# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0289/ # command:# Making conformation for sequence T0289 numbered 1 through 312 Created new target T0289 from T0289.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0289/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0289//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0289/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0289//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0289/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0289/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0289/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yw4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yw4A expands to /projects/compbio/data/pdb/1yw4.pdb.gz 1yw4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0289 read from 1yw4A/merged-good-all-a2m # 1yw4A read from 1yw4A/merged-good-all-a2m # adding 1yw4A to template set # found chain 1yw4A in template set Warning: unaligning (T0289)N132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yw4A)R170 Warning: unaligning (T0289)F261 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yw4A)A301 Warning: unaligning (T0289)P270 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yw4A)A301 T0289 8 :EPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHRA 1yw4A 44 :RGADSVLLSCGVHGNETAPIEVVDGMLTDIAAGQLA # choosing archetypes in rotamer library T0289 44 :GLEVKPFITNPRAVEKCTRYIDCDLNRVFDLENLSKEMS 1yw4A 81 :NCRLLVMFANLDAIRQGVRYGNYDMNRLFNGAHARHPEL T0289 87 :YEVRRAQEINHLF 1yw4A 120 :PESVRAAELETLA T0289 100 :GPKNSD 1yw4A 135 :FFAGAR T0289 107 :AYDVVFDLHNT 1yw4A 141 :ARKLHYDLHTA T0289 118 :TSNMGCTLILEDSR 1yw4A 153 :RGSVFEKFAIYPFL T0289 133 :DFLIQMFHYIK 1yw4A 171 :THKREQLAWLQ T0289 146 :MAPLPCSVYL 1yw4A 182 :RCGIEAVLLH T0289 156 :IEHPSLKYATTRSIAKYPVGIEVGPQ 1yw4A 193 :QPANTFSYFTSQYCEADAFTLELGKA T0289 182 :PHGVLRADILDQMRRMLKHALD 1yw4A 220 :PFGQNDLSRFSGIDGALRGLLS T0289 209 :NEGKEFPPC 1yw4A 242 :NPQANVPDL T0289 218 :AIDVYKIMEKVDYP 1yw4A 254 :KLPLFRAKYDLVKH T0289 242 :IHP 1yw4A 275 :LAD T0289 247 :QDQDWKPLHPGDPV 1yw4A 278 :SVENFTLLPDGMLI T0289 271 :LGGDCTVYP 1yw4A 302 :TGGEERILF Number of specific fragments extracted= 15 number of extra gaps= 0 total=15 Number of alignments=1 # 1yw4A read from 1yw4A/merged-good-all-a2m # found chain 1yw4A in template set Warning: unaligning (T0289)N132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yw4A)R170 Warning: unaligning (T0289)S235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yw4A)F271 Warning: unaligning (T0289)V238 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yw4A)F271 Warning: unaligning (T0289)F261 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yw4A)A301 Warning: unaligning (T0289)P270 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yw4A)A301 T0289 8 :EPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1yw4A 44 :RGADSVLLSCGVHGNETAPIEVVDGMLTDIAAGQ T0289 42 :RAGLEVKPFITNPRAVEKCTRYIDCDLNRVFDLENLSKEMS 1yw4A 79 :ALNCRLLVMFANLDAIRQGVRYGNYDMNRLFNGAHARHPEL T0289 87 :YEVRRAQEINHLFGPKNSD 1yw4A 120 :PESVRAAELETLAAEFFAG T0289 106 :DAYDVVFDLHNT 1yw4A 140 :RARKLHYDLHTA T0289 118 :TSNMGCTLILED 1yw4A 153 :RGSVFEKFAIYP T0289 133 :DFLIQMFHYIKTC 1yw4A 171 :THKREQLAWLQRC T0289 148 :PLPCSVYLIEHP 1yw4A 184 :GIEAVLLHTQPA T0289 160 :SLKYATTRSIAKYPVGIEVGPQ 1yw4A 197 :TFSYFTSQYCEADAFTLELGKA T0289 182 :PHGVLRADILDQMRRMLKHALDFI 1yw4A 220 :PFGQNDLSRFSGIDGALRGLLSNP T0289 209 :NEG 1yw4A 244 :QAN T0289 212 :KEFPPCAIDVYKIMEKVD 1yw4A 248 :PDLDEDKLPLFRAKYDLV T0289 233 :NE 1yw4A 266 :KH T0289 239 :A 1yw4A 272 :K T0289 243 :H 1yw4A 273 :L T0289 245 :NLQDQ 1yw4A 274 :NLADS T0289 250 :DWKPLHPGDPV 1yw4A 281 :NFTLLPDGMLI T0289 271 :LGGDC 1yw4A 302 :TGGEE T0289 278 :YPVFVNEAAYYEKKEAFAKTTKL 1yw4A 307 :RILFPNPAVKPGLRAGIVVEPAR Number of specific fragments extracted= 18 number of extra gaps= 0 total=33 Number of alignments=2 # 1yw4A read from 1yw4A/merged-good-all-a2m # found chain 1yw4A in template set Warning: unaligning (T0289)R131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yw4A)R170 Warning: unaligning (T0289)D133 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yw4A)R170 Warning: unaligning (T0289)D237 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yw4A)F271 Warning: unaligning (T0289)A240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yw4A)F271 Warning: unaligning (T0289)F261 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yw4A)A301 Warning: unaligning (T0289)P270 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yw4A)A301 T0289 8 :EPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHR 1yw4A 44 :RGADSVLLSCGVHGNETAPIEVVDGMLTDIAAGQL T0289 43 :AGLEVKPFITNPRAVEKCTRYIDCDLNRVFDLENLSKEMSE 1yw4A 80 :LNCRLLVMFANLDAIRQGVRYGNYDMNRLFNGAHARHPELP T0289 85 :LPYEVRRAQEINHLFGPKN 1yw4A 121 :ESVRAAELETLAAEFFAGA T0289 106 :DAYDVVFDLHNTT 1yw4A 140 :RARKLHYDLHTAI T0289 119 :SNMGCTLILEDS 1yw4A 155 :SVFEKFAIYPFL T0289 134 :FLIQMFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGPQ 1yw4A 171 :THKREQLAWLQRCGIEAVLLHTQPANTFSYFTSQYCEADAFTLELGKA T0289 182 :PHGVLRADILDQMRRMLKHALD 1yw4A 220 :PFGQNDLSRFSGIDGALRGLLS T0289 209 :NEGKEFPPCA 1yw4A 242 :NPQANVPDLD T0289 219 :IDVYKIMEKVD 1yw4A 255 :LPLFRAKYDLV T0289 235 :SG 1yw4A 266 :KH T0289 241 :VIHPNLQDQDWKPLHPGDPV 1yw4A 272 :KLNLADSVENFTLLPDGMLI T0289 271 :LGGDCTVYPVFVNE 1yw4A 302 :TGGEERILFPNPAV Number of specific fragments extracted= 12 number of extra gaps= 0 total=45 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1z5rA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1z5rA expands to /projects/compbio/data/pdb/1z5r.pdb.gz 1z5rA:# T0289 read from 1z5rA/merged-good-all-a2m # 1z5rA read from 1z5rA/merged-good-all-a2m # adding 1z5rA to template set # found chain 1z5rA in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1z5rA)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1z5rA)Y198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1z5rA)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1z5rA)Y206 Warning: unaligning (T0289)P180 because of BadResidue code BAD_PEPTIDE at template residue (1z5rA)D273 T0289 3 :SCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1z5rA 52 :VGKPGPNKPAIFMDCGFHAREWISHAFCQWFVREAVLTY T0289 42 :RAGLEVKPF 1z5rA 100 :LNKLDFYVL T0289 51 :ITNPRAVEKC 1z5rA 110 :VLNIDGYIYT T0289 61 :T 1z5rA 129 :T T0289 66 :CDLNRVFDL 1z5rA 141 :TDPNRNFDA T0289 75 :ENLSKEMS 1z5rA 167 :GSAAESEK T0289 88 :EVR 1z5rA 175 :ETK T0289 91 :RAQEINHLF 1z5rA 179 :LADFIRNNL T0289 106 :DAYDVVFDLH 1z5rA 187A:SSIKAYLTIH T0289 118 :TSNMGC 1z5rA 199 :SQMILY T0289 126 :ILEDSRNDFLIQMFHYIKTCM 1z5rA 207 :SYDYKLPENNAELNNLAKAAV T0289 147 :APLPCSVYL 1z5rA 234 :YGTKYTYGP T0289 156 :IEHPSLKYATTRSIAKY 1z5rA 248 :YPAAGGSDDWAYDQGIK T0289 173 :PVGIEV 1z5rA 266 :SFTFEL T0289 181 :QP 1z5rA 274 :KG T0289 183 :HGVLRADILDQMRRMLKHALDFI 1z5rA 278 :GFILPESQIQATCEETMLAIKYV T0289 206 :QRFNEG 1z5rA 302 :NYVLGH Number of specific fragments extracted= 17 number of extra gaps= 3 total=62 Number of alignments=4 # 1z5rA read from 1z5rA/merged-good-all-a2m # found chain 1z5rA in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1z5rA)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1z5rA)Y198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1z5rA)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1z5rA)Y206 Warning: unaligning (T0289)G179 because of BadResidue code BAD_PEPTIDE in next template residue (1z5rA)D273 Warning: unaligning (T0289)P180 because of BadResidue code BAD_PEPTIDE at template residue (1z5rA)D273 T0289 4 :CVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1z5rA 53 :GKPGPNKPAIFMDCGFHAREWISHAFCQWFVREAVLTY T0289 42 :RAGLEVKPF 1z5rA 100 :LNKLDFYVL T0289 51 :ITNPRAVEKC 1z5rA 110 :VLNIDGYIYT T0289 61 :TRYI 1z5rA 126 :WRKT T0289 66 :C 1z5rA 140 :G T0289 67 :DLNRVFDLENLSKEMS 1z5rA 142 :DPNRNFDAGWCTTGAS T0289 83 :EDLPYEVRRAQEINHLFG 1z5rA 170 :AESEKETKALADFIRNNL T0289 106 :DAYDVVFDLH 1z5rA 187A:SSIKAYLTIH T0289 118 :TSNMGC 1z5rA 199 :SQMILY T0289 126 :ILEDSRNDFLI 1z5rA 207 :SYDYKLPENNA T0289 137 :QMFHYIKTCM 1z5rA 225 :AAVKELATLY T0289 148 :PLPCSVYL 1z5rA 235 :GTKYTYGP T0289 156 :IEHPSLKYATTRSIAK 1z5rA 248 :YPAAGGSDDWAYDQGI T0289 172 :YPVGIEV 1z5rA 265 :YSFTFEL T0289 181 :Q 1z5rA 274 :K T0289 182 :PHG 1z5rA 276 :RYG T0289 185 :VLRADILDQMRRMLKHALDFI 1z5rA 280 :ILPESQIQATCEETMLAIKYV T0289 206 :QRF 1z5rA 302 :NYV Number of specific fragments extracted= 18 number of extra gaps= 3 total=80 Number of alignments=5 # 1z5rA read from 1z5rA/merged-good-all-a2m # found chain 1z5rA in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1z5rA)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1z5rA)Y198 Warning: unaligning (T0289)E128 because of BadResidue code BAD_PEPTIDE in next template residue (1z5rA)Y206 Warning: unaligning (T0289)D129 because of BadResidue code BAD_PEPTIDE at template residue (1z5rA)Y206 Warning: unaligning (T0289)G179 because of BadResidue code BAD_PEPTIDE in next template residue (1z5rA)D273 Warning: unaligning (T0289)P180 because of BadResidue code BAD_PEPTIDE at template residue (1z5rA)D273 T0289 5 :VAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1z5rA 54 :KPGPNKPAIFMDCGFHAREWISHAFCQWFVREAVLTY T0289 44 :G 1z5rA 91 :G T0289 45 :LEVKPFITNPRAVEKCT 1z5rA 104 :DFYVLPVLNIDGYIYTW T0289 62 :RYI 1z5rA 124 :RMW T0289 65 :DCDLNRVFDLENLSKEMSED 1z5rA 140 :GTDPNRNFDAGWCTTGASTD T0289 91 :RAQEINHLFGPKN 1z5rA 174 :KETKALADFIRNN T0289 105 :DDAYDVVFDLH 1z5rA 187 :LSSIKAYLTIH T0289 118 :T 1z5rA 199 :S T0289 124 :TLIL 1z5rA 201 :MILY T0289 130 :SRND 1z5rA 207 :SYDY T0289 134 :FLIQMFHYIKTCMA 1z5rA 222 :LAKAAVKELATLYG T0289 149 :LPCS 1z5rA 236 :TKYT T0289 160 :SLKYATTRSIAKYPVGIEV 1z5rA 253 :GSDDWAYDQGIKYSFTFEL T0289 181 :Q 1z5rA 274 :K T0289 182 :PHGVLRADILDQMRRMLKHALDFIQRF 1z5rA 277 :YGFILPESQIQATCEETMLAIKYVTNY Number of specific fragments extracted= 15 number of extra gaps= 3 total=95 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yw6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0289/1yw6A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0289/1yw6A/merged-good-all-a2m.gz for input Trying 1yw6A/merged-good-all-a2m Error: Couldn't open file 1yw6A/merged-good-all-a2m or 1yw6A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2c1cA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2c1cA expands to /projects/compbio/data/pdb/2c1c.pdb.gz 2c1cA:# T0289 read from 2c1cA/merged-good-all-a2m # 2c1cA read from 2c1cA/merged-good-all-a2m # adding 2c1cA to template set # found chain 2c1cA in template set Warning: unaligning (T0289)N116 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c1cA)F198 Warning: unaligning (T0289)T117 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2c1cA)F198 Warning: unaligning (T0289)T124 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c1cA)W206 Warning: unaligning (T0289)L125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2c1cA)W206 T0289 6 :AEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 2c1cA 56B:EDENKPVIFIDGGIHAREWISPPSVTWAIHKLVEDV T0289 42 :RAGLEVKPF 2c1cA 100 :LEKFDWILL T0289 51 :ITNPRAVEKC 2c1cA 110 :VVNPDGYKYT T0289 65 :DCDLNRVFDL 2c1cA 140 :GADGNRNFDF T0289 75 :E 2c1cA 167 :G T0289 81 :MSEDLPYEVRRAQEINHLF 2c1cA 168 :TSAFSEVETRVVRDILHEH T0289 104 :SD 2c1cA 187 :LA T0289 107 :AYDVVFDLH 2c1cA 188A:RMALYLTMH T0289 118 :TSNMGC 2c1cA 199 :GSMILY T0289 126 :ILEDSRNDFLIQMFHYIKTCM 2c1cA 207 :GHDGSLSQNALGLHTVGVAMA T0289 147 :AP 2c1cA 236 :PN T0289 149 :LPCSVYL 2c1cA 236C:PPYTVGN T0289 156 :IEHPSLKYATTRSIAKY 2c1cA 248 :YYIAGSSEDYAHSIGVP T0289 173 :PVGIEVGPQPHG 2c1cA 266 :SYTYELPGLSSG T0289 185 :VLRADILDQMRRMLKHALDFI 2c1cA 280 :HLPPQYIEQVCRETWEGIVVG Number of specific fragments extracted= 15 number of extra gaps= 2 total=110 Number of alignments=7 # 2c1cA read from 2c1cA/merged-good-all-a2m # found chain 2c1cA in template set Warning: unaligning (T0289)N116 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c1cA)F198 Warning: unaligning (T0289)T117 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2c1cA)F198 Warning: unaligning (T0289)T124 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c1cA)W206 Warning: unaligning (T0289)L125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2c1cA)W206 T0289 7 :EEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 2c1cA 57 :DENKPVIFIDGGIHAREWISPPSVTWAIHKLVEDV T0289 42 :RAGLEVKPF 2c1cA 100 :LEKFDWILL T0289 51 :ITNPRAVEKC 2c1cA 110 :VVNPDGYKYT T0289 61 :TRYI 2c1cA 126 :WRKT T0289 65 :D 2c1cA 131 :S T0289 66 :C 2c1cA 140 :G T0289 67 :DLNRVFDLENLSKEMS 2c1cA 142 :DGNRNFDFVWNSIGTS T0289 83 :EDLPYEVRRAQEINHLFG 2c1cA 170 :AFSEVETRVVRDILHEHL T0289 106 :DAYDVVFDLH 2c1cA 188 :ARMALYLTMH T0289 118 :TSNMGC 2c1cA 199 :GSMILY T0289 126 :ILEDSRNDFLI 2c1cA 207 :GHDGSLSQNAL T0289 138 :MFHYIKTCMAPL 2c1cA 222 :VGVAMASVIQSN T0289 150 :PCSVYL 2c1cA 237 :PYTVGN T0289 156 :IEHPSLKYATTRSIAK 2c1cA 248 :YYIAGSSEDYAHSIGV T0289 172 :YPVGIEVGPQPHG 2c1cA 265 :LSYTYELPGLSSG T0289 185 :VLRADILDQMRRMLKHALDFI 2c1cA 280 :HLPPQYIEQVCRETWEGIVVG Number of specific fragments extracted= 16 number of extra gaps= 2 total=126 Number of alignments=8 # 2c1cA read from 2c1cA/merged-good-all-a2m # found chain 2c1cA in template set Warning: unaligning (T0289)N116 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c1cA)F198 Warning: unaligning (T0289)T117 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2c1cA)F198 Warning: unaligning (T0289)E128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c1cA)W206 Warning: unaligning (T0289)D129 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2c1cA)W206 T0289 8 :EPIKKIAIFGGTHGNE 2c1cA 58 :ENKPVIFIDGGIHARE T0289 24 :LTGVFLVTHWLKNGAEVHR 2c1cA 77 :PSVTWAIHKLVEDVTENDL T0289 43 :AGLEVKPF 2c1cA 101 :EKFDWILL T0289 51 :ITNPRAVEKCT 2c1cA 110 :VVNPDGYKYTF T0289 62 :RYI 2c1cA 124 :RFW T0289 65 :DCDLNRVFDLENL 2c1cA 140 :GADGNRNFDFVWN T0289 78 :SKEMSED 2c1cA 157 :SNSPCSD T0289 87 :YEVRRAQEINHLF 2c1cA 174 :VETRVVRDILHEH T0289 105 :DDAYDVVFDLH 2c1cA 187 :LARMALYLTMH T0289 118 :T 2c1cA 199 :G T0289 123 :CTLIL 2c1cA 200 :SMILY T0289 130 :SRNDFL 2c1cA 207 :GHDGSL T0289 136 :IQMFHYIKTCMAPL 2c1cA 224 :VAMASVIQSNALPN T0289 150 :PCS 2c1cA 237 :PYT T0289 170 :AKYPVGIEVGPQPHG 2c1cA 263 :VPLSYTYELPGLSSG T0289 185 :VLRADILDQMRRMLKHALDFIQRF 2c1cA 284 :QYIEQVCRETWEGIVVGARRAGDL Number of specific fragments extracted= 16 number of extra gaps= 2 total=142 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kwmA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kwmA expands to /projects/compbio/data/pdb/1kwm.pdb.gz 1kwmA:Skipped atom 268, because occupancy 0.47 <= existing 0.530 in 1kwmA Skipped atom 270, because occupancy 0.470 <= existing 0.530 in 1kwmA Skipped atom 272, because occupancy 0.470 <= existing 0.530 in 1kwmA WARNING: atom 790 has residue number 4 < previous residue 95A in 1kwmA Skipped atom 1086, because occupancy 0.330 <= existing 0.670 in 1kwmA Skipped atom 1088, because occupancy 0.330 <= existing 0.670 in 1kwmA Skipped atom 1090, because occupancy 0.330 <= existing 0.670 in 1kwmA Skipped atom 1311, because occupancy 0.470 <= existing 0.520 in 1kwmA Skipped atom 1313, because occupancy 0.470 <= existing 0.520 in 1kwmA Skipped atom 1315, because occupancy 0.470 <= existing 0.520 in 1kwmA Skipped atom 1317, because occupancy 0.470 <= existing 0.520 in 1kwmA Skipped atom 1319, because occupancy 0.470 <= existing 0.520 in 1kwmA Skipped atom 1321, because occupancy 0.470 <= existing 0.520 in 1kwmA Skipped atom 1961, because occupancy 0.430 <= existing 0.570 in 1kwmA Skipped atom 1963, because occupancy 0.430 <= existing 0.570 in 1kwmA Skipped atom 1965, because occupancy 0.430 <= existing 0.570 in 1kwmA Skipped atom 1967, because occupancy 0.430 <= existing 0.570 in 1kwmA Skipped atom 1969, because occupancy 0.430 <= existing 0.570 in 1kwmA Skipped atom 1971, because occupancy 0.430 <= existing 0.570 in 1kwmA Skipped atom 1973, because occupancy 0.430 <= existing 0.570 in 1kwmA Skipped atom 2225, because occupancy 0.350 <= existing 0.650 in 1kwmA Skipped atom 2227, because occupancy 0.350 <= existing 0.650 in 1kwmA Skipped atom 2229, because occupancy 0.350 <= existing 0.650 in 1kwmA Skipped atom 2231, because occupancy 0.350 <= existing 0.650 in 1kwmA Skipped atom 2315, because occupancy 0.340 <= existing 0.660 in 1kwmA Skipped atom 2317, because occupancy 0.340 <= existing 0.660 in 1kwmA # T0289 read from 1kwmA/merged-good-all-a2m # 1kwmA read from 1kwmA/merged-good-all-a2m # adding 1kwmA to template set # found chain 1kwmA in template set Warning: unaligning (T0289)L45 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1kwmA)D104 Warning: unaligning (T0289)E46 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1kwmA)D104 Warning: unaligning (T0289)L68 because of BadResidue code BAD_PEPTIDE in next template residue (1kwmA)N144 Warning: unaligning (T0289)N69 because of BadResidue code BAD_PEPTIDE at template residue (1kwmA)N144 Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1kwmA)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1kwmA)Y198 Warning: unaligning (T0289)T118 because of BadResidue code BAD_PEPTIDE at template residue (1kwmA)S199 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1kwmA)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1kwmA)Y206 T0289 3 :SCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1kwmA 52 :VGKAGQNKPAIFMDCGFHAREWISPAFCQWFVREAVRTY T0289 42 :RAG 1kwmA 100 :LNK T0289 47 :VKPF 1kwmA 105 :FYVL T0289 51 :ITNPRAVEKC 1kwmA 110 :VLNIDGYIYT T0289 64 :I 1kwmA 126 :W T0289 65 :DCD 1kwmA 140 :GTD T0289 70 :RVFDL 1kwmA 145 :RNFDA T0289 75 :ENLSKEMS 1kwmA 167 :GPAAESEK T0289 88 :EVR 1kwmA 175 :ETK T0289 91 :RAQEINHLF 1kwmA 179 :LADFIRNKL T0289 106 :DAYDVVFDLH 1kwmA 187A:SSIKAYLTIH T0289 119 :SNMGC 1kwmA 200 :QMMIY T0289 126 :ILEDSRNDFLIQMFHYIKTCM 1kwmA 207 :SYAYKLGENNAELNALAKATV T0289 147 :APLPCSVYL 1kwmA 234 :HGTKYTYGP T0289 156 :IEHPSLKYATTRSIAKY 1kwmA 248 :YPAAGGSDDWAYDQGIR T0289 173 :PVGIEV 1kwmA 266 :SFTFEL T0289 179 :G 1kwmA 275 :G T0289 182 :PHG 1kwmA 276 :RYG T0289 186 :LRADILDQMRRMLKHALDFI 1kwmA 281 :LPESQIRATCEETFLAIKYV T0289 206 :QRFNE 1kwmA 302 :SYVLE Number of specific fragments extracted= 20 number of extra gaps= 4 total=162 Number of alignments=10 # 1kwmA read from 1kwmA/merged-good-all-a2m # found chain 1kwmA in template set Warning: unaligning (T0289)L45 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1kwmA)D104 Warning: unaligning (T0289)E46 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1kwmA)D104 Warning: unaligning (T0289)L68 because of BadResidue code BAD_PEPTIDE in next template residue (1kwmA)N144 Warning: unaligning (T0289)N69 because of BadResidue code BAD_PEPTIDE at template residue (1kwmA)N144 Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1kwmA)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1kwmA)Y198 Warning: unaligning (T0289)T118 because of BadResidue code BAD_PEPTIDE at template residue (1kwmA)S199 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1kwmA)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1kwmA)Y206 Warning: unaligning (T0289)G179 because of BadResidue code BAD_PEPTIDE in next template residue (1kwmA)D273 Warning: unaligning (T0289)P180 because of BadResidue code BAD_PEPTIDE at template residue (1kwmA)D273 T0289 4 :CVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1kwmA 53 :GKAGQNKPAIFMDCGFHAREWISPAFCQWFVREAVRTY T0289 42 :RAG 1kwmA 100 :LNK T0289 47 :VKPF 1kwmA 105 :FYVL T0289 51 :ITNPRAVEKC 1kwmA 110 :VLNIDGYIYT T0289 61 :TRYI 1kwmA 126 :WRKT T0289 66 :C 1kwmA 140 :G T0289 67 :D 1kwmA 142 :D T0289 70 :RVFDLENLSKEMS 1kwmA 145 :RNFDAGWCEIGAS T0289 83 :EDLPYEVRRAQEINHLFG 1kwmA 170 :AESEKETKALADFIRNKL T0289 106 :DAYDVVFDLH 1kwmA 187A:SSIKAYLTIH T0289 119 :SNMGC 1kwmA 200 :QMMIY T0289 126 :ILEDSRNDFLI 1kwmA 207 :SYAYKLGENNA T0289 137 :QMFHYIKTCMA 1kwmA 221 :ALAKATVKELA T0289 148 :PLPCSVYL 1kwmA 235 :GTKYTYGP T0289 156 :IEHPSLKYATTRSIAK 1kwmA 248 :YPAAGGSDDWAYDQGI T0289 172 :YPVGIEV 1kwmA 265 :YSFTFEL T0289 181 :Q 1kwmA 274 :T T0289 182 :PHG 1kwmA 276 :RYG T0289 185 :VLRADILDQMRRMLKHALDFI 1kwmA 280 :LLPESQIRATCEETFLAIKYV T0289 206 :QR 1kwmA 302 :SY Number of specific fragments extracted= 20 number of extra gaps= 5 total=182 Number of alignments=11 # 1kwmA read from 1kwmA/merged-good-all-a2m # found chain 1kwmA in template set Warning: unaligning (T0289)L45 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1kwmA)D104 Warning: unaligning (T0289)E46 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1kwmA)D104 Warning: unaligning (T0289)L68 because of BadResidue code BAD_PEPTIDE in next template residue (1kwmA)N144 Warning: unaligning (T0289)N69 because of BadResidue code BAD_PEPTIDE at template residue (1kwmA)N144 Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1kwmA)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1kwmA)Y198 Warning: unaligning (T0289)T118 because of BadResidue code BAD_PEPTIDE at template residue (1kwmA)S199 Warning: unaligning (T0289)E128 because of BadResidue code BAD_PEPTIDE in next template residue (1kwmA)Y206 Warning: unaligning (T0289)D129 because of BadResidue code BAD_PEPTIDE at template residue (1kwmA)Y206 Warning: unaligning (T0289)G179 because of BadResidue code BAD_PEPTIDE in next template residue (1kwmA)D273 Warning: unaligning (T0289)P180 because of BadResidue code BAD_PEPTIDE at template residue (1kwmA)D273 T0289 5 :VAEEPIKKIAIFGGTHGNELTGV 1kwmA 54 :KAGQNKPAIFMDCGFHAREWISP T0289 28 :FLVTHWLKNGAEVHR 1kwmA 81 :WFVREAVRTYGREIQ T0289 43 :AG 1kwmA 101 :NK T0289 47 :VKPFITNPRAVEKCT 1kwmA 106 :YVLPVLNIDGYIYTW T0289 62 :RYI 1kwmA 124 :RFW T0289 65 :DCD 1kwmA 140 :GTD T0289 70 :RVFDLENL 1kwmA 145 :RNFDAGWC T0289 78 :SKE 1kwmA 158 :RNP T0289 81 :MSEDL 1kwmA 169 :AAESE T0289 91 :RAQEINHLFGPKN 1kwmA 174 :KETKALADFIRNK T0289 105 :DDAYDVVFDLH 1kwmA 187 :LSSIKAYLTIH T0289 124 :TLIL 1kwmA 201 :MMIY T0289 130 :S 1kwmA 207 :S T0289 131 :RNDFLIQMFHYIKTCM 1kwmA 215 :NNAELNALAKATVKEL T0289 147 :APLPCS 1kwmA 234 :HGTKYT T0289 164 :ATTRSIAKYPVGIEV 1kwmA 257 :WAYDQGIRYSFTFEL T0289 181 :Q 1kwmA 274 :T T0289 182 :PHGVL 1kwmA 276 :RYGFL T0289 188 :ADILDQMRRMLKHALDFI 1kwmA 287 :RATCEETFLAIKYVASYV Number of specific fragments extracted= 19 number of extra gaps= 5 total=201 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1h8lA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1h8lA expands to /projects/compbio/data/pdb/1h8l.pdb.gz 1h8lA:# T0289 read from 1h8lA/merged-good-all-a2m # 1h8lA read from 1h8lA/merged-good-all-a2m # adding 1h8lA to template set # found chain 1h8lA in template set Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1h8lA)F191 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1h8lA)F191 T0289 3 :SCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1h8lA 57 :PGIHEAGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNF T0289 42 :RAGLEVKPF 1h8lA 105 :VQSTRIHIM T0289 51 :ITNPRAVEKC 1h8lA 115 :SMNPDGYEKS T0289 61 :TRYI 1h8lA 134 :GRNN T0289 65 :DCDLNRVF 1h8lA 140 :NYDLNRNF T0289 75 :ENLSKEMSEDLPYEV 1h8lA 148 :PDQFFQVTDPPQPET T0289 93 :QEINHLF 1h8lA 163 :LAVMSWL T0289 104 :SDDAYDVVFDLHNTTSNMGC 1h8lA 170 :KTYPFVLSANLHGGSLVVNY T0289 126 :ILE 1h8lA 192 :DDD T0289 129 :DSRNDFLIQMFHYIKTCM 1h8lA 200 :IYSKSPDDAVFQQLALSY T0289 147 :APLPCSV 1h8lA 239 :FPHGITN T0289 156 :IEHPSLKYATTRSIAKYPVGIEVGPQPHGVLR 1h8lA 251 :NVPGGMQDWNYLNTNCFEVTIELGCVKYPKAE T0289 188 :ADILDQMRRMLKHALDFIQRF 1h8lA 285 :PKYWEQNRRSLLQFIKQVHRG T0289 211 :GKEFPPCAIDVYKIME 1h8lA 313 :ATDGRGILNATISVAD T0289 227 :KVDYPRNESGDVAAVIHP 1h8lA 330 :NHPVTTYKDGDYWRLLVQ T0289 252 :KPLH 1h8lA 348 :GTYK T0289 260 :VFVSLDGK 1h8lA 352 :VTASARGY T0289 268 :VIPLGGDCTVYPVF 1h8lA 365 :TVEVDSKGGVQVNF Number of specific fragments extracted= 18 number of extra gaps= 1 total=219 Number of alignments=13 # 1h8lA read from 1h8lA/merged-good-all-a2m # found chain 1h8lA in template set Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1h8lA)F191 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1h8lA)F191 T0289 5 :VAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1h8lA 59 :IHEAGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNF T0289 42 :RAGLEVKPF 1h8lA 105 :VQSTRIHIM T0289 51 :ITNPRAVEKC 1h8lA 115 :SMNPDGYEKS T0289 61 :TRYI 1h8lA 134 :GRNN T0289 65 :DC 1h8lA 139 :NN T0289 67 :DLNRVFDLENLSKEMS 1h8lA 142 :DLNRNFPDQFFQVTDP T0289 87 :YEVRRAQEINHL 1h8lA 160 :PETLAVMSWLKT T0289 106 :DAYDVVFDLHNTTSNMGC 1h8lA 172 :YPFVLSANLHGGSLVVNY T0289 126 :ILED 1h8lA 192 :DDDE T0289 130 :SRNDFLIQMFHYIKTCMAPL 1h8lA 201 :YSKSPDDAVFQQLALSYSKE T0289 150 :PCSVY 1h8lA 241 :HGITN T0289 155 :LIEHPSLKYATTRSIAKYPVGIEVGPQ 1h8lA 250 :YNVPGGMQDWNYLNTNCFEVTIELGCV T0289 184 :GVLR 1h8lA 277 :KYPK T0289 188 :ADILDQMRRMLKHALDFIQR 1h8lA 285 :PKYWEQNRRSLLQFIKQVHR T0289 219 :I 1h8lA 305 :G T0289 238 :VAAVIHPNLQDQDW 1h8lA 306 :IWGFVLDATDGRGI T0289 256 :PGD 1h8lA 320 :LNA T0289 261 :FVSLDGK 1h8lA 323 :TISVADI T0289 268 :VIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLTLNAKSIRST 1h8lA 334 :TTYKDGDYWRLLVQGTYKVTASARGYDPVTKTVEVDSKGGVQV Number of specific fragments extracted= 19 number of extra gaps= 1 total=238 Number of alignments=14 # 1h8lA read from 1h8lA/merged-good-all-a2m # found chain 1h8lA in template set Warning: unaligning (T0289)D129 because of BadResidue code BAD_PEPTIDE in next template residue (1h8lA)F191 Warning: unaligning (T0289)S130 because of BadResidue code BAD_PEPTIDE at template residue (1h8lA)F191 T0289 6 :AEEPIKKIAIFGGTHGNELTGVFLVTHWL 1h8lA 60 :HEAGEPEFKYIGNMHGNEVVGRELLLNLI T0289 35 :KNGAEVHR 1h8lA 96 :GTDPEVTD T0289 43 :AGLEVKPFITNPRAVEK 1h8lA 107 :STRIHIMPSMNPDGYEK T0289 65 :DCDLNRVFDLE 1h8lA 140 :NYDLNRNFPDQ T0289 79 :KEMSEDLPYEVRRAQEINHLF 1h8lA 152 :FQVTDPPQPETLAVMSWLKTY T0289 107 :AYDVVFDLHNT 1h8lA 173 :PFVLSANLHGG T0289 123 :CTLILE 1h8lA 184 :SLVVNY T0289 131 :R 1h8lA 192 :D T0289 132 :ND 1h8lA 194 :DE T0289 134 :FLIQMFHYIKTC 1h8lA 205 :PDDAVFQQLALS T0289 164 :ATTRSIAKYPVGIEVGPQ 1h8lA 259 :WNYLNTNCFEVTIELGCV T0289 182 :PHGVLRADILDQMRRMLKHALDFIQRF 1h8lA 279 :PKAEELPKYWEQNRRSLLQFIKQVHRG T0289 209 :NEGKEFPPCAIDVYKIMEKVD 1h8lA 314 :TDGRGILNATISVADINHPVT T0289 233 :NESGDVAAVIHPNL 1h8lA 335 :TYKDGDYWRLLVQG T0289 253 :PL 1h8lA 349 :TY T0289 259 :PVFVSLDG 1h8lA 351 :KVTASARG T0289 267 :KVIPLGGDCTVYPVF 1h8lA 364 :KTVEVDSKGGVQVNF Number of specific fragments extracted= 17 number of extra gaps= 1 total=255 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qmuA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1qmuA expands to /projects/compbio/data/pdb/1qmu.pdb.gz 1qmuA:# T0289 read from 1qmuA/merged-good-all-a2m # 1qmuA read from 1qmuA/merged-good-all-a2m # adding 1qmuA to template set # found chain 1qmuA in template set Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1qmuA)F191 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1qmuA)F191 T0289 4 :CVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1qmuA 58 :GIHEAGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNF T0289 42 :RAGLEVKPF 1qmuA 105 :VQSTRIHIM T0289 51 :ITNPRAVEKC 1qmuA 115 :SMNPDGYEKS T0289 61 :TRYI 1qmuA 134 :GRNN T0289 65 :DCDLNRVF 1qmuA 140 :NYDLNRNF T0289 75 :ENLSKEMSEDLPYEV 1qmuA 148 :PDQFFQVTDPPQPET T0289 93 :QEINHLF 1qmuA 163 :LAVMSWL T0289 104 :SDDAYDVVFDLHNTTSNMGC 1qmuA 170 :KTYPFVLSANLHGGSLVVNY T0289 126 :ILE 1qmuA 192 :DDD T0289 129 :DSRNDFLIQMFHYIKTCM 1qmuA 200 :IYSKSPDDAVFQQLALSY T0289 147 :APLPCSV 1qmuA 239 :FPHGITN T0289 156 :IEHPSLKYATTRSIAKYPVGIEVGPQPHGVLR 1qmuA 251 :NVPGGMQDWNYLNTNCFEVTIELGCVKYPKAE T0289 188 :ADILDQMRRMLKHALDFIQRF 1qmuA 285 :PKYWEQNRRSLLQFIKQVHRG T0289 209 :NEGKEF 1qmuA 314 :TDGRGI T0289 218 :AIDVYKIME 1qmuA 320 :LNATISVAD T0289 227 :KVDYPRNESGDVAAVIHP 1qmuA 330 :NHPVTTYKDGDYWRLLVQ T0289 252 :KPLH 1qmuA 348 :GTYK T0289 260 :VFVSLDGK 1qmuA 352 :VTASARGY T0289 268 :VIPLGGDCTVYPVF 1qmuA 365 :TVEVDSKGGVQVNF Number of specific fragments extracted= 19 number of extra gaps= 1 total=274 Number of alignments=16 # 1qmuA read from 1qmuA/merged-good-all-a2m # found chain 1qmuA in template set Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1qmuA)F191 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1qmuA)F191 T0289 5 :VAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1qmuA 59 :IHEAGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNF T0289 42 :RAGLEVKPF 1qmuA 105 :VQSTRIHIM T0289 51 :ITNPRAVEKC 1qmuA 115 :SMNPDGYEKS T0289 61 :TRYI 1qmuA 134 :GRNN T0289 65 :DC 1qmuA 139 :NN T0289 67 :DLNRVFDLENLSKEMS 1qmuA 142 :DLNRNFPDQFFQVTDP T0289 87 :YEVRRAQEINHL 1qmuA 160 :PETLAVMSWLKT T0289 106 :DAYDVVFDLHNTTSNMGC 1qmuA 172 :YPFVLSANLHGGSLVVNY T0289 126 :ILED 1qmuA 192 :DDDE T0289 130 :SRNDFLIQMFHYIKTCMAPL 1qmuA 201 :YSKSPDDAVFQQLALSYSKE T0289 160 :SLKYATTRSIAKYPVGIEVGPQ 1qmuA 255 :GMQDWNYLNTNCFEVTIELGCV T0289 185 :VLR 1qmuA 278 :YPK T0289 188 :ADILDQMRRMLKHALDFIQ 1qmuA 285 :PKYWEQNRRSLLQFIKQVH T0289 218 :AIDVYKIMEKVDY 1qmuA 304 :RGIWGFVLDATDG T0289 232 :RNESG 1qmuA 317 :RGILN T0289 238 :VAAVIHP 1qmuA 322 :ATISVAD T0289 263 :SLDGKVIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLTLNAKSIRST 1qmuA 329 :INHPVTTYKDGDYWRLLVQGTYKVTASARGYDPVTKTVEVDSKGGVQV Number of specific fragments extracted= 17 number of extra gaps= 1 total=291 Number of alignments=17 # 1qmuA read from 1qmuA/merged-good-all-a2m # found chain 1qmuA in template set Warning: unaligning (T0289)E128 because of BadResidue code BAD_PEPTIDE in next template residue (1qmuA)F191 Warning: unaligning (T0289)D129 because of BadResidue code BAD_PEPTIDE at template residue (1qmuA)F191 T0289 6 :AEEPIKKIAIFGGTHGNELTGVFLVTHWLKNG 1qmuA 60 :HEAGEPEFKYIGNMHGNEVVGRELLLNLIEYL T0289 38 :AEVHR 1qmuA 99 :PEVTD T0289 43 :AGLEV 1qmuA 106 :QSTRI T0289 48 :KPFITNPRAVEK 1qmuA 112 :IMPSMNPDGYEK T0289 65 :DCDLNRVFDLEN 1qmuA 140 :NYDLNRNFPDQF T0289 79 :KEMSEDLPYEVRRAQEINHLF 1qmuA 152 :FQVTDPPQPETLAVMSWLKTY T0289 107 :AYDVVFDLHNTT 1qmuA 173 :PFVLSANLHGGS T0289 123 :CTLIL 1qmuA 185 :LVVNY T0289 130 :SRND 1qmuA 192 :DDDE T0289 134 :FLIQMFHYIKTC 1qmuA 205 :PDDAVFQQLALS T0289 165 :TTRSIAKYPVGIEVGPQ 1qmuA 260 :NYLNTNCFEVTIELGCV T0289 182 :PHGVLRADILDQMRRMLKHALDFIQRF 1qmuA 279 :PKAEELPKYWEQNRRSLLQFIKQVHRG T0289 209 :NEGKEFPPCAIDVYKIMEKVD 1qmuA 314 :TDGRGILNATISVADINHPVT T0289 233 :NESGDVAAVIHPN 1qmuA 335 :TYKDGDYWRLLVQ T0289 258 :DPVFVSLDG 1qmuA 350 :YKVTASARG T0289 267 :KVIPLGGDCTVYPVF 1qmuA 364 :KTVEVDSKGGVQVNF Number of specific fragments extracted= 16 number of extra gaps= 1 total=307 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pca/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0289/1pca/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0289/1pca/merged-good-all-a2m.gz for input Trying 1pca/merged-good-all-a2m Error: Couldn't open file 1pca/merged-good-all-a2m or 1pca/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bo9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bo9A expands to /projects/compbio/data/pdb/2bo9.pdb.gz 2bo9A:Skipped atom 26, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 28, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 30, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 32, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 350, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 352, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 354, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 799, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 839, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 841, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 843, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 845, because occupancy 0.500 <= existing 0.500 in 2bo9A Skipped atom 1939, because occupancy 0.500 <= existing 0.500 in 2bo9A # T0289 read from 2bo9A/merged-good-all-a2m # 2bo9A read from 2bo9A/merged-good-all-a2m # adding 2bo9A to template set # found chain 2bo9A in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (2bo9A)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (2bo9A)Y198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (2bo9A)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (2bo9A)Y206 Warning: unaligning (T0289)K212 because last residue in template chain is (2bo9A)L308 T0289 5 :VAEE 2bo9A 54 :TGKG T0289 9 :PIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 2bo9A 58 :RRPAVWLNAGIHSREWISQATAIWTARKIVSDY T0289 42 :RAGLEVKPF 2bo9A 100 :LEKMDIFLL T0289 51 :ITNPRAVEKC 2bo9A 110 :VANPDGYVYT T0289 65 :DCDLNRVFDL 2bo9A 140 :GADPNRNWNA T0289 75 :ENLSKE 2bo9A 168 :PHANSE T0289 87 :YEVRRAQEINHLF 2bo9A 174 :VEVKSVVDFIQKH T0289 106 :DAYDVVFDLH 2bo9A 187 :GNFKGFIDLH T0289 118 :TSNMGC 2bo9A 199 :SQLLMY T0289 126 :ILEDSRNDFLIQMFHYIKTCM 2bo9A 207 :GYSVKKAPDAEELDKVARLAA T0289 147 :APLPCSVY 2bo9A 236 :TEYQVGPT T0289 156 :IEHPSLKYATTRSIAKY 2bo9A 248 :YPASGSSIDWAYDNGIK T0289 173 :PVGIEV 2bo9A 266 :AFTFEL T0289 179 :GPQ 2bo9A 275 :GTY T0289 183 :HGVLRADILDQMRRMLKHALDFI 2bo9A 278 :GFLLPANQIIPTAEETWLGLKTI T0289 206 :QRFNEG 2bo9A 302 :EHVRDN Number of specific fragments extracted= 16 number of extra gaps= 2 total=323 Number of alignments=19 # 2bo9A read from 2bo9A/merged-good-all-a2m # found chain 2bo9A in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (2bo9A)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (2bo9A)Y198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (2bo9A)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (2bo9A)Y206 T0289 6 :AEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 2bo9A 55A:KGVRRPAVWLNAGIHSREWISQATAIWTARKIVSDY T0289 42 :RAGLEVKPF 2bo9A 100 :LEKMDIFLL T0289 51 :ITNPRAVEKC 2bo9A 110 :VANPDGYVYT T0289 61 :TRYI 2bo9A 126 :WRKT T0289 66 :C 2bo9A 140 :G T0289 67 :DLNRVFDLENLSKEMS 2bo9A 142 :DPNRNWNASFAGKGAS T0289 83 :EDLPYEVRRAQEINHLF 2bo9A 170 :ANSEVEVKSVVDFIQKH T0289 106 :DAYDVVFDLH 2bo9A 187 :GNFKGFIDLH T0289 118 :TSNMGC 2bo9A 199 :SQLLMY T0289 126 :ILEDSRNDFLIQM 2bo9A 207 :GYSVKKAPDAEEL T0289 139 :FHYIKTCMA 2bo9A 223 :ARLAAKALA T0289 148 :PLPCSVYL 2bo9A 235 :GTEYQVGP T0289 156 :IEHPSLKYATTRSIAK 2bo9A 248 :YPASGSSIDWAYDNGI T0289 172 :YPVGIEV 2bo9A 265 :FAFTFEL T0289 179 :GPQPH 2bo9A 275 :GTYGF T0289 185 :VLR 2bo9A 280 :LLP T0289 188 :ADILDQMRRMLKHALDFIQ 2bo9A 287 :IPTAEETWLGLKTIMEHVR Number of specific fragments extracted= 17 number of extra gaps= 2 total=340 Number of alignments=20 # 2bo9A read from 2bo9A/merged-good-all-a2m # found chain 2bo9A in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (2bo9A)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (2bo9A)Y198 Warning: unaligning (T0289)E128 because of BadResidue code BAD_PEPTIDE in next template residue (2bo9A)Y206 Warning: unaligning (T0289)D129 because of BadResidue code BAD_PEPTIDE at template residue (2bo9A)Y206 Warning: unaligning (T0289)G179 because of BadResidue code BAD_PEPTIDE in next template residue (2bo9A)D273 Warning: unaligning (T0289)P180 because of BadResidue code BAD_PEPTIDE at template residue (2bo9A)D273 T0289 5 :VAEEPIKKIAIFGGTHGNEL 2bo9A 55 :GKGVRRPAVWLNAGIHSREW T0289 25 :TGVFLVTHWLKNGAEVHR 2bo9A 78 :TAIWTARKIVSDYQRDPA T0289 43 :AGLE 2bo9A 101 :EKMD T0289 47 :VKPFITNPRAVEKCT 2bo9A 106 :FLLPVANPDGYVYTQ T0289 62 :RYI 2bo9A 124 :RLW T0289 65 :DCDLNRVFDLENLSKEMSED 2bo9A 140 :GADPNRNWNASFAGKGASDN T0289 85 :LPYEVRRAQEINHLF 2bo9A 172 :SEVEVKSVVDFIQKH T0289 106 :DAYDVVFDLH 2bo9A 187 :GNFKGFIDLH T0289 118 :T 2bo9A 199 :S T0289 124 :TLIL 2bo9A 201 :LLMY T0289 130 :SRND 2bo9A 207 :GYSV T0289 134 :FLIQMFHYIKTCMA 2bo9A 222 :VARLAAKALASVSG T0289 149 :LPCS 2bo9A 236 :TEYQ T0289 165 :TTRSIAKYPVGIEV 2bo9A 258 :AYDNGIKFAFTFEL T0289 181 :Q 2bo9A 274 :T T0289 182 :PHGVLR 2bo9A 277 :YGFLLP T0289 188 :ADILDQMRRMLKHALDFI 2bo9A 287 :IPTAEETWLGLKTIMEHV Number of specific fragments extracted= 17 number of extra gaps= 3 total=357 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2g9dA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0289/2g9dA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0289/2g9dA/merged-good-all-a2m.gz for input Trying 2g9dA/merged-good-all-a2m Error: Couldn't open file 2g9dA/merged-good-all-a2m or 2g9dA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cbx/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0289/1cbx/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0289/1cbx/merged-good-all-a2m.gz for input Trying 1cbx/merged-good-all-a2m Error: Couldn't open file 1cbx/merged-good-all-a2m or 1cbx/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2boaA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0289/2boaA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0289/2boaA/merged-good-all-a2m.gz for input Trying 2boaA/merged-good-all-a2m Error: Couldn't open file 2boaA/merged-good-all-a2m or 2boaA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bavA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bavA expands to /projects/compbio/data/pdb/1bav.pdb.gz 1bavA:# T0289 read from 1bavA/merged-good-all-a2m # 1bavA read from 1bavA/merged-good-all-a2m # adding 1bavA to template set # found chain 1bavA in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1bavA)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1bavA)Y198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1bavA)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1bavA)Y206 T0289 4 :CVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1bavA 53 :STGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTENY T0289 42 :RAGLEVKPF 1bavA 100 :LDSMDIFLE T0289 51 :ITNPRAVEKC 1bavA 110 :VTNPNGFAFT T0289 64 :I 1bavA 129 :T T0289 65 :DCDLNRVFDL 1bavA 140 :GVDANRNWDA T0289 75 :ENLSKEMS 1bavA 167 :GKYANSEV T0289 88 :EV 1bavA 175 :EV T0289 93 :QEINHLF 1bavA 177 :KSIVDFV T0289 102 :KNSD 1bavA 184 :KNHG T0289 107 :AYDVVFDLH 1bavA 188 :NFKAFLSIH T0289 118 :TSNMGC 1bavA 199 :SQLLLY T0289 126 :ILEDSRNDFLIQMFHYIKTCM 1bavA 207 :GYTTQSIPDKTELNQVAKSAV T0289 147 :APLPCSVYL 1bavA 234 :YGTSYKYGS T0289 156 :IEHPSLKYATTRSIAKY 1bavA 248 :YQASGGSIDWSYNQGIK T0289 173 :PVGIEV 1bavA 266 :SFTFEL T0289 180 :PQPHGVLRADILDQMRRMLKHALDFI 1bavA 275 :GRYGFLLPASQIIPTAQETWLGVLTI T0289 206 :QR 1bavA 302 :EH Number of specific fragments extracted= 17 number of extra gaps= 2 total=374 Number of alignments=22 # 1bavA read from 1bavA/merged-good-all-a2m # found chain 1bavA in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1bavA)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1bavA)Y198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1bavA)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1bavA)Y206 T0289 5 :VAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1bavA 54 :TGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTENY T0289 42 :RAGLEVKPF 1bavA 100 :LDSMDIFLE T0289 51 :ITNPRAVEKC 1bavA 110 :VTNPNGFAFT T0289 61 :TRYI 1bavA 126 :WRKT T0289 65 :D 1bavA 131 :S T0289 66 :C 1bavA 140 :G T0289 67 :DLNRVFDLENLSKEMS 1bavA 142 :DANRNWDAGFGKAGAS T0289 83 :EDLPYEVRRAQEINHLF 1bavA 170 :ANSEVEVKSIVDFVKNH T0289 106 :DAYDVVFDLH 1bavA 187 :GNFKAFLSIH T0289 118 :TSNMGC 1bavA 199 :SQLLLY T0289 126 :ILEDSRNDFLI 1bavA 207 :GYTTQSIPDKT T0289 137 :QMFHYIKTCM 1bavA 225 :SAVAALKSLY T0289 148 :PLPCSVYL 1bavA 235 :GTSYKYGS T0289 156 :IEHPSLKYATTRSIAK 1bavA 248 :YQASGGSIDWSYNQGI T0289 172 :YPVGIEV 1bavA 265 :YSFTFEL T0289 179 :GPQPHG 1bavA 275 :GRYGFL T0289 186 :LR 1bavA 281 :LP T0289 188 :ADILDQMRRMLKHALDFI 1bavA 287 :IPTAQETWLGVLTIMEHT Number of specific fragments extracted= 18 number of extra gaps= 2 total=392 Number of alignments=23 # 1bavA read from 1bavA/merged-good-all-a2m # found chain 1bavA in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1bavA)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1bavA)Y198 Warning: unaligning (T0289)E128 because of BadResidue code BAD_PEPTIDE in next template residue (1bavA)Y206 Warning: unaligning (T0289)D129 because of BadResidue code BAD_PEPTIDE at template residue (1bavA)Y206 Warning: unaligning (T0289)G179 because of BadResidue code BAD_PEPTIDE in next template residue (1bavA)D273 Warning: unaligning (T0289)P180 because of BadResidue code BAD_PEPTIDE at template residue (1bavA)D273 T0289 4 :CVAEEPIKKIAIFGGTHGNEL 1bavA 53 :STGGSNRPAIWIDLGIHSREW T0289 25 :TGVFLVTHWLKNGAEVHR 1bavA 78 :TGVWFAKKFTENYGQNPS T0289 43 :AGLE 1bavA 101 :DSMD T0289 47 :VKPFITNPRAVEKCT 1bavA 106 :FLEIVTNPNGFAFTH T0289 62 :RYI 1bavA 124 :RLW T0289 65 :DCDLNRVFDLEN 1bavA 140 :GVDANRNWDAGF T0289 77 :LSKEMSED 1bavA 157 :SSSPCSET T0289 85 :LPYEVRRAQEINHLF 1bavA 172 :SEVEVKSIVDFVKNH T0289 106 :DAYDVVFDLH 1bavA 187 :GNFKAFLSIH T0289 118 :T 1bavA 199 :S T0289 123 :CTLIL 1bavA 200 :QLLLY T0289 130 :SRNDFLIQMFHYIKTCM 1bavA 214 :PDKTELNQVAKSAVAAL T0289 147 :APLPCS 1bavA 234 :YGTSYK T0289 164 :ATTRSIAKYPVGIEV 1bavA 257 :WSYNQGIKYSFTFEL T0289 181 :Q 1bavA 274 :T T0289 182 :PHGVLR 1bavA 277 :YGFLLP T0289 188 :ADILDQMRRMLKHALDFI 1bavA 287 :IPTAQETWLGVLTIMEHT Number of specific fragments extracted= 17 number of extra gaps= 3 total=409 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 5cpa/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0289/5cpa/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0289/5cpa/merged-good-all-a2m.gz for input Trying 5cpa/merged-good-all-a2m Error: Couldn't open file 5cpa/merged-good-all-a2m or 5cpa/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zliA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0289/1zliA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0289/1zliA/merged-good-all-a2m.gz for input Trying 1zliA/merged-good-all-a2m Error: Couldn't open file 1zliA/merged-good-all-a2m or 1zliA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c0pA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0289 read from 1c0pA/merged-good-all-a2m # 1c0pA read from 1c0pA/merged-good-all-a2m # found chain 1c0pA in training set Warning: unaligning (T0289)I10 because of BadResidue code BAD_PEPTIDE in next template residue (1c0pA)K1005 Warning: unaligning (T0289)K11 because of BadResidue code BAD_PEPTIDE at template residue (1c0pA)K1005 Warning: unaligning (T0289)L135 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c0pA)L1104 Warning: unaligning (T0289)I136 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c0pA)L1104 Warning: unaligning (T0289)P159 because of BadResidue code BAD_PEPTIDE in next template residue (1c0pA)T1163 Warning: unaligning (T0289)S160 because of BadResidue code BAD_PEPTIDE at template residue (1c0pA)T1163 Warning: unaligning (T0289)C217 because of BadResidue code BAD_PEPTIDE in next template residue (1c0pA)T1271 Warning: unaligning (T0289)A218 because of BadResidue code BAD_PEPTIDE at template residue (1c0pA)T1271 T0289 6 :AEEP 1c0pA 1000 :MMHS T0289 12 :KIAIFGGT 1c0pA 1006 :RVVVLGSG T0289 24 :LTGVFLVTHWLK 1c0pA 1014 :VIGLSSALILAR T0289 43 :AGLEVKPFITN 1c0pA 1026 :KGYSVHILARD T0289 72 :FDL 1c0pA 1037 :LPE T0289 77 :LSKEMSEDLPYEVR 1c0pA 1056 :TPFMTLTDGPRQAK T0289 91 :RAQEINHLF 1c0pA 1074 :TFKKWVELV T0289 101 :PKNSD 1c0pA 1083 :PTGHA T0289 121 :MGCTLIL 1c0pA 1091 :KGTRRFA T0289 130 :SRNDF 1c0pA 1098 :QNEDG T0289 137 :QMF 1c0pA 1105 :GHW T0289 140 :HYIKTCM 1c0pA 1144 :QYLAREL T0289 147 :APLPCSVY 1c0pA 1153 :LGATFERR T0289 158 :H 1c0pA 1161 :T T0289 161 :LKYAT 1c0pA 1164 :SLEQA T0289 170 :AKYPVGIEVG 1c0pA 1219 :ASPAYIIPRP T0289 183 :HGVLRADILDQMRRMLKHA 1c0pA 1244 :DLSVNPETVQRILKHCLRL T0289 211 :GKEFPP 1c0pA 1264 :PTISSD T0289 219 :IDVYKIMEKVDYP 1c0pA 1272 :IEGIEVLRHNVGL T0289 252 :KPLHPGDPVFVS 1c0pA 1285 :RPARRGGPRVEA T0289 267 :KVIPLG 1c0pA 1297 :ERIVLP T0289 275 :CTVYPVFVNEAAY 1c0pA 1326 :TLVHAYGFSSAGY Number of specific fragments extracted= 22 number of extra gaps= 4 total=431 Number of alignments=25 # 1c0pA read from 1c0pA/merged-good-all-a2m # found chain 1c0pA in training set Warning: unaligning (T0289)I10 because of BadResidue code BAD_PEPTIDE in next template residue (1c0pA)K1005 Warning: unaligning (T0289)K11 because of BadResidue code BAD_PEPTIDE at template residue (1c0pA)K1005 Warning: unaligning (T0289)S78 because of BadResidue code BAD_PEPTIDE in next template residue (1c0pA)A1053 Warning: unaligning (T0289)K79 because of BadResidue code BAD_PEPTIDE at template residue (1c0pA)A1053 Warning: unaligning (T0289)L135 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c0pA)L1104 Warning: unaligning (T0289)I136 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c0pA)L1104 Warning: unaligning (T0289)H158 because of BadResidue code BAD_PEPTIDE in next template residue (1c0pA)T1163 Warning: unaligning (T0289)P159 because of BadResidue code BAD_PEPTIDE at template residue (1c0pA)T1163 Warning: unaligning (T0289)G179 because of BadResidue code BAD_PEPTIDE at template residue (1c0pA)G1236 Warning: unaligning (T0289)F214 because of BadResidue code BAD_PEPTIDE in next template residue (1c0pA)T1271 Warning: unaligning (T0289)P215 because of BadResidue code BAD_PEPTIDE at template residue (1c0pA)T1271 T0289 7 :EEP 1c0pA 1001 :MHS T0289 12 :KIAIFGGT 1c0pA 1006 :RVVVLGSG T0289 24 :LTGVFLVTHWLK 1c0pA 1014 :VIGLSSALILAR T0289 43 :AGLEVKPFITN 1c0pA 1026 :KGYSVHILARD T0289 64 :I 1c0pA 1037 :L T0289 65 :D 1c0pA 1039 :E T0289 69 :NRVFDLENL 1c0pA 1043 :SQTFASPWA T0289 80 :EMS 1c0pA 1054 :NWT T0289 83 :EDLPYEVRRAQEINHLFGPKNSD 1c0pA 1062 :TDGPRQAKWEESTFKKWVELVPT T0289 117 :TTSNMGCTLILEDSRNDF 1c0pA 1085 :GHAMWLKGTRRFAQNEDG T0289 137 :QMFHYIKTCMAPLPCSVYLIE 1c0pA 1141 :KYCQYLARELQKLGATFERRT T0289 169 :IAKYPVGIEV 1c0pA 1218 :PASPAYIIPR T0289 180 :PQ 1c0pA 1237 :TY T0289 182 :PHG 1c0pA 1242 :DWD T0289 185 :VLRADILDQMRRM 1c0pA 1246 :SVNPETVQRILKH T0289 201 :ALDFIQRFNEG 1c0pA 1259 :CLRLDPTISSD T0289 216 :PCAIDVYKIME 1c0pA 1272 :IEGIEVLRHNV T0289 228 :VDYPRNESG 1c0pA 1283 :GLRPARRGG T0289 269 :IP 1c0pA 1293 :RV T0289 296 :KTTKLTLNAKS 1c0pA 1295 :EAERIVLPLDR Number of specific fragments extracted= 20 number of extra gaps= 6 total=451 Number of alignments=26 # 1c0pA read from 1c0pA/merged-good-all-a2m # found chain 1c0pA in training set Warning: unaligning (T0289)I10 because of BadResidue code BAD_PEPTIDE in next template residue (1c0pA)K1005 Warning: unaligning (T0289)K11 because of BadResidue code BAD_PEPTIDE at template residue (1c0pA)K1005 Warning: unaligning (T0289)F134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c0pA)L1104 Warning: unaligning (T0289)L135 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c0pA)L1104 Warning: unaligning (T0289)K171 because of BadResidue code BAD_PEPTIDE in next template residue (1c0pA)G1230 Warning: unaligning (T0289)Y172 because of BadResidue code BAD_PEPTIDE at template residue (1c0pA)G1230 Warning: unaligning (T0289)E177 because of BadResidue code BAD_PEPTIDE in next template residue (1c0pA)G1236 Warning: unaligning (T0289)V178 because of BadResidue code BAD_PEPTIDE at template residue (1c0pA)G1236 Warning: unaligning (T0289)K212 because of BadResidue code BAD_PEPTIDE in next template residue (1c0pA)T1271 Warning: unaligning (T0289)E213 because of BadResidue code BAD_PEPTIDE at template residue (1c0pA)T1271 T0289 6 :AEEP 1c0pA 1000 :MMHS T0289 12 :KIAIFGGT 1c0pA 1006 :RVVVLGSG T0289 24 :LTGVFLVTHWLK 1c0pA 1014 :VIGLSSALILAR T0289 43 :AGLEVKPFITN 1c0pA 1026 :KGYSVHILARD T0289 71 :VFDLENL 1c0pA 1045 :TFASPWA T0289 79 :KEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVV 1c0pA 1058 :FMTLTDGPRQAKWEESTFKKWVELVPTGHAMWL T0289 122 :GCTLILEDSRND 1c0pA 1091 :KGTRRFAQNEDG T0289 136 :IQM 1c0pA 1105 :GHW T0289 153 :VYLIEHPSLKYATTRSIA 1c0pA 1211 :CTMDSSDPASPAYIIPRP T0289 173 :PVGI 1c0pA 1231 :EVIC T0289 179 :GPQ 1c0pA 1237 :TYG T0289 182 :PHGVLRADILDQMRRM 1c0pA 1243 :WDLSVNPETVQRILKH T0289 201 :ALDFIQRFNEG 1c0pA 1259 :CLRLDPTISSD T0289 214 :FPPCAIDVYKIM 1c0pA 1272 :IEGIEVLRHNVG T0289 296 :KTTKLTLNAK 1c0pA 1295 :EAERIVLPLD Number of specific fragments extracted= 15 number of extra gaps= 5 total=466 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1obr/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1obr expands to /projects/compbio/data/pdb/1obr.pdb.gz 1obr:Warning: there is no chain 1obr will retry with 1obrA # T0289 read from 1obr/merged-good-all-a2m # 1obr read from 1obr/merged-good-all-a2m # adding 1obr to template set # found chain 1obr in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1obr)Y206 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1obr)Y206 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1obr)Y214 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1obr)Y214 T0289 6 :AEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1obr 55 :TDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNY T0289 42 :RAGLEVKPF 1obr 100 :VNNREIYIV T0289 51 :ITNPRAVEKC 1obr 110 :NINPDGGEYD T0289 61 :TRYI 1obr 128 :WRKN T0289 66 :CDLNRVFDL 1obr 143 :TDLNRNYGY T0289 86 :P 1obr 172 :S T0289 87 :YEV 1obr 177 :PET T0289 93 :QEINHLF 1obr 180 :AAMRDFI T0289 100 :GPKNSDDAYDVVFDLH 1obr 189 :RVVGGKQQIKTLITFH T0289 118 :TSNMGC 1obr 207 :SELILY T0289 126 :ILEDSRN 1obr 215 :GYTYTDV T0289 133 :DFLIQMFHYIKTCM 1obr 224 :DMTQDDFNVFKTMA T0289 147 :APLPCSVYL 1obr 244 :NGYTPQQAS T0289 156 :IEHP 1obr 255 :YITD T0289 160 :SLKYATTRSIAKYPVGIEVGPQP 1obr 260 :DMTDWAYGQHKIFAFTFEMYPTS T0289 183 :HGVLR 1obr 286 :GFYPP T0289 188 :ADILDQMRRMLKHALDFI 1obr 295 :GRETSRNKEAVLYVAEKA T0289 206 :QRFNEG 1obr 316 :YSVIGK Number of specific fragments extracted= 18 number of extra gaps= 2 total=484 Number of alignments=28 # 1obr read from 1obr/merged-good-all-a2m # found chain 1obr in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1obr)Y206 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1obr)Y206 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1obr)Y214 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1obr)Y214 T0289 5 :VAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1obr 54 :GTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNY T0289 42 :RAGLEVKPF 1obr 100 :VNNREIYIV T0289 51 :ITNPRAVEKC 1obr 110 :NINPDGGEYD T0289 61 :TRYI 1obr 128 :WRKN T0289 66 :C 1obr 142 :G T0289 67 :DLNRVFDLENLSKEMS 1obr 144 :DLNRNYGYKWGCCGGS T0289 83 :EDLPYEVRRAQEINHLFGPKNS 1obr 173 :AFSAPETAAMRDFINSRVVGGK T0289 106 :DAYDVVFDLH 1obr 195 :QQIKTLITFH T0289 118 :TSNMGC 1obr 207 :SELILY T0289 126 :ILED 1obr 215 :GYTY T0289 130 :SRNDFLIQMFHYIKTCMA 1obr 224 :DMTQDDFNVFKTMANTMA T0289 148 :PLPCSV 1obr 245 :GYTPQQ T0289 155 :LIEHPSLKYATTRSIAKYPVGIEVGPQPHG 1obr 255 :YITDGDMTDWAYGQHKIFAFTFEMYPTSYN T0289 185 :VLR 1obr 288 :YPP T0289 188 :ADILDQMRRMLKHALD 1obr 295 :GRETSRNKEAVLYVAE Number of specific fragments extracted= 15 number of extra gaps= 2 total=499 Number of alignments=29 # 1obr read from 1obr/merged-good-all-a2m # found chain 1obr in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1obr)Y206 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1obr)Y206 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1obr)Y214 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1obr)Y214 T0289 6 :AEEPIKKIAIFGGTHGNEL 1obr 55 :TDENEPEVLYTALHHAREH T0289 25 :TGVFLVTHWLKNGAEVHR 1obr 78 :MALYTLDLFTQNYNLDSR T0289 43 :AGLEV 1obr 101 :NNREI T0289 48 :KPFITNPRAVEK 1obr 107 :IVFNINPDGGEY T0289 65 :DCDLNRVFDLENL 1obr 142 :GTDLNRNYGYKWG T0289 78 :SKEMSEDL 1obr 161 :GSPSSETY T0289 87 :YEVRRAQEINHLFGPKN 1obr 177 :PETAAMRDFINSRVVGG T0289 105 :DDAYDVVFDLH 1obr 194 :KQQIKTLITFH T0289 118 :TSNMGC 1obr 207 :SELILY T0289 126 :ILEDSRN 1obr 215 :GYTYTDV T0289 133 :D 1obr 228 :D T0289 134 :FLIQMFHYIKTCMAPLPCS 1obr 232 :VFKTMANTMAQTNGYTPQQ T0289 164 :ATTRSIAKYPVGIEVGPQ 1obr 264 :WAYGQHKIFAFTFEMYPT T0289 182 :PHGVLR 1obr 284 :NPGFYP T0289 188 :ADILDQMRRMLKHALDFIQRFN 1obr 295 :GRETSRNKEAVLYVAEKADCPY Number of specific fragments extracted= 15 number of extra gaps= 2 total=514 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cpb/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0289/1cpb/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0289/1cpb/merged-good-all-a2m.gz for input Trying 1cpb/merged-good-all-a2m Error: Couldn't open file 1cpb/merged-good-all-a2m or 1cpb/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bcoA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bcoA expands to /projects/compbio/data/pdb/2bco.pdb.gz 2bcoA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0289 read from 2bcoA/merged-good-all-a2m # 2bcoA read from 2bcoA/merged-good-all-a2m # adding 2bcoA to template set # found chain 2bcoA in template set T0289 2 :TSCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 2bcoA 45 :IPENPTQETKNIIISCGIHGDETAPMELVDSIIKDIESGF T0289 42 :RAG 2bcoA 87 :VDA T0289 46 :EVKPFITNPRAVEKCTRYIDCDLNRVFD 2bcoA 90 :RCLFIIAHPESTLAHTRFLEENLNRLFD T0289 77 :LSKEMSE 2bcoA 118 :EKEHEPT T0289 87 :YEVRRAQEINHLF 2bcoA 125 :KELAIADTLKLLV T0289 100 :GPKNSDDAYDVVFDLHNT 2bcoA 140 :FYQDTEPKTRWHLDLHCA T0289 118 :TSNMGCTLILE 2bcoA 159 :RGSKHYTFAVS T0289 129 :DSRNDFLIQMFHYIK 2bcoA 172 :TRHPVRSKALVDFLD T0289 146 :MAPLPCSVYL 2bcoA 187 :SAHIEAVLLS T0289 156 :IEHPSLKYATTRSIAKYPVGIEVGPQ 2bcoA 198 :SPSSTFSWYSAENYSAQALTMELGRV T0289 182 :PHGVLRADILDQMRRMLKHALD 2bcoA 225 :RIGENALDRLTAFDLALRNLIA T0289 211 :GKEFP 2bcoA 247 :EAQPE T0289 216 :PCAIDVYKIMEKVDYP 2bcoA 254 :SKPCIKYRVSRTIVRL T0289 235 :SGDVAAVIHPNL 2bcoA 270 :HDDFDFMFDDNV T0289 249 :QDWKPLHPGDPVFVSLD 2bcoA 282 :ENFTSFVHGEVFGHDGD T0289 266 :GKVIPLGGDCTVYPVF 2bcoA 300 :PLMAKNDNEAIVFPNR Number of specific fragments extracted= 16 number of extra gaps= 0 total=530 Number of alignments=31 # 2bcoA read from 2bcoA/merged-good-all-a2m # found chain 2bcoA in template set Warning: unaligning (T0289)T310 because last residue in template chain is (2bcoA)D342 T0289 4 :CVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 2bcoA 47 :ENPTQETKNIIISCGIHGDETAPMELVDSIIKDIESGF T0289 42 :RA 2bcoA 87 :VD T0289 45 :LEVKPFITNPRAVEKCTRYIDCDLNRVFDLENLSKE 2bcoA 89 :ARCLFIIAHPESTLAHTRFLEENLNRLFDEKEHEPT T0289 87 :YEVRRAQEINHLFGPKNSD 2bcoA 125 :KELAIADTLKLLVRDFYQD T0289 106 :DAYDVVFDLHNT 2bcoA 146 :PKTRWHLDLHCA T0289 118 :TSNMGCTLILED 2bcoA 159 :RGSKHYTFAVSP T0289 130 :SRNDFLIQMFHYIKTC 2bcoA 173 :RHPVRSKALVDFLDSA T0289 148 :PLPCSVYLIEHP 2bcoA 189 :HIEAVLLSNSPS T0289 160 :SLKYATTRSIAKYPVGIEVGPQ 2bcoA 202 :TFSWYSAENYSAQALTMELGRV T0289 182 :PHGVLRADILDQMRRMLKHAL 2bcoA 225 :RIGENALDRLTAFDLALRNLI T0289 208 :FNEGKEFPPCAIDVYKIMEKV 2bcoA 246 :AEAQPEHLSKPCIKYRVSRTI T0289 232 :RNESGDVAAVIHPNLQD 2bcoA 267 :VRLHDDFDFMFDDNVEN T0289 251 :WKPLHPGD 2bcoA 284 :FTSFVHGE T0289 260 :VFVSLDGKVIPLGGDCT 2bcoA 292 :VFGHDGDKPLMAKNDNE T0289 278 :YPVFVNEAAYYEKKEAFAKTTKLTLNAKS 2bcoA 309 :AIVFPNRHVAIGQRAALMVCEVKTRFEEG T0289 307 :IRS 2bcoA 339 :LVY Number of specific fragments extracted= 16 number of extra gaps= 0 total=546 Number of alignments=32 # 2bcoA read from 2bcoA/merged-good-all-a2m # found chain 2bcoA in template set T0289 3 :SCVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVHR 2bcoA 46 :PENPTQETKNIIISCGIHGDETAPMELVDSIIKDIESGFQ T0289 43 :AGLEVKPFITNPRAVEKCTRYIDCDLNRVFD 2bcoA 87 :VDARCLFIIAHPESTLAHTRFLEENLNRLFD T0289 78 :SKEMSEDLPYEVRRAQEINHLFGPKNSDDAYDVVFDLHNTT 2bcoA 118 :EKEHEPTKELAIADTLKLLVRDFYQDTEPKTRWHLDLHCAI T0289 119 :SNMGCTLILEDSRNDFLIQMFHYIKTCMAPLPCSVYLIEHPSLKYATTRSIAKYPVGIEVGPQ 2bcoA 161 :SKHYTFAVSPKTRHPVRSKALVDFLDSAHIEAVLLSNSPSSTFSWYSAENYSAQALTMELGRV T0289 182 :PHGVLRADILDQMRRMLKHALDFIQRFN 2bcoA 225 :RIGENALDRLTAFDLALRNLIAEAQPEH T0289 215 :PPCAIDVYKIMEKVD 2bcoA 253 :LSKPCIKYRVSRTIV T0289 235 :SGDVAAVIHPNLQDQDWKPLHPGDPVFVSLDGKVIPLGGDCTVYPVFVNEA 2bcoA 268 :RLHDDFDFMFDDNVENFTSFVHGEVFGHDGDKPLMAKNDNEAIVFPNRHVA Number of specific fragments extracted= 7 number of extra gaps= 0 total=553 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1uwyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0289/1uwyA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0289/1uwyA/merged-good-all-a2m.gz for input Trying 1uwyA/merged-good-all-a2m Error: Couldn't open file 1uwyA/merged-good-all-a2m or 1uwyA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pytB/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0289/1pytB/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0289/1pytB/merged-good-all-a2m.gz for input Trying 1pytB/merged-good-all-a2m Error: Couldn't open file 1pytB/merged-good-all-a2m or 1pytB/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yme/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yme expands to /projects/compbio/data/pdb/1yme.pdb.gz 1yme:Warning: there is no chain 1yme will retry with 1ymeA # T0289 read from 1yme/merged-good-all-a2m # 1yme read from 1yme/merged-good-all-a2m # adding 1yme to template set # found chain 1yme in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1yme)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1yme)Y198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1yme)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1yme)Y206 T0289 4 :CVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1yme 53 :STGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDY T0289 42 :RAGLEVKPF 1yme 100 :LDSMDIFLE T0289 51 :ITNPRAVEKC 1yme 110 :VTNPDGFAFT T0289 64 :I 1yme 129 :T T0289 65 :DCDLNRVFDL 1yme 140 :GVDANRNWDA T0289 75 :ENLSKEM 1yme 167 :GKYANSE T0289 87 :YEV 1yme 174 :VEV T0289 93 :QEINHLF 1yme 177 :KSIVDFV T0289 102 :KNSD 1yme 184 :KDHG T0289 107 :AYDVVFDLH 1yme 188 :NFKAFLSIH T0289 118 :TSNMGC 1yme 199 :SQLLLY T0289 126 :ILEDSRNDFLIQMFHYIKTCM 1yme 207 :GYTTQSIPDKTELNQVAKSAV T0289 147 :APLPCSVYL 1yme 234 :YGTSYKYGS T0289 156 :IEHPSLKYATTRSIAKY 1yme 248 :YQASGGSIDWSYNQGIK T0289 173 :PVGIEV 1yme 266 :SFTFEL T0289 179 :GPQ 1yme 275 :GRY T0289 183 :HGVLRADILDQMRRMLKH 1yme 278 :GFLLPASQIIPTAQETWL T0289 201 :ALDFIQRFNE 1yme 297 :VLTIMEHTVN Number of specific fragments extracted= 18 number of extra gaps= 2 total=571 Number of alignments=34 # 1yme read from 1yme/merged-good-all-a2m # found chain 1yme in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1yme)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1yme)Y198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1yme)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1yme)Y206 T0289 5 :VAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1yme 54 :TGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDY T0289 42 :RAGLEVKPF 1yme 100 :LDSMDIFLE T0289 51 :ITNPRAVEKC 1yme 110 :VTNPDGFAFT T0289 61 :TRYI 1yme 126 :WRKT T0289 65 :D 1yme 131 :S T0289 66 :C 1yme 140 :G T0289 67 :DLNRVFDLENLSKEMS 1yme 142 :DANRNWDAGFGKAGAS T0289 83 :EDLPYEVRRAQEINHLF 1yme 170 :ANSEVEVKSIVDFVKDH T0289 106 :DAYDVVFDLH 1yme 187 :GNFKAFLSIH T0289 118 :TSNMGC 1yme 199 :SQLLLY T0289 126 :ILEDSRNDFLI 1yme 207 :GYTTQSIPDKT T0289 137 :QMFHYIKTCM 1yme 225 :SAVAALKSLY T0289 148 :PLPCSVYL 1yme 235 :GTSYKYGS T0289 156 :IEHPSLKYATTRSIAK 1yme 248 :YQASGGSIDWSYNQGI T0289 172 :YPVGIEV 1yme 265 :YSFTFEL T0289 179 :GPQPHGVLRADI 1yme 275 :GRYGFLLPASQI T0289 191 :LDQMRRMLKHALDFI 1yme 290 :AQETWLGVLTIMEHT Number of specific fragments extracted= 17 number of extra gaps= 2 total=588 Number of alignments=35 # 1yme read from 1yme/merged-good-all-a2m # found chain 1yme in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1yme)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1yme)Y198 Warning: unaligning (T0289)E128 because of BadResidue code BAD_PEPTIDE in next template residue (1yme)Y206 Warning: unaligning (T0289)D129 because of BadResidue code BAD_PEPTIDE at template residue (1yme)Y206 Warning: unaligning (T0289)G179 because of BadResidue code BAD_PEPTIDE in next template residue (1yme)D273 Warning: unaligning (T0289)P180 because of BadResidue code BAD_PEPTIDE at template residue (1yme)D273 T0289 5 :VAEEPIKKIAIFGGTHGNEL 1yme 54 :TGGSNRPAIWIDLGIHSREW T0289 25 :TGVFLVTHWLKNGAEVHR 1yme 78 :TGVWFAKKFTEDYGQDPS T0289 43 :AGLE 1yme 101 :DSMD T0289 47 :VKPFITNPRAVEKCT 1yme 106 :FLEIVTNPDGFAFTH T0289 62 :RYI 1yme 124 :RLW T0289 65 :DCDLNRVFDLEN 1yme 140 :GVDANRNWDAGF T0289 77 :LSKEMSEDL 1yme 157 :SSSPCSETY T0289 87 :YEVRRAQEINHLF 1yme 174 :VEVKSIVDFVKDH T0289 106 :DAYDVVFDLH 1yme 187 :GNFKAFLSIH T0289 118 :T 1yme 199 :S T0289 123 :CTLIL 1yme 200 :QLLLY T0289 130 :SRNDFLIQMFHYIKTCM 1yme 214 :PDKTELNQVAKSAVAAL T0289 147 :APLPCS 1yme 234 :YGTSYK T0289 163 :YATTRSIAKYPVGIEV 1yme 256 :DWSYNQGIKYSFTFEL T0289 181 :Q 1yme 274 :T T0289 182 :PHG 1yme 276 :RYG T0289 185 :VLR 1yme 280 :LLP T0289 188 :ADILDQMRRMLKHALDFI 1yme 287 :IPTAQETWLGVLTIMEHT Number of specific fragments extracted= 18 number of extra gaps= 3 total=606 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1aye/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1aye expands to /projects/compbio/data/pdb/1aye.pdb.gz 1aye:Warning: there is no chain 1aye will retry with 1ayeA WARNING: atom 767 has residue number 1 < previous residue 99A in 1aye # T0289 read from 1aye/merged-good-all-a2m # 1aye read from 1aye/merged-good-all-a2m # adding 1aye to template set # found chain 1aye in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1aye)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1aye)Y198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1aye)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1aye)Y206 T0289 5 :VAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1aye 53 :STGGDKPAIWLDAGIHAREWVTQATALWTANKIVSDY T0289 42 :RAGLEVKPF 1aye 100 :LDALDIFLL T0289 51 :ITNPRAVEKC 1aye 110 :VTNPDGYVFS T0289 61 :TRYI 1aye 126 :WRKT T0289 65 :DCDLNRVFDL 1aye 140 :GVDPNRNWDA T0289 76 :NLSKEM 1aye 168 :PSANSE T0289 87 :YEV 1aye 174 :VEV T0289 93 :QEINHLF 1aye 177 :KSIVDFI T0289 102 :KNSD 1aye 184 :KSHG T0289 107 :AYDVVFDLH 1aye 188 :KVKAFIILH T0289 118 :TSNMGC 1aye 199 :SQLLMF T0289 126 :ILEDSRNDFLIQMFHYIKTCM 1aye 207 :GYKCTKLDDFDELSEVAQKAA T0289 147 :APLPCSVYL 1aye 234 :HGTKYKVGP T0289 156 :IEHPSLKYATTRSIAKY 1aye 248 :YQASGGSIDWSYDYGIK T0289 173 :PVGIEV 1aye 266 :SFAFEL T0289 179 :GP 1aye 275 :GR T0289 182 :PHGVLR 1aye 277 :YGFLLP T0289 188 :ADILDQMRRMLKHALDFIQ 1aye 287 :LPTAEETWLGLKAIMEHVR Number of specific fragments extracted= 18 number of extra gaps= 2 total=624 Number of alignments=37 # 1aye read from 1aye/merged-good-all-a2m # found chain 1aye in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1aye)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1aye)Y198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1aye)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1aye)Y206 T0289 5 :VAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1aye 53 :STGGDKPAIWLDAGIHAREWVTQATALWTANKIVSDY T0289 42 :RAGLEVKPF 1aye 100 :LDALDIFLL T0289 51 :ITNPRAVEKC 1aye 110 :VTNPDGYVFS T0289 61 :TRYI 1aye 126 :WRKT T0289 66 :C 1aye 140 :G T0289 67 :DLNRVFDLENLSKEMS 1aye 142 :DPNRNWDAGFGGPGAS T0289 83 :EDLPYEVRRAQEINHLF 1aye 170 :ANSEVEVKSIVDFIKSH T0289 106 :DAYDVVFDLH 1aye 187 :GKVKAFIILH T0289 118 :TSNMGC 1aye 199 :SQLLMF T0289 126 :ILEDSRNDFLIQM 1aye 207 :GYKCTKLDDFDEL T0289 139 :FHYIKTCMA 1aye 223 :AQKAAQSLR T0289 148 :PLPCSVYL 1aye 235 :GTKYKVGP T0289 156 :IEHPSLKYATTRSIAK 1aye 248 :YQASGGSIDWSYDYGI T0289 172 :YPVGIEV 1aye 265 :YSFAFEL T0289 179 :GPQPHG 1aye 275 :GRYGFL T0289 186 :LR 1aye 281 :LP T0289 188 :ADILDQMRRMLKHALDFIQRF 1aye 287 :LPTAEETWLGLKAIMEHVRDH Number of specific fragments extracted= 17 number of extra gaps= 2 total=641 Number of alignments=38 # 1aye read from 1aye/merged-good-all-a2m # found chain 1aye in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1aye)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1aye)Y198 Warning: unaligning (T0289)E128 because of BadResidue code BAD_PEPTIDE in next template residue (1aye)Y206 Warning: unaligning (T0289)D129 because of BadResidue code BAD_PEPTIDE at template residue (1aye)Y206 Warning: unaligning (T0289)G179 because of BadResidue code BAD_PEPTIDE in next template residue (1aye)D273 Warning: unaligning (T0289)P180 because of BadResidue code BAD_PEPTIDE at template residue (1aye)D273 T0289 5 :VAEEPIKKIAIFGGTHGNEL 1aye 53 :STGGDKPAIWLDAGIHAREW T0289 25 :TGVFLVTHWLKNGAEVHR 1aye 78 :TALWTANKIVSDYGKDPS T0289 43 :AGLEVKPFITNPRAVEKCT 1aye 102 :ALDIFLLPVTNPDGYVFSQ T0289 62 :RYI 1aye 124 :RMW T0289 65 :DCDLNRVFDLENLSKE 1aye 140 :GVDPNRNWDAGFGGPG T0289 81 :MSEDLPYEVRRAQEINHLF 1aye 168 :PSANSEVEVKSIVDFIKSH T0289 106 :DAYDVVFDLH 1aye 187 :GKVKAFIILH T0289 118 :T 1aye 199 :S T0289 124 :TLIL 1aye 201 :LLMF T0289 130 :SRND 1aye 207 :GYKC T0289 134 :FLIQMFHYIKTCMA 1aye 222 :VAQKAAQSLRSLHG T0289 149 :LPCS 1aye 236 :TKYK T0289 164 :ATTRSIAKYPVGIEV 1aye 257 :WSYDYGIKYSFAFEL T0289 181 :Q 1aye 274 :T T0289 182 :PHGVL 1aye 276 :RYGFL T0289 188 :ADILDQMRRMLKHALDFIQRF 1aye 287 :LPTAEETWLGLKAIMEHVRDH Number of specific fragments extracted= 16 number of extra gaps= 3 total=657 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1jqgA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1jqgA expands to /projects/compbio/data/pdb/1jqg.pdb.gz 1jqgA:WARNING: atom 739 has residue number 1 < previous residue 100P in 1jqgA # T0289 read from 1jqgA/merged-good-all-a2m # 1jqgA read from 1jqgA/merged-good-all-a2m # adding 1jqgA to template set # found chain 1jqgA in template set Warning: unaligning (T0289)N116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1jqgA)F198 Warning: unaligning (T0289)T117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1jqgA)F198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1jqgA)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1jqgA)Y206 T0289 6 :AEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1jqgA 55C:QDASKPVVMMQSLLHCREWVTLPATLYAIHKLVIDV T0289 42 :RAGLEVKPF 1jqgA 100 :INNIDWIIL T0289 51 :ITNPRAVEKC 1jqgA 110 :VANPDGYVHT T0289 61 :TRYI 1jqgA 126 :WRKN T0289 65 :DCDLNRVFDL 1jqgA 140 :GVDLNRNFGM T0289 75 :ENLSKEMS 1jqgA 167 :GRSAFSEP T0289 88 :EVRRAQEINHLF 1jqgA 175 :ESSVIRDIIAEH T0289 104 :SD 1jqgA 186A:RN T0289 107 :AYDVVFDLH 1jqgA 188 :RMALYLDIH T0289 118 :TSNMGC 1jqgA 199 :GSMILY T0289 126 :IL 1jqgA 207 :GN T0289 129 :DSRNDFLIQMF 1jqgA 210 :GVLPSNALQLH T0289 143 :KTCM 1jqgA 224 :VQMA T0289 147 :APLPCSV 1jqgA 236 :KDYIVGN T0289 154 :YLIEHPSLKYATTRSIAKYPVGIEVGPQP 1jqgA 247 :LYAASGGASDYAMQAAAPFSYTYELPAYR T0289 183 :HGVLRADILDQMRRMLKHALDFI 1jqgA 278 :GFLVDPDFIEQAGFETWEGIKVG T0289 206 :QRFNE 1jqgA 302 :RAAAA Number of specific fragments extracted= 17 number of extra gaps= 2 total=674 Number of alignments=40 # 1jqgA read from 1jqgA/merged-good-all-a2m # found chain 1jqgA in template set Warning: unaligning (T0289)N116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1jqgA)F198 Warning: unaligning (T0289)T117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1jqgA)F198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1jqgA)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1jqgA)Y206 T0289 6 :AEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1jqgA 55C:QDASKPVVMMQSLLHCREWVTLPATLYAIHKLVIDV T0289 42 :RAGLEVKPF 1jqgA 100 :INNIDWIIL T0289 51 :ITNPRAVEKC 1jqgA 110 :VANPDGYVHT T0289 61 :TRYID 1jqgA 126 :WRKNR T0289 66 :C 1jqgA 140 :G T0289 67 :DLNRVFDLENLSKEMS 1jqgA 142 :DLNRNFGMNWGTASSS T0289 83 :EDLPYEVRRAQEINHLFG 1jqgA 170 :AFSEPESSVIRDIIAEHR T0289 106 :DAYDVVFDLH 1jqgA 187 :NRMALYLDIH T0289 118 :TSNMGC 1jqgA 199 :GSMILY T0289 126 :I 1jqgA 207 :G T0289 128 :EDSRNDFLIQM 1jqgA 209 :NGVLPSNALQL T0289 139 :FHYIKTCMAPL 1jqgA 223 :GVQMAQAIDRV T0289 150 :PCSVY 1jqgA 237 :DYIVG T0289 155 :LIEHPSLKYATTRSIAKYPVGIEVGPQPHG 1jqgA 248 :YAASGGASDYAMQAAAPFSYTYELPAYRNS T0289 185 :VLRADILDQMRRMLKHALDFI 1jqgA 280 :LVDPDFIEQAGFETWEGIKVG Number of specific fragments extracted= 15 number of extra gaps= 2 total=689 Number of alignments=41 # 1jqgA read from 1jqgA/merged-good-all-a2m # found chain 1jqgA in template set Warning: unaligning (T0289)N116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1jqgA)F198 Warning: unaligning (T0289)T117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1jqgA)F198 T0289 9 :PIKKIAIFGGTHGNE 1jqgA 58 :SKPVVMMQSLLHCRE T0289 24 :LTGVFLVTHWLKNGAEVHR 1jqgA 77 :PATLYAIHKLVIDVTESDL T0289 43 :AGLEVK 1jqgA 101 :NNIDWI T0289 49 :PFITNPRAVEKCT 1jqgA 108 :LPVANPDGYVHTF T0289 62 :RYI 1jqgA 124 :RYW T0289 65 :DCDLNRVFDLENLSKEMSE 1jqgA 140 :GVDLNRNFGMNWGTASSSS T0289 87 :YEVRRAQEINHLF 1jqgA 174 :PESSVIRDIIAEH T0289 105 :DDAYDVVFDLH 1jqgA 186A:RNRMALYLDIH T0289 118 :TS 1jqgA 199 :GS T0289 124 :TLIL 1jqgA 201 :MILY T0289 128 :EDSRNDFLIQMFHYIKTCMAP 1jqgA 212 :LPSNALQLHLIGVQMAQAIDR T0289 149 :LPCS 1jqgA 236 :KDYI T0289 153 :VYLIEHPSLKYATTRSIAKYPVGIEVGPQPHGVLR 1jqgA 246 :VLYAASGGASDYAMQAAAPFSYTYELPAYRNSVWF T0289 188 :ADILDQMRRMLKHALDFI 1jqgA 287 :EQAGFETWEGIKVGARAA Number of specific fragments extracted= 14 number of extra gaps= 1 total=703 Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1d3cA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1d3cA expands to /projects/compbio/data/pdb/1d3c.pdb.gz 1d3cA:# T0289 read from 1d3cA/merged-good-all-a2m # 1d3cA read from 1d3cA/merged-good-all-a2m # adding 1d3cA to template set # found chain 1d3cA in template set T0289 30 :VTHWLKNGAEVHRAG 1d3cA 54 :WQGIINKINDGYLTG T0289 45 :LEVKPF 1d3cA 71 :VTAIWI T0289 51 :I 1d3cA 78 :Q T0289 70 :RVFDL 1d3cA 82 :NIYSI T0289 75 :ENLSKEMS 1d3cA 109 :NPAYGTIA T0289 88 :EV 1d3cA 117 :DF T0289 93 :QEINHLF 1d3cA 119 :QNLIAAA T0289 104 :SDDAYDVVFDLH 1d3cA 126 :HAKNIKVIIDFA T0289 121 :MGCTLILEDSRNDFLIQMF 1d3cA 138 :PNHTSPASSDQPSFAENGR T0289 140 :HYIKTCM 1d3cA 213 :DAIKMWL T0289 147 :APLPCSVYL 1d3cA 221 :LGIDGIRMN T0289 160 :SL 1d3cA 230 :AV T0289 170 :AKYPVGIEVGPQPHGVLRADILDQMRR 1d3cA 249 :YKPVFTFGQWFLGVNEVSPENHKFANE T0289 199 :KHALDFIQRFNEGKE 1d3cA 283 :FRFAQKVRQVFRDNT T0289 218 :AIDVYKIME 1d3cA 538 :GADITSWED T0289 227 :KVDYPRNESGDVAAVIHPNLQD 1d3cA 550 :KVKIPAVAGGNYNIKVANAAGT T0289 249 :QDWKPLHPGDPVFV 1d3cA 577 :DNFEVLSGDQVSVR T0289 263 :SLDGKVIPLGGDCTVYP 1d3cA 592 :VVNNATTALGQNVYLTG Number of specific fragments extracted= 18 number of extra gaps= 0 total=721 Number of alignments=43 # 1d3cA read from 1d3cA/merged-good-all-a2m # found chain 1d3cA in template set T0289 30 :VTHWLKNGAEVHRAGL 1d3cA 54 :WQGIINKINDGYLTGM T0289 46 :EVKPF 1d3cA 72 :TAIWI T0289 53 :NP 1d3cA 78 :QP T0289 66 :CDLNRVF 1d3cA 99 :GYWARDF T0289 73 :DLENLSKE 1d3cA 108 :TNPAYGTI T0289 87 :YEV 1d3cA 116 :ADF T0289 93 :QEINHLFGP 1d3cA 119 :QNLIAAAHA T0289 106 :DAYDVVFDLH 1d3cA 128 :KNIKVIIDFA T0289 121 :MGCTLILEDSRNDFLI 1d3cA 138 :PNHTSPASSDQPSFAE T0289 137 :QMFHYIKTC 1d3cA 213 :DAIKMWLDL T0289 148 :PLPCSVYLIEHP 1d3cA 222 :GIDGIRMNAVKH T0289 161 :L 1d3cA 240 :K T0289 169 :IAKYPVGIEVGPQPHGVLRADILDQMRR 1d3cA 248 :NYKPVFTFGQWFLGVNEVSPENHKFANE T0289 199 :KHALDFI 1d3cA 283 :FRFAQKV T0289 206 :QRFNEG 1d3cA 291 :QVFRDN T0289 212 :KEFPPCAIDVYKIM 1d3cA 628 :QVVYQYPNWYYDVS T0289 232 :RNESGDVAAV 1d3cA 642 :VPAGKTIEFK T0289 260 :VFVSLDGKVIPLGGDCT 1d3cA 652 :FLKKQGSTVTWEGGSNH T0289 299 :KLTLNAKSIRS 1d3cA 669 :TFTAPSSGTAT Number of specific fragments extracted= 19 number of extra gaps= 0 total=740 Number of alignments=44 # 1d3cA read from 1d3cA/merged-good-all-a2m # found chain 1d3cA in template set T0289 91 :RAQEINHLFGPK 1d3cA 117 :DFQNLIAAAHAK T0289 107 :AYDVVFDL 1d3cA 129 :NIKVIIDF T0289 120 :NMGCTLILEDSRNDFLIQ 1d3cA 137 :APNHTSPASSDQPSFAEN T0289 149 :LPCS 1d3cA 155 :GRLY T0289 153 :VYLIEHPSLKY 1d3cA 175 :FHHNGGTDFST T0289 165 :TTRSIAKY 1d3cA 186 :TENGIYKN T0289 184 :GVLRADILDQMRRMLKHALDF 1d3cA 201 :NHNNSTVDVYLKDAIKMWLDL Number of specific fragments extracted= 7 number of extra gaps= 0 total=747 Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1m4lA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0289 read from 1m4lA/merged-good-all-a2m # 1m4lA read from 1m4lA/merged-good-all-a2m # found chain 1m4lA in training set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1m4lA)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1m4lA)Y198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1m4lA)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1m4lA)Y206 T0289 4 :CVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1m4lA 53 :STGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDY T0289 42 :RAGLEVKPF 1m4lA 100 :LDSMDIFLE T0289 51 :ITNPRAVEKC 1m4lA 110 :VTNPDGFAFT T0289 64 :I 1m4lA 129 :T T0289 65 :DCDLNRVFDL 1m4lA 140 :GVDANRNWDA T0289 75 :ENLSKEM 1m4lA 167 :GKYANSE T0289 87 :YEV 1m4lA 174 :VEV T0289 93 :QEINHLF 1m4lA 177 :KSIVDFV T0289 102 :KNSD 1m4lA 184 :KDHG T0289 107 :AYDVVFDLH 1m4lA 188 :NFKAFLSIH T0289 118 :TSNMGC 1m4lA 199 :SQLLLY T0289 126 :ILEDSRNDFLIQMFHYIKTCM 1m4lA 207 :GYTTQSIPDKTELNQVAKSAV T0289 147 :APLPCSVYL 1m4lA 234 :YGTSYKYGS T0289 156 :IEHPSLKYATTRSIAKY 1m4lA 248 :YQASGGSIDWSYNQGIK T0289 173 :PVGIEV 1m4lA 266 :SFTFEL T0289 179 :GPQPH 1m4lA 275 :GRYGF T0289 185 :VLR 1m4lA 280 :LLP T0289 188 :ADILDQMRRMLKHALDFI 1m4lA 287 :IPTAQETWLGVLTIMEHT Number of specific fragments extracted= 18 number of extra gaps= 2 total=765 Number of alignments=46 # 1m4lA read from 1m4lA/merged-good-all-a2m # found chain 1m4lA in training set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1m4lA)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1m4lA)Y198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (1m4lA)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (1m4lA)Y206 T0289 5 :VAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1m4lA 54 :TGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDY T0289 42 :RAGLEVKPF 1m4lA 100 :LDSMDIFLE T0289 51 :ITNPRAVEKC 1m4lA 110 :VTNPDGFAFT T0289 61 :TRYI 1m4lA 126 :WRKT T0289 65 :D 1m4lA 131 :S T0289 66 :C 1m4lA 140 :G T0289 67 :DLNRVFDLENLSKEMS 1m4lA 142 :DANRNWDAGFGKAGAS T0289 83 :EDLPYEVRRAQEINHLF 1m4lA 170 :ANSEVEVKSIVDFVKDH T0289 106 :DAYDVVFDLH 1m4lA 187 :GNFKAFLSIH T0289 118 :TSNMGC 1m4lA 199 :SQLLLY T0289 126 :ILEDSRNDFLI 1m4lA 207 :GYTTQSIPDKT T0289 137 :QMFHYIKTCM 1m4lA 225 :SAVAALKSLY T0289 148 :PLPCSVYL 1m4lA 235 :GTSYKYGS T0289 156 :IEHPSLKYATTRSIAK 1m4lA 248 :YQASGGSIDWSYNQGI T0289 172 :YPVGIEV 1m4lA 265 :YSFTFEL T0289 179 :GPQPHGVLRADI 1m4lA 275 :GRYGFLLPASQI T0289 191 :LDQMRRMLKHALDFI 1m4lA 290 :AQETWLGVLTIMEHT Number of specific fragments extracted= 17 number of extra gaps= 2 total=782 Number of alignments=47 # 1m4lA read from 1m4lA/merged-good-all-a2m # found chain 1m4lA in training set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (1m4lA)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (1m4lA)Y198 Warning: unaligning (T0289)E128 because of BadResidue code BAD_PEPTIDE in next template residue (1m4lA)Y206 Warning: unaligning (T0289)D129 because of BadResidue code BAD_PEPTIDE at template residue (1m4lA)Y206 Warning: unaligning (T0289)G179 because of BadResidue code BAD_PEPTIDE in next template residue (1m4lA)D273 Warning: unaligning (T0289)P180 because of BadResidue code BAD_PEPTIDE at template residue (1m4lA)D273 T0289 4 :CVAEEPIKKIAIFGGTHGNEL 1m4lA 53 :STGGSNRPAIWIDLGIHSREW T0289 25 :TGVFLVTHWLKNGAEVHR 1m4lA 78 :TGVWFAKKFTEDYGQDPS T0289 43 :AGLE 1m4lA 101 :DSMD T0289 47 :VKPFITNPRAVEKCT 1m4lA 106 :FLEIVTNPDGFAFTH T0289 62 :RYI 1m4lA 124 :RLW T0289 65 :DCDLNRVFDLEN 1m4lA 140 :GVDANRNWDAGF T0289 77 :LSKEMSEDL 1m4lA 157 :SSSPCSETY T0289 87 :YEVRRAQEINHLF 1m4lA 174 :VEVKSIVDFVKDH T0289 106 :DAYDVVFDLH 1m4lA 187 :GNFKAFLSIH T0289 118 :T 1m4lA 199 :S T0289 124 :TLIL 1m4lA 201 :LLLY T0289 130 :SRNDFLIQMFHYIKTCM 1m4lA 214 :PDKTELNQVAKSAVAAL T0289 147 :APLPCS 1m4lA 234 :YGTSYK T0289 163 :YATTRSIAKYPVGIEV 1m4lA 256 :DWSYNQGIKYSFTFEL T0289 181 :Q 1m4lA 274 :T T0289 182 :PHGVL 1m4lA 276 :RYGFL T0289 188 :ADILDQMRRMLKHALDFI 1m4lA 287 :IPTAQETWLGVLTIMEHT Number of specific fragments extracted= 17 number of extra gaps= 3 total=799 Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dtdA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1dtdA expands to /projects/compbio/data/pdb/1dtd.pdb.gz 1dtdA:# T0289 read from 1dtdA/merged-good-all-a2m # 1dtdA read from 1dtdA/merged-good-all-a2m # adding 1dtdA to template set # found chain 1dtdA in template set Warning: unaligning (T0289)N116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dtdA)Y554 Warning: unaligning (T0289)T117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dtdA)Y554 Warning: unaligning (T0289)T124 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dtdA)Y562 Warning: unaligning (T0289)L125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dtdA)Y562 Warning: unaligning (T0289)I176 because of BadResidue code BAD_PEPTIDE in next template residue (1dtdA)E626 Warning: unaligning (T0289)E177 because of BadResidue code BAD_PEPTIDE at template residue (1dtdA)E626 T0289 5 :VAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1dtdA 409 :STGGDKPAIWLDAGIHAREWVTQATALWTANKIVSDY T0289 42 :RAGLEVKPF 1dtdA 455 :LDALDIFLL T0289 51 :ITNPRAVEKC 1dtdA 465 :VTNPDGYVFS T0289 65 :DCDLNRVFDL 1dtdA 496 :GVDPNRNWDA T0289 75 :ENLS 1dtdA 524 :PSAN T0289 85 :LPYEV 1dtdA 528 :SEVEV T0289 93 :QEINHLF 1dtdA 533 :KSIVDFI T0289 102 :KNSD 1dtdA 540 :KSHG T0289 107 :AYDVVFDLH 1dtdA 544 :KVKAFIILH T0289 118 :TSNMGC 1dtdA 555 :SQLLMF T0289 126 :ILEDSRNDFLIQMFHYIKTCM 1dtdA 563 :GYKCTKLDDFDELSEVAQKAA T0289 147 :APLPCSVY 1dtdA 592 :TKYKVGPI T0289 156 :IEHPSLKYATTRSIAKY 1dtdA 604 :YQASGGSIDWSYDYGIK T0289 173 :PVG 1dtdA 622 :SFA T0289 178 :V 1dtdA 627 :L T0289 180 :PQPHGVLRADILDQMRRMLKHALDFI 1dtdA 631 :GRYGFLLPARQILPTAEETWLGLKAI T0289 206 :QRFN 1dtdA 658 :EHVR Number of specific fragments extracted= 17 number of extra gaps= 3 total=816 Number of alignments=49 # 1dtdA read from 1dtdA/merged-good-all-a2m # found chain 1dtdA in template set Warning: unaligning (T0289)N116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dtdA)Y554 Warning: unaligning (T0289)T117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dtdA)Y554 Warning: unaligning (T0289)T124 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dtdA)Y562 Warning: unaligning (T0289)L125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dtdA)Y562 Warning: unaligning (T0289)I176 because of BadResidue code BAD_PEPTIDE in next template residue (1dtdA)E626 Warning: unaligning (T0289)E177 because of BadResidue code BAD_PEPTIDE at template residue (1dtdA)E626 T0289 4 :CVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 1dtdA 408 :FSTGGDKPAIWLDAGIHAREWVTQATALWTANKIVSDY T0289 42 :RAGLEVKPF 1dtdA 455 :LDALDIFLL T0289 51 :ITNPRAVEKC 1dtdA 465 :VTNPDGYVFS T0289 61 :TRYI 1dtdA 481 :WRKT T0289 66 :C 1dtdA 496 :G T0289 67 :DLNRVFDLENLSKEMS 1dtdA 498 :DPNRNWDAGFGGPGAS T0289 83 :EDLPYEVRRAQEINHLF 1dtdA 526 :ANSEVEVKSIVDFIKSH T0289 106 :DAYDVVFDLH 1dtdA 543 :GKVKAFIILH T0289 118 :TSNMGC 1dtdA 555 :SQLLMF T0289 126 :ILEDSRNDFLI 1dtdA 563 :GYKCTKLDDFD T0289 137 :QMFHYIKTCMA 1dtdA 577 :EVAQKAAQSLS T0289 148 :PLPCSVYL 1dtdA 591 :GTKYKVGP T0289 156 :IEHPSLKYATTRSIAK 1dtdA 604 :YQASGGSIDWSYDYGI T0289 172 :YPVG 1dtdA 621 :YSFA T0289 178 :V 1dtdA 627 :L T0289 179 :GPQPHG 1dtdA 631 :GRYGFL T0289 186 :LR 1dtdA 637 :LP T0289 188 :ADILDQMRRMLKHALDFIQR 1dtdA 643 :LPTAEETWLGLKAIMEHVRD Number of specific fragments extracted= 18 number of extra gaps= 3 total=834 Number of alignments=50 # 1dtdA read from 1dtdA/merged-good-all-a2m # found chain 1dtdA in template set Warning: unaligning (T0289)N116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dtdA)Y554 Warning: unaligning (T0289)T117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dtdA)Y554 Warning: unaligning (T0289)E128 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dtdA)Y562 Warning: unaligning (T0289)D129 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dtdA)Y562 Warning: unaligning (T0289)I176 because of BadResidue code BAD_PEPTIDE in next template residue (1dtdA)E626 Warning: unaligning (T0289)E177 because of BadResidue code BAD_PEPTIDE at template residue (1dtdA)E626 Warning: unaligning (T0289)G179 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dtdA)D629 Warning: unaligning (T0289)P180 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dtdA)D629 T0289 5 :VAEEPIKKIAIFGGTHGNEL 1dtdA 409 :STGGDKPAIWLDAGIHAREW T0289 25 :TGVFLVTHWLKNGAEVHR 1dtdA 433 :TALWTANKIVSDYGKDPS T0289 43 :AGLE 1dtdA 456 :DALD T0289 47 :VKPFITNPRAVEKCT 1dtdA 461 :FLLPVTNPDGYVFSQ T0289 65 :DCDLNRVFDLENLSKE 1dtdA 496 :GVDPNRNWDAGFGGPG T0289 81 :MSEDLPYEVRRAQEINHLF 1dtdA 524 :PSANSEVEVKSIVDFIKSH T0289 106 :DAYDVVFDLH 1dtdA 543 :GKVKAFIILH T0289 118 :T 1dtdA 555 :S T0289 123 :CTLIL 1dtdA 556 :QLLMF T0289 130 :SRND 1dtdA 563 :GYKC T0289 134 :FLIQMFHYIKTCMAPLPCS 1dtdA 578 :VAQKAAQSLSRLHGTKYKV T0289 164 :ATTRSIAKYPVG 1dtdA 613 :WSYDYGIKYSFA T0289 178 :V 1dtdA 627 :L T0289 181 :Q 1dtdA 630 :T T0289 182 :PHGVL 1dtdA 632 :RYGFL T0289 187 :R 1dtdA 638 :P T0289 188 :ADILDQMRRMLKHALDFIQRF 1dtdA 643 :LPTAEETWLGLKAIMEHVRDH Number of specific fragments extracted= 17 number of extra gaps= 4 total=851 Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ctc/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2ctc expands to /projects/compbio/data/pdb/2ctc.pdb.gz 2ctc:Warning: there is no chain 2ctc will retry with 2ctcA # T0289 read from 2ctc/merged-good-all-a2m # 2ctc read from 2ctc/merged-good-all-a2m # adding 2ctc to template set # found chain 2ctc in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (2ctc)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (2ctc)Y198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (2ctc)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (2ctc)Y206 T0289 4 :CVAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 2ctc 53 :STGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDY T0289 42 :RAGLEVKPF 2ctc 100 :LDSMDIFLE T0289 51 :ITNPRAVEKC 2ctc 110 :VTNPDGFAFT T0289 61 :T 2ctc 129 :T T0289 65 :DCDLNRVFDL 2ctc 140 :GVDANRNWDA T0289 75 :ENLSKEMS 2ctc 167 :GKYANSEV T0289 88 :EV 2ctc 175 :EV T0289 93 :QEINHLF 2ctc 177 :KSIVDFV T0289 102 :KNSD 2ctc 184 :KDHG T0289 107 :AYDVVFDLH 2ctc 188 :NFKAFLSIH T0289 118 :TSNMGC 2ctc 199 :SQLLLY T0289 126 :ILEDSRNDFLIQMFHYIKTCM 2ctc 207 :GYTTQSIPDKTELNQVAKSAV T0289 147 :APLPCSVYL 2ctc 234 :YGTSYKYGS T0289 156 :IEHPSLKYATTRSIAKY 2ctc 248 :YQASGGSIDWSYNQGIK T0289 173 :PVGIEV 2ctc 266 :SFTFEL T0289 179 :GPQ 2ctc 275 :GRY T0289 183 :HGVLR 2ctc 278 :GFLLP T0289 188 :ADILDQMRRMLKHALDFI 2ctc 287 :IPTAQETWLGVLTIMEHT Number of specific fragments extracted= 18 number of extra gaps= 2 total=869 Number of alignments=52 # 2ctc read from 2ctc/merged-good-all-a2m # found chain 2ctc in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (2ctc)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (2ctc)Y198 Warning: unaligning (T0289)T124 because of BadResidue code BAD_PEPTIDE in next template residue (2ctc)Y206 Warning: unaligning (T0289)L125 because of BadResidue code BAD_PEPTIDE at template residue (2ctc)Y206 T0289 5 :VAEEPIKKIAIFGGTHGNELTGVFLVTHWLKNGAEVH 2ctc 54 :TGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDY T0289 42 :RAGLEVKPF 2ctc 100 :LDSMDIFLE T0289 51 :ITNPRAVEKC 2ctc 110 :VTNPDGFAFT T0289 61 :TRYI 2ctc 126 :WRKT T0289 66 :C 2ctc 140 :G T0289 67 :DLNRVFDLENLSKEMS 2ctc 142 :DANRNWDAGFGKAGAS T0289 83 :EDLPYEVRRAQEINHLF 2ctc 170 :ANSEVEVKSIVDFVKDH T0289 106 :DAYDVVFDLH 2ctc 187 :GNFKAFLSIH T0289 118 :TSNMGC 2ctc 199 :SQLLLY T0289 126 :ILEDSRNDFLI 2ctc 207 :GYTTQSIPDKT T0289 137 :QMFHYIKTCM 2ctc 225 :SAVEALKSLY T0289 148 :PLPCSVYL 2ctc 235 :GTSYKYGS T0289 156 :IEHPSLKYATTRSIAK 2ctc 248 :YQASGGSIDWSYNQGI T0289 172 :YPVGIEV 2ctc 265 :YSFTFEL T0289 179 :GPQPHGVLRADI 2ctc 275 :GRYGFLLPASQI T0289 191 :LDQMRRMLKHALDFI 2ctc 290 :AQETWLGVLTIMEHT Number of specific fragments extracted= 16 number of extra gaps= 2 total=885 Number of alignments=53 # 2ctc read from 2ctc/merged-good-all-a2m # found chain 2ctc in template set Warning: unaligning (T0289)N116 because of BadResidue code BAD_PEPTIDE in next template residue (2ctc)Y198 Warning: unaligning (T0289)T117 because of BadResidue code BAD_PEPTIDE at template residue (2ctc)Y198 Warning: unaligning (T0289)E128 because of BadResidue code BAD_PEPTIDE in next template residue (2ctc)Y206 Warning: unaligning (T0289)D129 because of BadResidue code BAD_PEPTIDE at template residue (2ctc)Y206 Warning: unaligning (T0289)G179 because of BadResidue code BAD_PEPTIDE in next template residue (2ctc)D273 Warning: unaligning (T0289)P180 because of BadResidue code BAD_PEPTIDE at template residue (2ctc)D273 T0289 4 :CVAEEPIKKIAIFGGTHGNEL 2ctc 53 :STGGSNRPAIWIDLGIHSREW T0289 25 :TGVFLVTHWLKNGAEVHR 2ctc 78 :TGVWFAKKFTEDYGQDPS T0289 43 :AGLE 2ctc 101 :DSMD T0289 47 :VKPFITNPRAVEKCT 2ctc 106 :FLEIVTNPDGFAFTH T0289 62 :RYI 2ctc 124 :RLW T0289 65 :DCDLNRVFDLENLSKE 2ctc 140 :GVDANRNWDAGFGKAG T0289 81 :MSEDLPYEVRRAQEINHLF 2ctc 168 :KYANSEVEVKSIVDFVKDH T0289 106 :DAYDVVFDLH 2ctc 187 :GNFKAFLSIH T0289 118 :T 2ctc 199 :S T0289 123 :CTLIL 2ctc 200 :QLLLY T0289 130 :SRNDFLIQMFHYIKTCM 2ctc 214 :PDKTELNQVAKSAVEAL T0289 147 :APLPCS 2ctc 234 :YGTSYK T0289 164 :ATTRSIAKYPVGIEV 2ctc 257 :WSYNQGIKYSFTFEL T0289 181 :Q 2ctc 274 :T T0289 182 :PHGVL 2ctc 276 :RYGFL T0289 187 :R 2ctc 282 :P T0289 188 :ADILDQMRRMLKHALDFI 2ctc 287 :IPTAQETWLGVLTIMEHT Number of specific fragments extracted= 17 number of extra gaps= 3 total=902 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xovA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xovA expands to /projects/compbio/data/pdb/1xov.pdb.gz 1xovA:# T0289 read from 1xovA/merged-good-all-a2m # 1xovA read from 1xovA/merged-good-all-a2m # adding 1xovA to template set # found chain 1xovA in template set Warning: unaligning (T0289)P9 because first residue in template chain is (1xovA)A0 Warning: unaligning (T0289)S119 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xovA)G85 Warning: unaligning (T0289)N120 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xovA)G85 T0289 10 :IKKIAIFGG 1xovA 1 :MSNYSMSRG T0289 21 :GNE 1xovA 16 :GAE T0289 24 :LTGVFLVTHWLKNGAEVH 1xovA 21 :LSEIKEAEKVLNAASDEL T0289 42 :RAGLEVKPF 1xovA 40 :REGHNVKTF T0289 77 :LSKEMS 1xovA 50 :DRTSTT T0289 88 :EVRRAQEINHLF 1xovA 56 :QSANLNKIVNWH T0289 104 :SDDAYDVVFDLH 1xovA 68 :NANPADVHISVH T0289 116 :NTT 1xovA 81 :NAG T0289 121 :MGCTLIL 1xovA 86 :TGVEVWY T0289 129 :DSRNDFLIQMFHYIKTCM 1xovA 93 :YAGDEKGRKLAVEISAKM T0289 147 :APLPCSVYLIEHP 1xovA 114 :LGLPNRGAKATKD T0289 163 :YATTRSIAKYPVGIEVGPQPH 1xovA 127 :LRFLNSTKGTAVLLEVCFVDR T0289 192 :DQMRRML 1xovA 148 :KEDANAI T0289 199 :KHALDFIQR 1xovA 161 :DKLGIAIAE T0289 208 :FNEGKEFP 1xovA 171 :LTGKTVAA T0289 216 :PC 1xovA 180 :NP T0289 218 :AIDVYKI 1xovA 250 :GRIKVRI T0289 233 :NESGDVAAVIHP 1xovA 257 :KSAKDLRIPVWN T0289 245 :NLQDQDWKPLHPGDPVFVSLDGK 1xovA 271 :KLNSGKIKWYSPGTKLSWYDNKK T0289 268 :VIPLGG 1xovA 297 :ELWYEK T0289 274 :DCTVYPVFV 1xovA 304 :GWYYTANYF Number of specific fragments extracted= 21 number of extra gaps= 1 total=923 Number of alignments=55 # 1xovA read from 1xovA/merged-good-all-a2m # found chain 1xovA in template set Warning: unaligning (T0289)P9 because first residue in template chain is (1xovA)A0 Warning: unaligning (T0289)S119 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xovA)G85 Warning: unaligning (T0289)N120 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xovA)G85 Warning: unaligning (T0289)K212 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xovA)N243 Warning: unaligning (T0289)E213 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xovA)G244 T0289 10 :IKKIAIFGG 1xovA 1 :MSNYSMSRG T0289 21 :GNE 1xovA 16 :GAE T0289 24 :LTGVFLVTHWLKNGAEVH 1xovA 21 :LSEIKEAEKVLNAASDEL T0289 42 :RAGLEVKPF 1xovA 40 :REGHNVKTF T0289 51 :I 1xovA 50 :D T0289 75 :ENLSK 1xovA 51 :RTSTT T0289 88 :EVRRAQEINHLFGP 1xovA 56 :QSANLNKIVNWHNA T0289 106 :DAYDVVFDLH 1xovA 70 :NPADVHISVH T0289 116 :NTT 1xovA 81 :NAG T0289 121 :MGCTLILE 1xovA 86 :TGVEVWYY T0289 130 :SRNDFLIQMFHYIKTCMA 1xovA 94 :AGDEKGRKLAVEISAKMA T0289 148 :PLPCSVYLIEHP 1xovA 115 :GLPNRGAKATKD T0289 163 :YATTRSIAKYPVGIEVGPQP 1xovA 127 :LRFLNSTKGTAVLLEVCFVD T0289 187 :RADILDQM 1xovA 147 :RKEDANAI T0289 195 :R 1xovA 160 :Y T0289 199 :KHALDFI 1xovA 161 :DKLGIAI T0289 206 :QRFNEG 1xovA 169 :EGLTGK T0289 214 :FPPCAIDV 1xovA 245 :KKDAKGRI T0289 224 :IME 1xovA 253 :KVR T0289 232 :RNESGDVAAVIHP 1xovA 256 :IKSAKDLRIPVWN T0289 245 :NLQDQDWKPLHPGDPVFVSL 1xovA 271 :KLNSGKIKWYSPGTKLSWYD T0289 265 :DGKVIPLGGDCTVYPV 1xovA 294 :GYLELWYEKDGWYYTA Number of specific fragments extracted= 22 number of extra gaps= 2 total=945 Number of alignments=56 # 1xovA read from 1xovA/merged-good-all-a2m # found chain 1xovA in template set Warning: unaligning (T0289)P9 because first residue in template chain is (1xovA)A0 Warning: unaligning (T0289)S119 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xovA)G85 Warning: unaligning (T0289)N120 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xovA)G85 Warning: unaligning (T0289)D229 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xovA)M194 Warning: unaligning (T0289)S309 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xovA)N243 T0289 10 :IKKIAIFGG 1xovA 1 :MSNYSMSRG T0289 24 :LTGVFLVTHWLKNGAEVHR 1xovA 21 :LSEIKEAEKVLNAASDELK T0289 43 :AGLEVKPFIT 1xovA 41 :EGHNVKTFID T0289 78 :S 1xovA 51 :R T0289 81 :MSEDLPYEVRRAQEINHL 1xovA 52 :TSTTQSANLNKIVNWHNA T0289 106 :DAYDVVFDLHNTT 1xovA 70 :NPADVHISVHLNA T0289 121 :MGCTLILEDSRNDFLIQMFHYIKT 1xovA 86 :TGVEVWYYAGDEKGRKLAVEISAK T0289 145 :CMAPLPCSVYLIE 1xovA 113 :ALGLPNRGAKATK T0289 162 :KYATTRSIAKYPVGIEVGPQ 1xovA 126 :DLRFLNSTKGTAVLLEVCFV T0289 186 :LRADILDQM 1xovA 146 :DRKEDANAI T0289 197 :MLKHALDFIQRFNEGKEF 1xovA 159 :MYDKLGIAIAEGLTGKTV T0289 215 :PPCAIDVYKIMEKV 1xovA 179 :KNPNRHSGAVVDSV T0289 230 :YPRNESGDVAAVIHPNLQ 1xovA 196 :SKMDFKSSPIKMYKAGSS T0289 259 :PVFVSLDGKV 1xovA 214 :LLVYEHNKYW T0289 269 :IPLGG 1xovA 226 :AYIND T0289 298 :TKLTLNAKSIR 1xovA 231 :KLCYIYKSFCI Number of specific fragments extracted= 16 number of extra gaps= 3 total=961 Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nsa/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0289/1nsa/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0289/1nsa/merged-good-all-a2m.gz for input Trying 1nsa/merged-good-all-a2m Error: Couldn't open file 1nsa/merged-good-all-a2m or 1nsa/merged-good-all-a2m.gz for input # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0289//projects/compbio/experiments/protein-predict/casp7/T0289/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0289//projects/compbio/experiments/protein-predict/casp7/T0289/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0289/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0289/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0289)G17.CA, (T0289)F50.CB) [> 3.8921 = 6.4868 < 8.4328] w=1.0000 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)P49.CB) [> 3.2930 = 5.4883 < 7.1348] w=1.0000 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)K48.CB) [> 3.9398 = 6.5663 < 8.5361] w=1.0000 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)V47.CB) [> 4.1363 = 6.8939 < 8.9621] w=1.0000 to align # Constraint # added constraint: constraint((T0289)I13.CB, (T0289)V47.CB) [> 3.2813 = 5.4688 < 7.1094] w=1.0000 to align # Constraint # added constraint: constraint((T0289)G17.CA, (T0289)I51.CB) [> 3.8770 = 6.4616 < 8.4001] w=0.9811 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)V174.CB) [> 4.5362 = 7.5604 < 9.8285] w=0.9810 to align # Constraint # added constraint: constraint((T0289)G17.CA, (T0289)H115.CB) [> 4.6042 = 7.6736 < 9.9757] w=0.9772 to align # Constraint # added constraint: constraint((T0289)G17.CA, (T0289)L114.CB) [> 2.6961 = 4.4935 < 5.8415] w=0.9772 to align # Constraint # added constraint: constraint((T0289)G17.CA, (T0289)D113.CB) [> 3.9703 = 6.6171 < 8.6023] w=0.9772 to align # Constraint # added constraint: constraint((T0289)F16.CB, (T0289)L114.CB) [> 4.1380 = 6.8967 < 8.9657] w=0.9772 to align # Constraint # added constraint: constraint((T0289)F16.CB, (T0289)D113.CB) [> 3.0995 = 5.1659 < 6.7156] w=0.9772 to align # Constraint # added constraint: constraint((T0289)F16.CB, (T0289)F112.CB) [> 4.4962 = 7.4936 < 9.7417] w=0.9772 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)L114.CB) [> 4.2186 = 7.0310 < 9.1403] w=0.9772 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)F112.CB) [> 3.0686 = 5.1144 < 6.6487] w=0.9772 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)V111.CB) [> 2.8042 = 4.6736 < 6.0757] w=0.9772 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)V110.CB) [> 4.1400 = 6.9000 < 8.9699] w=0.9772 to align # Constraint # added constraint: constraint((T0289)I13.CB, (T0289)V110.CB) [> 2.6556 = 4.4261 < 5.7539] w=0.9772 to align # Constraint # added constraint: constraint((T0289)K12.CB, (T0289)D109.CB) [> 3.7700 = 6.2834 < 8.1684] w=0.9772 to align # Constraint # added constraint: constraint((T0289)K12.CB, (T0289)Y108.CB) [> 2.9129 = 4.8548 < 6.3113] w=0.9772 to align # Constraint # added constraint: constraint((T0289)G18.CA, (T0289)L114.CB) [> 4.2216 = 7.0361 < 9.1469] w=0.9772 to align # Constraint # added constraint: constraint((T0289)D109.CB, (T0289)Y172.CB) [> 4.0237 = 6.7061 < 8.7179] w=0.9772 to align # Constraint # added constraint: constraint((T0289)V110.CB, (T0289)P173.CB) [> 4.4492 = 7.4153 < 9.6399] w=0.9772 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)P173.CB) [> 2.5771 = 4.2952 < 5.5838] w=0.9772 to align # Constraint # added constraint: constraint((T0289)F112.CB, (T0289)P173.CB) [> 4.4713 = 7.4521 < 9.6877] w=0.9772 to align # Constraint # added constraint: constraint((T0289)F112.CB, (T0289)V174.CB) [> 3.1648 = 5.2747 < 6.8571] w=0.9772 to align # Constraint # added constraint: constraint((T0289)F112.CB, (T0289)G175.CA) [> 3.7369 = 6.2281 < 8.0965] w=0.9772 to align # Constraint # added constraint: constraint((T0289)D113.CB, (T0289)V174.CB) [> 4.4646 = 7.4411 < 9.6734] w=0.9772 to align # Constraint # added constraint: constraint((T0289)D113.CB, (T0289)G175.CA) [> 2.8018 = 4.6696 < 6.0705] w=0.9772 to align # Constraint # added constraint: constraint((T0289)L114.CB, (T0289)G175.CA) [> 4.2959 = 7.1598 < 9.3078] w=0.9772 to align # Constraint # added constraint: constraint((T0289)L114.CB, (T0289)V178.CB) [> 3.9133 = 6.5222 < 8.4788] w=0.9772 to align # Constraint # added constraint: constraint((T0289)H115.CB, (T0289)G175.CA) [> 3.9210 = 6.5350 < 8.4955] w=0.9772 to align # Constraint # added constraint: constraint((T0289)H115.CB, (T0289)V178.CB) [> 4.0494 = 6.7490 < 8.7737] w=0.9772 to align # Constraint # added constraint: constraint((T0289)G18.CA, (T0289)I51.CB) [> 3.1898 = 5.3163 < 6.9112] w=0.9622 to align # Constraint # added constraint: constraint((T0289)G17.CA, (T0289)T52.CB) [> 3.3878 = 5.6463 < 7.3401] w=0.9622 to align # Constraint # added constraint: constraint((T0289)G17.CA, (T0289)G26.CA) [> 3.3871 = 5.6451 < 7.3386] w=0.9433 to align # Constraint # added constraint: constraint((T0289)G18.CA, (T0289)N53.CB) [> 3.4376 = 5.7293 < 7.4482] w=0.9433 to align # Constraint # added constraint: constraint((T0289)I13.CB, (T0289)E46.CB) [> 4.1774 = 6.9623 < 9.0509] w=0.9424 to align # Constraint # added constraint: constraint((T0289)G18.CA, (T0289)T52.CB) [> 3.0901 = 5.1501 < 6.6951] w=0.9394 to align # Constraint # added constraint: constraint((T0289)F16.CB, (T0289)T52.CB) [> 3.1565 = 5.2608 < 6.8390] w=0.9394 to align # Constraint # added constraint: constraint((T0289)I10.CB, (T0289)G44.CA) [> 3.4810 = 5.8016 < 7.5421] w=0.9388 to align # Constraint # added constraint: constraint((T0289)D109.CB, (T0289)K171.CB) [> 3.9009 = 6.5015 < 8.4519] w=0.9388 to align # Constraint # added constraint: constraint((T0289)K12.CB, (T0289)E46.CB) [> 2.7504 = 4.5840 < 5.9593] w=0.9232 to align # Constraint # added constraint: constraint((T0289)I13.CB, (T0289)L45.CB) [> 3.4697 = 5.7828 < 7.5176] w=0.9232 to align # Constraint # added constraint: constraint((T0289)K12.CB, (T0289)L45.CB) [> 3.9461 = 6.5768 < 8.5499] w=0.9232 to align # Constraint # added constraint: constraint((T0289)G18.CA, (T0289)V57.CB) [> 4.0532 = 6.7553 < 8.7819] w=0.9205 to align # Constraint # added constraint: constraint((T0289)T19.CB, (T0289)T52.CB) [> 2.6738 = 4.4563 < 5.7932] w=0.9205 to align # Constraint # added constraint: constraint((T0289)T19.CB, (T0289)N53.CB) [> 3.2694 = 5.4490 < 7.0838] w=0.9205 to align # Constraint # added constraint: constraint((T0289)T19.CB, (T0289)D113.CB) [> 4.0434 = 6.7390 < 8.7607] w=0.9205 to align # Constraint # added constraint: constraint((T0289)T19.CB, (T0289)H115.CB) [> 4.3780 = 7.2966 < 9.4856] w=0.9205 to align # Constraint # added constraint: constraint((T0289)H20.CB, (T0289)N53.CB) [> 4.1174 = 6.8624 < 8.9211] w=0.9205 to align # Constraint # added constraint: constraint((T0289)H20.CB, (T0289)A56.CB) [> 4.4116 = 7.3527 < 9.5585] w=0.9205 to align # Constraint # added constraint: constraint((T0289)H20.CB, (T0289)H115.CB) [> 3.7734 = 6.2890 < 8.1757] w=0.9205 to align # Constraint # added constraint: constraint((T0289)G21.CA, (T0289)N53.CB) [> 3.1160 = 5.1933 < 6.7513] w=0.9205 to align # Constraint # added constraint: constraint((T0289)G21.CA, (T0289)A56.CB) [> 2.4478 = 4.0796 < 5.3035] w=0.9205 to align # Constraint # added constraint: constraint((T0289)G21.CA, (T0289)V57.CB) [> 2.8984 = 4.8307 < 6.2799] w=0.9205 to align # Constraint # added constraint: constraint((T0289)E23.CB, (T0289)H115.CB) [> 3.3089 = 5.5148 < 7.1692] w=0.9205 to align # Constraint # added constraint: constraint((T0289)T25.CB, (T0289)V178.CB) [> 3.1689 = 5.2815 < 6.8660] w=0.9205 to align # Constraint # added constraint: constraint((T0289)G26.CA, (T0289)L114.CB) [> 3.1655 = 5.2758 < 6.8586] w=0.9205 to align # Constraint # added constraint: constraint((T0289)H115.CB, (T0289)E177.CB) [> 3.0292 = 5.0486 < 6.5631] w=0.9196 to align # Constraint # added constraint: constraint((T0289)H115.CB, (T0289)I176.CB) [> 3.8586 = 6.4310 < 8.3603] w=0.9196 to align # Constraint # added constraint: constraint((T0289)L114.CB, (T0289)I176.CB) [> 2.9732 = 4.9552 < 6.4418] w=0.9196 to align # Constraint # added constraint: constraint((T0289)D113.CB, (T0289)I176.CB) [> 4.2560 = 7.0934 < 9.2214] w=0.9196 to align # Constraint # added constraint: constraint((T0289)F112.CB, (T0289)I176.CB) [> 3.7486 = 6.2476 < 8.1219] w=0.9196 to align # Constraint # added constraint: constraint((T0289)K12.CB, (T0289)A107.CB) [> 3.3318 = 5.5530 < 7.2189] w=0.9196 to align # Constraint # added constraint: constraint((T0289)K11.CB, (T0289)D109.CB) [> 2.9553 = 4.9255 < 6.4032] w=0.9196 to align # Constraint # added constraint: constraint((T0289)V178.CB, (T0289)M194.CB) [> 3.8965 = 6.4942 < 8.4424] w=0.9007 to align # Constraint # added constraint: constraint((T0289)K11.CB, (T0289)L45.CB) [> 3.0861 = 5.1436 < 6.6866] w=0.9004 to align # Constraint # added constraint: constraint((T0289)I10.CB, (T0289)L45.CB) [> 3.4996 = 5.8327 < 7.5825] w=0.9004 to align # Constraint # added constraint: constraint((T0289)F16.CB, (T0289)P49.CB) [> 4.0852 = 6.8087 < 8.8513] w=0.8851 to align # Constraint # added constraint: constraint((T0289)V71.CB, (T0289)V89.CB) [> 2.8057 = 4.6761 < 6.0790] w=0.8821 to align # Constraint # added constraint: constraint((T0289)K11.CB, (T0289)G44.CA) [> 4.2830 = 7.1383 < 9.2798] w=0.8821 to align # Constraint # added constraint: constraint((T0289)K12.CB, (T0289)V47.CB) [> 4.2463 = 7.0772 < 9.2004] w=0.8814 to align # Constraint # added constraint: constraint((T0289)N22.CB, (T0289)C60.CB) [> 3.0657 = 5.1096 < 6.6425] w=0.8630 to align # Constraint # added constraint: constraint((T0289)G21.CA, (T0289)C60.CB) [> 3.3930 = 5.6550 < 7.3515] w=0.8630 to align # Constraint # added constraint: constraint((T0289)F72.CB, (T0289)A164.CB) [> 3.1724 = 5.2874 < 6.8736] w=0.8630 to align # Constraint # added constraint: constraint((T0289)H20.CB, (T0289)D67.CB) [> 4.6887 = 7.8146 < 10.1590] w=0.8629 to align # Constraint # added constraint: constraint((T0289)N53.CB, (T0289)E88.CB) [> 3.5141 = 5.8568 < 7.6139] w=0.8629 to align # Constraint # added constraint: constraint((T0289)T19.CB, (T0289)L68.CB) [> 2.8706 = 4.7844 < 6.2197] w=0.8629 to align # Constraint # added constraint: constraint((T0289)T19.CB, (T0289)N69.CB) [> 3.1851 = 5.3084 < 6.9010] w=0.8629 to align # Constraint # added constraint: constraint((T0289)H20.CB, (T0289)L68.CB) [> 4.3177 = 7.1961 < 9.3549] w=0.8629 to align # Constraint # added constraint: constraint((T0289)H20.CB, (T0289)N69.CB) [> 3.9977 = 6.6628 < 8.6617] w=0.8629 to align # Constraint # added constraint: constraint((T0289)T52.CB, (T0289)L68.CB) [> 4.1129 = 6.8548 < 8.9113] w=0.8629 to align # Constraint # added constraint: constraint((T0289)N53.CB, (T0289)L68.CB) [> 3.3654 = 5.6090 < 7.2917] w=0.8629 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)F112.CB) [> 4.2881 = 7.1468 < 9.2908] w=0.8622 to align # Constraint # added constraint: constraint((T0289)K11.CB, (T0289)E46.CB) [> 4.2602 = 7.1003 < 9.2304] w=0.8621 to align # Constraint # added constraint: constraint((T0289)G18.CA, (T0289)H115.CB) [> 4.5252 = 7.5421 < 9.8047] w=0.8620 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)Y108.CB) [> 3.1657 = 5.2762 < 6.8591] w=0.8620 to align # Constraint # added constraint: constraint((T0289)I13.CB, (T0289)D109.CB) [> 3.9312 = 6.5520 < 8.5176] w=0.8620 to align # Constraint # added constraint: constraint((T0289)I13.CB, (T0289)Y108.CB) [> 4.2555 = 7.0924 < 9.2202] w=0.8620 to align # Constraint # added constraint: constraint((T0289)V110.CB, (T0289)Y172.CB) [> 3.0780 = 5.1300 < 6.6690] w=0.8430 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)K48.CB) [> 3.0041 = 5.0068 < 6.5088] w=0.8275 to align # Constraint # added constraint: constraint((T0289)L68.CB, (T0289)E88.CB) [> 3.3720 = 5.6200 < 7.3060] w=0.8245 to align # Constraint # added constraint: constraint((T0289)G18.CA, (T0289)V27.CB) [> 3.2992 = 5.4987 < 7.1483] w=0.8083 to align # Constraint # added constraint: constraint((T0289)I10.CB, (T0289)E46.CB) [> 3.0828 = 5.1380 < 6.6794] w=0.8054 to align # Constraint # added constraint: constraint((T0289)F28.CB, (T0289)L191.CB) [> 3.3748 = 5.6246 < 7.3120] w=0.8053 to align # Constraint # added constraint: constraint((T0289)E23.CB, (T0289)V178.CB) [> 4.4165 = 7.3607 < 9.5690] w=0.8053 to align # Constraint # added constraint: constraint((T0289)T52.CB, (T0289)E88.CB) [> 3.6429 = 6.0716 < 7.8930] w=0.8050 to align # Constraint # added constraint: constraint((T0289)I13.CB, (T0289)V111.CB) [> 4.5390 = 7.5651 < 9.8346] w=0.8050 to align # Constraint # added constraint: constraint((T0289)L29.CB, (T0289)M194.CB) [> 3.8572 = 6.4287 < 8.3573] w=0.8049 to align # Constraint # added constraint: constraint((T0289)V30.CB, (T0289)F50.CB) [> 4.3164 = 7.1940 < 9.3522] w=0.7900 to align # Constraint # added constraint: constraint((T0289)V110.CB, (T0289)I205.CB) [> 3.1069 = 5.1781 < 6.7316] w=0.7861 to align # Constraint # added constraint: constraint((T0289)F72.CB, (T0289)V89.CB) [> 3.7935 = 6.3224 < 8.2192] w=0.7861 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)Y172.CB) [> 4.2519 = 7.0866 < 9.2126] w=0.7855 to align # Constraint # added constraint: constraint((T0289)G17.CA, (T0289)V27.CB) [> 3.7468 = 6.2447 < 8.1181] w=0.7855 to align # Constraint # added constraint: constraint((T0289)V110.CB, (T0289)K171.CB) [> 4.1810 = 6.9683 < 9.0588] w=0.7854 to align # Constraint # added constraint: constraint((T0289)F99.CB, (T0289)Y108.CB) [> 3.4350 = 5.7249 < 7.4424] w=0.7798 to align # Constraint # added constraint: constraint((T0289)F16.CB, (T0289)F50.CB) [> 2.7389 = 4.5649 < 5.9343] w=0.7700 to align # Constraint # added constraint: constraint((T0289)K12.CB, (T0289)K48.CB) [> 3.9120 = 6.5199 < 8.4759] w=0.7700 to align # Constraint # added constraint: constraint((T0289)L24.CB, (T0289)C60.CB) [> 4.4362 = 7.3937 < 9.6118] w=0.7670 to align # Constraint # added constraint: constraint((T0289)T25.CB, (T0289)I190.CB) [> 3.8529 = 6.4215 < 8.3480] w=0.7669 to align # Constraint # added constraint: constraint((T0289)L68.CB, (T0289)V89.CB) [> 3.3619 = 5.6032 < 7.2842] w=0.7669 to align # Constraint # added constraint: constraint((T0289)H32.CB, (T0289)R195.CB) [> 3.5341 = 5.8902 < 7.6573] w=0.7669 to align # Constraint # added constraint: constraint((T0289)V30.CB, (T0289)L114.CB) [> 4.0205 = 6.7008 < 8.7111] w=0.7663 to align # Constraint # added constraint: constraint((T0289)G17.CA, (T0289)V30.CB) [> 3.3144 = 5.5241 < 7.1813] w=0.7663 to align # Constraint # added constraint: constraint((T0289)V30.CB, (T0289)P49.CB) [> 3.6119 = 6.0199 < 7.8259] w=0.7516 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)F50.CB) [> 4.3311 = 7.2185 < 9.3841] w=0.7508 to align # Constraint # added constraint: constraint((T0289)K11.CB, (T0289)A107.CB) [> 3.3276 = 5.5460 < 7.2098] w=0.7480 to align # Constraint # added constraint: constraint((T0289)I13.CB, (T0289)F112.CB) [> 4.3364 = 7.2273 < 9.3955] w=0.7470 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)V30.CB) [> 3.8948 = 6.4913 < 8.4387] w=0.7324 to align # Constraint # added constraint: constraint((T0289)V27.CB, (T0289)I51.CB) [> 3.1176 = 5.1960 < 6.7548] w=0.7288 to align # Constraint # added constraint: constraint((T0289)G26.CA, (T0289)V178.CB) [> 3.5606 = 5.9343 < 7.7146] w=0.7288 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)T166.CB) [> 3.3726 = 5.6210 < 7.3074] w=0.7288 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)K171.CB) [> 2.9295 = 4.8824 < 6.3472] w=0.7279 to align # Constraint # added constraint: constraint((T0289)L29.CB, (T0289)L114.CB) [> 3.8098 = 6.3497 < 8.2546] w=0.7096 to align # Constraint # added constraint: constraint((T0289)L29.CB, (T0289)L198.CB) [> 3.8239 = 6.3731 < 8.2851] w=0.7094 to align # Constraint # added constraint: constraint((T0289)L29.CB, (T0289)L191.CB) [> 3.5653 = 5.9422 < 7.7249] w=0.7093 to align # Constraint # added constraint: constraint((T0289)L34.CB, (T0289)P49.CB) [> 3.6879 = 6.1465 < 7.9904] w=0.7088 to align # Constraint # added constraint: constraint((T0289)L29.CB, (T0289)V178.CB) [> 4.1339 = 6.8899 < 8.9568] w=0.7087 to align # Constraint # added constraint: constraint((T0289)R70.CB, (T0289)S160.CB) [> 3.3930 = 5.6549 < 7.3514] w=0.6905 to align # Constraint # added constraint: constraint((T0289)F72.CB, (T0289)S160.CB) [> 3.1859 = 5.3099 < 6.9028] w=0.6905 to align # Constraint # added constraint: constraint((T0289)F72.CB, (T0289)L161.CB) [> 3.4257 = 5.7095 < 7.4223] w=0.6905 to align # Constraint # added constraint: constraint((T0289)D113.CB, (T0289)K162.CB) [> 3.2074 = 5.3456 < 6.9493] w=0.6905 to align # Constraint # added constraint: constraint((T0289)G21.CA, (T0289)K59.CB) [> 4.5948 = 7.6580 < 9.9554] w=0.6905 to align # Constraint # added constraint: constraint((T0289)V27.CB, (T0289)V57.CB) [> 4.1208 = 6.8680 < 8.9284] w=0.6904 to align # Constraint # added constraint: constraint((T0289)I10.CB, (T0289)A107.CB) [> 4.2221 = 7.0369 < 9.1480] w=0.6904 to align # Constraint # added constraint: constraint((T0289)N69.CB, (T0289)D113.CB) [> 4.6271 = 7.7119 < 10.0254] w=0.6901 to align # Constraint # added constraint: constraint((T0289)T19.CB, (T0289)E88.CB) [> 4.6234 = 7.7057 < 10.0174] w=0.6901 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)K171.CB) [> 4.6100 = 7.6833 < 9.9883] w=0.6895 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)V174.CB) [> 4.4796 = 7.4659 < 9.7057] w=0.6894 to align # Constraint # added constraint: constraint((T0289)N22.CB, (T0289)R62.CB) [> 3.3956 = 5.6593 < 7.3570] w=0.6712 to align # Constraint # added constraint: constraint((T0289)I13.CB, (T0289)L202.CB) [> 3.5728 = 5.9546 < 7.7410] w=0.6711 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)L198.CB) [> 4.4422 = 7.4037 < 9.6249] w=0.6711 to align # Constraint # added constraint: constraint((T0289)V110.CB, (T0289)A201.CB) [> 4.0793 = 6.7988 < 8.8384] w=0.6711 to align # Constraint # added constraint: constraint((T0289)T118.CB, (T0289)E177.CB) [> 2.3790 = 3.9649 < 5.1544] w=0.6709 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)Y172.CB) [> 4.1493 = 6.9155 < 8.9901] w=0.6706 to align # Constraint # added constraint: constraint((T0289)N69.CB, (T0289)L161.CB) [> 3.3842 = 5.6404 < 7.3325] w=0.6521 to align # Constraint # added constraint: constraint((T0289)N69.CB, (T0289)S160.CB) [> 3.8400 = 6.4000 < 8.3200] w=0.6521 to align # Constraint # added constraint: constraint((T0289)L74.CB, (T0289)A164.CB) [> 2.5044 = 4.1740 < 5.4262] w=0.6520 to align # Constraint # added constraint: constraint((T0289)H32.CB, (T0289)L191.CB) [> 3.4420 = 5.7366 < 7.4576] w=0.6517 to align # Constraint # added constraint: constraint((T0289)L24.CB, (T0289)L186.CB) [> 4.1445 = 6.9074 < 8.9797] w=0.6517 to align # Constraint # added constraint: constraint((T0289)I142.CB, (T0289)V174.CB) [> 4.1875 = 6.9791 < 9.0729] w=0.6514 to align # Constraint # added constraint: constraint((T0289)N22.CB, (T0289)A56.CB) [> 4.5471 = 7.5785 < 9.8521] w=0.6328 to align # Constraint # added constraint: constraint((T0289)K11.CB, (T0289)Y108.CB) [> 4.2147 = 7.0245 < 9.1318] w=0.6328 to align # Constraint # added constraint: constraint((T0289)K12.CB, (T0289)V110.CB) [> 4.4932 = 7.4887 < 9.7353] w=0.6328 to align # Constraint # added constraint: constraint((T0289)T52.CB, (T0289)A92.CB) [> 4.0623 = 6.7704 < 8.8016] w=0.6326 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)W33.CB) [> 4.2197 = 7.0328 < 9.1427] w=0.6172 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)K162.CB) [> 4.2413 = 7.0688 < 9.1895] w=0.6138 to align # Constraint # added constraint: constraint((T0289)R70.CB, (T0289)P159.CB) [> 3.5329 = 5.8881 < 7.6545] w=0.6138 to align # Constraint # added constraint: constraint((T0289)W33.CB, (T0289)P49.CB) [> 3.9279 = 6.5465 < 8.5105] w=0.6137 to align # Constraint # added constraint: constraint((T0289)P54.CB, (T0289)E88.CB) [> 4.5955 = 7.6591 < 9.9569] w=0.6136 to align # Constraint # added constraint: constraint((T0289)I13.CB, (T0289)I205.CB) [> 3.7125 = 6.1876 < 8.0438] w=0.6135 to align # Constraint # added constraint: constraint((T0289)Y108.CB, (T0289)K171.CB) [> 3.1028 = 5.1714 < 6.7228] w=0.6127 to align # Constraint # added constraint: constraint((T0289)F72.CB, (T0289)Q93.CB) [> 4.4338 = 7.3897 < 9.6066] w=0.5947 to align # Constraint # added constraint: constraint((T0289)L45.CB, (T0289)L202.CB) [> 4.0738 = 6.7897 < 8.8266] w=0.5944 to align # Constraint # added constraint: constraint((T0289)C145.CB, (T0289)H200.CB) [> 3.2715 = 5.4524 < 7.0881] w=0.5942 to align # Constraint # added constraint: constraint((T0289)F16.CB, (T0289)A92.CB) [> 4.2030 = 7.0050 < 9.1065] w=0.5942 to align # Constraint # added constraint: constraint((T0289)I126.CB, (T0289)Y163.CB) [> 3.9172 = 6.5287 < 8.4873] w=0.5936 to align # Constraint # added constraint: constraint((T0289)F112.CB, (T0289)A201.CB) [> 3.9630 = 6.6049 < 8.5864] w=0.5770 to align # Constraint # added constraint: constraint((T0289)T25.CB, (T0289)L186.CB) [> 2.9521 = 4.9202 < 6.3962] w=0.5754 to align # Constraint # added constraint: constraint((T0289)Y163.CB, (T0289)P173.CB) [> 3.3905 = 5.6508 < 7.3460] w=0.5754 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)C151.CB) [> 3.3805 = 5.6342 < 7.3245] w=0.5754 to align # Constraint # added constraint: constraint((T0289)S119.CB, (T0289)V178.CB) [> 4.4649 = 7.4415 < 9.6740] w=0.5753 to align # Constraint # added constraint: constraint((T0289)N96.CB, (T0289)Y108.CB) [> 3.6742 = 6.1237 < 7.9608] w=0.5750 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)D113.CB) [> 4.5936 = 7.6560 < 9.9527] w=0.5742 to align # Constraint # added constraint: constraint((T0289)N120.CB, (T0289)E177.CB) [> 2.7118 = 4.5196 < 5.8755] w=0.5637 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)V47.CB) [> 4.0385 = 6.7309 < 8.7502] w=0.5590 to align # Constraint # added constraint: constraint((T0289)T25.CB, (T0289)L191.CB) [> 3.5703 = 5.9505 < 7.7357] w=0.5563 to align # Constraint # added constraint: constraint((T0289)V30.CB, (T0289)I51.CB) [> 4.4622 = 7.4371 < 9.6682] w=0.5562 to align # Constraint # added constraint: constraint((T0289)F112.CB, (T0289)L198.CB) [> 4.1764 = 6.9608 < 9.0490] w=0.5562 to align # Constraint # added constraint: constraint((T0289)T25.CB, (T0289)M194.CB) [> 3.7289 = 6.2149 < 8.0794] w=0.5561 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)G175.CA) [> 4.4942 = 7.4903 < 9.7373] w=0.5561 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)V174.CB) [> 3.2861 = 5.4768 < 7.1198] w=0.5561 to align # Constraint # added constraint: constraint((T0289)G122.CA, (T0289)G175.CA) [> 3.0570 = 5.0951 < 6.6236] w=0.5561 to align # Constraint # added constraint: constraint((T0289)G122.CA, (T0289)V174.CB) [> 3.4035 = 5.6725 < 7.3742] w=0.5561 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)G175.CA) [> 3.9955 = 6.6592 < 8.6570] w=0.5561 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)V174.CB) [> 3.5847 = 5.9745 < 7.7668] w=0.5561 to align # Constraint # added constraint: constraint((T0289)L127.CB, (T0289)E157.CB) [> 4.1055 = 6.8426 < 8.8954] w=0.5439 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)F50.CB) [> 4.4339 = 7.3899 < 9.6068] w=0.5399 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)P49.CB) [> 4.5750 = 7.6250 < 9.9125] w=0.5398 to align # Constraint # added constraint: constraint((T0289)K12.CB, (T0289)F99.CB) [> 3.5544 = 5.9240 < 7.7013] w=0.5370 to align # Constraint # added constraint: constraint((T0289)R70.CB, (T0289)H158.CB) [> 4.1367 = 6.8945 < 8.9629] w=0.5370 to align # Constraint # added constraint: constraint((T0289)N120.CB, (T0289)C151.CB) [> 3.9117 = 6.5195 < 8.4753] w=0.5370 to align # Constraint # added constraint: constraint((T0289)R55.CB, (T0289)I64.CB) [> 3.8219 = 6.3698 < 8.2808] w=0.5369 to align # Constraint # added constraint: constraint((T0289)L45.CB, (T0289)D109.CB) [> 4.3396 = 7.2327 < 9.4025] w=0.5368 to align # Constraint # added constraint: constraint((T0289)M146.CB, (T0289)M197.CB) [> 2.8823 = 4.8038 < 6.2449] w=0.5368 to align # Constraint # added constraint: constraint((T0289)D109.CB, (T0289)I205.CB) [> 3.1255 = 5.2092 < 6.7719] w=0.5368 to align # Constraint # added constraint: constraint((T0289)Y141.CB, (T0289)F204.CB) [> 4.0979 = 6.8298 < 8.8787] w=0.5365 to align # Constraint # added constraint: constraint((T0289)G122.CA, (T0289)E177.CB) [> 4.5606 = 7.6010 < 9.8813] w=0.5254 to align # Constraint # added constraint: constraint((T0289)G122.CA, (T0289)V153.CB) [> 3.8502 = 6.4170 < 8.3421] w=0.5254 to align # Constraint # added constraint: constraint((T0289)I176.CB, (T0289)M194.CB) [> 4.0850 = 6.8084 < 8.8509] w=0.5254 to align # Constraint # added constraint: constraint((T0289)E23.CB, (T0289)L114.CB) [> 4.6769 = 7.7948 < 10.1332] w=0.5179 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)T165.CB) [> 2.7593 = 4.5988 < 5.9784] w=0.5179 to align # Constraint # added constraint: constraint((T0289)L74.CB, (T0289)S168.CB) [> 3.4402 = 5.7337 < 7.4538] w=0.5178 to align # Constraint # added constraint: constraint((T0289)I126.CB, (T0289)H158.CB) [> 2.8679 = 4.7799 < 6.2139] w=0.5178 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)E177.CB) [> 4.5168 = 7.5280 < 9.7864] w=0.5177 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)I176.CB) [> 3.4423 = 5.7372 < 7.4583] w=0.5177 to align # Constraint # added constraint: constraint((T0289)A56.CB, (T0289)L68.CB) [> 4.6919 = 7.8198 < 10.1657] w=0.5176 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)N96.CB) [> 3.9980 = 6.6633 < 8.6623] w=0.5175 to align # Constraint # added constraint: constraint((T0289)W33.CB, (T0289)L198.CB) [> 4.0684 = 6.7807 < 8.8149] w=0.5175 to align # Constraint # added constraint: constraint((T0289)N96.CB, (T0289)T165.CB) [> 4.1353 = 6.8921 < 8.9597] w=0.5171 to align # Constraint # added constraint: constraint((T0289)N96.CB, (T0289)I169.CB) [> 3.8507 = 6.4178 < 8.3431] w=0.5170 to align # Constraint # added constraint: constraint((T0289)I64.CB, (T0289)E88.CB) [> 3.9194 = 6.5324 < 8.4921] w=0.4985 to align # Constraint # added constraint: constraint((T0289)V178.CB, (T0289)I190.CB) [> 3.7346 = 6.2243 < 8.0916] w=0.4984 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)S152.CB) [> 4.4536 = 7.4227 < 9.6495] w=0.4979 to align # Constraint # added constraint: constraint((T0289)K48.CB, (T0289)Y108.CB) [> 4.6106 = 7.6844 < 9.9896] w=0.4822 to align # Constraint # added constraint: constraint((T0289)G18.CA, (T0289)V30.CB) [> 4.4139 = 7.3565 < 9.5635] w=0.4821 to align # Constraint # added constraint: constraint((T0289)N22.CB, (T0289)T61.CB) [> 3.4238 = 5.7063 < 7.4181] w=0.4795 to align # Constraint # added constraint: constraint((T0289)G21.CA, (T0289)R62.CB) [> 3.5533 = 5.9222 < 7.6989] w=0.4795 to align # Constraint # added constraint: constraint((T0289)G21.CA, (T0289)T61.CB) [> 3.6868 = 6.1446 < 7.9880] w=0.4795 to align # Constraint # added constraint: constraint((T0289)H20.CB, (T0289)R62.CB) [> 2.8270 = 4.7118 < 6.1253] w=0.4795 to align # Constraint # added constraint: constraint((T0289)L74.CB, (T0289)P159.CB) [> 4.3231 = 7.2052 < 9.3667] w=0.4794 to align # Constraint # added constraint: constraint((T0289)G17.CA, (T0289)L29.CB) [> 4.5731 = 7.6218 < 9.9084] w=0.4794 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)P173.CB) [> 4.1220 = 6.8701 < 8.9311] w=0.4794 to align # Constraint # added constraint: constraint((T0289)V71.CB, (T0289)P86.CB) [> 3.0141 = 5.0235 < 6.5306] w=0.4794 to align # Constraint # added constraint: constraint((T0289)V71.CB, (T0289)L85.CB) [> 3.8468 = 6.4113 < 8.3348] w=0.4794 to align # Constraint # added constraint: constraint((T0289)L74.CB, (T0289)L127.CB) [> 3.7046 = 6.1744 < 8.0267] w=0.4794 to align # Constraint # added constraint: constraint((T0289)G122.CA, (T0289)I176.CB) [> 4.5621 = 7.6035 < 9.8845] w=0.4793 to align # Constraint # added constraint: constraint((T0289)W33.CB, (T0289)R195.CB) [> 4.2179 = 7.0299 < 9.1388] w=0.4791 to align # Constraint # added constraint: constraint((T0289)D109.CB, (T0289)A170.CB) [> 3.9910 = 6.6517 < 8.6472] w=0.4679 to align # Constraint # added constraint: constraint((T0289)I142.CB, (T0289)A201.CB) [> 3.5747 = 5.9579 < 7.7452] w=0.4602 to align # Constraint # added constraint: constraint((T0289)C145.CB, (T0289)R196.CB) [> 3.4073 = 5.6788 < 7.3825] w=0.4602 to align # Constraint # added constraint: constraint((T0289)M146.CB, (T0289)Q193.CB) [> 3.1806 = 5.3010 < 6.8913] w=0.4599 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)F99.CB) [> 4.0507 = 6.7511 < 8.7764] w=0.4598 to align # Constraint # added constraint: constraint((T0289)F139.CB, (T0289)V174.CB) [> 4.0222 = 6.7036 < 8.7147] w=0.4597 to align # Constraint # added constraint: constraint((T0289)F16.CB, (T0289)V111.CB) [> 4.4004 = 7.3340 < 9.5342] w=0.4596 to align # Constraint # added constraint: constraint((T0289)D113.CB, (T0289)P173.CB) [> 4.2630 = 7.1050 < 9.2365] w=0.4596 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)V111.CB) [> 4.5661 = 7.6101 < 9.8931] w=0.4596 to align # Constraint # added constraint: constraint((T0289)V174.CB, (T0289)A201.CB) [> 3.9741 = 6.6235 < 8.6106] w=0.4486 to align # Constraint # added constraint: constraint((T0289)D73.CB, (T0289)A164.CB) [> 3.5763 = 5.9606 < 7.7488] w=0.4412 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)F139.CB) [> 3.7395 = 6.2325 < 8.1022] w=0.4411 to align # Constraint # added constraint: constraint((T0289)Y172.CB, (T0289)I205.CB) [> 3.4039 = 5.6732 < 7.3751] w=0.4410 to align # Constraint # added constraint: constraint((T0289)A56.CB, (T0289)D65.CB) [> 4.1433 = 6.9056 < 8.9772] w=0.4410 to align # Constraint # added constraint: constraint((T0289)G122.CA, (T0289)Y154.CB) [> 3.7247 = 6.2078 < 8.0701] w=0.4410 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)Y154.CB) [> 4.4659 = 7.4432 < 9.6761] w=0.4410 to align # Constraint # added constraint: constraint((T0289)Y141.CB, (T0289)H200.CB) [> 3.2816 = 5.4693 < 7.1101] w=0.4410 to align # Constraint # added constraint: constraint((T0289)F50.CB, (T0289)I95.CB) [> 4.3056 = 7.1760 < 9.3288] w=0.4403 to align # Constraint # added constraint: constraint((T0289)Y163.CB, (T0289)G175.CA) [> 3.4497 = 5.7496 < 7.4745] w=0.4401 to align # Constraint # added constraint: constraint((T0289)F139.CB, (T0289)V153.CB) [> 3.5789 = 5.9648 < 7.7542] w=0.4401 to align # Constraint # added constraint: constraint((T0289)I142.CB, (T0289)M197.CB) [> 2.6564 = 4.4273 < 5.7555] w=0.4218 to align # Constraint # added constraint: constraint((T0289)D73.CB, (T0289)Q93.CB) [> 4.5978 = 7.6630 < 9.9619] w=0.4218 to align # Constraint # added constraint: constraint((T0289)V47.CB, (T0289)L202.CB) [> 4.1471 = 6.9119 < 8.9854] w=0.4218 to align # Constraint # added constraint: constraint((T0289)I176.CB, (T0289)L198.CB) [> 4.3575 = 7.2625 < 9.4412] w=0.4218 to align # Constraint # added constraint: constraint((T0289)G21.CA, (T0289)I51.CB) [> 4.6332 = 7.7220 < 10.0386] w=0.4217 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)V153.CB) [> 4.3403 = 7.2338 < 9.4039] w=0.4213 to align # Constraint # added constraint: constraint((T0289)N36.CB, (T0289)K199.CB) [> 3.8099 = 6.3498 < 8.2548] w=0.4212 to align # Constraint # added constraint: constraint((T0289)L149.CB, (T0289)Q193.CB) [> 3.6392 = 6.0654 < 7.8850] w=0.4211 to align # Constraint # added constraint: constraint((T0289)L127.CB, (T0289)V174.CB) [> 3.3650 = 5.6083 < 7.2908] w=0.4211 to align # Constraint # added constraint: constraint((T0289)I126.CB, (T0289)G175.CA) [> 3.0497 = 5.0828 < 6.6076] w=0.4211 to align # Constraint # added constraint: constraint((T0289)I126.CB, (T0289)V174.CB) [> 3.6909 = 6.1515 < 7.9970] w=0.4211 to align # Constraint # added constraint: constraint((T0289)R70.CB, (T0289)M81.CB) [> 3.3415 = 5.5691 < 7.2398] w=0.4027 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)M146.CB) [> 3.5519 = 5.9198 < 7.6957] w=0.4027 to align # Constraint # added constraint: constraint((T0289)C145.CB, (T0289)M197.CB) [> 3.2354 = 5.3923 < 7.0100] w=0.4025 to align # Constraint # added constraint: constraint((T0289)F99.CB, (T0289)I169.CB) [> 3.8812 = 6.4687 < 8.4093] w=0.4022 to align # Constraint # added constraint: constraint((T0289)L135.CB, (T0289)Y172.CB) [> 3.9191 = 6.5318 < 8.4913] w=0.4021 to align # Constraint # added constraint: constraint((T0289)I126.CB, (T0289)E177.CB) [> 4.2520 = 7.0867 < 9.2127] w=0.4019 to align # Constraint # added constraint: constraint((T0289)L125.CB, (T0289)E177.CB) [> 4.1177 = 6.8628 < 8.9216] w=0.4019 to align # Constraint # added constraint: constraint((T0289)L125.CB, (T0289)I176.CB) [> 3.7151 = 6.1919 < 8.0494] w=0.4019 to align # Constraint # added constraint: constraint((T0289)T124.CB, (T0289)E177.CB) [> 2.9069 = 4.8448 < 6.2982] w=0.4019 to align # Constraint # added constraint: constraint((T0289)L127.CB, (T0289)G175.CA) [> 4.0667 = 6.7779 < 8.8112] w=0.4019 to align # Constraint # added constraint: constraint((T0289)C145.CB, (T0289)F204.CB) [> 2.8550 = 4.7584 < 6.1859] w=0.4018 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)R167.CB) [> 4.6730 = 7.7884 < 10.1248] w=0.3910 to align # Constraint # added constraint: constraint((T0289)I126.CB, (T0289)L155.CB) [> 4.4037 = 7.3394 < 9.5413] w=0.3901 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)I142.CB) [> 3.4620 = 5.7701 < 7.5011] w=0.3855 to align # Constraint # added constraint: constraint((T0289)L74.CB, (T0289)R167.CB) [> 3.3648 = 5.6080 < 7.2904] w=0.3836 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)V153.CB) [> 2.9281 = 4.8802 < 6.3443] w=0.3834 to align # Constraint # added constraint: constraint((T0289)T19.CB, (T0289)K162.CB) [> 4.3728 = 7.2880 < 9.4745] w=0.3834 to align # Constraint # added constraint: constraint((T0289)R70.CB, (T0289)L161.CB) [> 4.2259 = 7.0431 < 9.1560] w=0.3834 to align # Constraint # added constraint: constraint((T0289)V71.CB, (T0289)S160.CB) [> 3.4063 = 5.6771 < 7.3803] w=0.3834 to align # Constraint # added constraint: constraint((T0289)F72.CB, (T0289)K162.CB) [> 3.0670 = 5.1116 < 6.6451] w=0.3834 to align # Constraint # added constraint: constraint((T0289)F72.CB, (T0289)T165.CB) [> 2.3738 = 3.9564 < 5.1433] w=0.3834 to align # Constraint # added constraint: constraint((T0289)L74.CB, (T0289)T165.CB) [> 2.5067 = 4.1778 < 5.4312] w=0.3834 to align # Constraint # added constraint: constraint((T0289)V89.CB, (T0289)K162.CB) [> 4.5995 = 7.6658 < 9.9655] w=0.3834 to align # Constraint # added constraint: constraint((T0289)D113.CB, (T0289)Y163.CB) [> 3.4856 = 5.8093 < 7.5521] w=0.3834 to align # Constraint # added constraint: constraint((T0289)I126.CB, (T0289)A164.CB) [> 3.2234 = 5.3724 < 6.9841] w=0.3834 to align # Constraint # added constraint: constraint((T0289)L127.CB, (T0289)A164.CB) [> 3.3829 = 5.6381 < 7.3296] w=0.3834 to align # Constraint # added constraint: constraint((T0289)I176.CB, (T0289)M197.CB) [> 4.2994 = 7.1656 < 9.3153] w=0.3834 to align # Constraint # added constraint: constraint((T0289)V5.CB, (T0289)G44.CA) [> 4.2511 = 7.0852 < 9.2108] w=0.3833 to align # Constraint # added constraint: constraint((T0289)N69.CB, (T0289)K162.CB) [> 3.7525 = 6.2542 < 8.1304] w=0.3833 to align # Constraint # added constraint: constraint((T0289)E7.CB, (T0289)E46.CB) [> 4.4765 = 7.4608 < 9.6990] w=0.3832 to align # Constraint # added constraint: constraint((T0289)T118.CB, (T0289)P180.CB) [> 4.1724 = 6.9540 < 9.0402] w=0.3827 to align # Constraint # added constraint: constraint((T0289)I126.CB, (T0289)I176.CB) [> 4.2980 = 7.1634 < 9.3124] w=0.3827 to align # Constraint # added constraint: constraint((T0289)Y108.CB, (T0289)A170.CB) [> 3.5354 = 5.8923 < 7.6600] w=0.3719 to align # Constraint # added constraint: constraint((T0289)T118.CB, (T0289)G179.CA) [> 4.1384 = 6.8973 < 8.9665] w=0.3645 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)L135.CB) [> 4.5040 = 7.5066 < 9.7586] w=0.3644 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)T165.CB) [> 4.3105 = 7.1842 < 9.3395] w=0.3529 to align # Constraint # added constraint: constraint((T0289)G122.CA, (T0289)L155.CB) [> 4.1522 = 6.9202 < 8.9963] w=0.3489 to align # Constraint # added constraint: constraint((T0289)T25.CB, (T0289)G179.CA) [> 4.0525 = 6.7542 < 8.7805] w=0.3454 to align # Constraint # added constraint: constraint((T0289)F72.CB, (T0289)Y163.CB) [> 4.2100 = 7.0167 < 9.1217] w=0.3454 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)A201.CB) [> 3.3598 = 5.5996 < 7.2795] w=0.3451 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)R167.CB) [> 4.7271 = 7.8786 < 10.2421] w=0.3450 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)L155.CB) [> 3.5952 = 5.9919 < 7.7895] w=0.3450 to align # Constraint # added constraint: constraint((T0289)R131.CB, (T0289)L155.CB) [> 4.1916 = 6.9861 < 9.0819] w=0.3450 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)T166.CB) [> 4.5648 = 7.6079 < 9.8903] w=0.3450 to align # Constraint # added constraint: constraint((T0289)L125.CB, (T0289)S152.CB) [> 4.2768 = 7.1281 < 9.2665] w=0.3450 to align # Constraint # added constraint: constraint((T0289)F50.CB, (T0289)A92.CB) [> 4.2938 = 7.1564 < 9.3033] w=0.3450 to align # Constraint # added constraint: constraint((T0289)V5.CB, (T0289)A43.CB) [> 3.1993 = 5.3321 < 6.9318] w=0.3450 to align # Constraint # added constraint: constraint((T0289)M146.CB, (T0289)A201.CB) [> 3.5248 = 5.8746 < 7.6370] w=0.3444 to align # Constraint # added constraint: constraint((T0289)L125.CB, (T0289)C151.CB) [> 3.1246 = 5.2077 < 6.7700] w=0.3261 to align # Constraint # added constraint: constraint((T0289)Y108.CB, (T0289)T165.CB) [> 4.5827 = 7.6378 < 9.9292] w=0.3259 to align # Constraint # added constraint: constraint((T0289)Y172.CB, (T0289)A201.CB) [> 3.9109 = 6.5182 < 8.4736] w=0.3258 to align # Constraint # added constraint: constraint((T0289)V5.CB, (T0289)R42.CB) [> 3.4584 = 5.7640 < 7.4932] w=0.3258 to align # Constraint # added constraint: constraint((T0289)C151.CB, (T0289)M197.CB) [> 4.5985 = 7.6642 < 9.9634] w=0.3258 to align # Constraint # added constraint: constraint((T0289)L135.CB, (T0289)L155.CB) [> 4.4636 = 7.4393 < 9.6711] w=0.3255 to align # Constraint # added constraint: constraint((T0289)L125.CB, (T0289)V174.CB) [> 3.4415 = 5.7358 < 7.4565] w=0.3251 to align # Constraint # added constraint: constraint((T0289)L125.CB, (T0289)G175.CA) [> 3.8702 = 6.4503 < 8.3853] w=0.3251 to align # Constraint # added constraint: constraint((T0289)K143.CB, (T0289)V153.CB) [> 3.3430 = 5.5717 < 7.2431] w=0.3138 to align # Constraint # added constraint: constraint((T0289)F139.CB, (T0289)S152.CB) [> 4.4292 = 7.3821 < 9.5967] w=0.3086 to align # Constraint # added constraint: constraint((T0289)T124.CB, (T0289)C151.CB) [> 3.8396 = 6.3993 < 8.3190] w=0.3079 to align # Constraint # added constraint: constraint((T0289)T19.CB, (T0289)L161.CB) [> 3.8580 = 6.4301 < 8.3591] w=0.3070 to align # Constraint # added constraint: constraint((T0289)F16.CB, (T0289)L161.CB) [> 4.2118 = 7.0196 < 9.1255] w=0.3070 to align # Constraint # added constraint: constraint((T0289)S119.CB, (T0289)P180.CB) [> 4.2020 = 7.0033 < 9.1042] w=0.3070 to align # Constraint # added constraint: constraint((T0289)V71.CB, (T0289)E88.CB) [> 4.3900 = 7.3167 < 9.5117] w=0.3070 to align # Constraint # added constraint: constraint((T0289)G26.CA, (T0289)L191.CB) [> 4.3762 = 7.2936 < 9.4817] w=0.3069 to align # Constraint # added constraint: constraint((T0289)G21.CA, (T0289)Y63.CB) [> 4.6234 = 7.7057 < 10.0174] w=0.3069 to align # Constraint # added constraint: constraint((T0289)L24.CB, (T0289)H183.CB) [> 3.4262 = 5.7104 < 7.4236] w=0.3068 to align # Constraint # added constraint: constraint((T0289)T124.CB, (T0289)I176.CB) [> 4.4724 = 7.4540 < 9.6902] w=0.3068 to align # Constraint # added constraint: constraint((T0289)T25.CB, (T0289)L114.CB) [> 3.9025 = 6.5041 < 8.4554] w=0.3067 to align # Constraint # added constraint: constraint((T0289)Y108.CB, (T0289)T166.CB) [> 4.6477 = 7.7462 < 10.0700] w=0.3066 to align # Constraint # added constraint: constraint((T0289)I142.CB, (T0289)C151.CB) [> 3.7937 = 6.3228 < 8.2197] w=0.3066 to align # Constraint # added constraint: constraint((T0289)T118.CB, (T0289)Q181.CB) [> 3.8084 = 6.3473 < 8.2515] w=0.3066 to align # Constraint # added constraint: constraint((T0289)K143.CB, (T0289)S152.CB) [> 4.4577 = 7.4295 < 9.6584] w=0.3063 to align # Constraint # added constraint: constraint((T0289)T124.CB, (T0289)S152.CB) [> 3.2362 = 5.3937 < 7.0118] w=0.3060 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)M138.CB) [> 2.7964 = 4.6607 < 6.0588] w=0.2896 to align # Constraint # added constraint: constraint((T0289)D129.CB, (T0289)L155.CB) [> 3.7299 = 6.2164 < 8.0813] w=0.2894 to align # Constraint # added constraint: constraint((T0289)F16.CB, (T0289)V30.CB) [> 4.4338 = 7.3896 < 9.6065] w=0.2878 to align # Constraint # added constraint: constraint((T0289)L24.CB, (T0289)V57.CB) [> 4.2203 = 7.0338 < 9.1440] w=0.2878 to align # Constraint # added constraint: constraint((T0289)R42.CB, (T0289)D203.CB) [> 3.7823 = 6.3038 < 8.1949] w=0.2877 to align # Constraint # added constraint: constraint((T0289)V71.CB, (T0289)M81.CB) [> 3.4940 = 5.8233 < 7.5702] w=0.2875 to align # Constraint # added constraint: constraint((T0289)Y172.CB, (T0289)F204.CB) [> 4.2043 = 7.0071 < 9.1092] w=0.2874 to align # Constraint # added constraint: constraint((T0289)A147.CB, (T0289)M197.CB) [> 3.5408 = 5.9013 < 7.6717] w=0.2874 to align # Constraint # added constraint: constraint((T0289)F139.CB, (T0289)Y154.CB) [> 4.2737 = 7.1228 < 9.2596] w=0.2870 to align # Constraint # added constraint: constraint((T0289)G122.CA, (T0289)C151.CB) [> 3.7652 = 6.2754 < 8.1580] w=0.2870 to align # Constraint # added constraint: constraint((T0289)N116.CB, (T0289)E177.CB) [> 3.8323 = 6.3872 < 8.3033] w=0.2868 to align # Constraint # added constraint: constraint((T0289)N116.CB, (T0289)V178.CB) [> 3.5660 = 5.9433 < 7.7263] w=0.2868 to align # Constraint # added constraint: constraint((T0289)N116.CB, (T0289)G179.CA) [> 3.2281 = 5.3802 < 6.9943] w=0.2868 to align # Constraint # added constraint: constraint((T0289)N116.CB, (T0289)P180.CB) [> 3.9647 = 6.6078 < 8.5901] w=0.2868 to align # Constraint # added constraint: constraint((T0289)N116.CB, (T0289)Q181.CB) [> 3.5731 = 5.9552 < 7.7418] w=0.2868 to align # Constraint # added constraint: constraint((T0289)T117.CB, (T0289)P180.CB) [> 3.9302 = 6.5503 < 8.5154] w=0.2868 to align # Constraint # added constraint: constraint((T0289)L127.CB, (T0289)P173.CB) [> 4.0683 = 6.7806 < 8.8147] w=0.2868 to align # Constraint # added constraint: constraint((T0289)G17.CA, (T0289)P49.CB) [> 3.9791 = 6.6318 < 8.6213] w=0.2721 to align # Constraint # added constraint: constraint((T0289)T118.CB, (T0289)V178.CB) [> 4.7177 = 7.8629 < 10.2218] w=0.2685 to align # Constraint # added constraint: constraint((T0289)E75.CB, (T0289)L127.CB) [> 2.3933 = 3.9889 < 5.1855] w=0.2684 to align # Constraint # added constraint: constraint((T0289)V178.CB, (T0289)L198.CB) [> 4.1468 = 6.9113 < 8.9847] w=0.2683 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)P150.CB) [> 3.9459 = 6.5765 < 8.5494] w=0.2677 to align # Constraint # added constraint: constraint((T0289)L127.CB, (T0289)T166.CB) [> 4.5474 = 7.5790 < 9.8526] w=0.2676 to align # Constraint # added constraint: constraint((T0289)F16.CB, (T0289)I95.CB) [> 4.1548 = 6.9246 < 9.0020] w=0.2675 to align # Constraint # added constraint: constraint((T0289)F28.CB, (T0289)M194.CB) [> 4.3590 = 7.2650 < 9.4445] w=0.2495 to align # Constraint # added constraint: constraint((T0289)N69.CB, (T0289)H158.CB) [> 4.5550 = 7.5916 < 9.8691] w=0.2494 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)A170.CB) [> 2.7758 = 4.6264 < 6.0143] w=0.2493 to align # Constraint # added constraint: constraint((T0289)V110.CB, (T0289)A170.CB) [> 3.9976 = 6.6627 < 8.6615] w=0.2493 to align # Constraint # added constraint: constraint((T0289)T52.CB, (T0289)I95.CB) [> 4.0760 = 6.7933 < 8.8313] w=0.2492 to align # Constraint # added constraint: constraint((T0289)V27.CB, (T0289)F50.CB) [> 3.3821 = 5.6369 < 7.3280] w=0.2492 to align # Constraint # added constraint: constraint((T0289)A164.CB, (T0289)P173.CB) [> 4.6795 = 7.7991 < 10.1388] w=0.2492 to align # Constraint # added constraint: constraint((T0289)T117.CB, (T0289)G179.CA) [> 3.9887 = 6.6478 < 8.6421] w=0.2491 to align # Constraint # added constraint: constraint((T0289)T117.CB, (T0289)E177.CB) [> 3.3774 = 5.6290 < 7.3176] w=0.2491 to align # Constraint # added constraint: constraint((T0289)G26.CA, (T0289)N116.CB) [> 4.1461 = 6.9101 < 8.9831] w=0.2491 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)S152.CB) [> 4.1446 = 6.9077 < 8.9800] w=0.2487 to align # Constraint # added constraint: constraint((T0289)L135.CB, (T0289)V174.CB) [> 4.2008 = 7.0013 < 9.1016] w=0.2487 to align # Constraint # added constraint: constraint((T0289)F99.CB, (T0289)K171.CB) [> 4.4632 = 7.4386 < 9.6702] w=0.2486 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)L29.CB) [> 4.0806 = 6.8010 < 8.8413] w=0.2337 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)F204.CB) [> 3.3899 = 5.6499 < 7.3449] w=0.2302 to align # Constraint # added constraint: constraint((T0289)T25.CB, (T0289)N116.CB) [> 3.2582 = 5.4303 < 7.0594] w=0.2302 to align # Constraint # added constraint: constraint((T0289)E23.CB, (T0289)N116.CB) [> 2.1503 = 3.5838 < 4.6589] w=0.2302 to align # Constraint # added constraint: constraint((T0289)G18.CA, (T0289)A56.CB) [> 4.6443 = 7.7404 < 10.0626] w=0.2302 to align # Constraint # added constraint: constraint((T0289)Y108.CB, (T0289)I169.CB) [> 3.6677 = 6.1128 < 7.9467] w=0.2302 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)A170.CB) [> 4.6090 = 7.6816 < 9.9861] w=0.2301 to align # Constraint # added constraint: constraint((T0289)A56.CB, (T0289)C66.CB) [> 4.2537 = 7.0896 < 9.2164] w=0.2301 to align # Constraint # added constraint: constraint((T0289)F28.CB, (T0289)I190.CB) [> 4.0268 = 6.7114 < 8.7248] w=0.2301 to align # Constraint # added constraint: constraint((T0289)G18.CA, (T0289)F50.CB) [> 4.5424 = 7.5707 < 9.8419] w=0.2300 to align # Constraint # added constraint: constraint((T0289)G37.CA, (T0289)V47.CB) [> 4.6359 = 7.7264 < 10.0444] w=0.2300 to align # Constraint # added constraint: constraint((T0289)I142.CB, (T0289)V153.CB) [> 3.0828 = 5.1379 < 6.6793] w=0.2298 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)P150.CB) [> 3.7233 = 6.2055 < 8.0671] w=0.2297 to align # Constraint # added constraint: constraint((T0289)L24.CB, (T0289)P182.CB) [> 3.9713 = 6.6188 < 8.6044] w=0.2296 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)I169.CB) [> 4.1314 = 6.8856 < 8.9513] w=0.2295 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)G179.CA) [> 3.3826 = 5.6376 < 7.3289] w=0.2294 to align # Constraint # added constraint: constraint((T0289)V110.CB, (T0289)V174.CB) [> 4.5986 = 7.6644 < 9.9637] w=0.2291 to align # Constraint # added constraint: constraint((T0289)K48.CB, (T0289)F99.CB) [> 4.1189 = 6.8648 < 8.9243] w=0.2150 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)G26.CA) [> 4.2023 = 7.0037 < 9.1049] w=0.2145 to align # Constraint # added constraint: constraint((T0289)K48.CB, (T0289)I95.CB) [> 4.1785 = 6.9641 < 9.0534] w=0.2112 to align # Constraint # added constraint: constraint((T0289)T52.CB, (T0289)V89.CB) [> 4.5631 = 7.6052 < 9.8868] w=0.2112 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)A201.CB) [> 4.3396 = 7.2327 < 9.4025] w=0.2111 to align # Constraint # added constraint: constraint((T0289)C4.CB, (T0289)R42.CB) [> 3.9763 = 6.6272 < 8.6153] w=0.2110 to align # Constraint # added constraint: constraint((T0289)V27.CB, (T0289)L114.CB) [> 4.7272 = 7.8787 < 10.2423] w=0.2110 to align # Constraint # added constraint: constraint((T0289)N22.CB, (T0289)I64.CB) [> 3.5072 = 5.8453 < 7.5989] w=0.2109 to align # Constraint # added constraint: constraint((T0289)G100.CA, (T0289)I169.CB) [> 3.9038 = 6.5064 < 8.4583] w=0.2109 to align # Constraint # added constraint: constraint((T0289)G26.CA, (T0289)F50.CB) [> 3.2738 = 5.4563 < 7.0932] w=0.2109 to align # Constraint # added constraint: constraint((T0289)G122.CA, (T0289)S152.CB) [> 3.4751 = 5.7918 < 7.5293] w=0.2105 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)V178.CB) [> 4.1122 = 6.8537 < 8.9099] w=0.2100 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)E177.CB) [> 3.7751 = 6.2919 < 8.1794] w=0.2100 to align # Constraint # added constraint: constraint((T0289)I176.CB, (T0289)A201.CB) [> 4.3619 = 7.2699 < 9.4508] w=0.1994 to align # Constraint # added constraint: constraint((T0289)W33.CB, (T0289)V47.CB) [> 4.1500 = 6.9166 < 8.9916] w=0.1956 to align # Constraint # added constraint: constraint((T0289)F72.CB, (T0289)A92.CB) [> 4.0076 = 6.6794 < 8.6832] w=0.1920 to align # Constraint # added constraint: constraint((T0289)N22.CB, (T0289)Y63.CB) [> 3.1241 = 5.2068 < 6.7688] w=0.1917 to align # Constraint # added constraint: constraint((T0289)C4.CB, (T0289)E46.CB) [> 2.9572 = 4.9287 < 6.4073] w=0.1917 to align # Constraint # added constraint: constraint((T0289)T52.CB, (T0289)R91.CB) [> 3.9357 = 6.5595 < 8.5274] w=0.1917 to align # Constraint # added constraint: constraint((T0289)E23.CB, (T0289)H183.CB) [> 3.7594 = 6.2657 < 8.1454] w=0.1917 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)I95.CB) [> 4.1179 = 6.8632 < 8.9221] w=0.1916 to align # Constraint # added constraint: constraint((T0289)V110.CB, (T0289)F208.CB) [> 3.0999 = 5.1664 < 6.7164] w=0.1913 to align # Constraint # added constraint: constraint((T0289)V260.CB, (T0289)I269.CB) [> 3.6050 = 6.0084 < 7.8109] w=0.1909 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)C151.CB) [> 3.4389 = 5.7315 < 7.4510] w=0.1908 to align # Constraint # added constraint: constraint((T0289)V47.CB, (T0289)Y108.CB) [> 4.6631 = 7.7718 < 10.1034] w=0.1764 to align # Constraint # added constraint: constraint((T0289)N53.CB, (T0289)Y63.CB) [> 4.3798 = 7.2996 < 9.4895] w=0.1728 to align # Constraint # added constraint: constraint((T0289)D109.CB, (T0289)F208.CB) [> 3.3647 = 5.6078 < 7.2901] w=0.1727 to align # Constraint # added constraint: constraint((T0289)L161.CB, (T0289)P173.CB) [> 4.4443 = 7.4071 < 9.6293] w=0.1726 to align # Constraint # added constraint: constraint((T0289)C4.CB, (T0289)V47.CB) [> 4.0025 = 6.6709 < 8.6721] w=0.1726 to align # Constraint # added constraint: constraint((T0289)E23.CB, (T0289)T117.CB) [> 3.8618 = 6.4363 < 8.3672] w=0.1726 to align # Constraint # added constraint: constraint((T0289)N22.CB, (T0289)V57.CB) [> 4.3035 = 7.1726 < 9.3244] w=0.1726 to align # Constraint # added constraint: constraint((T0289)A6.CB, (T0289)E46.CB) [> 4.0140 = 6.6899 < 8.6969] w=0.1726 to align # Constraint # added constraint: constraint((T0289)T124.CB, (T0289)G175.CA) [> 4.6930 = 7.8216 < 10.1681] w=0.1725 to align # Constraint # added constraint: constraint((T0289)A147.CB, (T0289)D189.CB) [> 3.3887 = 5.6479 < 7.3422] w=0.1725 to align # Constraint # added constraint: constraint((T0289)D65.CB, (T0289)L85.CB) [> 4.2709 = 7.1182 < 9.2537] w=0.1725 to align # Constraint # added constraint: constraint((T0289)I126.CB, (T0289)V153.CB) [> 4.3619 = 7.2699 < 9.4509] w=0.1725 to align # Constraint # added constraint: constraint((T0289)D129.CB, (T0289)I156.CB) [> 4.0231 = 6.7051 < 8.7167] w=0.1720 to align # Constraint # added constraint: constraint((T0289)G122.CA, (T0289)P150.CB) [> 3.2693 = 5.4488 < 7.0835] w=0.1719 to align # Constraint # added constraint: constraint((T0289)L24.CB, (T0289)Q181.CB) [> 3.7304 = 6.2174 < 8.0826] w=0.1719 to align # Constraint # added constraint: constraint((T0289)T117.CB, (T0289)Q181.CB) [> 3.8475 = 6.4125 < 8.3363] w=0.1719 to align # Constraint # added constraint: constraint((T0289)Q181.CB, (T0289)I190.CB) [> 3.9733 = 6.6221 < 8.6088] w=0.1567 to align # Constraint # added constraint: constraint((T0289)T124.CB, (T0289)P150.CB) [> 3.3275 = 5.5459 < 7.2096] w=0.1552 to align # Constraint # added constraint: constraint((T0289)L125.CB, (T0289)M138.CB) [> 3.7071 = 6.1784 < 8.0320] w=0.1545 to align # Constraint # added constraint: constraint((T0289)E23.CB, (T0289)V185.CB) [> 3.7284 = 6.2140 < 8.0781] w=0.1534 to align # Constraint # added constraint: constraint((T0289)F16.CB, (T0289)K48.CB) [> 4.6065 = 7.6775 < 9.9808] w=0.1534 to align # Constraint # added constraint: constraint((T0289)G26.CA, (T0289)K48.CB) [> 3.9440 = 6.5733 < 8.5453] w=0.1533 to align # Constraint # added constraint: constraint((T0289)H140.CB, (T0289)V153.CB) [> 3.3711 = 5.6185 < 7.3041] w=0.1529 to align # Constraint # added constraint: constraint((T0289)L125.CB, (T0289)V153.CB) [> 4.0030 = 6.6716 < 8.6731] w=0.1411 to align # Constraint # added constraint: constraint((T0289)G179.CA, (T0289)M194.CB) [> 4.0405 = 6.7342 < 8.7544] w=0.1411 to align # Constraint # added constraint: constraint((T0289)P9.CB, (T0289)E46.CB) [> 4.2754 = 7.1256 < 9.2633] w=0.1380 to align # Constraint # added constraint: constraint((T0289)W33.CB, (T0289)K48.CB) [> 4.3444 = 7.2407 < 9.4129] w=0.1380 to align # Constraint # added constraint: constraint((T0289)L125.CB, (T0289)P150.CB) [> 3.7169 = 6.1948 < 8.0533] w=0.1363 to align # Constraint # added constraint: constraint((T0289)P256.CB, (T0289)L271.CB) [> 3.2477 = 5.4128 < 7.0366] w=0.1344 to align # Constraint # added constraint: constraint((T0289)T25.CB, (T0289)P180.CB) [> 4.6124 = 7.6873 < 9.9935] w=0.1344 to align # Constraint # added constraint: constraint((T0289)L254.CB, (T0289)L271.CB) [> 3.9932 = 6.6553 < 8.6519] w=0.1343 to align # Constraint # added constraint: constraint((T0289)I95.CB, (T0289)L161.CB) [> 4.1643 = 6.9405 < 9.0226] w=0.1343 to align # Constraint # added constraint: constraint((T0289)R70.CB, (T0289)E157.CB) [> 4.4004 = 7.3339 < 9.5341] w=0.1343 to align # Constraint # added constraint: constraint((T0289)R55.CB, (T0289)C66.CB) [> 4.7069 = 7.8448 < 10.1983] w=0.1342 to align # Constraint # added constraint: constraint((T0289)D129.CB, (T0289)T166.CB) [> 3.0728 = 5.1214 < 6.6578] w=0.1341 to align # Constraint # added constraint: constraint((T0289)F50.CB, (T0289)L98.CB) [> 3.9525 = 6.5876 < 8.5638] w=0.1338 to align # Constraint # added constraint: constraint((T0289)I242.CB, (T0289)K252.CB) [> 3.8392 = 6.3986 < 8.3182] w=0.1337 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)F208.CB) [> 4.2446 = 7.0743 < 9.1966] w=0.1336 to align # Constraint # added constraint: constraint((T0289)D109.CB, (T0289)I169.CB) [> 3.7723 = 6.2871 < 8.1733] w=0.1228 to align # Constraint # added constraint: constraint((T0289)D106.CB, (T0289)A170.CB) [> 3.3459 = 5.5765 < 7.2495] w=0.1228 to align # Constraint # added constraint: constraint((T0289)T124.CB, (T0289)L149.CB) [> 3.1581 = 5.2635 < 6.8426] w=0.1171 to align # Constraint # added constraint: constraint((T0289)F28.CB, (T0289)L186.CB) [> 3.6879 = 6.1466 < 7.9905] w=0.1152 to align # Constraint # added constraint: constraint((T0289)F28.CB, (T0289)H183.CB) [> 3.9121 = 6.5201 < 8.4761] w=0.1152 to align # Constraint # added constraint: constraint((T0289)H20.CB, (T0289)Y63.CB) [> 4.0740 = 6.7900 < 8.8270] w=0.1152 to align # Constraint # added constraint: constraint((T0289)L45.CB, (T0289)V110.CB) [> 4.7508 = 7.9180 < 10.2934] w=0.1152 to align # Constraint # added constraint: constraint((T0289)K48.CB, (T0289)L98.CB) [> 4.3553 = 7.2589 < 9.4366] w=0.1152 to align # Constraint # added constraint: constraint((T0289)I156.CB, (T0289)I224.CB) [> 4.0797 = 6.7995 < 8.8393] w=0.1152 to align # Constraint # added constraint: constraint((T0289)L155.CB, (T0289)I224.CB) [> 3.9464 = 6.5774 < 8.5506] w=0.1152 to align # Constraint # added constraint: constraint((T0289)V153.CB, (T0289)K223.CB) [> 4.0236 = 6.7060 < 8.7178] w=0.1152 to align # Constraint # added constraint: constraint((T0289)V153.CB, (T0289)Y222.CB) [> 3.3021 = 5.5034 < 7.1544] w=0.1152 to align # Constraint # added constraint: constraint((T0289)S152.CB, (T0289)Y222.CB) [> 3.7784 = 6.2974 < 8.1866] w=0.1152 to align # Constraint # added constraint: constraint((T0289)C151.CB, (T0289)Y222.CB) [> 3.9534 = 6.5891 < 8.5658] w=0.1152 to align # Constraint # added constraint: constraint((T0289)C151.CB, (T0289)V221.CB) [> 4.1718 = 6.9530 < 9.0389] w=0.1152 to align # Constraint # added constraint: constraint((T0289)C151.CB, (T0289)D220.CB) [> 3.1560 = 5.2600 < 6.8379] w=0.1152 to align # Constraint # added constraint: constraint((T0289)C151.CB, (T0289)I219.CB) [> 3.6148 = 6.0247 < 7.8321] w=0.1152 to align # Constraint # added constraint: constraint((T0289)P150.CB, (T0289)D220.CB) [> 3.6899 = 6.1498 < 7.9948] w=0.1152 to align # Constraint # added constraint: constraint((T0289)E128.CB, (T0289)Y154.CB) [> 3.1532 = 5.2554 < 6.8320] w=0.1152 to align # Constraint # added constraint: constraint((T0289)L149.CB, (T0289)I176.CB) [> 4.2224 = 7.0373 < 9.1484] w=0.1152 to align # Constraint # added constraint: constraint((T0289)D106.CB, (T0289)I169.CB) [> 3.5250 = 5.8750 < 7.6375] w=0.1152 to align # Constraint # added constraint: constraint((T0289)M146.CB, (T0289)V174.CB) [> 4.4595 = 7.4325 < 9.6623] w=0.1151 to align # Constraint # added constraint: constraint((T0289)A6.CB, (T0289)A107.CB) [> 3.8452 = 6.4086 < 8.3312] w=0.1150 to align # Constraint # added constraint: constraint((T0289)H20.CB, (T0289)T117.CB) [> 4.6369 = 7.7282 < 10.0467] w=0.1150 to align # Constraint # added constraint: constraint((T0289)G21.CA, (T0289)R55.CB) [> 4.7916 = 7.9860 < 10.3818] w=0.1150 to align # Constraint # added constraint: constraint((T0289)T52.CB, (T0289)D113.CB) [> 4.6689 = 7.7815 < 10.1160] w=0.1150 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)V110.CB) [> 4.7896 = 7.9827 < 10.3776] w=0.1150 to align # Constraint # added constraint: constraint((T0289)Q137.CB, (T0289)Y172.CB) [> 4.3827 = 7.3045 < 9.4958] w=0.1149 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)V153.CB) [> 4.2915 = 7.1525 < 9.2982] w=0.1147 to align # Constraint # added constraint: constraint((T0289)E128.CB, (T0289)P173.CB) [> 3.8602 = 6.4337 < 8.3638] w=0.1146 to align # Constraint # added constraint: constraint((T0289)E128.CB, (T0289)T166.CB) [> 3.2720 = 5.4533 < 7.0893] w=0.1146 to align # Constraint # added constraint: constraint((T0289)V110.CB, (T0289)M138.CB) [> 4.3946 = 7.3243 < 9.5216] w=0.1146 to align # Constraint # added constraint: constraint((T0289)M146.CB, (T0289)I176.CB) [> 4.0120 = 6.6867 < 8.6927] w=0.1144 to align # Constraint # added constraint: constraint((T0289)D113.CB, (T0289)T165.CB) [> 3.8364 = 6.3939 < 8.3121] w=0.1143 to align # Constraint # added constraint: constraint((T0289)P180.CB, (T0289)I190.CB) [> 3.8515 = 6.4192 < 8.3450] w=0.1030 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)M138.CB) [> 3.6163 = 6.0271 < 7.8352] w=0.0977 to align # Constraint # added constraint: constraint((T0289)T117.CB, (T0289)D250.CB) [> 4.2852 = 7.1420 < 9.2847] w=0.0960 to align # Constraint # added constraint: constraint((T0289)T124.CB, (T0289)G179.CA) [> 3.5163 = 5.8605 < 7.6186] w=0.0960 to align # Constraint # added constraint: constraint((T0289)T124.CB, (T0289)V178.CB) [> 3.6398 = 6.0663 < 7.8862] w=0.0960 to align # Constraint # added constraint: constraint((T0289)E8.CB, (T0289)D105.CB) [> 4.2425 = 7.0709 < 9.1922] w=0.0960 to align # Constraint # added constraint: constraint((T0289)E8.CB, (T0289)D106.CB) [> 4.2264 = 7.0440 < 9.1572] w=0.0960 to align # Constraint # added constraint: constraint((T0289)L254.CB, (T0289)T276.CB) [> 3.9787 = 6.6311 < 8.6204] w=0.0960 to align # Constraint # added constraint: constraint((T0289)L254.CB, (T0289)C275.CB) [> 3.0601 = 5.1001 < 6.6301] w=0.0960 to align # Constraint # added constraint: constraint((T0289)L254.CB, (T0289)G273.CA) [> 4.0536 = 6.7560 < 8.7828] w=0.0960 to align # Constraint # added constraint: constraint((T0289)P253.CB, (T0289)C275.CB) [> 4.0166 = 6.6943 < 8.7026] w=0.0960 to align # Constraint # added constraint: constraint((T0289)P253.CB, (T0289)D274.CB) [> 4.6151 = 7.6919 < 9.9995] w=0.0960 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)Y278.CB) [> 4.5546 = 7.5910 < 9.8683] w=0.0960 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)W251.CB) [> 4.4675 = 7.4459 < 9.6797] w=0.0960 to align # Constraint # added constraint: constraint((T0289)S152.CB, (T0289)V221.CB) [> 3.7347 = 6.2245 < 8.0918] w=0.0960 to align # Constraint # added constraint: constraint((T0289)E8.CB, (T0289)A107.CB) [> 3.6357 = 6.0594 < 7.8773] w=0.0960 to align # Constraint # added constraint: constraint((T0289)F50.CB, (T0289)R91.CB) [> 4.3053 = 7.1755 < 9.3282] w=0.0960 to align # Constraint # added constraint: constraint((T0289)Y172.CB, (T0289)F208.CB) [> 3.5651 = 5.9418 < 7.7243] w=0.0960 to align # Constraint # added constraint: constraint((T0289)L254.CB, (T0289)I269.CB) [> 3.1311 = 5.2186 < 6.7841] w=0.0959 to align # Constraint # added constraint: constraint((T0289)T25.CB, (T0289)R187.CB) [> 4.5735 = 7.6224 < 9.9092] w=0.0959 to align # Constraint # added constraint: constraint((T0289)C60.CB, (T0289)H183.CB) [> 4.1756 = 6.9593 < 9.0470] w=0.0959 to align # Constraint # added constraint: constraint((T0289)D258.CB, (T0289)L271.CB) [> 4.2055 = 7.0092 < 9.1120] w=0.0959 to align # Constraint # added constraint: constraint((T0289)C151.CB, (T0289)A201.CB) [> 4.6777 = 7.7962 < 10.1351] w=0.0959 to align # Constraint # added constraint: constraint((T0289)A6.CB, (T0289)A43.CB) [> 3.5903 = 5.9838 < 7.7789] w=0.0958 to align # Constraint # added constraint: constraint((T0289)S130.CB, (T0289)L155.CB) [> 4.2141 = 7.0234 < 9.1305] w=0.0957 to align # Constraint # added constraint: constraint((T0289)I269.CB, (T0289)P279.CB) [> 3.5102 = 5.8503 < 7.6054] w=0.0955 to align # Constraint # added constraint: constraint((T0289)L246.CB, (T0289)P279.CB) [> 4.0037 = 6.6729 < 8.6747] w=0.0954 to align # Constraint # added constraint: constraint((T0289)G122.CA, (T0289)G179.CA) [> 3.2182 = 5.3637 < 6.9728] w=0.0951 to align # Constraint # added constraint: constraint((T0289)G122.CA, (T0289)L149.CB) [> 2.9044 = 4.8407 < 6.2929] w=0.0951 to align # Constraint # added constraint: constraint((T0289)T124.CB, (T0289)V153.CB) [> 3.7905 = 6.3174 < 8.2127] w=0.0854 to align # Constraint # added constraint: constraint((T0289)V260.CB, (T0289)F281.CB) [> 4.6180 = 7.6966 < 10.0056] w=0.0843 to align # Constraint # added constraint: constraint((T0289)V260.CB, (T0289)P279.CB) [> 4.1593 = 6.9322 < 9.0118] w=0.0843 to align # Constraint # added constraint: constraint((T0289)L125.CB, (T0289)L149.CB) [> 3.6060 = 6.0099 < 7.8129] w=0.0787 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)Y172.CB) [> 4.5948 = 7.6580 < 9.9555] w=0.0787 to align # Constraint # added constraint: constraint((T0289)V241.CB, (T0289)V260.CB) [> 4.0405 = 6.7342 < 8.7545] w=0.0786 to align # Constraint # added constraint: constraint((T0289)C66.CB, (T0289)V89.CB) [> 4.4854 = 7.4757 < 9.7184] w=0.0768 to align # Constraint # added constraint: constraint((T0289)G122.CA, (T0289)W251.CB) [> 3.7381 = 6.2301 < 8.0991] w=0.0768 to align # Constraint # added constraint: constraint((T0289)R55.CB, (T0289)Y87.CB) [> 4.3181 = 7.1969 < 9.3559] w=0.0768 to align # Constraint # added constraint: constraint((T0289)N53.CB, (T0289)R91.CB) [> 3.7839 = 6.3064 < 8.1984] w=0.0768 to align # Constraint # added constraint: constraint((T0289)G257.CA, (T0289)P270.CB) [> 3.7220 = 6.2033 < 8.0643] w=0.0768 to align # Constraint # added constraint: constraint((T0289)P253.CB, (T0289)T276.CB) [> 3.4397 = 5.7329 < 7.4527] w=0.0768 to align # Constraint # added constraint: constraint((T0289)W251.CB, (T0289)V277.CB) [> 4.0753 = 6.7922 < 8.8299] w=0.0768 to align # Constraint # added constraint: constraint((T0289)W251.CB, (T0289)T276.CB) [> 3.0279 = 5.0466 < 6.5605] w=0.0768 to align # Constraint # added constraint: constraint((T0289)M225.CB, (T0289)C275.CB) [> 3.7175 = 6.1958 < 8.0546] w=0.0768 to align # Constraint # added constraint: constraint((T0289)Y154.CB, (T0289)Y222.CB) [> 4.0073 = 6.6788 < 8.6825] w=0.0768 to align # Constraint # added constraint: constraint((T0289)Y154.CB, (T0289)V221.CB) [> 3.8684 = 6.4474 < 8.3816] w=0.0768 to align # Constraint # added constraint: constraint((T0289)V153.CB, (T0289)V221.CB) [> 4.3484 = 7.2473 < 9.4214] w=0.0768 to align # Constraint # added constraint: constraint((T0289)S152.CB, (T0289)I219.CB) [> 3.3984 = 5.6640 < 7.3632] w=0.0768 to align # Constraint # added constraint: constraint((T0289)C151.CB, (T0289)W251.CB) [> 4.2056 = 7.0093 < 9.1121] w=0.0768 to align # Constraint # added constraint: constraint((T0289)E128.CB, (T0289)S152.CB) [> 3.4901 = 5.8169 < 7.5619] w=0.0768 to align # Constraint # added constraint: constraint((T0289)C4.CB, (T0289)A43.CB) [> 4.6151 = 7.6919 < 9.9994] w=0.0768 to align # Constraint # added constraint: constraint((T0289)L74.CB, (T0289)T166.CB) [> 4.5584 = 7.5973 < 9.8765] w=0.0768 to align # Constraint # added constraint: constraint((T0289)D258.CB, (T0289)I269.CB) [> 2.9181 = 4.8634 < 6.3225] w=0.0767 to align # Constraint # added constraint: constraint((T0289)P259.CB, (T0289)V268.CB) [> 3.2562 = 5.4269 < 7.0550] w=0.0767 to align # Constraint # added constraint: constraint((T0289)F112.CB, (T0289)M121.CB) [> 4.7290 = 7.8816 < 10.2461] w=0.0767 to align # Constraint # added constraint: constraint((T0289)L77.CB, (T0289)L127.CB) [> 4.1750 = 6.9584 < 9.0459] w=0.0767 to align # Constraint # added constraint: constraint((T0289)E8.CB, (T0289)D237.CB) [> 3.7373 = 6.2288 < 8.0975] w=0.0767 to align # Constraint # added constraint: constraint((T0289)E8.CB, (T0289)G236.CA) [> 3.4911 = 5.8185 < 7.5641] w=0.0767 to align # Constraint # added constraint: constraint((T0289)E8.CB, (T0289)S235.CB) [> 3.1833 = 5.3055 < 6.8972] w=0.0767 to align # Constraint # added constraint: constraint((T0289)E8.CB, (T0289)E234.CB) [> 4.2798 = 7.1330 < 9.2729] w=0.0767 to align # Constraint # added constraint: constraint((T0289)A6.CB, (T0289)E234.CB) [> 4.3123 = 7.1872 < 9.3433] w=0.0767 to align # Constraint # added constraint: constraint((T0289)V262.CB, (T0289)F281.CB) [> 2.0369 = 3.3949 < 4.4134] w=0.0767 to align # Constraint # added constraint: constraint((T0289)P244.CB, (T0289)L271.CB) [> 3.7071 = 6.1786 < 8.0322] w=0.0767 to align # Constraint # added constraint: constraint((T0289)H243.CB, (T0289)L271.CB) [> 3.5125 = 5.8542 < 7.6105] w=0.0767 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)V260.CB) [> 4.1300 = 6.8834 < 8.9484] w=0.0767 to align # Constraint # added constraint: constraint((T0289)D220.CB, (T0289)S263.CB) [> 3.9904 = 6.6507 < 8.6460] w=0.0767 to align # Constraint # added constraint: constraint((T0289)A218.CB, (T0289)N233.CB) [> 4.4721 = 7.4536 < 9.6896] w=0.0767 to align # Constraint # added constraint: constraint((T0289)F208.CB, (T0289)V277.CB) [> 4.4323 = 7.3871 < 9.6032] w=0.0767 to align # Constraint # added constraint: constraint((T0289)F208.CB, (T0289)T276.CB) [> 3.5023 = 5.8372 < 7.5883] w=0.0767 to align # Constraint # added constraint: constraint((T0289)F208.CB, (T0289)H243.CB) [> 3.1650 = 5.2751 < 6.8576] w=0.0767 to align # Constraint # added constraint: constraint((T0289)F208.CB, (T0289)V241.CB) [> 3.0991 = 5.1652 < 6.7147] w=0.0767 to align # Constraint # added constraint: constraint((T0289)F208.CB, (T0289)A240.CB) [> 4.0010 = 6.6684 < 8.6689] w=0.0767 to align # Constraint # added constraint: constraint((T0289)R207.CB, (T0289)C275.CB) [> 3.8754 = 6.4590 < 8.3967] w=0.0767 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)H243.CB) [> 3.5172 = 5.8620 < 7.6207] w=0.0767 to align # Constraint # added constraint: constraint((T0289)F112.CB, (T0289)Y172.CB) [> 4.7670 = 7.9450 < 10.3285] w=0.0766 to align # Constraint # added constraint: constraint((T0289)I242.CB, (T0289)V282.CB) [> 3.6781 = 6.1301 < 7.9691] w=0.0765 to align # Constraint # added constraint: constraint((T0289)P259.CB, (T0289)I269.CB) [> 3.9665 = 6.6108 < 8.5941] w=0.0764 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)L98.CB) [> 4.6566 = 7.7610 < 10.0893] w=0.0762 to align # Constraint # added constraint: constraint((T0289)W33.CB, (T0289)A201.CB) [> 3.5036 = 5.8393 < 7.5911] w=0.0758 to align # Constraint # added constraint: constraint((T0289)T166.CB, (T0289)G175.CA) [> 4.1679 = 6.9465 < 9.0304] w=0.0643 to align # Constraint # added constraint: constraint((T0289)T165.CB, (T0289)G175.CA) [> 4.1402 = 6.9003 < 8.9704] w=0.0643 to align # Constraint # added constraint: constraint((T0289)L125.CB, (T0289)Y154.CB) [> 3.4552 = 5.7586 < 7.4862] w=0.0643 to align # Constraint # added constraint: constraint((T0289)Y154.CB, (T0289)G175.CA) [> 4.6451 = 7.7418 < 10.0644] w=0.0614 to align # Constraint # added constraint: constraint((T0289)F16.CB, (T0289)I51.CB) [> 4.2875 = 7.1459 < 9.2896] w=0.0606 to align # Constraint # added constraint: constraint((T0289)V241.CB, (T0289)F261.CB) [> 3.5129 = 5.8549 < 7.6113] w=0.0595 to align # Constraint # added constraint: constraint((T0289)A240.CB, (T0289)V260.CB) [> 4.1944 = 6.9907 < 9.0879] w=0.0594 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)P173.CB) [> 4.7367 = 7.8945 < 10.2628] w=0.0576 to align # Constraint # added constraint: constraint((T0289)P9.CB, (T0289)Y108.CB) [> 4.2331 = 7.0551 < 9.1716] w=0.0576 to align # Constraint # added constraint: constraint((T0289)G257.CA, (T0289)I269.CB) [> 2.9467 = 4.9112 < 6.3846] w=0.0576 to align # Constraint # added constraint: constraint((T0289)V238.CB, (T0289)V262.CB) [> 4.5434 = 7.5723 < 9.8440] w=0.0576 to align # Constraint # added constraint: constraint((T0289)E128.CB, (T0289)G175.CA) [> 4.6035 = 7.6725 < 9.9743] w=0.0576 to align # Constraint # added constraint: constraint((T0289)S3.CB, (T0289)E46.CB) [> 3.8669 = 6.4449 < 8.3783] w=0.0576 to align # Constraint # added constraint: constraint((T0289)T19.CB, (T0289)A92.CB) [> 4.6253 = 7.7089 < 10.0216] w=0.0576 to align # Constraint # added constraint: constraint((T0289)T19.CB, (T0289)V89.CB) [> 4.6137 = 7.6895 < 9.9964] w=0.0576 to align # Constraint # added constraint: constraint((T0289)P259.CB, (T0289)L271.CB) [> 3.4391 = 5.7318 < 7.4514] w=0.0576 to align # Constraint # added constraint: constraint((T0289)A240.CB, (T0289)F261.CB) [> 3.5929 = 5.9881 < 7.7846] w=0.0576 to align # Constraint # added constraint: constraint((T0289)A239.CB, (T0289)V262.CB) [> 4.0967 = 6.8278 < 8.8761] w=0.0576 to align # Constraint # added constraint: constraint((T0289)V238.CB, (T0289)L264.CB) [> 3.9781 = 6.6301 < 8.6191] w=0.0576 to align # Constraint # added constraint: constraint((T0289)D237.CB, (T0289)L264.CB) [> 3.2046 = 5.3409 < 6.9432] w=0.0576 to align # Constraint # added constraint: constraint((T0289)V228.CB, (T0289)V260.CB) [> 3.2306 = 5.3843 < 6.9995] w=0.0576 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)T276.CB) [> 4.2168 = 7.0280 < 9.1364] w=0.0576 to align # Constraint # added constraint: constraint((T0289)Y108.CB, (T0289)Y172.CB) [> 4.1999 = 6.9999 < 9.0999] w=0.0576 to align # Constraint # added constraint: constraint((T0289)V153.CB, (T0289)I224.CB) [> 4.3789 = 7.2982 < 9.4876] w=0.0576 to align # Constraint # added constraint: constraint((T0289)Y154.CB, (T0289)I224.CB) [> 4.4086 = 7.3477 < 9.5520] w=0.0576 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)C151.CB) [> 4.7842 = 7.9737 < 10.3658] w=0.0576 to align # Constraint # added constraint: constraint((T0289)T25.CB, (T0289)I176.CB) [> 4.6871 = 7.8118 < 10.1554] w=0.0576 to align # Constraint # added constraint: constraint((T0289)E8.CB, (T0289)E46.CB) [> 4.0161 = 6.6936 < 8.7016] w=0.0576 to align # Constraint # added constraint: constraint((T0289)T19.CB, (T0289)D67.CB) [> 4.7456 = 7.9093 < 10.2820] w=0.0576 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)A201.CB) [> 4.3925 = 7.3208 < 9.5170] w=0.0576 to align # Constraint # added constraint: constraint((T0289)T31.CB, (T0289)F50.CB) [> 3.3908 = 5.6514 < 7.3468] w=0.0575 to align # Constraint # added constraint: constraint((T0289)L34.CB, (T0289)K48.CB) [> 3.5690 = 5.9483 < 7.7328] w=0.0575 to align # Constraint # added constraint: constraint((T0289)L34.CB, (T0289)F50.CB) [> 4.6178 = 7.6963 < 10.0052] w=0.0575 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)P180.CB) [> 3.8726 = 6.4543 < 8.3906] w=0.0575 to align # Constraint # added constraint: constraint((T0289)A6.CB, (T0289)S235.CB) [> 4.4497 = 7.4163 < 9.6411] w=0.0575 to align # Constraint # added constraint: constraint((T0289)C217.CB, (T0289)L264.CB) [> 2.7427 = 4.5711 < 5.9425] w=0.0575 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)A239.CB) [> 3.5168 = 5.8614 < 7.6198] w=0.0575 to align # Constraint # added constraint: constraint((T0289)P253.CB, (T0289)I269.CB) [> 4.2964 = 7.1607 < 9.3089] w=0.0575 to align # Constraint # added constraint: constraint((T0289)P253.CB, (T0289)P270.CB) [> 3.0304 = 5.0507 < 6.5658] w=0.0575 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)A147.CB) [> 3.0989 = 5.1649 < 6.7144] w=0.0575 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)E46.CB) [> 4.1196 = 6.8659 < 8.9257] w=0.0575 to align # Constraint # added constraint: constraint((T0289)R62.CB, (T0289)L186.CB) [> 4.5843 = 7.6404 < 9.9326] w=0.0575 to align # Constraint # added constraint: constraint((T0289)R70.CB, (T0289)L85.CB) [> 4.2918 = 7.1530 < 9.2989] w=0.0575 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)P173.CB) [> 4.6727 = 7.7878 < 10.1241] w=0.0575 to align # Constraint # added constraint: constraint((T0289)E8.CB, (T0289)E213.CB) [> 4.0502 = 6.7503 < 8.7754] w=0.0575 to align # Constraint # added constraint: constraint((T0289)E213.CB, (T0289)S235.CB) [> 3.7479 = 6.2466 < 8.1205] w=0.0575 to align # Constraint # added constraint: constraint((T0289)F214.CB, (T0289)L264.CB) [> 3.1537 = 5.2562 < 6.8331] w=0.0575 to align # Constraint # added constraint: constraint((T0289)I224.CB, (T0289)A240.CB) [> 4.1462 = 6.9103 < 8.9833] w=0.0575 to align # Constraint # added constraint: constraint((T0289)A240.CB, (T0289)V282.CB) [> 3.6161 = 6.0268 < 7.8349] w=0.0573 to align # Constraint # added constraint: constraint((T0289)V241.CB, (T0289)V282.CB) [> 4.2499 = 7.0832 < 9.2082] w=0.0573 to align # Constraint # added constraint: constraint((T0289)Y230.CB, (T0289)A239.CB) [> 4.1210 = 6.8683 < 8.9287] w=0.0572 to align # Constraint # added constraint: constraint((T0289)I242.CB, (T0289)W251.CB) [> 3.8490 = 6.4150 < 8.3394] w=0.0570 to align # Constraint # added constraint: constraint((T0289)T31.CB, (T0289)L114.CB) [> 4.7824 = 7.9707 < 10.3619] w=0.0567 to align # Constraint # added constraint: constraint((T0289)L34.CB, (T0289)L114.CB) [> 2.7847 = 4.6411 < 6.0335] w=0.0567 to align # Constraint # added constraint: constraint((T0289)K35.CB, (T0289)P49.CB) [> 4.7213 = 7.8688 < 10.2295] w=0.0567 to align # Constraint # added constraint: constraint((T0289)L24.CB, (T0289)P180.CB) [> 4.7354 = 7.8923 < 10.2600] w=0.0567 to align # Constraint # added constraint: constraint((T0289)G18.CA, (T0289)D113.CB) [> 3.5282 = 5.8803 < 7.6444] w=0.0567 to align # Constraint # added constraint: constraint((T0289)G17.CA, (T0289)L34.CB) [> 3.1877 = 5.3128 < 6.9066] w=0.0567 to align # Constraint # added constraint: constraint((T0289)G17.CA, (T0289)T31.CB) [> 3.9945 = 6.6574 < 8.6546] w=0.0567 to align # Constraint # added constraint: constraint((T0289)F16.CB, (T0289)L34.CB) [> 4.6022 = 7.6704 < 9.9715] w=0.0567 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)A38.CB) [> 3.6356 = 6.0593 < 7.8771] w=0.0567 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)G37.CA) [> 4.5493 = 7.5822 < 9.8569] w=0.0567 to align # Constraint # added constraint: constraint((T0289)I13.CB, (T0289)H41.CB) [> 3.3568 = 5.5946 < 7.2730] w=0.0567 to align # Constraint # added constraint: constraint((T0289)V178.CB, (T0289)A201.CB) [> 4.1185 = 6.8641 < 8.9233] w=0.0567 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)G179.CA) [> 4.7304 = 7.8840 < 10.2493] w=0.0567 to align # Constraint # added constraint: constraint((T0289)G37.CA, (T0289)A201.CB) [> 4.3283 = 7.2138 < 9.3779] w=0.0567 to align # Constraint # added constraint: constraint((T0289)A38.CB, (T0289)V47.CB) [> 2.9415 = 4.9025 < 6.3733] w=0.0567 to align # Constraint # added constraint: constraint((T0289)Y154.CB, (T0289)A164.CB) [> 4.6336 = 7.7227 < 10.0395] w=0.0536 to align # Constraint # added constraint: constraint((T0289)S152.CB, (T0289)V174.CB) [> 4.5559 = 7.5931 < 9.8710] w=0.0422 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)Y154.CB) [> 4.7377 = 7.8962 < 10.2650] w=0.0422 to align # Constraint # added constraint: constraint((T0289)A240.CB, (T0289)C275.CB) [> 3.4021 = 5.6702 < 7.3713] w=0.0402 to align # Constraint # added constraint: constraint((T0289)S82.CB, (T0289)E94.CB) [> 3.5838 = 5.9730 < 7.7649] w=0.0402 to align # Constraint # added constraint: constraint((T0289)S235.CB, (T0289)H255.CB) [> 4.3847 = 7.3079 < 9.5002] w=0.0397 to align # Constraint # added constraint: constraint((T0289)C123.CB, (T0289)I176.CB) [> 4.4066 = 7.3444 < 9.5477] w=0.0384 to align # Constraint # added constraint: constraint((T0289)L125.CB, (T0289)P148.CB) [> 3.1573 = 5.2622 < 6.8408] w=0.0384 to align # Constraint # added constraint: constraint((T0289)T118.CB, (T0289)N245.CB) [> 3.5988 = 5.9980 < 7.7975] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V238.CB, (T0289)E284.CB) [> 4.1796 = 6.9660 < 9.0558] w=0.0384 to align # Constraint # added constraint: constraint((T0289)T31.CB, (T0289)P49.CB) [> 4.7945 = 7.9909 < 10.3882] w=0.0384 to align # Constraint # added constraint: constraint((T0289)A14.CB, (T0289)E46.CB) [> 4.5411 = 7.5685 < 9.8391] w=0.0384 to align # Constraint # added constraint: constraint((T0289)P54.CB, (T0289)R91.CB) [> 4.5603 = 7.6005 < 9.8806] w=0.0384 to align # Constraint # added constraint: constraint((T0289)W251.CB, (T0289)V280.CB) [> 3.6427 = 6.0712 < 7.8926] w=0.0384 to align # Constraint # added constraint: constraint((T0289)L246.CB, (T0289)V282.CB) [> 3.6231 = 6.0385 < 7.8500] w=0.0384 to align # Constraint # added constraint: constraint((T0289)I242.CB, (T0289)V280.CB) [> 3.9180 = 6.5300 < 8.4891] w=0.0384 to align # Constraint # added constraint: constraint((T0289)I242.CB, (T0289)F261.CB) [> 3.3206 = 5.5343 < 7.1946] w=0.0384 to align # Constraint # added constraint: constraint((T0289)I242.CB, (T0289)V260.CB) [> 3.8783 = 6.4638 < 8.4029] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V241.CB, (T0289)V262.CB) [> 3.6907 = 6.1511 < 7.9965] w=0.0384 to align # Constraint # added constraint: constraint((T0289)A240.CB, (T0289)V262.CB) [> 3.4447 = 5.7411 < 7.4634] w=0.0384 to align # Constraint # added constraint: constraint((T0289)D237.CB, (T0289)S263.CB) [> 4.1860 = 6.9767 < 9.0697] w=0.0384 to align # Constraint # added constraint: constraint((T0289)S235.CB, (T0289)E284.CB) [> 3.5780 = 5.9633 < 7.7523] w=0.0384 to align # Constraint # added constraint: constraint((T0289)S235.CB, (T0289)L264.CB) [> 2.6888 = 4.4813 < 5.8257] w=0.0384 to align # Constraint # added constraint: constraint((T0289)S235.CB, (T0289)S263.CB) [> 3.9939 = 6.6565 < 8.6534] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V228.CB, (T0289)A295.CB) [> 3.9286 = 6.5477 < 8.5120] w=0.0384 to align # Constraint # added constraint: constraint((T0289)N283.CB, (T0289)A293.CB) [> 3.8479 = 6.4132 < 8.3371] w=0.0384 to align # Constraint # added constraint: constraint((T0289)N283.CB, (T0289)E292.CB) [> 3.4557 = 5.7596 < 7.4874] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V282.CB, (T0289)A293.CB) [> 2.7534 = 4.5890 < 5.9658] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V282.CB, (T0289)E292.CB) [> 4.3117 = 7.1861 < 9.3420] w=0.0384 to align # Constraint # added constraint: constraint((T0289)F281.CB, (T0289)F294.CB) [> 3.4640 = 5.7734 < 7.5054] w=0.0384 to align # Constraint # added constraint: constraint((T0289)F281.CB, (T0289)A293.CB) [> 3.2903 = 5.4838 < 7.1289] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V280.CB, (T0289)K296.CB) [> 3.0851 = 5.1418 < 6.6843] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V280.CB, (T0289)A295.CB) [> 4.5000 = 7.4999 < 9.7499] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V280.CB, (T0289)F294.CB) [> 2.8173 = 4.6955 < 6.1042] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V280.CB, (T0289)A293.CB) [> 3.8573 = 6.4288 < 8.3574] w=0.0384 to align # Constraint # added constraint: constraint((T0289)P279.CB, (T0289)K296.CB) [> 4.6825 = 7.8042 < 10.1455] w=0.0384 to align # Constraint # added constraint: constraint((T0289)P279.CB, (T0289)A293.CB) [> 3.5429 = 5.9049 < 7.6764] w=0.0384 to align # Constraint # added constraint: constraint((T0289)Y278.CB, (T0289)T297.CB) [> 4.1139 = 6.8566 < 8.9136] w=0.0384 to align # Constraint # added constraint: constraint((T0289)Y278.CB, (T0289)K296.CB) [> 3.0272 = 5.0453 < 6.5589] w=0.0384 to align # Constraint # added constraint: constraint((T0289)Y278.CB, (T0289)A295.CB) [> 4.2659 = 7.1098 < 9.2427] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V260.CB, (T0289)P270.CB) [> 3.4706 = 5.7844 < 7.5197] w=0.0384 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)K296.CB) [> 2.5814 = 4.3024 < 5.5931] w=0.0384 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)V280.CB) [> 4.6908 = 7.8180 < 10.1634] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V221.CB, (T0289)K299.CB) [> 2.6951 = 4.4917 < 5.8393] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V153.CB, (T0289)V280.CB) [> 4.1933 = 6.9889 < 9.0855] w=0.0384 to align # Constraint # added constraint: constraint((T0289)S152.CB, (T0289)Y278.CB) [> 4.1871 = 6.9784 < 9.0720] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V228.CB, (T0289)F294.CB) [> 4.2299 = 7.0498 < 9.1648] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V228.CB, (T0289)A293.CB) [> 3.0403 = 5.0671 < 6.5873] w=0.0384 to align # Constraint # added constraint: constraint((T0289)V228.CB, (T0289)E292.CB) [> 3.0448 = 5.0746 < 6.5970] w=0.0384 to align # Constraint # added constraint: constraint((T0289)K227.CB, (T0289)A295.CB) [> 4.4746 = 7.4577 < 9.6950] w=0.0384 to align # Constraint # added constraint: constraint((T0289)K227.CB, (T0289)A293.CB) [> 4.5528 = 7.5879 < 9.8643] w=0.0384 to align # Constraint # added constraint: constraint((T0289)E226.CB, (T0289)A295.CB) [> 2.8991 = 4.8319 < 6.2815] w=0.0384 to align # Constraint # added constraint: constraint((T0289)M225.CB, (T0289)T297.CB) [> 2.8908 = 4.8181 < 6.2635] w=0.0384 to align # Constraint # added constraint: constraint((T0289)M225.CB, (T0289)K296.CB) [> 3.6107 = 6.0179 < 7.8232] w=0.0384 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)T297.CB) [> 4.0017 = 6.6695 < 8.6704] w=0.0384 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)T298.CB) [> 3.8116 = 6.3527 < 8.2585] w=0.0384 to align # Constraint # added constraint: constraint((T0289)I224.CB, (T0289)Y278.CB) [> 4.5587 = 7.5979 < 9.8772] w=0.0384 to align # Constraint # added constraint: constraint((T0289)I224.CB, (T0289)F294.CB) [> 3.1473 = 5.2455 < 6.8192] w=0.0384 to align # Constraint # added constraint: constraint((T0289)M225.CB, (T0289)G272.CA) [> 4.4338 = 7.3897 < 9.6066] w=0.0384 to align # Constraint # added constraint: constraint((T0289)M225.CB, (T0289)A295.CB) [> 2.7492 = 4.5820 < 5.9566] w=0.0384 to align # Constraint # added constraint: constraint((T0289)S3.CB, (T0289)P49.CB) [> 3.3838 = 5.6396 < 7.3315] w=0.0384 to align # Constraint # added constraint: constraint((T0289)S3.CB, (T0289)K48.CB) [> 4.6646 = 7.7743 < 10.1066] w=0.0384 to align # Constraint # added constraint: constraint((T0289)S3.CB, (T0289)V47.CB) [> 2.6096 = 4.3493 < 5.6541] w=0.0384 to align # Constraint # added constraint: constraint((T0289)S3.CB, (T0289)G37.CA) [> 4.0010 = 6.6683 < 8.6688] w=0.0384 to align # Constraint # added constraint: constraint((T0289)T61.CB, (T0289)M81.CB) [> 3.1291 = 5.2152 < 6.7798] w=0.0384 to align # Constraint # added constraint: constraint((T0289)Y172.CB, (T0289)R207.CB) [> 4.7193 = 7.8655 < 10.2252] w=0.0384 to align # Constraint # added constraint: constraint((T0289)R55.CB, (T0289)A92.CB) [> 4.7566 = 7.9276 < 10.3059] w=0.0384 to align # Constraint # added constraint: constraint((T0289)P54.CB, (T0289)A92.CB) [> 4.4677 = 7.4462 < 9.6801] w=0.0384 to align # Constraint # added constraint: constraint((T0289)Y172.CB, (T0289)V241.CB) [> 3.5238 = 5.8730 < 7.6349] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y141.CB, (T0289)V280.CB) [> 3.2633 = 5.4388 < 7.0704] w=0.0383 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)P279.CB) [> 3.7997 = 6.3329 < 8.2328] w=0.0383 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)Y278.CB) [> 2.9523 = 4.9206 < 6.3968] w=0.0383 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)V241.CB) [> 3.0104 = 5.0173 < 6.5225] w=0.0383 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)I219.CB) [> 4.4381 = 7.3968 < 9.6159] w=0.0383 to align # Constraint # added constraint: constraint((T0289)C217.CB, (T0289)A239.CB) [> 4.1951 = 6.9918 < 9.0894] w=0.0383 to align # Constraint # added constraint: constraint((T0289)C217.CB, (T0289)N233.CB) [> 2.4533 = 4.0888 < 5.3154] w=0.0383 to align # Constraint # added constraint: constraint((T0289)P215.CB, (T0289)S235.CB) [> 3.2323 = 5.3872 < 7.0033] w=0.0383 to align # Constraint # added constraint: constraint((T0289)F214.CB, (T0289)N233.CB) [> 3.8761 = 6.4602 < 8.3982] w=0.0383 to align # Constraint # added constraint: constraint((T0289)E213.CB, (T0289)V238.CB) [> 3.8836 = 6.4727 < 8.4145] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y172.CB, (T0289)Y278.CB) [> 3.4490 = 5.7484 < 7.4729] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y172.CB, (T0289)I242.CB) [> 3.4502 = 5.7503 < 7.4754] w=0.0383 to align # Constraint # added constraint: constraint((T0289)L77.CB, (T0289)Y163.CB) [> 3.8687 = 6.4478 < 8.3822] w=0.0383 to align # Constraint # added constraint: constraint((T0289)C60.CB, (T0289)V185.CB) [> 3.4262 = 5.7103 < 7.4234] w=0.0383 to align # Constraint # added constraint: constraint((T0289)F28.CB, (T0289)F50.CB) [> 4.7254 = 7.8756 < 10.2383] w=0.0383 to align # Constraint # added constraint: constraint((T0289)E8.CB, (T0289)D274.CB) [> 2.7823 = 4.6372 < 6.0283] w=0.0383 to align # Constraint # added constraint: constraint((T0289)E8.CB, (T0289)G273.CA) [> 4.2311 = 7.0519 < 9.1674] w=0.0383 to align # Constraint # added constraint: constraint((T0289)E8.CB, (T0289)P270.CB) [> 4.0236 = 6.7059 < 8.7177] w=0.0383 to align # Constraint # added constraint: constraint((T0289)E8.CB, (T0289)V238.CB) [> 2.7865 = 4.6441 < 6.0374] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V110.CB, (T0289)Y278.CB) [> 4.3431 = 7.2385 < 9.4100] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V110.CB, (T0289)I242.CB) [> 4.3331 = 7.2218 < 9.3884] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V282.CB, (T0289)L302.CB) [> 3.3211 = 5.5352 < 7.1957] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V282.CB, (T0289)T301.CB) [> 4.6601 = 7.7668 < 10.0968] w=0.0383 to align # Constraint # added constraint: constraint((T0289)F281.CB, (T0289)A304.CB) [> 2.7903 = 4.6506 < 6.0457] w=0.0383 to align # Constraint # added constraint: constraint((T0289)F281.CB, (T0289)N303.CB) [> 3.1736 = 5.2893 < 6.8761] w=0.0383 to align # Constraint # added constraint: constraint((T0289)F281.CB, (T0289)L302.CB) [> 3.2364 = 5.3940 < 7.0122] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V280.CB, (T0289)L302.CB) [> 4.1135 = 6.8558 < 8.9125] w=0.0383 to align # Constraint # added constraint: constraint((T0289)P279.CB, (T0289)L302.CB) [> 2.8529 = 4.7548 < 6.1813] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V277.CB, (T0289)A286.CB) [> 4.5043 = 7.5072 < 9.7594] w=0.0383 to align # Constraint # added constraint: constraint((T0289)K267.CB, (T0289)F281.CB) [> 4.2631 = 7.1052 < 9.2367] w=0.0383 to align # Constraint # added constraint: constraint((T0289)N245.CB, (T0289)G273.CA) [> 2.4303 = 4.0505 < 5.2656] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y230.CB, (T0289)A240.CB) [> 3.0084 = 5.0141 < 6.5183] w=0.0383 to align # Constraint # added constraint: constraint((T0289)H243.CB, (T0289)E284.CB) [> 2.5066 = 4.1776 < 5.4309] w=0.0383 to align # Constraint # added constraint: constraint((T0289)H243.CB, (T0289)D258.CB) [> 3.7237 = 6.2061 < 8.0680] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V221.CB, (T0289)S309.CB) [> 3.8708 = 6.4513 < 8.3867] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V221.CB, (T0289)I307.CB) [> 3.9011 = 6.5019 < 8.4524] w=0.0383 to align # Constraint # added constraint: constraint((T0289)L300.CB, (T0289)T310.CB) [> 3.4144 = 5.6907 < 7.3979] w=0.0383 to align # Constraint # added constraint: constraint((T0289)T298.CB, (T0289)T310.CB) [> 3.5615 = 5.9359 < 7.7167] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y288.CB, (T0289)T297.CB) [> 4.6448 = 7.7413 < 10.0636] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y287.CB, (T0289)T297.CB) [> 2.5422 = 4.2370 < 5.5081] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y287.CB, (T0289)K296.CB) [> 4.0660 = 6.7767 < 8.8098] w=0.0383 to align # Constraint # added constraint: constraint((T0289)A286.CB, (T0289)T310.CB) [> 4.2458 = 7.0763 < 9.1992] w=0.0383 to align # Constraint # added constraint: constraint((T0289)A286.CB, (T0289)L300.CB) [> 3.0700 = 5.1167 < 6.6516] w=0.0383 to align # Constraint # added constraint: constraint((T0289)A286.CB, (T0289)T297.CB) [> 4.1383 = 6.8972 < 8.9663] w=0.0383 to align # Constraint # added constraint: constraint((T0289)A285.CB, (T0289)L300.CB) [> 4.4612 = 7.4353 < 9.6659] w=0.0383 to align # Constraint # added constraint: constraint((T0289)A285.CB, (T0289)K299.CB) [> 3.2230 = 5.3716 < 6.9831] w=0.0383 to align # Constraint # added constraint: constraint((T0289)E284.CB, (T0289)L302.CB) [> 3.9477 = 6.5795 < 8.5534] w=0.0383 to align # Constraint # added constraint: constraint((T0289)N283.CB, (T0289)L302.CB) [> 4.3415 = 7.2358 < 9.4065] w=0.0383 to align # Constraint # added constraint: constraint((T0289)N283.CB, (T0289)L300.CB) [> 4.2092 = 7.0153 < 9.1198] w=0.0383 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)R308.CB) [> 4.4064 = 7.3439 < 9.5471] w=0.0383 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)I307.CB) [> 3.5541 = 5.9234 < 7.7005] w=0.0383 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)V280.CB) [> 4.3799 = 7.2999 < 9.4899] w=0.0383 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)Y278.CB) [> 2.9154 = 4.8589 < 6.3166] w=0.0383 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)V277.CB) [> 3.3525 = 5.5875 < 7.2638] w=0.0383 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)D265.CB) [> 4.6926 = 7.8210 < 10.1673] w=0.0383 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)V262.CB) [> 3.6179 = 6.0299 < 7.8389] w=0.0383 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)F261.CB) [> 4.4988 = 7.4979 < 9.7473] w=0.0383 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)V260.CB) [> 3.7461 = 6.2435 < 8.1166] w=0.0383 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)R232.CB) [> 3.7531 = 6.2551 < 8.1317] w=0.0383 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)P231.CB) [> 3.6318 = 6.0530 < 7.8689] w=0.0383 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)D229.CB) [> 4.4886 = 7.4810 < 9.7253] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)F281.CB) [> 4.7278 = 7.8797 < 10.2436] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)V262.CB) [> 3.5149 = 5.8582 < 7.6156] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)F261.CB) [> 4.4343 = 7.3905 < 9.6077] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)P259.CB) [> 2.5261 = 4.2102 < 5.4732] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)A240.CB) [> 3.3430 = 5.5717 < 7.2432] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)V238.CB) [> 3.0368 = 5.0613 < 6.5797] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)R232.CB) [> 4.2835 = 7.1392 < 9.2809] w=0.0383 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)P231.CB) [> 4.4956 = 7.4927 < 9.7405] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V221.CB, (T0289)L264.CB) [> 4.0601 = 6.7668 < 8.7968] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V221.CB, (T0289)V262.CB) [> 4.4329 = 7.3882 < 9.6046] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V221.CB, (T0289)Y230.CB) [> 4.0887 = 6.8145 < 8.8589] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V221.CB, (T0289)P231.CB) [> 3.5742 = 5.9570 < 7.7440] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V221.CB, (T0289)R232.CB) [> 4.6528 = 7.7546 < 10.0810] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V221.CB, (T0289)H243.CB) [> 4.1453 = 6.9088 < 8.9814] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V221.CB, (T0289)P259.CB) [> 4.3898 = 7.3163 < 9.5112] w=0.0383 to align # Constraint # added constraint: constraint((T0289)V221.CB, (T0289)F261.CB) [> 4.7493 = 7.9155 < 10.2901] w=0.0383 to align # Constraint # added constraint: constraint((T0289)A240.CB, (T0289)P279.CB) [> 4.2715 = 7.1192 < 9.2549] w=0.0381 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)R187.CB) [> 3.0739 = 5.1231 < 6.6600] w=0.0378 to align # Constraint # added constraint: constraint((T0289)H41.CB, (T0289)F208.CB) [> 4.2627 = 7.1044 < 9.2358] w=0.0378 to align # Constraint # added constraint: constraint((T0289)A240.CB, (T0289)H255.CB) [> 4.6115 = 7.6858 < 9.9915] w=0.0378 to align # Constraint # added constraint: constraint((T0289)H243.CB, (T0289)V277.CB) [> 3.5422 = 5.9037 < 7.6747] w=0.0378 to align # Constraint # added constraint: constraint((T0289)P244.CB, (T0289)C275.CB) [> 4.2478 = 7.0797 < 9.2036] w=0.0378 to align # Constraint # added constraint: constraint((T0289)P244.CB, (T0289)T276.CB) [> 4.0913 = 6.8188 < 8.8644] w=0.0378 to align # Constraint # added constraint: constraint((T0289)L246.CB, (T0289)Y278.CB) [> 4.0723 = 6.7872 < 8.8234] w=0.0378 to align # Constraint # added constraint: constraint((T0289)S152.CB, (T0289)E177.CB) [> 4.7826 = 7.9710 < 10.3624] w=0.0378 to align # Constraint # added constraint: constraint((T0289)V238.CB, (T0289)H255.CB) [> 4.1396 = 6.8994 < 8.9692] w=0.0378 to align # Constraint # added constraint: constraint((T0289)V262.CB, (T0289)V277.CB) [> 3.5944 = 5.9907 < 7.7879] w=0.0268 to align # Constraint # added constraint: constraint((T0289)F261.CB, (T0289)P279.CB) [> 3.8632 = 6.4387 < 8.3703] w=0.0268 to align # Constraint # added constraint: constraint((T0289)V262.CB, (T0289)Y278.CB) [> 4.0466 = 6.7443 < 8.7676] w=0.0265 to align # Constraint # added constraint: constraint((T0289)C151.CB, (T0289)V174.CB) [> 4.2274 = 7.0457 < 9.1595] w=0.0230 to align # Constraint # added constraint: constraint((T0289)G18.CA, (T0289)P49.CB) [> 3.6040 = 6.0066 < 7.8086] w=0.0228 to align # Constraint # added constraint: constraint((T0289)T19.CB, (T0289)I51.CB) [> 4.7057 = 7.8429 < 10.1957] w=0.0228 to align # Constraint # added constraint: constraint((T0289)V27.CB, (T0289)P49.CB) [> 4.6402 = 7.7337 < 10.0538] w=0.0228 to align # Constraint # added constraint: constraint((T0289)F261.CB, (T0289)P270.CB) [> 4.0273 = 6.7122 < 8.7259] w=0.0211 to align # Constraint # added constraint: constraint((T0289)I126.CB, (T0289)M138.CB) [> 4.1428 = 6.9047 < 8.9761] w=0.0208 to align # Constraint # added constraint: constraint((T0289)C4.CB, (T0289)G37.CA) [> 4.1741 = 6.9568 < 9.0439] w=0.0192 to align # Constraint # added constraint: constraint((T0289)L264.CB, (T0289)P279.CB) [> 4.1889 = 6.9814 < 9.0759] w=0.0192 to align # Constraint # added constraint: constraint((T0289)T2.CB, (T0289)E46.CB) [> 3.3062 = 5.5103 < 7.1634] w=0.0192 to align # Constraint # added constraint: constraint((T0289)F261.CB, (T0289)K290.CB) [> 4.1259 = 6.8765 < 8.9394] w=0.0192 to align # Constraint # added constraint: constraint((T0289)V262.CB, (T0289)C275.CB) [> 3.0828 = 5.1380 < 6.6795] w=0.0192 to align # Constraint # added constraint: constraint((T0289)S263.CB, (T0289)A286.CB) [> 4.2321 = 7.0535 < 9.1695] w=0.0192 to align # Constraint # added constraint: constraint((T0289)L264.CB, (T0289)V277.CB) [> 3.9025 = 6.5042 < 8.4554] w=0.0192 to align # Constraint # added constraint: constraint((T0289)L68.CB, (T0289)R90.CB) [> 3.6596 = 6.0993 < 7.9291] w=0.0192 to align # Constraint # added constraint: constraint((T0289)N76.CB, (T0289)Y87.CB) [> 4.4280 = 7.3801 < 9.5941] w=0.0192 to align # Constraint # added constraint: constraint((T0289)A56.CB, (T0289)L85.CB) [> 4.7797 = 7.9662 < 10.3561] w=0.0192 to align # Constraint # added constraint: constraint((T0289)L127.CB, (T0289)Y172.CB) [> 4.6174 = 7.6956 < 10.0043] w=0.0192 to align # Constraint # added constraint: constraint((T0289)A240.CB, (T0289)S309.CB) [> 3.4497 = 5.7496 < 7.4745] w=0.0192 to align # Constraint # added constraint: constraint((T0289)I242.CB, (T0289)K290.CB) [> 4.2392 = 7.0654 < 9.1850] w=0.0192 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)V238.CB) [> 2.7314 = 4.5523 < 5.9180] w=0.0192 to align # Constraint # added constraint: constraint((T0289)I219.CB, (T0289)L264.CB) [> 4.4908 = 7.4847 < 9.7301] w=0.0192 to align # Constraint # added constraint: constraint((T0289)V238.CB, (T0289)V277.CB) [> 2.9552 = 4.9253 < 6.4029] w=0.0192 to align # Constraint # added constraint: constraint((T0289)V238.CB, (T0289)P279.CB) [> 3.3680 = 5.6133 < 7.2973] w=0.0192 to align # Constraint # added constraint: constraint((T0289)V238.CB, (T0289)I307.CB) [> 3.9804 = 6.6340 < 8.6242] w=0.0192 to align # Constraint # added constraint: constraint((T0289)V238.CB, (T0289)R308.CB) [> 3.2961 = 5.4935 < 7.1416] w=0.0192 to align # Constraint # added constraint: constraint((T0289)V238.CB, (T0289)S309.CB) [> 4.7227 = 7.8712 < 10.2325] w=0.0192 to align # Constraint # added constraint: constraint((T0289)A239.CB, (T0289)I307.CB) [> 3.3312 = 5.5520 < 7.2176] w=0.0192 to align # Constraint # added constraint: constraint((T0289)A239.CB, (T0289)S309.CB) [> 3.6674 = 6.1124 < 7.9461] w=0.0192 to align # Constraint # added constraint: constraint((T0289)S235.CB, (T0289)D265.CB) [> 2.1295 = 3.5492 < 4.6139] w=0.0192 to align # Constraint # added constraint: constraint((T0289)S235.CB, (T0289)G266.CA) [> 4.5192 = 7.5320 < 9.7916] w=0.0192 to align # Constraint # added constraint: constraint((T0289)S235.CB, (T0289)V282.CB) [> 4.1885 = 6.9809 < 9.0752] w=0.0192 to align # Constraint # added constraint: constraint((T0289)V238.CB, (T0289)F261.CB) [> 4.5301 = 7.5501 < 9.8152] w=0.0192 to align # Constraint # added constraint: constraint((T0289)V238.CB, (T0289)F281.CB) [> 3.9330 = 6.5550 < 8.5216] w=0.0192 to align # Constraint # added constraint: constraint((T0289)V238.CB, (T0289)E292.CB) [> 4.0303 = 6.7171 < 8.7322] w=0.0192 to align # Constraint # added constraint: constraint((T0289)A239.CB, (T0289)S263.CB) [> 3.9934 = 6.6557 < 8.6524] w=0.0192 to align # Constraint # added constraint: constraint((T0289)A240.CB, (T0289)S263.CB) [> 3.4943 = 5.8238 < 7.5709] w=0.0192 to align # Constraint # added constraint: constraint((T0289)A240.CB, (T0289)L264.CB) [> 4.3575 = 7.2625 < 9.4413] w=0.0192 to align # Constraint # added constraint: constraint((T0289)Y230.CB, (T0289)S263.CB) [> 4.5319 = 7.5532 < 9.8192] w=0.0192 to align # Constraint # added constraint: constraint((T0289)P231.CB, (T0289)S263.CB) [> 3.3044 = 5.5073 < 7.1595] w=0.0192 to align # Constraint # added constraint: constraint((T0289)L271.CB, (T0289)A295.CB) [> 4.4434 = 7.4057 < 9.6275] w=0.0192 to align # Constraint # added constraint: constraint((T0289)G272.CA, (T0289)A295.CB) [> 4.7944 = 7.9907 < 10.3880] w=0.0192 to align # Constraint # added constraint: constraint((T0289)D274.CB, (T0289)T297.CB) [> 3.4121 = 5.6868 < 7.3928] w=0.0192 to align # Constraint # added constraint: constraint((T0289)T276.CB, (T0289)A295.CB) [> 2.8641 = 4.7734 < 6.2055] w=0.0192 to align # Constraint # added constraint: constraint((T0289)L300.CB, (T0289)S309.CB) [> 3.7345 = 6.2241 < 8.0913] w=0.0192 to align # Constraint # added constraint: constraint((T0289)V241.CB, (T0289)P259.CB) [> 4.0362 = 6.7270 < 8.7451] w=0.0192 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)F214.CB) [> 3.6913 = 6.1522 < 7.9979] w=0.0192 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)C217.CB) [> 4.3756 = 7.2927 < 9.4804] w=0.0192 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)Q247.CB) [> 3.9426 = 6.5711 < 8.5424] w=0.0192 to align # Constraint # added constraint: constraint((T0289)M121.CB, (T0289)Y278.CB) [> 4.5147 = 7.5245 < 9.7819] w=0.0192 to align # Constraint # added constraint: constraint((T0289)Y154.CB, (T0289)I307.CB) [> 4.6297 = 7.7162 < 10.0310] w=0.0192 to align # Constraint # added constraint: constraint((T0289)Y154.CB, (T0289)S309.CB) [> 4.1037 = 6.8395 < 8.8913] w=0.0192 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)V277.CB) [> 4.7590 = 7.9317 < 10.3112] w=0.0192 to align # Constraint # added constraint: constraint((T0289)M225.CB, (T0289)P270.CB) [> 3.9892 = 6.6487 < 8.6433] w=0.0192 to align # Constraint # added constraint: constraint((T0289)V153.CB, (T0289)Y278.CB) [> 4.4058 = 7.3431 < 9.5460] w=0.0192 to align # Constraint # added constraint: constraint((T0289)V153.CB, (T0289)V277.CB) [> 3.9935 = 6.6558 < 8.6526] w=0.0192 to align # Constraint # added constraint: constraint((T0289)A218.CB, (T0289)S306.CB) [> 4.0073 = 6.6789 < 8.6825] w=0.0191 to align # Constraint # added constraint: constraint((T0289)Y222.CB, (T0289)S309.CB) [> 3.3188 = 5.5313 < 7.1907] w=0.0191 to align # Constraint # added constraint: constraint((T0289)V221.CB, (T0289)R308.CB) [> 4.5689 = 7.6149 < 9.8993] w=0.0191 to align # Constraint # added constraint: constraint((T0289)V221.CB, (T0289)V277.CB) [> 4.2007 = 7.0012 < 9.1016] w=0.0191 to align # Constraint # added constraint: constraint((T0289)A240.CB, (T0289)Y288.CB) [> 3.7076 = 6.1794 < 8.0332] w=0.0191 to align # Constraint # added constraint: constraint((T0289)A240.CB, (T0289)V277.CB) [> 3.2687 = 5.4478 < 7.0821] w=0.0191 to align # Constraint # added constraint: constraint((T0289)A240.CB, (T0289)G266.CA) [> 3.7208 = 6.2013 < 8.0617] w=0.0191 to align # Constraint # added constraint: constraint((T0289)V238.CB, (T0289)K290.CB) [> 2.6719 = 4.4531 < 5.7890] w=0.0191 to align # Constraint # added constraint: constraint((T0289)V238.CB, (T0289)Y288.CB) [> 3.5039 = 5.8398 < 7.5918] w=0.0191 to align # Constraint # added constraint: constraint((T0289)S235.CB, (T0289)P270.CB) [> 4.3121 = 7.1868 < 9.3428] w=0.0191 to align # Constraint # added constraint: constraint((T0289)I15.CB, (T0289)A201.CB) [> 4.4515 = 7.4192 < 9.6449] w=0.0191 to align # Constraint # added constraint: constraint((T0289)P49.CB, (T0289)C151.CB) [> 3.5143 = 5.8572 < 7.6143] w=0.0190 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)G175.CA) [> 4.6715 = 7.7859 < 10.1217] w=0.0189 to align # Constraint # added constraint: constraint((T0289)M138.CB, (T0289)Y154.CB) [> 4.4985 = 7.4975 < 9.7467] w=0.0189 to align # Constraint # added constraint: constraint((T0289)G18.CA, (T0289)L77.CB) [> 4.6231 = 7.7051 < 10.0167] w=0.0189 to align # Constraint # added constraint: constraint((T0289)I51.CB, (T0289)I95.CB) [> 3.8324 = 6.3874 < 8.3036] w=0.0189 to align # Constraint # added constraint: constraint((T0289)P259.CB, (T0289)L302.CB) [> 4.5232 = 7.5386 < 9.8002] w=0.0189 to align # Constraint # added constraint: constraint((T0289)L246.CB, (T0289)V280.CB) [> 3.8974 = 6.4957 < 8.4444] w=0.0189 to align # Constraint # added constraint: constraint((T0289)I242.CB, (T0289)S306.CB) [> 4.7341 = 7.8902 < 10.2572] w=0.0189 to align # Constraint # added constraint: constraint((T0289)V268.CB, (T0289)N303.CB) [> 3.4268 = 5.7114 < 7.4248] w=0.0189 to align # Constraint # added constraint: constraint((T0289)K267.CB, (T0289)N303.CB) [> 3.9197 = 6.5328 < 8.4926] w=0.0189 to align # Constraint # added constraint: constraint((T0289)A240.CB, (T0289)Y278.CB) [> 4.6449 = 7.7416 < 10.0640] w=0.0189 to align # Constraint # added constraint: constraint((T0289)Y230.CB, (T0289)T298.CB) [> 4.3116 = 7.1859 < 9.3417] w=0.0189 to align # Constraint # added constraint: constraint((T0289)P231.CB, (T0289)T301.CB) [> 4.2375 = 7.0625 < 9.1813] w=0.0189 to align # Constraint # added constraint: constraint((T0289)G175.CA, (T0289)A201.CB) [> 3.9038 = 6.5063 < 8.4582] w=0.0152 to align # Constraint # added constraint: constraint((T0289)P173.CB, (T0289)A201.CB) [> 3.5973 = 5.9956 < 7.7943] w=0.0152 to align # Constraint # added constraint: constraint((T0289)N53.CB, (T0289)V71.CB) [> 3.2084 = 5.3474 < 6.9516] w=0.0152 to align # Constraint # added constraint: constraint((T0289)I51.CB, (T0289)Y154.CB) [> 4.3960 = 7.3267 < 9.5248] w=0.0152 to align # Constraint # added constraint: constraint((T0289)I51.CB, (T0289)V153.CB) [> 4.4741 = 7.4568 < 9.6938] w=0.0152 to align # Constraint # added constraint: constraint((T0289)F50.CB, (T0289)Y154.CB) [> 2.8057 = 4.6762 < 6.0791] w=0.0152 to align # Constraint # added constraint: constraint((T0289)P49.CB, (T0289)S152.CB) [> 4.1715 = 6.9525 < 9.0383] w=0.0152 to align # Constraint # added constraint: constraint((T0289)K48.CB, (T0289)S152.CB) [> 3.5599 = 5.9332 < 7.7132] w=0.0152 to align # Constraint # added constraint: constraint((T0289)K48.CB, (T0289)C151.CB) [> 4.4998 = 7.4997 < 9.7497] w=0.0152 to align # Constraint # added constraint: constraint((T0289)P49.CB, (T0289)V153.CB) [> 3.1250 = 5.2084 < 6.7709] w=0.0114 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)V153.CB) [> 2.7184 = 4.5307 < 5.8899] w=0.0114 to align # Constraint # added constraint: constraint((T0289)V110.CB, (T0289)G122.CA) [> 3.1909 = 5.3182 < 6.9137] w=0.0076 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)G122.CA) [> 2.9548 = 4.9247 < 6.4021] w=0.0076 to align # Constraint # added constraint: constraint((T0289)Y87.CB, (T0289)P259.CB) [> 4.3452 = 7.2420 < 9.4146] w=0.0076 to align # Constraint # added constraint: constraint((T0289)Y87.CB, (T0289)F261.CB) [> 4.3362 = 7.2270 < 9.3951] w=0.0076 to align # Constraint # added constraint: constraint((T0289)Y87.CB, (T0289)P270.CB) [> 4.5805 = 7.6341 < 9.9244] w=0.0076 to align # Constraint # added constraint: constraint((T0289)T25.CB, (T0289)P279.CB) [> 3.4223 = 5.7038 < 7.4149] w=0.0076 to align # Constraint # added constraint: constraint((T0289)T25.CB, (T0289)V282.CB) [> 3.5454 = 5.9090 < 7.6818] w=0.0076 to align # Constraint # added constraint: constraint((T0289)I51.CB, (T0289)C151.CB) [> 4.5181 = 7.5302 < 9.7893] w=0.0076 to align # Constraint # added constraint: constraint((T0289)I51.CB, (T0289)I156.CB) [> 4.1690 = 6.9484 < 9.0329] w=0.0076 to align # Constraint # added constraint: constraint((T0289)T52.CB, (T0289)V153.CB) [> 4.1340 = 6.8900 < 8.9570] w=0.0076 to align # Constraint # added constraint: constraint((T0289)T52.CB, (T0289)Y154.CB) [> 4.1146 = 6.8576 < 8.9150] w=0.0076 to align # Constraint # added constraint: constraint((T0289)K48.CB, (T0289)V153.CB) [> 4.7099 = 7.8499 < 10.2048] w=0.0076 to align # Constraint # added constraint: constraint((T0289)K48.CB, (T0289)Y154.CB) [> 4.0221 = 6.7034 < 8.7145] w=0.0076 to align # Constraint # added constraint: constraint((T0289)P49.CB, (T0289)Y154.CB) [> 4.2015 = 7.0025 < 9.1032] w=0.0076 to align # Constraint # added constraint: constraint((T0289)F50.CB, (T0289)C151.CB) [> 4.7931 = 7.9886 < 10.3851] w=0.0076 to align # Constraint # added constraint: constraint((T0289)F50.CB, (T0289)S152.CB) [> 3.1647 = 5.2745 < 6.8569] w=0.0076 to align # Constraint # added constraint: constraint((T0289)F50.CB, (T0289)V153.CB) [> 4.7703 = 7.9505 < 10.3356] w=0.0076 to align # Constraint # added constraint: constraint((T0289)F208.CB, (T0289)C217.CB) [> 3.7198 = 6.1997 < 8.0596] w=0.0076 to align # Constraint # added constraint: constraint((T0289)F208.CB, (T0289)I219.CB) [> 3.7241 = 6.2068 < 8.0689] w=0.0076 to align # Constraint # added constraint: constraint((T0289)L186.CB, (T0289)Y222.CB) [> 2.7909 = 4.6515 < 6.0469] w=0.0076 to align # Constraint # added constraint: constraint((T0289)F261.CB, (T0289)V277.CB) [> 4.7879 = 7.9799 < 10.3738] w=0.0076 to align # Constraint # added constraint: constraint((T0289)F261.CB, (T0289)Y278.CB) [> 3.6870 = 6.1450 < 7.9886] w=0.0076 to align # Constraint # added constraint: constraint((T0289)V153.CB, (T0289)S168.CB) [> 3.5785 = 5.9642 < 7.7534] w=0.0076 to align # Constraint # added constraint: constraint((T0289)Y154.CB, (T0289)A201.CB) [> 4.6631 = 7.7719 < 10.1035] w=0.0076 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)C123.CB) [> 4.5722 = 7.6203 < 9.9064] w=0.0076 to align # Constraint # added constraint: constraint((T0289)V174.CB, (T0289)F208.CB) [> 3.5308 = 5.8847 < 7.6501] w=0.0076 to align # Constraint # added constraint: constraint((T0289)G175.CA, (T0289)F208.CB) [> 4.3321 = 7.2201 < 9.3862] w=0.0076 to align # Constraint # added constraint: constraint((T0289)I176.CB, (T0289)F208.CB) [> 3.9917 = 6.6529 < 8.6488] w=0.0076 to align # Constraint # added constraint: constraint((T0289)A164.CB, (T0289)I176.CB) [> 4.6301 = 7.7168 < 10.0318] w=0.0076 to align # Constraint # added constraint: constraint((T0289)K48.CB, (T0289)V110.CB) [> 3.5088 = 5.8480 < 7.6024] w=0.0038 to align # Constraint # added constraint: constraint((T0289)K48.CB, (T0289)V111.CB) [> 3.8610 = 6.4349 < 8.3654] w=0.0038 to align # Constraint # added constraint: constraint((T0289)P49.CB, (T0289)V111.CB) [> 2.2928 = 3.8214 < 4.9678] w=0.0038 to align # Constraint # added constraint: constraint((T0289)P49.CB, (T0289)D113.CB) [> 4.2579 = 7.0964 < 9.2254] w=0.0038 to align # Constraint # added constraint: constraint((T0289)F50.CB, (T0289)V110.CB) [> 4.2517 = 7.0862 < 9.2120] w=0.0038 to align # Constraint # added constraint: constraint((T0289)F50.CB, (T0289)V111.CB) [> 4.2673 = 7.1122 < 9.2459] w=0.0038 to align # Constraint # added constraint: constraint((T0289)F50.CB, (T0289)D113.CB) [> 4.0753 = 6.7922 < 8.8299] w=0.0038 to align # Constraint # added constraint: constraint((T0289)V110.CB, (T0289)C151.CB) [> 4.3914 = 7.3190 < 9.5147] w=0.0038 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)C151.CB) [> 2.2207 = 3.7011 < 4.8115] w=0.0038 to align # Constraint # added constraint: constraint((T0289)V111.CB, (T0289)S152.CB) [> 4.0490 = 6.7483 < 8.7728] w=0.0038 to align # Constraint # added constraint: constraint((T0289)E46.CB, (T0289)Y108.CB) [> 3.5035 = 5.8391 < 7.5908] w=0.0038 to align # Constraint # added constraint: constraint((T0289)V153.CB, (T0289)G175.CA) [> 4.1444 = 6.9073 < 8.9795] w=0.0038 to align # Constraint # added constraint: constraint((T0289)V153.CB, (T0289)I176.CB) [> 3.2181 = 5.3635 < 6.9726] w=0.0038 to align # Constraint # added constraint: constraint((T0289)V153.CB, (T0289)E177.CB) [> 4.6234 = 7.7057 < 10.0174] w=0.0038 to align # Constraint # added constraint: constraint((T0289)V153.CB, (T0289)V178.CB) [> 4.1407 = 6.9011 < 8.9715] w=0.0038 to align # Constraint # added constraint: constraint((T0289)Y154.CB, (T0289)I176.CB) [> 4.2200 = 7.0332 < 9.1432] w=0.0038 to align # Constraint # added constraint: constraint((T0289)Y154.CB, (T0289)E177.CB) [> 2.7217 = 4.5362 < 5.8971] w=0.0038 to align # Constraint # added constraint: constraint((T0289)Y154.CB, (T0289)V178.CB) [> 4.0467 = 6.7445 < 8.7678] w=0.0038 to align # Constraint # added constraint: constraint((T0289)D113.CB, (T0289)S152.CB) [> 4.7933 = 7.9889 < 10.3855] w=0.0038 to align # Constraint # added constraint: constraint((T0289)D113.CB, (T0289)V153.CB) [> 3.0818 = 5.1364 < 6.6773] w=0.0038 to align # Constraint # added constraint: constraint((T0289)L114.CB, (T0289)S152.CB) [> 3.1275 = 5.2124 < 6.7762] w=0.0038 to align # Constraint # added constraint: constraint((T0289)L114.CB, (T0289)V153.CB) [> 4.1311 = 6.8852 < 8.9508] w=0.0038 to align # Constraint # added constraint: constraint((T0289)L114.CB, (T0289)Y154.CB) [> 3.3926 = 5.6543 < 7.3506] w=0.0038 to align # Constraint # added constraint: constraint((T0289)S152.CB, (T0289)I176.CB) [> 4.5311 = 7.5518 < 9.8174] w=0.0038 to align # Constraint # added constraint: constraint((T0289)S152.CB, (T0289)G175.CA) [> 2.8192 = 4.6986 < 6.1082] w=0.0038 to align # Constraint # added constraint: constraint((T0289)S152.CB, (T0289)P173.CB) [> 3.6700 = 6.1167 < 7.9518] w=0.0038 to align # Constraint # added constraint: constraint((T0289)C151.CB, (T0289)I176.CB) [> 4.4511 = 7.4186 < 9.6442] w=0.0038 to align # Constraint # added constraint: constraint((T0289)C151.CB, (T0289)G175.CA) [> 3.3734 = 5.6223 < 7.3090] w=0.0038 to align # Constraint # added constraint: constraint((T0289)C151.CB, (T0289)P173.CB) [> 3.2770 = 5.4617 < 7.1002] w=0.0038 to align # Constraint # added constraint: constraint((T0289)L114.CB, (T0289)A201.CB) [> 4.4960 = 7.4933 < 9.7413] w=0.0019 to align # Constraint # added constraint: constraint((T0289)P54.CB, (T0289)L77.CB) [> 3.8834 = 6.4723 < 8.4140] w=0.0019 to align # Constraint # added constraint: constraint((T0289)P54.CB, (T0289)L74.CB) [> 3.9301 = 6.5501 < 8.5152] w=0.0019 to align # Constraint # added constraint: constraint((T0289)P54.CB, (T0289)D73.CB) [> 3.7269 = 6.2115 < 8.0750] w=0.0019 to align # Constraint # added constraint: constraint((T0289)I51.CB, (T0289)L114.CB) [> 3.7086 = 6.1810 < 8.0354] w=0.0019 to align # Constraint # added constraint: constraint((T0289)I51.CB, (T0289)D113.CB) [> 2.5199 = 4.1998 < 5.4598] w=0.0019 to align # Constraint # added constraint: constraint((T0289)L68.CB, (T0289)I126.CB) [> 3.9511 = 6.5851 < 8.5607] w=0.0019 to align # Constraint # added constraint: constraint((T0289)P54.CB, (T0289)D113.CB) [> 4.5498 = 7.5831 < 9.8580] w=0.0019 to align # Constraint # added constraint: constraint((T0289)S235.CB, (T0289)A304.CB) [> 2.8238 = 4.7063 < 6.1181] w=0.0019 to align # Constraint # added constraint: constraint((T0289)Y154.CB, (T0289)Y172.CB) [> 3.9535 = 6.5891 < 8.5659] w=0.0019 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0289/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0289/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 311 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 311 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 311 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 311 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 311 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 311 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 311 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 311 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 52 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 311 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0289)L300.CB and (T0289)L300.CG only 0.000 apart, marking (T0289)L300.CG as missing WARNING: atoms too close: (T0289)L300.CG and (T0289)L300.CD1 only 0.000 apart, marking (T0289)L300.CD1 as missing WARNING: atoms too close: (T0289)L300.CB and (T0289)L300.CD1 only 0.000 apart, marking (T0289)L300.CD1 as missing WARNING: atoms too close: (T0289)L300.CD1 and (T0289)L300.CD2 only 0.000 apart, marking (T0289)L300.CD2 as missing WARNING: atoms too close: (T0289)L300.CG and (T0289)L300.CD2 only 0.000 apart, marking (T0289)L300.CD2 as missing WARNING: atoms too close: (T0289)L300.CB and (T0289)L300.CD2 only 0.000 apart, marking (T0289)L300.CD2 as missing # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 250 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0289)N209.N and (T0289)N209.CA only 0.000 apart, marking (T0289)N209.CA as missing WARNING: atoms too close: (T0289)N209.CA and (T0289)N209.C only 0.000 apart, marking (T0289)N209.C as missing WARNING: atoms too close: (T0289)N209.N and (T0289)N209.C only 0.000 apart, marking (T0289)N209.C as missing WARNING: atoms too close: (T0289)F208.CA and (T0289)E210.CA only 0.000 apart, marking (T0289)E210.CA as missing WARNING: atoms too close: (T0289)D237.CA and (T0289)H255.CA only 0.000 apart, marking (T0289)H255.CA as missing WARNING: atoms too close: (T0289)H243.CA and (T0289)P256.CA only 0.000 apart, marking (T0289)P256.CA as missing # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 311 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0289)P9.O and (T0289)I10.N only 0.000 apart, marking (T0289)I10.N as missing WARNING: atoms too close: (T0289)C123.O and (T0289)T124.N only 0.000 apart, marking (T0289)T124.N as missing WARNING: atoms too close: (T0289)S152.O and (T0289)V153.N only 0.000 apart, marking (T0289)V153.N as missing # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 303 in servers/nFOLD_TS4.pdb.gz # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 303 in servers/nFOLD_TS5.pdb.gz # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0289 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 1.2073 model score 1.2121 model score 1.1789 model score 1.3704 model score 1.1764 model score 1.2731 model score 1.2733 model score 1.3008 model score 1.3008 model score 1.3008 model score 1.1635 model score 1.2735 model score 0.3514 model score 0.3103 model score 0.4879 model score 0.5914 model score 0.4703 model score 1.8731 model score 1.8389 model score 2.0085 model score 1.9374 model score 1.9542 model score -0.0307 model score 0.1450 model score 0.1450 model score 0.1450 model score 0.1450 model score 0.1450 model score -0.0088 model score 0.1319 model score 0.1534 model score 0.0125 model score 0.0124 model score 1.0105 model score 0.0782 model score 0.1048 model score 0.3180 model score 0.2506 model score 1.2719 model score 1.2705 model score 1.2701 model score 1.2720 model score 1.2719 model score 0.0079 model score 0.2259 model score 0.1812 model score 0.0066 model score 0.0123 model score -0.0120 model score 0.0582 model score 0.0728 model score 0.0543 model score 0.0890 model score 0.0117 model score 1.4925 model score 0.0213 model score 1.2795 model score 0.2256 model score 1.2724 model score 1.2732 model score 1.2725 model score 1.2660 model score 1.2643 model score 1.2724 model score 1.2732 model score 1.2725 model score 1.2660 model score 1.2643 model score 2.6309 model score 0.2806 model score 0.1380 model score 0.9054 model score 1.3172 model score 1.5869 model score 1.2732 model score 1.2724 model score 1.2651 model score 1.2816 model score 1.2785 model score -0.0120 model score 0.0582 model score 0.0728 model score 0.0543 model score 0.0890 model score 0.3567 model score 0.4385 model score 0.4527 model score 0.3513 model score 0.4142 model score 0.0367 model score 0.2908 model score 0.1447 model score 0.1682 model score 0.0667 model score 0.0833 model score 0.0422 model score 0.0316 model score 1.6201 model score 1.0012 model score 1.2661 model score 1.8021 model score 1.5995 model score 0.1141 model score 0.2448 model score 0.2420 model score 1.3985 model score 1.5127 model score 0.0916 model score 0.1495 model score 0.1979 model score 0.2990 model score 0.3689 model score 0.0080 model score 0.0509 model score 0.0571 model score 0.0636 model score -0.0141 model score 1.8416 model score 1.8820 model score 1.8430 model score 1.9132 model score 1.7922 model score 1.3490 model score 1.3302 model score 1.3399 model score 1.3075 model score 1.3239 model score 1.3979 model score 1.3809 model score 1.3876 model score 1.3508 model score 0.0254 model score 0.0166 model score 0.0095 model score 0.0328 model score 0.0420 model score 0.0357 model score 0.2315 model score 0.1618 model score 0.1577 model score 0.1566 model score 0.1570 model score 0.1569 model score 0.1782 model score -0.0405 model score 0.0559 model score -0.0313 model score 0.0065 model score -0.0237 model score 0.0383 model score -0.0318 model score 0.0995 model score 0.1159 model score 0.0571 model score 0.0992 model score 0.1217 model score 0.0736 model score 0.3556 model score -0.0178 model score 0.0001 model score -0.0285 model score 0.0703 model score 0.0490 model score 0.0926 model score 0.1722 model score 0.0889 model score 0.0495 model score 0.0753 model score 0.2060 model score 0.2124 model score 0.1511 model score 1.2709 model score 1.2723 model score 1.2709 model score 1.2709 model score 1.2734 model score 1.2725 model score 1.2701 model score 1.2704 model score 1.2709 model score 1.2705 model score -0.0424 model score -0.0663 model score -0.1013 model score 0.0783 model score -0.0183 model score 0.1736 model score 0.0827 model score 0.2940 model score 0.3236 model score 0.2551 model score 0.1606 model score 0.1716 model score 0.2929 model score 0.3693 model score 0.3036 model score 0.0725 model score 0.0728 model score 0.2156 model score 0.1546 model score 0.3169 model score 1.2718 model score 1.2721 model score 1.2721 model score 1.2726 model score 0.0259 model score 1.2718 model score 1.2721 model score 1.2721 model score 1.2726 model score -0.0644 model score -0.0361 model score -0.0590 model score -0.0483 model score -0.0151 model score 0.0094 model score -0.0898 model score 1.2691 model score 1.2645 model score 1.2647 model score 1.2657 model score 1.2796 model score 1.2724 model score 1.2732 model score 1.2643 model score 1.2657 model score 1.2725 model score 0.1798 model score 0.2059 model score 0.0039 model score 0.3294 model score 0.0712 model score 1.9881 model score 0.4444 model score 0.4761 model score 0.5289 model score 0.4322 model score 1.2747 model score 0.0748 model score 0.1679 model score 0.0178 model score 0.2123 model score 0.1572 model score -0.0240 model score -0.0407 model score -0.0470 model score 0.1355 model score 0.0604 model score -0.0013 model score 0.0055 USE_META, weight: 0.5689 cost: 1.2073 min: -0.1013 max: 2.6309 USE_META, weight: 0.5673 cost: 1.2121 min: -0.1013 max: 2.6309 USE_META, weight: 0.5783 cost: 1.1789 min: -0.1013 max: 2.6309 USE_META, weight: 0.5152 cost: 1.3704 min: -0.1013 max: 2.6309 USE_META, weight: 0.5791 cost: 1.1764 min: -0.1013 max: 2.6309 USE_META, weight: 0.5472 cost: 1.2731 min: -0.1013 max: 2.6309 USE_META, weight: 0.5472 cost: 1.2733 min: -0.1013 max: 2.6309 USE_META, weight: 0.5382 cost: 1.3008 min: -0.1013 max: 2.6309 USE_META, weight: 0.5382 cost: 1.3008 min: -0.1013 max: 2.6309 USE_META, weight: 0.5382 cost: 1.3008 min: -0.1013 max: 2.6309 USE_META, weight: 0.5834 cost: 1.1635 min: -0.1013 max: 2.6309 USE_META, weight: 0.5471 cost: 1.2735 min: -0.1013 max: 2.6309 USE_META, weight: 0.8509 cost: 0.3514 min: -0.1013 max: 2.6309 USE_META, weight: 0.8644 cost: 0.3103 min: -0.1013 max: 2.6309 USE_META, weight: 0.8059 cost: 0.4879 min: -0.1013 max: 2.6309 USE_META, weight: 0.7718 cost: 0.5914 min: -0.1013 max: 2.6309 USE_META, weight: 0.8117 cost: 0.4703 min: -0.1013 max: 2.6309 USE_META, weight: 0.3496 cost: 1.8731 min: -0.1013 max: 2.6309 USE_META, weight: 0.3609 cost: 1.8389 min: -0.1013 max: 2.6309 USE_META, weight: 0.3050 cost: 2.0085 min: -0.1013 max: 2.6309 USE_META, weight: 0.3284 cost: 1.9374 min: -0.1013 max: 2.6309 USE_META, weight: 0.3229 cost: 1.9542 min: -0.1013 max: 2.6309 USE_META, weight: 0.9767 cost: -0.0307 min: -0.1013 max: 2.6309 USE_META, weight: 0.9189 cost: 0.1450 min: -0.1013 max: 2.6309 USE_META, weight: 0.9189 cost: 0.1450 min: -0.1013 max: 2.6309 USE_META, weight: 0.9189 cost: 0.1450 min: -0.1013 max: 2.6309 USE_META, weight: 0.9189 cost: 0.1450 min: -0.1013 max: 2.6309 USE_META, weight: 0.9189 cost: 0.1450 min: -0.1013 max: 2.6309 USE_META, weight: 0.9695 cost: -0.0088 min: -0.1013 max: 2.6309 USE_META, weight: 0.9232 cost: 0.1319 min: -0.1013 max: 2.6309 USE_META, weight: 0.9161 cost: 0.1534 min: -0.1013 max: 2.6309 USE_META, weight: 0.9625 cost: 0.0125 min: -0.1013 max: 2.6309 USE_META, weight: 0.9625 cost: 0.0124 min: -0.1013 max: 2.6309 USE_META, weight: 0.6338 cost: 1.0105 min: -0.1013 max: 2.6309 USE_META, weight: 0.9409 cost: 0.0782 min: -0.1013 max: 2.6309 USE_META, weight: 0.9321 cost: 0.1048 min: -0.1013 max: 2.6309 USE_META, weight: 0.8619 cost: 0.3180 min: -0.1013 max: 2.6309 USE_META, weight: 0.8841 cost: 0.2506 min: -0.1013 max: 2.6309 USE_META, weight: 0.5477 cost: 1.2719 min: -0.1013 max: 2.6309 USE_META, weight: 0.5481 cost: 1.2705 min: -0.1013 max: 2.6309 USE_META, weight: 0.5482 cost: 1.2701 min: -0.1013 max: 2.6309 USE_META, weight: 0.5476 cost: 1.2720 min: -0.1013 max: 2.6309 USE_META, weight: 0.5477 cost: 1.2719 min: -0.1013 max: 2.6309 USE_META, weight: 0.9640 cost: 0.0079 min: -0.1013 max: 2.6309 USE_META, weight: 0.8922 cost: 0.2259 min: -0.1013 max: 2.6309 USE_META, weight: 0.9069 cost: 0.1812 min: -0.1013 max: 2.6309 USE_META, weight: 0.9645 cost: 0.0066 min: -0.1013 max: 2.6309 USE_META, weight: 0.9626 cost: 0.0123 min: -0.1013 max: 2.6309 USE_META, weight: 0.9706 cost: -0.0120 min: -0.1013 max: 2.6309 USE_META, weight: 0.9474 cost: 0.0582 min: -0.1013 max: 2.6309 USE_META, weight: 0.9427 cost: 0.0728 min: 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USE_META, weight: 0.8701 cost: 0.2929 min: -0.1013 max: 2.6309 USE_META, weight: 0.8450 cost: 0.3693 min: -0.1013 max: 2.6309 USE_META, weight: 0.8666 cost: 0.3036 min: -0.1013 max: 2.6309 USE_META, weight: 0.9427 cost: 0.0725 min: -0.1013 max: 2.6309 USE_META, weight: 0.9426 cost: 0.0728 min: -0.1013 max: 2.6309 USE_META, weight: 0.8956 cost: 0.2156 min: -0.1013 max: 2.6309 USE_META, weight: 0.9157 cost: 0.1546 min: -0.1013 max: 2.6309 USE_META, weight: 0.8622 cost: 0.3169 min: -0.1013 max: 2.6309 USE_META, weight: 0.5477 cost: 1.2718 min: -0.1013 max: 2.6309 USE_META, weight: 0.5476 cost: 1.2721 min: -0.1013 max: 2.6309 USE_META, weight: 0.5476 cost: 1.2721 min: -0.1013 max: 2.6309 USE_META, weight: 0.5474 cost: 1.2726 min: -0.1013 max: 2.6309 USE_META, weight: 0.9581 cost: 0.0259 min: -0.1013 max: 2.6309 USE_META, weight: 0.5477 cost: 1.2718 min: -0.1013 max: 2.6309 USE_META, weight: 0.5476 cost: 1.2721 min: -0.1013 max: 2.6309 USE_META, weight: 0.5476 cost: 1.2721 min: -0.1013 max: 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0.0178 min: -0.1013 max: 2.6309 USE_META, weight: 0.8967 cost: 0.2123 min: -0.1013 max: 2.6309 USE_META, weight: 0.9149 cost: 0.1572 min: -0.1013 max: 2.6309 USE_META, weight: 0.9745 cost: -0.0240 min: -0.1013 max: 2.6309 USE_META, weight: 0.9800 cost: -0.0407 min: -0.1013 max: 2.6309 USE_META, weight: 0.9821 cost: -0.0470 min: -0.1013 max: 2.6309 USE_META, weight: 0.9220 cost: 0.1355 min: -0.1013 max: 2.6309 USE_META, weight: 0.9467 cost: 0.0604 min: -0.1013 max: 2.6309 USE_META, weight: 0.9670 cost: -0.0013 min: -0.1013 max: 2.6309 USE_META, weight: 0.9648 cost: 0.0055 min: -0.1013 max: 2.6309 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9963 eval: 0.1328 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9963 eval: 0.1328 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9963 eval: 0.1328 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9942 eval: 0.2114 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9942 eval: 0.2114 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9942 eval: 0.2114 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.3959 eval: 21.9040 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.3959 eval: 21.9040 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.3959 eval: 21.9040 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9957 eval: 0.1563 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9957 eval: 0.1563 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9957 eval: 0.1563 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9962 eval: 0.1380 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9962 eval: 0.1380 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9962 eval: 0.1380 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.1000 eval: 32.6340 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.1000 eval: 32.6340 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.1000 eval: 32.6340 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9838 eval: 0.5873 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9838 eval: 0.5873 min: 0.0000 max: 32.6340 USE_EVALUE, weight: 0.9838 eval: 0.5873 min: 0.0000 max: 32.6340 Number of contacts in models: 250 Number of contacts in alignments: 57 NUMB_ALIGNS: 57 Adding 17392 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -591.7498, CN propb: -591.7498 weights: 0.2067 constraints: 1332 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 1332 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 1332 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 16060 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 16060 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 17392 # command: