# List of top-scoring protein chains for T0346.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1awqA 164 4.27e-43 2cpl b.62.1.1 27461 1yndA 165 4.27e-43 1m9eA 164 5.08e-43 b.62.1.1 84894 2alfA 164 8.31e-43 2bitX 165 1.24e-42 1cynA 178 1.39e-42 2cpl b.62.1.1 27489 2gw2A 198 1.58e-42 1ihgA 370 4.27e-42 2cpl a.118.8.1,b.62.1.1 62380,62381 1dywA 173 4.37e-42 2cpl b.62.1.1 27505 1qngA 170 7.50e-42 2cpl b.62.1.1 27507 1a58 177 9.58e-42 2cpl b.62.1.1 27495 1zmfA 165 1.45e-41 1zcxA 178 1.48e-41 1xo7A 166 1.90e-41 1qnhA 170 2.48e-41 2cpl b.62.1.1 27508 2rmcA 182 5.58e-41 2cpl b.62.1.1 27491 2cfeA 162 5.70e-41 2eslA 190 8.78e-41 1vdnA 162 1.39e-40 1qoiA 177 1.40e-40 2cpl b.62.1.1 27490 1h0pA 182 2.14e-40 b.62.1.1 76450 2a2nA 176 2.70e-38 1xyhA 161 3.53e-38 1xwnA 174 5.05e-38 1zkcA 197 1.38e-37 1z81A 229 7.83e-36 2fu0A 160 1.52e-35 2c3bA 172 3.45e-35 2b71A 196 5.29e-35 1w74A 191 4.68e-34 1v9tA 166 6.77e-32 b.62.1.1 108451 1clh 166 7.84e-32 2cpl b.62.1.1 27512 2nul 164 1.96e-31 2cpl b.62.1.1 27511 1lopA 164 6.43e-31 2cpl b.62.1.1 27510 2fug5 207 1.22e+00 1wq5A 268 1.83e+00 2as9A 210 2.68e+00 2a9vA 212 4.02e+00 1ufbA 127 4.11e+00 a.24.16.3 99331 1q45A 391 1.01e+01 c.1.4.1 95780 1xc4A 268 1.03e+01 1vblA 416 1.23e+01 1p6qA 129 1.28e+01 c.23.1.1 104074 1icpA 376 1.33e+01 1oyc c.1.4.1 62270 2sil 381 1.89e+01 3sil b.68.1.1 27543 1df9A 191 1.96e+01 1befA b.47.1.3 26420 3sil 379 2.10e+01 3sil b.68.1.1 27542 1wi1A 126 2.15e+01 1zumA 500 2.22e+01 1cw3A 494 2.22e+01 1bpwA c.82.1.1 35349 1o02A 500 2.22e+01 c.82.1.1 86499 1zx8A 136 2.22e+01 2bdrA 175 2.68e+01 2fomB 185 2.69e+01 1xcfA 268 2.99e+01 2masA 314 3.00e+01 2masA c.70.1.1 34810 1dgnA 89 3.04e+01 1dgnA a.77.1.3 18436 1mxiA 160 3.10e+01 c.116.1.1 79646 2f9fA 177 3.16e+01 1a2n 419 3.24e+01 1uae d.68.2.2 39575 1zroA 602 3.36e+01 1n7dA 699 3.50e+01 b.68.5.1,g.3.11.1,g.3.11.1,g.3.11.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1 80236,80237,80238,80239,80240,80241,80242,80243,80244,80245 1kfbA 268 3.63e+01 c.1.2.4 77369 1wdnA 226 3.71e+01 1lst c.94.1.1 35816 1uae 419 3.74e+01 1uae d.68.2.2 39574 1beuA 268 3.74e+01 2tysA c.1.2.4 28574 1wisA 124 3.82e+01 2fz5A 137 3.86e+01 1o04A 500 3.99e+01 c.82.1.1 86508 1xocA 520 4.00e+01 1tjpA 268 4.01e+01 1ichA 112 4.24e+01 a.77.1.2 71182 1tv5A 443 4.26e+01 2b61A 377 4.30e+01 1befA 181 4.84e+01 1befA b.47.1.3 26419 1zlgA 680 5.04e+01 2gfhA 260 5.20e+01 2axtB 510 5.25e+01 1va8A 113 5.30e+01 1ag8A 499 5.51e+01 1bpwA c.82.1.1 35341 2abbA 364 5.57e+01 1y42X 392 5.61e+01 1whrA 124 5.69e+01 1lluA 342 5.75e+01 b.35.1.2,c.2.1.1 91064,91065 1vysX 364 6.00e+01 c.1.4.1 108907 1up8A 598 6.02e+01 a.111.1.2 99710 1vypX 364 6.11e+01 c.1.4.1 108905 1vyrA 364 6.14e+01 c.1.4.1 108906 1qe0A 420 6.24e+01 1adjA c.51.1.1,d.104.1.1 33186,40735 1ky9A 448 6.38e+01 b.36.1.4,b.47.1.1 73198,73199 1ea6A 364 6.40e+01 d.14.1.3,d.122.1.2 64871,64872 1h7sA 365 6.50e+01 d.14.1.3,d.122.1.2 65705,65706 1zysA 273 6.94e+01 1f6wA 533 7.01e+01 2bce c.69.1.1 34629 1d5wA 126 7.12e+01 1dbwA c.23.1.1 31099 1dqiA 124 7.22e+01 1do6A b.1.13.1 22357 2g3aA 152 7.36e+01 2gm6A 208 7.53e+01 1reoA 486 7.57e+01 c.3.1.2,d.16.1.5 97325,97326 2bmbA 545 7.59e+01 1b35D 57 7.66e+01 1b35D b.121.4.1 83038 1ujlA 42 7.94e+01 j.12.1.1 99459 1czdA 228 8.47e+01 1b77A d.131.1.2,d.131.1.2 41374,41375 2d2mB 142 8.53e+01 1cs0B 382 8.58e+01 1c3oB c.8.3.1,c.23.16.1 30740,31417 1z3uA 217 8.60e+01 1ia8A 289 8.68e+01 1ia8A d.144.1.7 62112 1dz3A 130 8.89e+01 1dz3A c.23.1.1 31105 1vjvA 415 8.95e+01 d.3.1.9 108632