> 3.6247 = 6.0411 < 7.8535] w=0.0454 to align # Constraint # added constraint: constraint((T0291)V130.CB, (T0291)T298.CB) [> 4.0238 = 6.7063 < 8.7182] w=0.0454 to align # Constraint # added constraint: constraint((T0291)H16.CB, (T0291)T96.CB) [> 4.2934 = 7.1557 < 9.3024] w=0.0448 to align # Constraint # added constraint: constraint((T0291)L129.CB, (T0291)I297.CB) [> 4.2083 = 7.0138 < 9.1180] w=0.0448 to align # Constraint # added constraint: constraint((T0291)I127.CB, (T0291)I296.CB) [> 3.3286 = 5.5476 < 7.2119] w=0.0448 to align # Constraint # added constraint: constraint((T0291)I127.CB, (T0291)R303.CB) [> 3.9444 = 6.5740 < 8.5462] w=0.0448 to align # Constraint # added constraint: constraint((T0291)F116.CB, (T0291)L164.CB) [> 4.3599 = 7.2664 < 9.4464] w=0.0448 to align # Constraint # added constraint: constraint((T0291)E40.CB, (T0291)I58.CB) [> 4.6832 = 7.8054 < 10.1470] w=0.0448 to align # Constraint # added constraint: constraint((T0291)A35.CB, (T0291)G190.CA) [> 4.6653 = 7.7756 < 10.1083] w=0.0403 to align # Constraint # added constraint: constraint((T0291)G34.CA, (T0291)F171.CB) [> 4.0096 = 6.6827 < 8.6875] w=0.0384 to align # Constraint # added constraint: constraint((T0291)T186.CB, (T0291)I202.CB) [> 4.4760 = 7.4600 < 9.6980] w=0.0384 to align # Constraint # added constraint: constraint((T0291)R156.CB, (T0291)L173.CB) [> 4.2837 = 7.1395 < 9.2813] w=0.0384 to align # Constraint # added constraint: constraint((T0291)N157.CB, (T0291)G174.CA) [> 4.0101 = 6.6835 < 8.6885] w=0.0384 to align # Constraint # added constraint: constraint((T0291)N157.CB, (T0291)G172.CA) [> 4.7356 = 7.8926 < 10.2604] w=0.0384 to align # Constraint # added constraint: constraint((T0291)V41.CB, (T0291)L173.CB) [> 3.8281 = 6.3801 < 8.2942] w=0.0384 to align # Constraint # added constraint: constraint((T0291)L173.CB, (T0291)P193.CB) [> 4.7431 = 7.9052 < 10.2768] w=0.0384 to align # Constraint # added constraint: constraint((T0291)R156.CB, (T0291)F171.CB) [> 4.5191 = 7.5319 < 9.7914] w=0.0384 to align # Constraint # added constraint: constraint((T0291)G39.CA, (T0291)F171.CB) [> 4.5844 = 7.6407 < 9.9329] w=0.0384 to align # Constraint # added constraint: constraint((T0291)F124.CB, (T0291)I297.CB) [> 3.8284 = 6.3807 < 8.2949] w=0.0384 to align # Constraint # added constraint: constraint((T0291)E76.CB, (T0291)L91.CB) [> 4.4385 = 7.3975 < 9.6167] w=0.0384 to align # Constraint # added constraint: constraint((T0291)V149.CB, (T0291)E178.CB) [> 3.0340 = 5.0567 < 6.5738] w=0.0384 to align # Constraint # added constraint: constraint((T0291)T186.CB, (T0291)A201.CB) [> 4.4367 = 7.3945 < 9.6129] w=0.0384 to align # Constraint # added constraint: constraint((T0291)V33.CB, (T0291)F171.CB) [> 4.3551 = 7.2584 < 9.4360] w=0.0384 to align # Constraint # added constraint: constraint((T0291)G34.CA, (T0291)L173.CB) [> 3.5451 = 5.9085 < 7.6811] w=0.0384 to align # Constraint # added constraint: constraint((T0291)A57.CB, (T0291)F171.CB) [> 4.1705 = 6.9509 < 9.0362] w=0.0384 to align # Constraint # added constraint: constraint((T0291)E200.CB, (T0291)W214.CB) [> 4.6839 = 7.8066 < 10.1485] w=0.0384 to align # Constraint # added constraint: constraint((T0291)E109.CB, (T0291)L159.CB) [> 3.1954 = 5.3257 < 6.9234] w=0.0384 to align # Constraint # added constraint: constraint((T0291)L91.CB, (T0291)D170.CB) [> 4.2866 = 7.1444 < 9.2877] w=0.0384 to align # Constraint # added constraint: constraint((T0291)A155.CB, (T0291)W196.CB) [> 4.7186 = 7.8644 < 10.2237] w=0.0384 to align # Constraint # added constraint: constraint((T0291)I89.CB, (T0291)Y107.CB) [> 4.7369 = 7.8948 < 10.2633] w=0.0384 to align # Constraint # added constraint: constraint((T0291)G131.CA, (T0291)V165.CB) [> 3.9631 = 6.6052 < 8.5868] w=0.0384 to align # Constraint # added constraint: constraint((T0291)Y185.CB, (T0291)T208.CB) [> 4.4819 = 7.4698 < 9.7107] w=0.0320 to align # Constraint # added constraint: constraint((T0291)K191.CB, (T0291)I202.CB) [> 4.5353 = 7.5588 < 9.8264] w=0.0320 to align # Constraint # added constraint: constraint((T0291)L164.CB, (T0291)L307.CB) [> 3.3844 = 5.6406 < 7.3327] w=0.0320 to align # Constraint # added constraint: constraint((T0291)I127.CB, (T0291)A302.CB) [> 3.3841 = 5.6402 < 7.3322] w=0.0320 to align # Constraint # added constraint: constraint((T0291)V130.CB, (T0291)A301.CB) [> 4.5215 = 7.5359 < 9.7967] w=0.0320 to align # Constraint # added constraint: constraint((T0291)I160.CB, (T0291)I296.CB) [> 4.3510 = 7.2517 < 9.4273] w=0.0320 to align # Constraint # added constraint: constraint((T0291)I127.CB, (T0291)P304.CB) [> 2.4168 = 4.0280 < 5.2364] w=0.0262 to align # Constraint # added constraint: constraint((T0291)V281.CB, (T0291)A300.CB) [> 4.1000 = 6.8333 < 8.8833] w=0.0262 to align # Constraint # added constraint: constraint((T0291)I127.CB, (T0291)L308.CB) [> 3.6788 = 6.1313 < 7.9706] w=0.0256 to align # Constraint # added constraint: constraint((T0291)V130.CB, (T0291)A302.CB) [> 2.8209 = 4.7014 < 6.1119] w=0.0256 to align # Constraint # added constraint: constraint((T0291)A137.CB, (T0291)L294.CB) [> 4.3928 = 7.3214 < 9.5178] w=0.0256 to align # Constraint # added constraint: constraint((T0291)E37.CB, (T0291)N157.CB) [> 3.2918 = 5.4863 < 7.1322] w=0.0211 to align # Constraint # added constraint: constraint((T0291)G36.CA, (T0291)N157.CB) [> 3.1175 = 5.1958 < 6.7545] w=0.0211 to align # Constraint # added constraint: constraint((T0291)P199.CB, (T0291)P250.CB) [> 4.2278 = 7.0464 < 9.1603] w=0.0198 to align # Constraint # added constraint: constraint((T0291)Y8.CB, (T0291)V149.CB) [> 4.5585 = 7.5975 < 9.8768] w=0.0192 to align # Constraint # added constraint: constraint((T0291)P5.CB, (T0291)T208.CB) [> 3.2805 = 5.4675 < 7.1077] w=0.0192 to align # Constraint # added constraint: constraint((T0291)G36.CA, (T0291)S169.CB) [> 2.3646 = 3.9409 < 5.1232] w=0.0192 to align # Constraint # added constraint: constraint((T0291)G36.CA, (T0291)L159.CB) [> 3.9442 = 6.5737 < 8.5458] w=0.0192 to align # Constraint # added constraint: constraint((T0291)G36.CA, (T0291)I158.CB) [> 4.7943 = 7.9905 < 10.3876] w=0.0192 to align # Constraint # added constraint: constraint((T0291)A35.CB, (T0291)L159.CB) [> 3.7875 = 6.3124 < 8.2062] w=0.0192 to align # Constraint # added constraint: constraint((T0291)M132.CB, (T0291)V219.CB) [> 4.5905 = 7.6508 < 9.9461] w=0.0192 to align # Constraint # added constraint: constraint((T0291)G131.CA, (T0291)I296.CB) [> 3.9831 = 6.6386 < 8.6301] w=0.0192 to align # Constraint # added constraint: constraint((T0291)E178.CB, (T0291)T208.CB) [> 4.2660 = 7.1100 < 9.2429] w=0.0192 to align # Constraint # added constraint: constraint((T0291)S198.CB, (T0291)T208.CB) [> 4.7313 = 7.8856 < 10.2512] w=0.0192 to align # Constraint # added constraint: constraint((T0291)G39.CA, (T0291)G172.CA) [> 4.5538 = 7.5897 < 9.8666] w=0.0192 to align # Constraint # added constraint: constraint((T0291)A184.CB, (T0291)T197.CB) [> 4.0141 = 6.6901 < 8.6971] w=0.0192 to align # Constraint # added constraint: constraint((T0291)L159.CB, (T0291)L173.CB) [> 4.4950 = 7.4916 < 9.7391] w=0.0192 to align # Constraint # added constraint: constraint((T0291)R156.CB, (T0291)G190.CA) [> 4.7300 = 7.8833 < 10.2483] w=0.0192 to align # Constraint # added constraint: constraint((T0291)E222.CB, (T0291)L249.CB) [> 4.6420 = 7.7367 < 10.0578] w=0.0192 to align # Constraint # added constraint: constraint((T0291)L220.CB, (T0291)C255.CB) [> 4.2673 = 7.1121 < 9.2458] w=0.0192 to align # Constraint # added constraint: constraint((T0291)Y185.CB, (T0291)R195.CB) [> 4.6863 = 7.8105 < 10.1536] w=0.0192 to align # Constraint # added constraint: constraint((T0291)L48.CB, (T0291)G93.CA) [> 4.5895 = 7.6492 < 9.9440] w=0.0192 to align # Constraint # added constraint: constraint((T0291)V41.CB, (T0291)G174.CA) [> 3.5802 = 5.9670 < 7.7571] w=0.0192 to align # Constraint # added constraint: constraint((T0291)E40.CB, (T0291)G174.CA) [> 3.3245 = 5.5408 < 7.2030] w=0.0192 to align # Constraint # added constraint: constraint((T0291)E37.CB, (T0291)S169.CB) [> 2.6073 = 4.3455 < 5.6492] w=0.0192 to align # Constraint # added constraint: constraint((T0291)F124.CB, (T0291)I296.CB) [> 4.7459 = 7.9098 < 10.2827] w=0.0192 to align # Constraint # added constraint: constraint((T0291)L159.CB, (T0291)D170.CB) [> 4.4896 = 7.4827 < 9.7275] w=0.0192 to align # Constraint # added constraint: constraint((T0291)I158.CB, (T0291)D170.CB) [> 4.6431 = 7.7384 < 10.0599] w=0.0192 to align # Constraint # added constraint: constraint((T0291)V56.CB, (T0291)G93.CA) [> 4.7394 = 7.8990 < 10.2687] w=0.0192 to align # Constraint # added constraint: constraint((T0291)V33.CB, (T0291)L173.CB) [> 4.2860 = 7.1433 < 9.2862] w=0.0192 to align # Constraint # added constraint: constraint((T0291)Y8.CB, (T0291)V94.CB) [> 3.3496 = 5.5826 < 7.2573] w=0.0192 to align # Constraint # added constraint: constraint((T0291)R156.CB, (T0291)S169.CB) [> 4.7782 = 7.9637 < 10.3528] w=0.0192 to align # Constraint # added constraint: constraint((T0291)G190.CA, (T0291)F207.CB) [> 4.0100 = 6.6833 < 8.6883] w=0.0192 to align # Constraint # added constraint: constraint((T0291)T208.CB, (T0291)K269.CB) [> 4.6477 = 7.7462 < 10.0701] w=0.0192 to align # Constraint # added constraint: constraint((T0291)T197.CB, (T0291)I218.CB) [> 4.5914 = 7.6523 < 9.9480] w=0.0192 to align # Constraint # added constraint: constraint((T0291)W196.CB, (T0291)E222.CB) [> 4.4732 = 7.4554 < 9.6920] w=0.0192 to align # Constraint # added constraint: constraint((T0291)L173.CB, (T0291)Y185.CB) [> 3.3966 = 5.6611 < 7.3594] w=0.0192 to align # Constraint # added constraint: constraint((T0291)G217.CA, (T0291)I280.CB) [> 4.7504 = 7.9173 < 10.2924] w=0.0192 to align # Constraint # added constraint: constraint((T0291)H85.CB, (T0291)V168.CB) [> 4.7574 = 7.9290 < 10.3077] w=0.0192 to align # Constraint # added constraint: constraint((T0291)F124.CB, (T0291)S225.CB) [> 4.3133 = 7.1888 < 9.3454] w=0.0192 to align # Constraint # added constraint: constraint((T0291)E222.CB, (T0291)V239.CB) [> 4.3590 = 7.2650 < 9.4445] w=0.0192 to align # Constraint # added constraint: constraint((T0291)T197.CB, (T0291)W232.CB) [> 4.5673 = 7.6122 < 9.8959] w=0.0192 to align # Constraint # added constraint: constraint((T0291)I88.CB, (T0291)R175.CB) [> 4.6140 = 7.6900 < 9.9970] w=0.0192 to align # Constraint # added constraint: constraint((T0291)I160.CB, (T0291)P304.CB) [> 4.3595 = 7.2659 < 9.4457] w=0.0134 to align # Constraint # added constraint: constraint((T0291)V3.CB, (T0291)G64.CA) [> 4.0604 = 6.7674 < 8.7976] w=0.0128 to align # Constraint # added constraint: constraint((T0291)S198.CB, (T0291)M234.CB) [> 4.2776 = 7.1293 < 9.2682] w=0.0128 to align # Constraint # added constraint: constraint((T0291)D84.CB, (T0291)M146.CB) [> 3.9018 = 6.5030 < 8.4539] w=0.0128 to align # Constraint # added constraint: constraint((T0291)I29.CB, (T0291)M102.CB) [> 4.3516 = 7.2527 < 9.4284] w=0.0128 to align # Constraint # added constraint: constraint((T0291)A24.CB, (T0291)L46.CB) [> 4.1854 = 6.9757 < 9.0684] w=0.0128 to align # Constraint # added constraint: constraint((T0291)G131.CA, (T0291)L308.CB) [> 4.3621 = 7.2702 < 9.4513] w=0.0128 to align # Constraint # added constraint: constraint((T0291)A14.CB, (T0291)R90.CB) [> 4.7322 = 7.8870 < 10.2531] w=0.0128 to align # Constraint # added constraint: constraint((T0291)T7.CB, (T0291)R90.CB) [> 3.4702 = 5.7837 < 7.5188] w=0.0128 to align # Constraint # added constraint: constraint((T0291)A77.CB, (T0291)R90.CB) [> 4.4809 = 7.4681 < 9.7085] w=0.0128 to align # Constraint # added constraint: constraint((T0291)Y8.CB, (T0291)V95.CB) [> 3.6131 = 6.0219 < 7.8285] w=0.0128 to align # Constraint # added constraint: constraint((T0291)R70.CB, (T0291)G172.CA) [> 4.4363 = 7.3939 < 9.6121] w=0.0128 to align # Constraint # added constraint: constraint((T0291)V56.CB, (T0291)D170.CB) [> 4.7619 = 7.9365 < 10.3175] w=0.0128 to align # Constraint # added constraint: constraint((T0291)V3.CB, (T0291)V15.CB) [> 2.8868 = 4.8113 < 6.2547] w=0.0064 to align # Constraint # added constraint: constraint((T0291)V3.CB, (T0291)V94.CB) [> 3.6625 = 6.1042 < 7.9355] w=0.0064 to align # Constraint # added constraint: constraint((T0291)I29.CB, (T0291)L46.CB) [> 3.1615 = 5.2691 < 6.8498] w=0.0064 to align # Constraint # added constraint: constraint((T0291)I160.CB, (T0291)L307.CB) [> 3.8131 = 6.3551 < 8.2617] w=0.0064 to align # Constraint # added constraint: constraint((T0291)H16.CB, (T0291)E40.CB) [> 3.5529 = 5.9215 < 7.6979] w=0.0064 to align # Constraint # added constraint: constraint((T0291)C166.CB, (T0291)R303.CB) [> 4.2298 = 7.0496 < 9.1645] w=0.0064 to align # Constraint # added constraint: constraint((T0291)R195.CB, (T0291)L307.CB) [> 4.4881 = 7.4802 < 9.7242] w=0.0064 to align # Constraint # added constraint: constraint((T0291)W232.CB, (T0291)A301.CB) [> 4.1619 = 6.9364 < 9.0174] w=0.0064 to align # Constraint # added constraint: constraint((T0291)V33.CB, (T0291)V56.CB) [> 4.1498 = 6.9163 < 8.9912] w=0.0064 to align # Constraint # added constraint: constraint((T0291)V56.CB, (T0291)M108.CB) [> 4.3975 = 7.3292 < 9.5279] w=0.0064 to align # Constraint # added constraint: constraint((T0291)L117.CB, (T0291)L284.CB) [> 3.6754 = 6.1256 < 7.9633] w=0.0064 to align # Constraint # added constraint: constraint((T0291)T7.CB, (T0291)V95.CB) [> 2.9141 = 4.8568 < 6.3139] w=0.0064 to align # Constraint # added constraint: constraint((T0291)L74.CB, (T0291)G93.CA) [> 4.5476 = 7.5793 < 9.8531] w=0.0064 to align # Constraint # added constraint: constraint((T0291)G190.CA, (T0291)I240.CB) [> 4.0048 = 6.6746 < 8.6770] w=0.0064 to align # Constraint # added constraint: constraint((T0291)C166.CB, (T0291)A300.CB) [> 4.1361 = 6.8934 < 8.9615] w=0.0064 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0291/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0291/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0291)G139.O and (T0291)M140.N only 0 apart, marking (T0291)M140.N as missing WARNING: atoms too close: (T0291)Y142.O and (T0291)L143.N only 0 apart, marking (T0291)L143.N as missing WARNING: atoms too close: (T0291)V168.O and (T0291)S169.N only 0 apart, marking (T0291)S169.N as missing # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 WARNING: atom 1146 has residue number 1 < previous residue 301 in servers/mGen-3D_TS1.pdb.gz # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0291 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 247 model score -0.5272 model score -0.5317 model score -0.5910 model score -0.4717 model score -0.4312 model score -0.4889 model score -0.5455 model score -0.5760 model score -0.4647 model score -0.4851 model score -0.4872 model score -0.4874 model score -0.6083 model score -0.5104 model score -0.5173 model score -0.6069 model score -0.5427 model score 0.5743 model score -0.0741 model score 1.2571 model score 1.7987 model score 1.6145 model score 1.7146 model score 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2.5230 weight: 0.4532 eval: 1.2771 min: -0.6514 max: 2.5230 weight: 0.4532 eval: 1.2771 min: -0.6514 max: 2.5230 weight: 0.4533 eval: 1.2771 min: -0.6514 max: 2.5230 weight: 0.4533 eval: 1.2770 min: -0.6514 max: 2.5230 weight: 0.9720 eval: -0.5526 min: -0.6514 max: 2.5230 weight: 0.4532 eval: 1.2771 min: -0.6514 max: 2.5230 weight: 0.4532 eval: 1.2771 min: -0.6514 max: 2.5230 weight: 0.4532 eval: 1.2771 min: -0.6514 max: 2.5230 weight: 0.4533 eval: 1.2771 min: -0.6514 max: 2.5230 weight: 0.4533 eval: 1.2770 min: -0.6514 max: 2.5230 weight: 0.9989 eval: -0.6475 min: -0.6514 max: 2.5230 weight: 0.9857 eval: -0.6008 min: -0.6514 max: 2.5230 weight: 0.9672 eval: -0.5355 min: -0.6514 max: 2.5230 weight: 0.9949 eval: -0.6332 min: -0.6514 max: 2.5230 weight: 0.9787 eval: -0.5762 min: -0.6514 max: 2.5230 weight: 0.9866 eval: -0.6041 min: -0.6514 max: 2.5230 weight: 0.9695 eval: -0.5436 min: -0.6514 max: 2.5230 weight: 0.4532 eval: 1.2771 min: -0.6514 max: 2.5230 weight: 0.4533 eval: 1.2770 min: -0.6514 max: 2.5230 weight: 0.4533 eval: 1.2770 min: -0.6514 max: 2.5230 weight: 0.4532 eval: 1.2771 min: -0.6514 max: 2.5230 weight: 0.4532 eval: 1.2771 min: -0.6514 max: 2.5230 weight: 0.4532 eval: 1.2771 min: -0.6514 max: 2.5230 weight: 0.4533 eval: 1.2771 min: -0.6514 max: 2.5230 weight: 0.4532 eval: 1.2771 min: -0.6514 max: 2.5230 weight: 0.4533 eval: 1.2770 min: -0.6514 max: 2.5230 weight: 0.4533 eval: 1.2770 min: -0.6514 max: 2.5230 weight: 0.1399 eval: 2.3824 min: -0.6514 max: 2.5230 weight: 0.1789 eval: 2.2447 min: -0.6514 max: 2.5230 weight: 0.1828 eval: 2.2309 min: -0.6514 max: 2.5230 weight: 0.1000 eval: 2.5230 min: -0.6514 max: 2.5230 weight: 0.1831 eval: 2.2301 min: -0.6514 max: 2.5230 weight: 0.1806 eval: 2.2386 min: -0.6514 max: 2.5230 weight: 0.9599 eval: -0.5098 min: -0.6514 max: 2.5230 weight: 0.9681 eval: -0.5389 min: -0.6514 max: 2.5230 weight: 0.9666 eval: -0.5336 min: -0.6514 max: 2.5230 weight: 0.9455 eval: -0.4590 min: -0.6514 max: 2.5230 weight: 0.9108 eval: -0.3367 min: -0.6514 max: 2.5230 weight: 0.9619 eval: -0.5169 min: -0.6514 max: 2.5230 weight: 0.9619 eval: -0.5169 min: -0.6514 max: 2.5230 weight: 0.9608 eval: -0.5130 min: -0.6514 max: 2.5230 weight: 0.9608 eval: -0.5130 min: -0.6514 max: 2.5230 weight: 0.9687 eval: -0.5409 min: -0.6514 max: 2.5230 weight: 0.9235 eval: -0.3814 min: -0.6514 max: 2.5230 weight: 0.9183 eval: -0.3631 min: -0.6514 max: 2.5230 weight: 0.9212 eval: -0.3735 min: -0.6514 max: 2.5230 weight: 0.9052 eval: -0.3169 min: -0.6514 max: 2.5230 weight: 0.9247 eval: -0.3859 min: -0.6514 max: 2.5230 weight: 0.8804 eval: -0.2296 min: -0.6514 max: 2.5230 weight: 0.9722 eval: -0.5533 min: -0.6514 max: 2.5230 Adding 11417 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -549.2175, CN propb: -549.2175 weights: 0.4221 constraints: 831 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 831 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 831 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 10586 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 10586 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 11417 # command: