# List of top-scoring protein chains for T0369.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f22A 144 4.94e-13 1rxqA 178 9.96e-05 a.213.1.1 105118 1mc8A 343 2.77e+00 a.60.7.1,c.120.1.2 78945,78946 1b43A 340 3.14e+00 1a76 a.60.7.1,c.120.1.2 18092,33362 2d8aA 348 3.45e+00 1opkA 495 3.97e+00 b.34.2.1,d.93.1.1,d.144.1.7 87232,87233,87234 1xp3A 307 4.97e+00 2fo0A 495 4.97e+00 1oplA 537 5.18e+00 b.34.2.1,d.93.1.1,d.144.1.7 87235,87236,87237 1zghA 260 5.31e+00 1u3eM 174 7.42e+00 d.4.1.3,d.285.1.1 107640,107641 1k9vF 201 7.47e+00 c.23.16.1 68365 2gswA 182 8.52e+00 1z45A 699 1.01e+01 1kxjA 205 1.12e+01 c.23.16.1 73153 1szpA 321 1.20e+01 a.60.4.1,c.37.1.11 106176,106177 2sas 185 1.25e+01 2sas a.39.1.5 17258 1wkbA 810 1.39e+01 1btc 491 1.41e+01 1byb c.1.8.1 28791 1byb 495 1.43e+01 1byb c.1.8.1 28790 1yv0I 137 1.56e+01 1nni1 174 1.66e+01 2d2zA 261 1.80e+01 2aheA 267 1.82e+01 1q6eA 495 1.84e+01 c.1.8.1 95972 1q6gA 495 2.00e+01 c.1.8.1 95974 1v3hA 495 2.01e+01 c.1.8.1 108303 1wdrA 495 2.02e+01 1v3iA 495 2.02e+01 c.1.8.1 108304 1poiB 260 2.03e+01 1poiB c.124.1.3 34155 1wdpA 495 2.04e+01 1ukpA 495 2.05e+01 c.1.8.1 99505 1ukoA 495 2.05e+01 c.1.8.1 99501 1wdsA 495 2.05e+01 1jsxA 207 2.06e+01 c.66.1.20 71846 1b06A 210 2.06e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1wdqA 495 2.23e+01 1lm6A 215 2.23e+01 d.167.1.1 84628 1ytzI 182 2.28e+01 1cjxA 357 2.47e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1jssA 224 2.54e+01 d.129.3.2 71844 2gz4A 207 2.59e+01 2aieP 203 2.59e+01 1i0eA 381 2.61e+01 a.83.1.1,d.128.1.2 83655,83656 1uirA 314 2.69e+01 c.66.1.17 99429 2ew0A 192 2.71e+01 1sngA 370 2.76e+01 1q6dA 495 2.77e+01 c.1.8.1 95971 1ass 159 2.80e+01 1a6dA c.8.5.2 30818 2aiaA 203 2.85e+01 1ceuA 51 3.03e+01 1ceuA j.11.1.1 46137 1pq3A 306 3.50e+01 c.42.1.1 94989 1mtpA 323 3.51e+01 e.1.1.1 85107 1v6bA 118 3.71e+01 b.36.1.1 108394 1mn1 357 3.78e+01 1arv a.93.1.1 18667 1yq9H 536 3.95e+01 1z5zA 271 4.23e+01 1bouB 302 4.41e+01 1bouB c.56.6.1 33859 1frvB 536 4.44e+01 1h2rL e.18.1.1 43296 1yydA 357 4.50e+01 1esxA 96 5.09e+01 1esxA j.11.1.1 59501 1qgrA 876 5.09e+01 1qgrA a.118.1.1 19119 1z63A 500 5.36e+01 1vqoW 154 5.37e+01 1su1A 208 5.44e+01 d.159.1.7 106016 1ug6A 431 5.71e+01 c.1.8.4 88490 1fotA 318 5.82e+01 1cdkA d.144.1.7 59938 2acxA 576 5.90e+01 1qs0B 338 5.97e+01 1qs0B c.36.1.7,c.48.1.2 31830,33103 2bp7B 339 5.98e+01 2frvB 536 5.98e+01 1h2rL e.18.1.1 43291 1mn2 357 6.03e+01 1arv a.93.1.1 18666 1ab2 109 6.05e+01 1lckA d.93.1.1 40506 2ap6A 112 6.14e+01 2nacA 393 6.27e+01 2nadA c.2.1.4,c.23.12.1 30088,31348 2ga1A 106 6.29e+01 2go1A 401 6.40e+01 2bgiA 272 6.40e+01 1zq1C 633 6.58e+01 1uoyA 64 6.71e+01 g.3.19.1 99709 1qo2A 241 7.11e+01 1qo2A c.1.2.1 28533 1o5hA 214 7.35e+01 a.191.1.1 92497 1bak 119 7.41e+01 1bak b.55.1.1 26973 1prxA 224 7.50e+01 1prxA c.47.1.10 33076 1ykfA 352 7.53e+01 1pedA b.35.1.2,c.2.1.1 24757,29773 1i5sA 367 7.67e+01 1bg2 c.37.1.9 61822 1i6iA 366 7.67e+01 1bg2 c.37.1.9 61844 2d2sA 235 7.79e+01 1ia0K 394 7.88e+01 i.10.1.1 71167 1vfvA 366 8.01e+01 c.37.1.9 108592 1s4dA 280 8.12e+01 1n1cA 217 8.20e+01 a.184.1.1 85254 2bw2A 140 8.24e+01 1gy8A 397 8.37e+01 c.2.1.2 83376 1yf2A 425 8.69e+01 1bdg 451 8.94e+01 1qhaA c.55.1.3,c.55.1.3 33461,33462