# List of top-scoring protein chains for T0313.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mkjA 349 8.26e-50 c.37.1.9 79239 1bg2 325 8.68e-50 1bg2 c.37.1.9 32189 1gojA 355 1.46e-48 c.37.1.9 65419 1i6iA 366 2.97e-48 1bg2 c.37.1.9 61844 1i5sA 367 2.98e-48 1bg2 c.37.1.9 61822 1ia0K 394 3.01e-48 i.10.1.1 71167 1vfvA 366 3.42e-48 c.37.1.9 108592 1sdmA 369 8.79e-47 c.37.1.9 105438 1t5cA 349 3.00e-46 1x88A 359 3.12e-46 1q0bA 367 3.12e-46 c.37.1.9 95502 1ii6A 368 3.13e-46 1bg2 c.37.1.9 62413 1cz7A 406 9.45e-44 1bg2 c.37.1.9 32194 2ncdA 420 9.55e-44 1bg2 c.37.1.9 32193 3kar 346 1.45e-43 1bg2 c.37.1.9 32198 1f9tA 358 1.78e-43 1bg2 c.37.1.9 59743 1n6mA 409 2.10e-43 c.37.1.9 91688 1f9uA 347 3.16e-43 1bg2 c.37.1.9 59744 1f9wA 347 4.17e-43 1bg2 c.37.1.9 59746 1f9vA 347 4.98e-43 1bg2 c.37.1.9 59745 2gryA 420 3.93e-42 1v8kA 410 6.09e-42 c.37.1.9 100510 1ry6A 360 1.03e-38 c.37.1.9 98090 2kinA 238 4.41e-35 1bg2 c.37.1.9 32190 2kinB 100 7.05e-14 3kinB 3kinB 117 3.11e-13 3kinB 1l8qA 324 6.22e-02 a.4.12.2,c.37.1.20 77809,77810 1d2mA 665 4.42e-01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1c4oA 664 4.56e-01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1d9xA 658 6.31e-01 1d2mA c.37.1.19,c.37.1.19 32419,32420 1d9zA 657 6.49e-01 1d2mA c.37.1.19,c.37.1.19 32421,32422 2fdcA 658 6.69e-01 1t5lA 658 6.90e-01 c.37.1.19,c.37.1.19 106455,106456 1p9rA 418 9.03e-01 c.37.1.11 94399 1sxjC 340 1.10e+00 a.80.1.1,c.37.1.20 106085,106086 2d7dA 661 1.52e+00 2bhuA 602 2.17e+00 1htjF 210 2.66e+00 1htjF a.91.1.1 61254 1ji0A 240 2.70e+00 c.37.1.12 71665 1odfA 290 3.68e+00 c.37.1.6 92782 2cdnA 201 3.86e+00 1f60A 458 4.78e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1xw8A 252 5.09e+00 1yrbA 262 5.72e+00 1qf9A 194 5.77e+00 1zin c.37.1.1 31848 1eu1A 780 6.80e+00 1dmr b.52.2.2,c.81.1.1 26903,35311 2b34A 199 7.04e+00 1g6oA 330 8.51e+00 1g6oA c.37.1.11 32430 2fji1 399 1.11e+01 1e69A 322 1.23e+01 1e69B c.37.1.12 32376 1um8A 376 1.34e+01 c.37.1.20 99580 1k5cA 335 1.50e+01 b.80.1.3 72076 2chlA 351 1.55e+01 1qzxA 440 1.64e+01 a.24.13.1,a.36.1.1,c.37.1.10 96711,96712,96713 1h65A 270 1.69e+01 c.37.1.8 65640 1lv7A 257 1.73e+01 c.37.1.20 78232 1sxjD 353 1.75e+01 a.80.1.1,c.37.1.20 106087,106088 1v3eA 431 1.87e+01 b.68.1.1 100287 1vnh 609 1.94e+01 1vns a.111.1.3 19062 1iduA 609 1.95e+01 1vns a.111.1.3 62303 1vnf 609 2.01e+01 1vns a.111.1.3 19067 1vng 609 2.01e+01 1vns a.111.1.3 19066 1vns 609 2.01e+01 1vns a.111.1.3 19061 1vne 609 2.03e+01 1vns a.111.1.3 19063 1jx2B 315 2.11e+01 c.37.1.8 67404 1xwiA 322 2.19e+01 1bouB 302 2.26e+01 1bouB c.56.6.1 33859 1mr3F 181 2.36e+01 c.37.1.8 79422 1p4sA 181 2.40e+01 c.37.1.1 94117 2dfsA 1080 2.40e+01 1s16A 390 2.40e+01 d.14.1.3,d.122.1.2 98331,98332 1svcP 365 2.67e+01 1a3qA b.1.18.1,b.2.5.3 21924,22443 2a5yB 549 2.68e+01 1iy2A 278 2.75e+01 c.37.1.20 76941 1do0A 442 2.77e+01 1do0A c.37.1.20 32432 1g4aE 443 2.79e+01 1do0A c.37.1.20 32444 1e94E 449 2.86e+01 1do0A c.37.1.20 32442 1ixzA 254 2.87e+01 c.37.1.20 76938 1w7jA 795 2.91e+01 1cjl 312 3.02e+01 1cs8A d.3.1.1 37066 1w8jA 766 3.33e+01 1fuuA 394 3.40e+01 1qvaA c.37.1.19 32412 1r5bA 467 3.45e+01 b.43.3.1,b.44.1.1,c.37.1.8 104803,104804,104805 1g291 372 3.51e+01 1g291 2d62A 375 3.64e+01 1np3A 338 3.66e+01 a.100.1.2,c.2.1.6 85946,85947 2bkhA 814 3.86e+01 1yo5C 97 3.88e+01 2ng1 293 3.92e+01 1ng1 a.24.13.1,c.37.1.10 16962,32273 1qhlA 227 4.03e+01 1qhlA c.37.1.12 32382 1ffh 294 4.08e+01 1ng1 a.24.13.1,c.37.1.10 16960,32271 1ixrC 312 4.08e+01 a.4.5.11,c.37.1.20 76930,76931 1ng1 294 4.13e+01 1ng1 a.24.13.1,c.37.1.10 16961,32272 1rj9A 304 4.14e+01 a.24.13.1,c.37.1.10 97553,97554 1ixsB 318 4.22e+01 a.4.5.11,c.37.1.20 76933,76934 2bkiA 858 4.24e+01 1powA 585 4.25e+01 1poxA c.31.1.3,c.36.1.5,c.36.1.9 31733,31797,31798 1ls1A 295 4.27e+01 a.24.13.1,c.37.1.10 78170,78171 2bbjA 354 4.29e+01 2bwjA 199 4.35e+01 1ooaA 326 4.35e+01 b.1.18.1,b.2.5.3 87192,87193 1nfkA 325 4.38e+01 1a3qA b.1.18.1,b.2.5.3 21929,22444 1poxA 585 4.52e+01 1poxA c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2g9nA 221 4.52e+01 1wf3A 301 4.53e+01 1hqcA 324 4.58e+01 1hqcA a.4.5.11,c.37.1.20 16127,32424 1jpnA 296 4.62e+01 a.24.13.1,c.37.1.10 67039,67040 1dmhA 311 4.62e+01 1dmhA b.3.6.1 22633 1g8pA 350 4.63e+01 1g8pA c.37.1.20 60376 1leiB 313 4.65e+01 b.1.18.1,b.2.5.3 84601,84602 1vkxB 312 4.71e+01 1a3qA b.1.18.1,b.2.5.3 21931,22446 1vciA 373 4.74e+01 1v43A 372 4.76e+01 1nal1 297 4.81e+01 1nal3 1kit 757 4.84e+01 1kit b.29.1.8,b.29.1.8,b.68.1.1 24272,24273,27616 1mabG 270 4.95e+01 1e1qG c.49.2.1 33165 2dh4A 340 4.98e+01 1o87A 297 5.00e+01 a.24.13.1,c.37.1.10 92640,92641 2ax4A 198 5.02e+01 1okkD 303 5.05e+01 a.24.13.1,c.37.1.10 93261,93262 1rj9B 300 5.10e+01 a.24.13.1,c.37.1.10 97555,97556 2f43G 273 5.13e+01 1z6tA 591 5.17e+01 1hl2A 297 5.17e+01 c.1.10.1 83581 2gdjA 264 5.21e+01 1p3jA 217 5.27e+01 c.37.1.1,g.41.2.1 94022,94023 1gawA 314 5.39e+01 1fnc b.43.4.2,c.25.1.1 25643,31533 1c4zA 358 5.40e+01 1c4zA d.148.1.1 41766 1ii8A 195 5.43e+01 1f2tA c.37.1.12 62417 2c47A 313 5.48e+01 2ez9A 603 5.49e+01 1sr4C 166 5.59e+01 b.42.2.1 105950 1knxA 312 5.64e+01 c.98.2.1,c.91.1.2 77459,77460 1y9dA 603 5.66e+01 1f5nA 592 5.68e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1w0pA 781 5.69e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2bboA 291 5.79e+01 1if1A 113 5.91e+01 2irfG a.4.5.23 16183 1xmjA 290 5.97e+01 1z83A 196 5.99e+01 3adk 195 6.08e+01 1zin c.37.1.1 31885 1fdyA 297 6.11e+01 1nal3 c.1.10.1 29071 2a1rA 430 6.13e+01 1zo1I 501 6.28e+01 1im4A 221 6.30e+01 e.8.1.7 62581 1thtA 305 6.44e+01 1thtA c.69.1.13 34711 1sm4A 296 6.66e+01 b.43.4.2,c.25.1.1 98913,98914 1f42A 306 6.76e+01 1f42A b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1vqoD 177 6.79e+01 2g0tA 350 6.89e+01 1jj2D 176 6.94e+01 1ffkD d.77.1.1 63088 1vdc 333 7.04e+01 1trb c.3.1.5,c.3.1.5 30545,30546 1nsj 205 7.12e+01 1nsj c.1.2.4 28560 1mn4A 282 7.19e+01 b.2.5.7 79313 1lm7A 248 7.24e+01 d.211.2.1 74031 1us8A 147 7.32e+01 c.37.1.12 99859 2bbtA 290 7.34e+01 1cs8A 316 7.35e+01 1cs8A d.3.1.1 37065 1f2tA 149 7.36e+01 1f2tA c.37.1.12 32373 1sv8A 361 7.51e+01 c.1.8.5,d.26.3.1 99019,99020 1yobA 179 7.52e+01 1xmiA 291 7.59e+01 2dg5B 190 7.72e+01 1dxy 333 7.77e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1qvbA 481 7.83e+01 1qvbA c.1.8.4 28983 1sddB 647 7.86e+01 b.6.1.3,b.6.1.3,b.18.1.2,b.18.1.2 105433,105434,105435,105436 1s1hD 179 8.03e+01 i.1.1.1 105157 1pdz 434 8.10e+01 4enl c.1.11.1,d.54.1.1 29215,38859 2ghpA 292 8.33e+01 2bbsA 290 8.37e+01 2bkaA 242 8.37e+01 1br9 194 8.50e+01 1br9 b.40.3.1 25235 2bt2A 161 8.70e+01 2gbjA 84 8.77e+01 2akzA 439 8.90e+01 1mnnA 340 8.99e+01 b.2.5.7 79324 1ei1A 391 9.00e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104