# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0285/ # command:# Making conformation for sequence T0285 numbered 1 through 125 Created new target T0285 from T0285.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0285/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285//projects/compbio/experiments/protein-predict/casp7/T0285/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0285//projects/compbio/experiments/protein-predict/casp7/T0285/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0285/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0285/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0285)I90.CB, (T0285)V101.CB) [> 3.8620 = 6.4366 < 8.3676] w=1.0000 to align # Constraint # added constraint: constraint((T0285)I90.CB, (T0285)V100.CB) [> 3.4734 = 5.7891 < 7.5258] w=1.0000 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)R56.CB) [> 3.7128 = 6.1880 < 8.0444] w=0.8999 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)V101.CB) [> 4.1720 = 6.9534 < 9.0394] w=0.8643 to align # Constraint # added constraint: constraint((T0285)S104.CB, (T0285)R113.CB) [> 3.9385 = 6.5642 < 8.5334] w=0.7475 to align # Constraint # added constraint: constraint((T0285)R41.CB, (T0285)V101.CB) [> 3.1813 = 5.3022 < 6.8928] w=0.7228 to align # Constraint # added constraint: constraint((T0285)R41.CB, (T0285)V100.CB) [> 4.4445 = 7.4075 < 9.6297] w=0.7228 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)T102.CB) [> 3.3122 = 5.5203 < 7.1764] w=0.7228 to align # Constraint # added constraint: constraint((T0285)S39.CB, (T0285)T102.CB) [> 4.3416 = 7.2360 < 9.4068] w=0.7228 to align # Constraint # added constraint: constraint((T0285)I90.CB, (T0285)T102.CB) [> 3.9337 = 6.5562 < 8.5230] w=0.6885 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)L58.CB) [> 3.3484 = 5.5807 < 7.2550] w=0.6670 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)F120.CB) [> 4.4430 = 7.4051 < 9.6266] w=0.6515 to align # Constraint # added constraint: constraint((T0285)A66.CB, (T0285)I116.CB) [> 3.1247 = 5.2079 < 6.7702] w=0.6515 to align # Constraint # added constraint: constraint((T0285)A66.CB, (T0285)F120.CB) [> 3.0718 = 5.1196 < 6.6555] w=0.6515 to align # Constraint # added constraint: constraint((T0285)D47.CB, (T0285)V98.CB) [> 3.6772 = 6.1286 < 7.9672] w=0.6437 to align # Constraint # added constraint: constraint((T0285)S39.CB, (T0285)I103.CB) [> 2.8808 = 4.8014 < 6.2418] w=0.6437 to align # Constraint # added constraint: constraint((T0285)W38.CB, (T0285)I103.CB) [> 4.3082 = 7.1803 < 9.3344] w=0.6437 to align # Constraint # added constraint: constraint((T0285)I62.CB, (T0285)L92.CB) [> 4.0607 = 6.7678 < 8.7981] w=0.6182 to align # Constraint # added constraint: constraint((T0285)L92.CB, (T0285)V101.CB) [> 4.0698 = 6.7831 < 8.8180] w=0.5859 to align # Constraint # added constraint: constraint((T0285)S104.CB, (T0285)D114.CB) [> 3.4317 = 5.7196 < 7.4354] w=0.5724 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)R88.CB) [> 3.2719 = 5.4532 < 7.0891] w=0.5328 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)I90.CB) [> 3.7803 = 6.3005 < 8.1906] w=0.5328 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)V100.CB) [> 4.7606 = 7.9344 < 10.3147] w=0.5328 to align # Constraint # added constraint: constraint((T0285)L65.CB, (T0285)L85.CB) [> 3.3331 = 5.5552 < 7.2218] w=0.5328 to align # Constraint # added constraint: constraint((T0285)L65.CB, (T0285)R88.CB) [> 4.6822 = 7.8036 < 10.1447] w=0.5328 to align # Constraint # added constraint: constraint((T0285)R88.CB, (T0285)I116.CB) [> 3.9879 = 6.6465 < 8.6404] w=0.5328 to align # Constraint # added constraint: constraint((T0285)R88.CB, (T0285)W117.CB) [> 3.1601 = 5.2669 < 6.8469] w=0.5328 to align # Constraint # added constraint: constraint((T0285)T91.CB, (T0285)V101.CB) [> 4.0328 = 6.7214 < 8.7378] w=0.5328 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)V100.CB) [> 3.8270 = 6.3782 < 8.2917] w=0.5118 to align # Constraint # added constraint: constraint((T0285)G61.CA, (T0285)T91.CB) [> 4.3284 = 7.2140 < 9.3781] w=0.4994 to align # Constraint # added constraint: constraint((T0285)I62.CB, (T0285)V100.CB) [> 4.6124 = 7.6873 < 9.9935] w=0.4967 to align # Constraint # added constraint: constraint((T0285)I62.CB, (T0285)I90.CB) [> 3.8534 = 6.4224 < 8.3491] w=0.4739 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)W117.CB) [> 3.5815 = 5.9691 < 7.7599] w=0.4739 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)L121.CB) [> 3.8671 = 6.4452 < 8.3787] w=0.4739 to align # Constraint # added constraint: constraint((T0285)A66.CB, (T0285)W117.CB) [> 2.6240 = 4.3734 < 5.6854] w=0.4739 to align # Constraint # added constraint: constraint((T0285)P67.CB, (T0285)F120.CB) [> 3.7639 = 6.2731 < 8.1551] w=0.4739 to align # Constraint # added constraint: constraint((T0285)R68.CB, (T0285)I116.CB) [> 4.0924 = 6.8207 < 8.8669] w=0.4739 to align # Constraint # added constraint: constraint((T0285)T102.CB, (T0285)E118.CB) [> 3.3270 = 5.5450 < 7.2084] w=0.4739 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)L58.CB) [> 4.3119 = 7.1866 < 9.3425] w=0.4672 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)P57.CB) [> 3.7264 = 6.2106 < 8.0737] w=0.4672 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)R56.CB) [> 4.1229 = 6.8716 < 8.9330] w=0.4672 to align # Constraint # added constraint: constraint((T0285)A34.CB, (T0285)V43.CB) [> 3.3265 = 5.5441 < 7.2074] w=0.4672 to align # Constraint # added constraint: constraint((T0285)R33.CB, (T0285)V100.CB) [> 4.2561 = 7.0935 < 9.2215] w=0.4672 to align # Constraint # added constraint: constraint((T0285)L32.CB, (T0285)K99.CB) [> 4.4986 = 7.4977 < 9.7470] w=0.4672 to align # Constraint # added constraint: constraint((T0285)L32.CB, (T0285)H89.CB) [> 3.5429 = 5.9048 < 7.6762] w=0.4672 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)P57.CB) [> 4.7199 = 7.8665 < 10.2265] w=0.4672 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)I62.CB) [> 4.3099 = 7.1832 < 9.3382] w=0.4672 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)L54.CB) [> 4.5238 = 7.5396 < 9.8015] w=0.4672 to align # Constraint # added constraint: constraint((T0285)R68.CB, (T0285)L92.CB) [> 4.7998 = 7.9997 < 10.3997] w=0.4672 to align # Constraint # added constraint: constraint((T0285)H89.CB, (T0285)V100.CB) [> 3.3926 = 5.6544 < 7.3507] w=0.4672 to align # Constraint # added constraint: constraint((T0285)H89.CB, (T0285)V101.CB) [> 4.6421 = 7.7369 < 10.0579] w=0.4672 to align # Constraint # added constraint: constraint((T0285)L69.CB, (T0285)T102.CB) [> 4.4012 = 7.3353 < 9.5359] w=0.4447 to align # Constraint # added constraint: constraint((T0285)L85.CB, (T0285)I103.CB) [> 4.0420 = 6.7367 < 8.7577] w=0.4447 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)V100.CB) [> 3.5077 = 5.8461 < 7.6000] w=0.4344 to align # Constraint # added constraint: constraint((T0285)A34.CB, (T0285)G61.CA) [> 4.6026 = 7.6710 < 9.9723] w=0.4327 to align # Constraint # added constraint: constraint((T0285)M35.CB, (T0285)L58.CB) [> 3.0273 = 5.0455 < 6.5591] w=0.4327 to align # Constraint # added constraint: constraint((T0285)M35.CB, (T0285)G61.CA) [> 4.5875 = 7.6459 < 9.9396] w=0.4327 to align # Constraint # added constraint: constraint((T0285)R41.CB, (T0285)L53.CB) [> 3.3060 = 5.5100 < 7.1630] w=0.4327 to align # Constraint # added constraint: constraint((T0285)R41.CB, (T0285)L54.CB) [> 4.2335 = 7.0558 < 9.1725] w=0.4327 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)L85.CB) [> 3.5144 = 5.8574 < 7.6146] w=0.4218 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)V78.CB) [> 3.7087 = 6.1811 < 8.0354] w=0.4072 to align # Constraint # added constraint: constraint((T0285)L65.CB, (T0285)V78.CB) [> 3.6807 = 6.1344 < 7.9748] w=0.4072 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)V100.CB) [> 4.7389 = 7.8982 < 10.2677] w=0.3906 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)S97.CB) [> 3.5203 = 5.8672 < 7.6273] w=0.3552 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)N96.CB) [> 3.9506 = 6.5843 < 8.5596] w=0.3552 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)V100.CB) [> 4.4337 = 7.3896 < 9.6064] w=0.3552 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)K99.CB) [> 4.1368 = 6.8947 < 8.9631] w=0.3552 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)V98.CB) [> 2.7073 = 4.5122 < 5.8659] w=0.3552 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)S97.CB) [> 3.6221 = 6.0367 < 7.8478] w=0.3552 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)V98.CB) [> 4.4744 = 7.4574 < 9.6946] w=0.3552 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)S97.CB) [> 3.0629 = 5.1048 < 6.6362] w=0.3552 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)L124.CB) [> 3.8111 = 6.3519 < 8.2575] w=0.3552 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)L121.CB) [> 4.0169 = 6.6948 < 8.7033] w=0.3552 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)T102.CB) [> 4.3761 = 7.2935 < 9.4816] w=0.3552 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)K99.CB) [> 3.9986 = 6.6644 < 8.6637] w=0.3552 to align # Constraint # added constraint: constraint((T0285)R41.CB, (T0285)K99.CB) [> 3.9027 = 6.5045 < 8.4558] w=0.3552 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)L121.CB) [> 4.2290 = 7.0483 < 9.1627] w=0.3552 to align # Constraint # added constraint: constraint((T0285)S39.CB, (T0285)V101.CB) [> 3.9328 = 6.5547 < 8.5212] w=0.3552 to align # Constraint # added constraint: constraint((T0285)S104.CB, (T0285)I115.CB) [> 4.2558 = 7.0930 < 9.2210] w=0.3552 to align # Constraint # added constraint: constraint((T0285)I90.CB, (T0285)L121.CB) [> 4.6676 = 7.7793 < 10.1131] w=0.3552 to align # Constraint # added constraint: constraint((T0285)L65.CB, (T0285)Y75.CB) [> 4.4138 = 7.3564 < 9.5633] w=0.3552 to align # Constraint # added constraint: constraint((T0285)M63.CB, (T0285)I90.CB) [> 4.5712 = 7.6187 < 9.9043] w=0.3552 to align # Constraint # added constraint: constraint((T0285)M63.CB, (T0285)R88.CB) [> 3.9713 = 6.6189 < 8.6046] w=0.3552 to align # Constraint # added constraint: constraint((T0285)D47.CB, (T0285)S97.CB) [> 3.8637 = 6.4394 < 8.3713] w=0.3552 to align # Constraint # added constraint: constraint((T0285)A66.CB, (T0285)V78.CB) [> 3.4988 = 5.8314 < 7.5808] w=0.3551 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)V64.CB) [> 3.9943 = 6.6571 < 8.6543] w=0.3417 to align # Constraint # added constraint: constraint((T0285)R48.CB, (T0285)A71.CB) [> 3.3759 = 5.6265 < 7.3145] w=0.3115 to align # Constraint # added constraint: constraint((T0285)R48.CB, (T0285)T70.CB) [> 4.5641 = 7.6068 < 9.8888] w=0.3115 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)A71.CB) [> 2.8552 = 4.7586 < 6.1862] w=0.3115 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)T70.CB) [> 4.0696 = 6.7826 < 8.8174] w=0.3115 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)L69.CB) [> 3.2961 = 5.4935 < 7.1416] w=0.3115 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)L69.CB) [> 4.1188 = 6.8646 < 8.9240] w=0.3115 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)L69.CB) [> 3.9436 = 6.5726 < 8.5444] w=0.3115 to align # Constraint # added constraint: constraint((T0285)L32.CB, (T0285)V98.CB) [> 2.2424 = 3.7373 < 4.8585] w=0.3115 to align # Constraint # added constraint: constraint((T0285)D31.CB, (T0285)V98.CB) [> 4.0127 = 6.6878 < 8.6941] w=0.3115 to align # Constraint # added constraint: constraint((T0285)L28.CB, (T0285)V98.CB) [> 3.4553 = 5.7588 < 7.4864] w=0.3115 to align # Constraint # added constraint: constraint((T0285)G87.CA, (T0285)V101.CB) [> 3.8899 = 6.4832 < 8.4282] w=0.3115 to align # Constraint # added constraint: constraint((T0285)L85.CB, (T0285)A105.CB) [> 4.7663 = 7.9439 < 10.3271] w=0.3115 to align # Constraint # added constraint: constraint((T0285)L85.CB, (T0285)T102.CB) [> 3.3676 = 5.6127 < 7.2966] w=0.3115 to align # Constraint # added constraint: constraint((T0285)L54.CB, (T0285)A71.CB) [> 4.6378 = 7.7298 < 10.0487] w=0.3115 to align # Constraint # added constraint: constraint((T0285)D47.CB, (T0285)V101.CB) [> 4.7265 = 7.8776 < 10.2408] w=0.2885 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)K99.CB) [> 4.2994 = 7.1658 < 9.3155] w=0.2885 to align # Constraint # added constraint: constraint((T0285)R41.CB, (T0285)I103.CB) [> 3.6179 = 6.0298 < 7.8388] w=0.2885 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)I103.CB) [> 4.2088 = 7.0146 < 9.1190] w=0.2885 to align # Constraint # added constraint: constraint((T0285)W38.CB, (T0285)A105.CB) [> 3.4956 = 5.8260 < 7.5738] w=0.2885 to align # Constraint # added constraint: constraint((T0285)W38.CB, (T0285)T102.CB) [> 4.1038 = 6.8396 < 8.8915] w=0.2885 to align # Constraint # added constraint: constraint((T0285)P36.CB, (T0285)A105.CB) [> 4.1201 = 6.8669 < 8.9269] w=0.2885 to align # Constraint # added constraint: constraint((T0285)L69.CB, (T0285)T91.CB) [> 4.6875 = 7.8124 < 10.1562] w=0.2885 to align # Constraint # added constraint: constraint((T0285)P67.CB, (T0285)V78.CB) [> 3.6002 = 6.0004 < 7.8005] w=0.2885 to align # Constraint # added constraint: constraint((T0285)A66.CB, (T0285)R81.CB) [> 3.4948 = 5.8247 < 7.5721] w=0.2885 to align # Constraint # added constraint: constraint((T0285)M63.CB, (T0285)K77.CB) [> 4.1218 = 6.8697 < 8.9306] w=0.2885 to align # Constraint # added constraint: constraint((T0285)I62.CB, (T0285)K77.CB) [> 3.9483 = 6.5805 < 8.5547] w=0.2885 to align # Constraint # added constraint: constraint((T0285)L54.CB, (T0285)N93.CB) [> 3.8300 = 6.3833 < 8.2982] w=0.2885 to align # Constraint # added constraint: constraint((T0285)I103.CB, (T0285)W117.CB) [> 3.8779 = 6.4632 < 8.4021] w=0.2736 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)I62.CB) [> 3.7594 = 6.2656 < 8.1453] w=0.2531 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)P60.CB) [> 4.7777 = 7.9629 < 10.3518] w=0.1998 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)P60.CB) [> 3.7040 = 6.1734 < 8.0254] w=0.1998 to align # Constraint # added constraint: constraint((T0285)M63.CB, (T0285)Y86.CB) [> 2.9680 = 4.9467 < 6.4307] w=0.1998 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)M119.CB) [> 4.6949 = 7.8249 < 10.1723] w=0.1776 to align # Constraint # added constraint: constraint((T0285)L65.CB, (T0285)Y86.CB) [> 3.6420 = 6.0700 < 7.8910] w=0.1776 to align # Constraint # added constraint: constraint((T0285)L65.CB, (T0285)G87.CA) [> 3.5528 = 5.9213 < 7.6977] w=0.1776 to align # Constraint # added constraint: constraint((T0285)A66.CB, (T0285)I115.CB) [> 3.3194 = 5.5324 < 7.1921] w=0.1776 to align # Constraint # added constraint: constraint((T0285)P67.CB, (T0285)M119.CB) [> 3.5685 = 5.9475 < 7.7317] w=0.1776 to align # Constraint # added constraint: constraint((T0285)T102.CB, (T0285)F120.CB) [> 2.8170 = 4.6951 < 6.1036] w=0.1776 to align # Constraint # added constraint: constraint((T0285)T102.CB, (T0285)W117.CB) [> 3.1433 = 5.2389 < 6.8105] w=0.1776 to align # Constraint # added constraint: constraint((T0285)R88.CB, (T0285)I115.CB) [> 4.7909 = 7.9848 < 10.3802] w=0.1776 to align # Constraint # added constraint: constraint((T0285)Y86.CB, (T0285)I116.CB) [> 4.2059 = 7.0098 < 9.1127] w=0.1776 to align # Constraint # added constraint: constraint((T0285)Y86.CB, (T0285)I115.CB) [> 3.5454 = 5.9089 < 7.6816] w=0.1776 to align # Constraint # added constraint: constraint((T0285)R68.CB, (T0285)I115.CB) [> 4.1761 = 6.9602 < 9.0482] w=0.1776 to align # Constraint # added constraint: constraint((T0285)L28.CB, (T0285)V100.CB) [> 3.4553 = 5.7588 < 7.4864] w=0.1557 to align # Constraint # added constraint: constraint((T0285)L32.CB, (T0285)V101.CB) [> 4.3414 = 7.2357 < 9.4064] w=0.1557 to align # Constraint # added constraint: constraint((T0285)A34.CB, (T0285)T102.CB) [> 4.6772 = 7.7954 < 10.1340] w=0.1557 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)T102.CB) [> 4.7874 = 7.9790 < 10.3727] w=0.1557 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)T102.CB) [> 3.5318 = 5.8863 < 7.6522] w=0.1557 to align # Constraint # added constraint: constraint((T0285)W38.CB, (T0285)I62.CB) [> 4.6127 = 7.6878 < 9.9941] w=0.1442 to align # Constraint # added constraint: constraint((T0285)M35.CB, (T0285)I62.CB) [> 2.9240 = 4.8734 < 6.3354] w=0.1442 to align # Constraint # added constraint: constraint((T0285)V98.CB, (T0285)R113.CB) [> 3.7757 = 6.2929 < 8.1807] w=0.1442 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)M63.CB) [> 2.9104 = 4.8506 < 6.3058] w=0.1415 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)I103.CB) [> 4.3715 = 7.2858 < 9.4715] w=0.1415 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)M63.CB) [> 4.3906 = 7.3176 < 9.5129] w=0.1415 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)L65.CB) [> 4.4428 = 7.4046 < 9.6260] w=0.1415 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)L65.CB) [> 4.5820 = 7.6366 < 9.9276] w=0.1415 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)S104.CB) [> 3.8504 = 6.4173 < 8.3425] w=0.1415 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)K99.CB) [> 4.7594 = 7.9323 < 10.3120] w=0.1415 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)I90.CB) [> 3.0560 = 5.0934 < 6.6214] w=0.1332 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)L92.CB) [> 4.3116 = 7.1860 < 9.3418] w=0.1332 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)R88.CB) [> 2.7617 = 4.6029 < 5.9838] w=0.1332 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)H89.CB) [> 4.7044 = 7.8407 < 10.1928] w=0.1332 to align # Constraint # added constraint: constraint((T0285)W38.CB, (T0285)L92.CB) [> 3.4148 = 5.6914 < 7.3988] w=0.1332 to align # Constraint # added constraint: constraint((T0285)P36.CB, (T0285)N93.CB) [> 4.4851 = 7.4752 < 9.7178] w=0.1332 to align # Constraint # added constraint: constraint((T0285)Y75.CB, (T0285)V101.CB) [> 4.3352 = 7.2253 < 9.3928] w=0.1332 to align # Constraint # added constraint: constraint((T0285)Y75.CB, (T0285)K99.CB) [> 1.9486 = 3.2477 < 4.2220] w=0.1332 to align # Constraint # added constraint: constraint((T0285)M63.CB, (T0285)I103.CB) [> 3.6295 = 6.0492 < 7.8640] w=0.1332 to align # Constraint # added constraint: constraint((T0285)M63.CB, (T0285)G106.CA) [> 3.6200 = 6.0334 < 7.8434] w=0.1332 to align # Constraint # added constraint: constraint((T0285)L65.CB, (T0285)Q79.CB) [> 4.5912 = 7.6520 < 9.9476] w=0.1187 to align # Constraint # added constraint: constraint((T0285)I103.CB, (T0285)M119.CB) [> 4.1170 = 6.8616 < 8.9201] w=0.1187 to align # Constraint # added constraint: constraint((T0285)I103.CB, (T0285)R113.CB) [> 3.3207 = 5.5346 < 7.1949] w=0.0960 to align # Constraint # added constraint: constraint((T0285)R107.CB, (T0285)I116.CB) [> 4.5679 = 7.6132 < 9.8971] w=0.0960 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)I90.CB) [> 4.4811 = 7.4685 < 9.7090] w=0.0792 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)H89.CB) [> 3.2972 = 5.4953 < 7.1439] w=0.0792 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)L124.CB) [> 4.1750 = 6.9583 < 9.0458] w=0.0792 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)V101.CB) [> 3.5721 = 5.9535 < 7.7395] w=0.0792 to align # Constraint # added constraint: constraint((T0285)S39.CB, (T0285)P67.CB) [> 4.7863 = 7.9771 < 10.3703] w=0.0533 to align # Constraint # added constraint: constraint((T0285)N37.CB, (T0285)P67.CB) [> 3.9042 = 6.5069 < 8.4590] w=0.0533 to align # Constraint # added constraint: constraint((T0285)L32.CB, (T0285)L65.CB) [> 4.0469 = 6.7448 < 8.7682] w=0.0533 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)G61.CA) [> 3.3777 = 5.6295 < 7.3184] w=0.0533 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0285/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0285/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Skipped atom 134, because occupancy 1 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 137, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 139, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 141, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 143, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 145, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 147, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz looking for model 1 Error: Reading chain '' from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz failed---no such chain. # naming current conformation MIG_FROST_FLEX_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 7 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 28 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0285)L3.O and (T0285)P4.N only 0.000 apart, marking (T0285)P4.N as missing # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 243 model score 2.3393 model score 1.8581 model score 1.5944 model score 1.6282 model score 2.4324 model score 1.5421 model score 1.4571 model score 1.4571 model score 1.4292 model score 1.2854 model score 1.6272 model score 1.8946 model score 1.7701 model score 1.6163 model score 1.8009 model score 1.5513 model score 2.0302 model score 1.7394 model score 1.9289 model score 2.2514 model score 1.3329 model score 1.1909 model score 1.2526 model score 1.1508 model score 1.4285 model score 1.6887 model score 1.0487 model score 1.3446 model score 1.1083 model score 1.2926 model score 1.5114 model score 1.5555 model score 1.5327 model score 1.4760 model score 1.5782 model score 1.5588 model score 2.2522 model score 2.7790 model score 1.4559 model score 2.0198 model score 1.7925 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.3434 model score 1.5591 model score 1.3730 model score 1.7313 model score 1.4413 model score 1.8146 model score 1.6748 model score 1.7834 model score 1.8770 model score 1.2651 model score 1.8531 model score 1.7795 model score 1.6647 model score 2.0944 model score 1.9129 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.2738 model score 1.2435 model score 1.2278 model score 1.7206 model score 1.5586 model score 1.4747 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.8146 model score 1.6748 model score 1.7834 model score 1.8770 model score 1.2651 model score 2.0404 model score 1.7050 model score 1.2197 model score 1.8364 model score 3.0157 model score 3.3774 model score 3.3774 model score 2.9909 model score 1.4757 model score 1.2377 model score 1.4424 model score 1.3914 model score 1.9898 model score 1.4903 model score 1.2564 model score 1.5156 model score 1.4802 model score 1.2892 model score 1.2771 model score 1.4138 model score 1.4608 model score 1.6833 model score 1.3029 model score 1.6653 model score 1.4969 model score 1.5435 model score 1.5131 model score 1.5622 model score 1.5152 model score 1.5270 model score 1.1744 model score 1.5368 model score 1.9559 model score 1.6417 model score 1.7426 model score 1.6134 model score 1.6783 model score 1.6509 model score 1.6030 model score 1.6656 model score 1.6879 model score 1.7699 model score 1.8080 model score 1.6797 model score 1.6438 model score 1.6901 model score 1.6851 model score 1.7597 model score 1.7967 model score 1.6225 model score 1.2771 model score 1.4950 model score 1.5332 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.6879 model score 1.6125 model score 1.6225 model score 1.6901 model score 1.7866 model score 1.6115 model score 1.3975 model score 1.7810 model score 1.1767 model score 1.4555 model score 0.9910 model score 1.4367 model score 1.4283 model score 1.5001 model score 1.4392 model score 1.3995 model score 0.9236 model score 1.1548 model score 1.3796 model score 1.4779 model score 1.3622 model score 1.0607 model score 1.3774 model score 1.4715 model score 1.1410 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.3693 model score 1.5121 model score 1.8858 model score 1.6967 model score 1.4450 model score 1.5270 model score 1.7810 model score 1.7560 model score 1.9563 model score 1.6115 model score 1.7773 model score 1.7107 model score 1.7189 model score 1.6145 model score 1.9270 model score 1.7446 model score 1.6714 model score 1.4944 model score 1.4810 model score 1.8201 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.4056 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.7612 model score 1.0742 model score 1.1096 model score 0.8530 model score 1.0064 model score 1.1232 model score 1.0452 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.1202 model score 1.4169 model score 1.6212 model score 1.5983 model score 2.3596 model score 1.7188 model score 1.4108 model score 1.4762 model score 1.0038 model score 1.4085 model score 1.5315 model score 1.5843 model score 1.6426 model score 1.5290 model score 1.5736 model score 1.5762 model score 1.4598 model score 1.4598 model score 1.5803 model score 1.4085 model score 1.0788 model score 1.4670 model score 1.1963 weight: 0.4571 eval: 2.3393 min: 0.7612 max: 3.3774 weight: 0.6226 eval: 1.8581 min: 0.7612 max: 3.3774 weight: 0.7134 eval: 1.5944 min: 0.7612 max: 3.3774 weight: 0.7017 eval: 1.6282 min: 0.7612 max: 3.3774 weight: 0.4251 eval: 2.4324 min: 0.7612 max: 3.3774 weight: 0.7314 eval: 1.5421 min: 0.7612 max: 3.3774 weight: 0.7606 eval: 1.4571 min: 0.7612 max: 3.3774 weight: 0.7606 eval: 1.4571 min: 0.7612 max: 3.3774 weight: 0.7702 eval: 1.4292 min: 0.7612 max: 3.3774 weight: 0.8197 eval: 1.2854 min: 0.7612 max: 3.3774 weight: 0.7021 eval: 1.6272 min: 0.7612 max: 3.3774 weight: 0.6101 eval: 1.8946 min: 0.7612 max: 3.3774 weight: 0.6529 eval: 1.7701 min: 0.7612 max: 3.3774 weight: 0.7058 eval: 1.6163 min: 0.7612 max: 3.3774 weight: 0.6423 eval: 1.8009 min: 0.7612 max: 3.3774 weight: 0.7282 eval: 1.5513 min: 0.7612 max: 3.3774 weight: 0.5635 eval: 2.0302 min: 0.7612 max: 3.3774 weight: 0.6635 eval: 1.7394 min: 0.7612 max: 3.3774 weight: 0.5983 eval: 1.9289 min: 0.7612 max: 3.3774 weight: 0.4874 eval: 2.2514 min: 0.7612 max: 3.3774 weight: 0.8033 eval: 1.3329 min: 0.7612 max: 3.3774 weight: 0.8522 eval: 1.1909 min: 0.7612 max: 3.3774 weight: 0.8310 eval: 1.2526 min: 0.7612 max: 3.3774 weight: 0.8660 eval: 1.1508 min: 0.7612 max: 3.3774 weight: 0.7705 eval: 1.4285 min: 0.7612 max: 3.3774 weight: 0.6809 eval: 1.6887 min: 0.7612 max: 3.3774 weight: 0.9011 eval: 1.0487 min: 0.7612 max: 3.3774 weight: 0.7993 eval: 1.3446 min: 0.7612 max: 3.3774 weight: 0.8806 eval: 1.1083 min: 0.7612 max: 3.3774 weight: 0.8172 eval: 1.2926 min: 0.7612 max: 3.3774 weight: 0.7419 eval: 1.5114 min: 0.7612 max: 3.3774 weight: 0.7268 eval: 1.5555 min: 0.7612 max: 3.3774 weight: 0.7346 eval: 1.5327 min: 0.7612 max: 3.3774 weight: 0.7541 eval: 1.4760 min: 0.7612 max: 3.3774 weight: 0.7189 eval: 1.5782 min: 0.7612 max: 3.3774 weight: 0.7256 eval: 1.5588 min: 0.7612 max: 3.3774 weight: 0.4871 eval: 2.2522 min: 0.7612 max: 3.3774 weight: 0.3058 eval: 2.7790 min: 0.7612 max: 3.3774 weight: 0.7610 eval: 1.4559 min: 0.7612 max: 3.3774 weight: 0.5670 eval: 2.0198 min: 0.7612 max: 3.3774 weight: 0.6452 eval: 1.7925 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.7997 eval: 1.3434 min: 0.7612 max: 3.3774 weight: 0.7255 eval: 1.5591 min: 0.7612 max: 3.3774 weight: 0.7895 eval: 1.3730 min: 0.7612 max: 3.3774 weight: 0.6663 eval: 1.7313 min: 0.7612 max: 3.3774 weight: 0.7660 eval: 1.4413 min: 0.7612 max: 3.3774 weight: 0.6376 eval: 1.8146 min: 0.7612 max: 3.3774 weight: 0.6857 eval: 1.6748 min: 0.7612 max: 3.3774 weight: 0.6483 eval: 1.7834 min: 0.7612 max: 3.3774 weight: 0.6161 eval: 1.8770 min: 0.7612 max: 3.3774 weight: 0.8267 eval: 1.2651 min: 0.7612 max: 3.3774 weight: 0.6244 eval: 1.8531 min: 0.7612 max: 3.3774 weight: 0.6497 eval: 1.7795 min: 0.7612 max: 3.3774 weight: 0.6892 eval: 1.6647 min: 0.7612 max: 3.3774 weight: 0.5414 eval: 2.0944 min: 0.7612 max: 3.3774 weight: 0.6038 eval: 1.9129 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.4797 eval: 2.2738 min: 0.7612 max: 3.3774 weight: 0.8341 eval: 1.2435 min: 0.7612 max: 3.3774 weight: 0.8395 eval: 1.2278 min: 0.7612 max: 3.3774 weight: 0.6700 eval: 1.7206 min: 0.7612 max: 3.3774 weight: 0.7257 eval: 1.5586 min: 0.7612 max: 3.3774 weight: 0.7546 eval: 1.4747 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.6376 eval: 1.8146 min: 0.7612 max: 3.3774 weight: 0.6857 eval: 1.6748 min: 0.7612 max: 3.3774 weight: 0.6483 eval: 1.7834 min: 0.7612 max: 3.3774 weight: 0.6161 eval: 1.8770 min: 0.7612 max: 3.3774 weight: 0.8267 eval: 1.2651 min: 0.7612 max: 3.3774 weight: 0.5599 eval: 2.0404 min: 0.7612 max: 3.3774 weight: 0.6753 eval: 1.7050 min: 0.7612 max: 3.3774 weight: 0.8423 eval: 1.2197 min: 0.7612 max: 3.3774 weight: 0.6301 eval: 1.8364 min: 0.7612 max: 3.3774 weight: 0.2244 eval: 3.0157 min: 0.7612 max: 3.3774 weight: 0.1000 eval: 3.3774 min: 0.7612 max: 3.3774 weight: 0.1000 eval: 3.3774 min: 0.7612 max: 3.3774 weight: 0.2330 eval: 2.9909 min: 0.7612 max: 3.3774 weight: 0.7542 eval: 1.4757 min: 0.7612 max: 3.3774 weight: 0.8361 eval: 1.2377 min: 0.7612 max: 3.3774 weight: 0.7657 eval: 1.4424 min: 0.7612 max: 3.3774 weight: 0.7832 eval: 1.3914 min: 0.7612 max: 3.3774 weight: 0.5773 eval: 1.9898 min: 0.7612 max: 3.3774 weight: 0.7492 eval: 1.4903 min: 0.7612 max: 3.3774 weight: 0.8296 eval: 1.2564 min: 0.7612 max: 3.3774 weight: 0.7405 eval: 1.5156 min: 0.7612 max: 3.3774 weight: 0.7527 eval: 1.4802 min: 0.7612 max: 3.3774 weight: 0.8184 eval: 1.2892 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.7755 eval: 1.4138 min: 0.7612 max: 3.3774 weight: 0.7593 eval: 1.4608 min: 0.7612 max: 3.3774 weight: 0.6828 eval: 1.6833 min: 0.7612 max: 3.3774 weight: 0.8136 eval: 1.3029 min: 0.7612 max: 3.3774 weight: 0.6890 eval: 1.6653 min: 0.7612 max: 3.3774 weight: 0.7469 eval: 1.4969 min: 0.7612 max: 3.3774 weight: 0.7309 eval: 1.5435 min: 0.7612 max: 3.3774 weight: 0.7413 eval: 1.5131 min: 0.7612 max: 3.3774 weight: 0.7245 eval: 1.5622 min: 0.7612 max: 3.3774 weight: 0.7406 eval: 1.5152 min: 0.7612 max: 3.3774 weight: 0.7366 eval: 1.5270 min: 0.7612 max: 3.3774 weight: 0.8579 eval: 1.1744 min: 0.7612 max: 3.3774 weight: 0.7332 eval: 1.5368 min: 0.7612 max: 3.3774 weight: 0.5890 eval: 1.9559 min: 0.7612 max: 3.3774 weight: 0.6971 eval: 1.6417 min: 0.7612 max: 3.3774 weight: 0.6624 eval: 1.7426 min: 0.7612 max: 3.3774 weight: 0.7068 eval: 1.6134 min: 0.7612 max: 3.3774 weight: 0.6845 eval: 1.6783 min: 0.7612 max: 3.3774 weight: 0.6939 eval: 1.6509 min: 0.7612 max: 3.3774 weight: 0.7104 eval: 1.6030 min: 0.7612 max: 3.3774 weight: 0.6889 eval: 1.6656 min: 0.7612 max: 3.3774 weight: 0.6812 eval: 1.6879 min: 0.7612 max: 3.3774 weight: 0.6530 eval: 1.7699 min: 0.7612 max: 3.3774 weight: 0.6399 eval: 1.8080 min: 0.7612 max: 3.3774 weight: 0.6840 eval: 1.6797 min: 0.7612 max: 3.3774 weight: 0.6964 eval: 1.6438 min: 0.7612 max: 3.3774 weight: 0.6805 eval: 1.6901 min: 0.7612 max: 3.3774 weight: 0.6822 eval: 1.6851 min: 0.7612 max: 3.3774 weight: 0.6565 eval: 1.7597 min: 0.7612 max: 3.3774 weight: 0.6438 eval: 1.7967 min: 0.7612 max: 3.3774 weight: 0.7037 eval: 1.6225 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.7476 eval: 1.4950 min: 0.7612 max: 3.3774 weight: 0.7344 eval: 1.5332 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.6812 eval: 1.6879 min: 0.7612 max: 3.3774 weight: 0.7071 eval: 1.6125 min: 0.7612 max: 3.3774 weight: 0.7037 eval: 1.6225 min: 0.7612 max: 3.3774 weight: 0.6805 eval: 1.6901 min: 0.7612 max: 3.3774 weight: 0.6473 eval: 1.7866 min: 0.7612 max: 3.3774 weight: 0.7075 eval: 1.6115 min: 0.7612 max: 3.3774 weight: 0.7811 eval: 1.3975 min: 0.7612 max: 3.3774 weight: 0.6492 eval: 1.7810 min: 0.7612 max: 3.3774 weight: 0.8571 eval: 1.1767 min: 0.7612 max: 3.3774 weight: 0.7612 eval: 1.4555 min: 0.7612 max: 3.3774 weight: 0.9209 eval: 0.9910 min: 0.7612 max: 3.3774 weight: 0.7676 eval: 1.4367 min: 0.7612 max: 3.3774 weight: 0.7705 eval: 1.4283 min: 0.7612 max: 3.3774 weight: 0.7458 eval: 1.5001 min: 0.7612 max: 3.3774 weight: 0.7668 eval: 1.4392 min: 0.7612 max: 3.3774 weight: 0.7804 eval: 1.3995 min: 0.7612 max: 3.3774 weight: 0.9441 eval: 0.9236 min: 0.7612 max: 3.3774 weight: 0.8646 eval: 1.1548 min: 0.7612 max: 3.3774 weight: 0.7873 eval: 1.3796 min: 0.7612 max: 3.3774 weight: 0.7534 eval: 1.4779 min: 0.7612 max: 3.3774 weight: 0.7933 eval: 1.3622 min: 0.7612 max: 3.3774 weight: 0.8970 eval: 1.0607 min: 0.7612 max: 3.3774 weight: 0.7880 eval: 1.3774 min: 0.7612 max: 3.3774 weight: 0.7556 eval: 1.4715 min: 0.7612 max: 3.3774 weight: 0.8694 eval: 1.1410 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.7908 eval: 1.3693 min: 0.7612 max: 3.3774 weight: 0.7417 eval: 1.5121 min: 0.7612 max: 3.3774 weight: 0.6131 eval: 1.8858 min: 0.7612 max: 3.3774 weight: 0.6782 eval: 1.6967 min: 0.7612 max: 3.3774 weight: 0.7648 eval: 1.4450 min: 0.7612 max: 3.3774 weight: 0.7366 eval: 1.5270 min: 0.7612 max: 3.3774 weight: 0.6492 eval: 1.7810 min: 0.7612 max: 3.3774 weight: 0.6578 eval: 1.7560 min: 0.7612 max: 3.3774 weight: 0.5889 eval: 1.9563 min: 0.7612 max: 3.3774 weight: 0.7075 eval: 1.6115 min: 0.7612 max: 3.3774 weight: 0.6504 eval: 1.7773 min: 0.7612 max: 3.3774 weight: 0.6734 eval: 1.7107 min: 0.7612 max: 3.3774 weight: 0.6705 eval: 1.7189 min: 0.7612 max: 3.3774 weight: 0.7065 eval: 1.6145 min: 0.7612 max: 3.3774 weight: 0.5989 eval: 1.9270 min: 0.7612 max: 3.3774 weight: 0.6617 eval: 1.7446 min: 0.7612 max: 3.3774 weight: 0.6869 eval: 1.6714 min: 0.7612 max: 3.3774 weight: 0.7478 eval: 1.4944 min: 0.7612 max: 3.3774 weight: 0.7524 eval: 1.4810 min: 0.7612 max: 3.3774 weight: 0.6357 eval: 1.8201 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.7783 eval: 1.4056 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 1.0000 eval: 0.7612 min: 0.7612 max: 3.3774 weight: 0.8923 eval: 1.0742 min: 0.7612 max: 3.3774 weight: 0.8801 eval: 1.1096 min: 0.7612 max: 3.3774 weight: 0.9684 eval: 0.8530 min: 0.7612 max: 3.3774 weight: 0.9157 eval: 1.0064 min: 0.7612 max: 3.3774 weight: 0.8755 eval: 1.1232 min: 0.7612 max: 3.3774 weight: 0.9023 eval: 1.0452 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8225 eval: 1.2771 min: 0.7612 max: 3.3774 weight: 0.8765 eval: 1.1202 min: 0.7612 max: 3.3774 weight: 0.7744 eval: 1.4169 min: 0.7612 max: 3.3774 weight: 0.7041 eval: 1.6212 min: 0.7612 max: 3.3774 weight: 0.7120 eval: 1.5983 min: 0.7612 max: 3.3774 weight: 0.4501 eval: 2.3596 min: 0.7612 max: 3.3774 weight: 0.6706 eval: 1.7188 min: 0.7612 max: 3.3774 weight: 0.7765 eval: 1.4108 min: 0.7612 max: 3.3774 weight: 0.7540 eval: 1.4762 min: 0.7612 max: 3.3774 weight: 0.9165 eval: 1.0038 min: 0.7612 max: 3.3774 weight: 0.7773 eval: 1.4085 min: 0.7612 max: 3.3774 weight: 0.7350 eval: 1.5315 min: 0.7612 max: 3.3774 weight: 0.7169 eval: 1.5843 min: 0.7612 max: 3.3774 weight: 0.6968 eval: 1.6426 min: 0.7612 max: 3.3774 weight: 0.7359 eval: 1.5290 min: 0.7612 max: 3.3774 weight: 0.7205 eval: 1.5736 min: 0.7612 max: 3.3774 weight: 0.7196 eval: 1.5762 min: 0.7612 max: 3.3774 weight: 0.7597 eval: 1.4598 min: 0.7612 max: 3.3774 weight: 0.7597 eval: 1.4598 min: 0.7612 max: 3.3774 weight: 0.7182 eval: 1.5803 min: 0.7612 max: 3.3774 weight: 0.7773 eval: 1.4085 min: 0.7612 max: 3.3774 weight: 0.8908 eval: 1.0788 min: 0.7612 max: 3.3774 weight: 0.7572 eval: 1.4670 min: 0.7612 max: 3.3774 weight: 0.8503 eval: 1.1963 min: 0.7612 max: 3.3774 Adding 5978 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -221.8146, CN propb: -221.8146 weights: 0.3417 constraints: 227 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 227 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 227 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 5751 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 5751 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 5978 # command: