CostFcnEval/runs0.6-1.3-0.05 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-12769-42597861/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.6-1.3-0.1 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-15836-78065768/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.6-1.3-0.15 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-19208-59622152/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.6-1.4-0.05 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-25992-19798972/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.6-1.4-0.1 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-31280-68680842/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.6-1.4-0.15 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-2699-24642241/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.6-1.5-0.05 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-5601-40915830/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.6-1.5-0.1 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-8687-49949451/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.6-1.5-0.15 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-12362-63426194/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.7-1.3-0.05 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-15956-4843212/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.7-1.3-0.1 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-18990-72579096/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.7-1.3-0.15 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-22270-42311343/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.8-1.3-0.05 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-24908-93700340/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.8-1.3-0.1 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-27446-43391053/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.8-1.3-0.15 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-29987-54826093/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.8-1.4-0.1 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-32652-94435668/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.8-1.4-0.15 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-2737-31598473/README for more info. ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8-1.rdb -f0 > runs/constraint-optimized8-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus-1.rdb -f0 > runs/constraint-optimized8_bonus-1-real_cost-tau.rdb ./cfneval.pl -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-gdt-tau.rdb ./cfneval.pl -q real_cost -s decoys/predictions.evaluate.constraint-optimized8_bonus_nonc-1.rdb -f0 > runs/constraint-optimized8_bonus_nonc-1-real_cost-tau.rdb CostFcnEval/runs0.8-1.5-0.05 cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0283; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0288; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0289; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0290; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0291; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0292; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0293; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0295; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0296; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0297; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0298; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0299; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0300; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0301; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0302; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0303; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0304; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0305; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0306; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0307; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0308; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0309; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0311; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0312; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0313; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0314; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0315; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0316; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0317; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0318; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0319; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0321; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0322; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0323; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0324; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0325; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0326; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0327; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0328; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0329; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0330; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0331; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0332; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0335; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0338; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0339; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0340; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0341; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0342; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0345; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0346; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0347; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0348; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0349; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0350; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0351; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0353; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0354; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0356; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0357; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0358; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0359; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0360; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0361; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0362; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0363; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0364; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0365; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0367; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0368; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0369; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0370; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0371; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0372; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0373; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0374; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0375; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0376; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0378; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0379; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0380; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0381; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0382; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0383; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0384; rm alignment_constraints-good-all-*.under; cd /projects/compbio/experiments/protein-predict/casp7/constraints_v2/T0385; rm alignment_constraints-good-all-*.under; para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-palu-5330-24849449/README for more info.